Citrus Sinensis ID: 039790
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1395 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LTT8 | 1344 | Enhancer of mRNA-decappin | yes | no | 0.893 | 0.927 | 0.561 | 0.0 | |
| Q9LTT9 | 1340 | Varicose-related protein | no | no | 0.929 | 0.967 | 0.525 | 0.0 | |
| Q7ZXT3 | 1391 | Enhancer of mRNA-decappin | N/A | no | 0.221 | 0.222 | 0.275 | 6e-22 | |
| Q1LUT1 | 1384 | Enhancer of mRNA-decappin | yes | no | 0.281 | 0.283 | 0.240 | 4e-21 | |
| Q6P2E9 | 1401 | Enhancer of mRNA-decappin | yes | no | 0.210 | 0.209 | 0.256 | 2e-20 | |
| Q3UJB9 | 1406 | Enhancer of mRNA-decappin | yes | no | 0.225 | 0.224 | 0.245 | 6e-20 | |
| Q3ZAV8 | 1407 | Enhancer of mRNA-decappin | yes | no | 0.225 | 0.223 | 0.242 | 1e-19 | |
| Q9VKK1 | 1354 | Enhancer of mRNA-decappin | yes | no | 0.303 | 0.312 | 0.214 | 5e-11 | |
| Q7PS24 | 341 | Probable cytosolic iron-s | no | no | 0.114 | 0.469 | 0.258 | 8e-05 | |
| Q3SWX8 | 425 | Histone-binding protein R | no | no | 0.124 | 0.407 | 0.26 | 0.0002 |
| >sp|Q9LTT8|VCS_ARATH Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1369 bits (3544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 734/1307 (56%), Positives = 926/1307 (70%), Gaps = 61/1307 (4%)
Query: 107 LYPQQ---IPQPP----SPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSD 159
L+PQ+ P PP SP N NP + + N A ANQ PS LP +
Sbjct: 81 LHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNTNNGAPVANQE----PSHQLPVVNH 136
Query: 160 STVV--IPSAP-PVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP 216
+ + P P+R+ S K+PKGR LIG H+VYD+DVRL GE+QPQLEVTPITKY SDP
Sbjct: 137 NEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDP 196
Query: 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA 276
LV+GRQIAVN+ YICYGLK GNIR+LNI TALRSL RGH+QRVTDMAFFAEDV +LAS
Sbjct: 197 QLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLASV 256
Query: 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336
S+DG+ F+W I+EG + ED+PQI GKIV+A+QIL + D+ HPRVCWH HKQEIL+++IG
Sbjct: 257 SLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKHPRVCWHCHKQEILVVSIGK 316
Query: 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396
+L+ID+ +VG+GE FSAE PL+CP+D+LI+GVQ+VGKHDGE+T+LSMCQW+TTRL S+S
Sbjct: 317 HVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSS 376
Query: 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASA 455
+DGT+KIW DRK+ PL VLRP+DGHPV+ TF+ P P HI+LITGGPLNRE+KIW SA
Sbjct: 377 VDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIWVSA 436
Query: 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515
EEGWLLP+D ESW+CTQTL+LKSS E R E+AFFNQV+AL+ AGL LLANAK+NA+YA+
Sbjct: 437 GEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNALYAV 496
Query: 516 HMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDL 575
H+DYG +P TRMDY++EFTVTMPILS GT P E IV++YCVQT AIQQY LDL
Sbjct: 497 HLDYGSSPVGTRMDYLSEFTVTMPILSFIGTN---DPPEEPIVKVYCVQTLAIQQYTLDL 553
Query: 576 SQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLVPP--ILSS 633
CLPPP+EN LEK+DS+ +R ++ + G K D+ + VP I+ +
Sbjct: 554 CLCLPPPIENMGLEKSDSSVSREANLVE-----GMSEPSGLKPTDLPSVDSVPKPSIIVN 608
Query: 634 STESVPIASRPEGLPSSEVSSLSENASGAETKPSALPS--GNAENIHSASPPLPLSPRLS 691
+ES S PS+E +S + E K S LPS A + ++ P LPLSPRLS
Sbjct: 609 RSESANKLS----FPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLS 664
Query: 692 RKSSGYRSPSNGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRN 751
K SGY +P EP +E G + DYSVDR+ + E+ DV S + D N
Sbjct: 665 SKLSGYHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSN 724
Query: 752 -SAQNDISMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNN 810
+ +D+S + P FKHPTHLVTPSEIL SS+E S ++ +A +QD VNN
Sbjct: 725 VTPDDDVSGMRSPSAFFKHPTHLVTPSEIL-MGVSSAEASITTEDRRDRDANIQD--VNN 781
Query: 811 DAEGVEVEVKVVGETGGLKN-EFNSR-ESHATVTEKKEKSFYSQASDLGIQMARDCCMGT 868
D EVEVK + E +N E N E+ +E +EK F SQ S+L +MARDC T
Sbjct: 782 DPRDTEVEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPST 841
Query: 869 YNVDGIRQASDVEAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQK 928
+G + +A +P G+ D S+ PAK+ KG+KQK
Sbjct: 842 ---EGTFIPGESKAYGQPIKAGDESGVD-SRGGPAKL----------------LKGKKQK 881
Query: 929 GKNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQ 988
KNSQ G SS S + N ADS NE + P TD + QLLAMQ+ +NQ+M++QKE+Q
Sbjct: 882 AKNSQGPGLSSTSSNVANLADSFNEQSQSLSHPMTD-LLPQLLAMQETMNQVMASQKEMQ 940
Query: 989 KQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQIT 1048
+Q+++ + P+ KE KRLE +LGR IEK K+N+DALWAR QEE K+EK RD QQI
Sbjct: 941 RQLSNAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIV 1000
Query: 1049 NLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVS 1108
N TN ++K+L A+ EKT+KKE+AA+GPA+AR++ P +EK++SSAI ESFQ+G+G+KAV+
Sbjct: 1001 NATTNFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVN 1060
Query: 1109 QLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDST 1168
QL+KSV+ KLE TVARQIQAQFQTSGKQALQ+ LRS++E+S+IP+FE +CKAMF+QIDS
Sbjct: 1061 QLDKSVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSA 1120
Query: 1169 FQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAGA 1228
FQKG+ +HT A QQ+F++ HS +A L+++I SA+S+ Q LS ELA+ QR LLA+AAAGA
Sbjct: 1121 FQKGIAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGA 1180
Query: 1229 NTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVS 1288
N+ SLVTQ S GPL L E VEAP+DPT ELSRLI+ERKYEE+FT AL RSDVSIVS
Sbjct: 1181 NSGGSNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVS 1240
Query: 1289 WLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMI 1348
WLCSQVDL G+L+ PLPLSQGVLL+LLQQLACDISK+T RKLAWMTDV AINP+D MI
Sbjct: 1241 WLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMI 1300
Query: 1349 SMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
++H RPIFEQVYQIL H RN P S+ ++IRL+MHVINS+LM CK
Sbjct: 1301 AVHARPIFEQVYQILHHHRNAP---GSDVSAIRLIMHVINSMLMGCK 1344
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As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development, especially during the formation of the shoot (SAM) and root apical meristems. Required for normal patterning of internal tissues of leaves. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTT9|VCR_ARATH Varicose-related protein OS=Arabidopsis thaliana GN=VCR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1351 bits (3497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/1402 (52%), Positives = 950/1402 (67%), Gaps = 105/1402 (7%)
Query: 22 FDMNKLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHY 81
FD+ + KPSSNP YPPPTGP+ Y
Sbjct: 16 FDLGTIFKPSSNP----------------------------------YPPPTGPFLNNQY 41
Query: 82 ----YPSP-----PPPQHQLFQQQQQQQQNRPQILYPQQI---------PQPPSPSHNPN 123
Y P P P +Q QQ + L PQ+ PQ P +HNP
Sbjct: 42 NQQLYAPPGIAAQPSPVNQ--TQQDVSSSSSATNLQPQRTLSYPTPPLNPQSPRVNHNPG 99
Query: 124 PNSTSSSSSGNNLLMAFFANQH--QHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGR 181
+ + ++G + ANQ H + P S P+ + S K+PKGR
Sbjct: 100 THILALLNNGGAV-----ANQEPSHHNEIARAFPGGSG---------PIHVPSGKMPKGR 145
Query: 182 HLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIR 241
L+G H+VYD+DVRL GE+QPQLEVTPITKY SDP LVLGRQIAVN+ YICYGLK G+IR
Sbjct: 146 RLVGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKVYICYGLKGGSIR 205
Query: 242 ILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301
+LNI TALRSL RGH+QRVTDMAFFAEDVHLLAS S+DG+ F+W I+EG + +++ QI G
Sbjct: 206 VLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKISEGSEGDEQSQITG 265
Query: 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361
KIVVA+QIL + D+ HPRVCWH HKQEIL+++IG +L+ID+ +VG+GE FSAE PL+C
Sbjct: 266 KIVVALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCH 325
Query: 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH 421
+D+LI+GVQ+VGKHDGE+T+LSMCQW+TTRL S+S+DGTVKIW DRK+ PL VLRP+DG
Sbjct: 326 LDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTVKIWQDRKTQPLVVLRPHDGL 385
Query: 422 PVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480
PVN F+ P P HI+LITGGPLNRE+KIW SA EEGWLLP+D ESW+CTQTL+LKSS
Sbjct: 386 PVNSAIFVTSPERPDHIILITGGPLNREIKIWVSAGEEGWLLPADTESWRCTQTLDLKSS 445
Query: 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPI 540
E + E AFFNQV+AL+ AGL LLANA++NAIY++H+DYG +P T MDY++EFTVTMPI
Sbjct: 446 TEPQAEKAFFNQVIALSEAGLLLLANARRNAIYSVHLDYGSSPVETLMDYLSEFTVTMPI 505
Query: 541 LSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFD 600
LS G T+ P+ E V++YCVQT AIQQY LDL C+PPP EN EK+DS +R +
Sbjct: 506 LSFIG--TNDHPE-EPFVKVYCVQTLAIQQYTLDLFLCMPPPRENVGFEKSDSTVSREAN 562
Query: 601 VANPDGSASLESSHGTKSADVGTTSLVPP--ILSSSTESVPIASRPEGLPSSEVSSLSEN 658
+ ++LE+S G K ++ + VP IL + +E+ + S P G S+ ++ +
Sbjct: 563 LVE----STLETS-GMKPTELPSVGSVPKPSILVNRSENANMLSFPAGPASAGITPPAIV 617
Query: 659 ASGAETKPSALPS--GNAENIHSASPPLPLSPRLSRKSSGYRSPSNGFEPSAQPNEHGSE 716
E K S +PS + ++ ++ SP LPLSPRLS K SGY +P FE ++ G +
Sbjct: 618 PPNGEPKTSGMPSETSDVDSAYAPSPQLPLSPRLSSKLSGYHTPVEAFEQVLPHHKLGGK 677
Query: 717 QAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRN-SAQNDISMVPDPPVVFKHPTHLVT 775
+ DY R+T+ + DV S +N D N + +D+S + P FK PTHLVT
Sbjct: 678 TSSADYFYVRQTDDVGGRNLDVSSVEENCRSKDTNVTPDDDVSGIRSPSAFFKQPTHLVT 737
Query: 776 PSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGLKN-EFNS 834
PSEIL SS+E S ++ +A +++ VNNDA G+EVE+K VGE +N E N
Sbjct: 738 PSEIL-MGVSSTEASITTEDKRDRDANIEE--VNNDARGLEVELKEVGEAQTSQNGEINY 794
Query: 835 RESHATVT-EKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASDVEAQDRPSNNGEVE 893
E+ T E +E F SQAS+L +MARD T +G D A +P G+
Sbjct: 795 HETTENHTSESRENIFCSQASNLSTEMARDRHPIT---EGSAIPGDSMAYGQPLQAGDER 851
Query: 894 EQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISGTSSPSPSPYNSADSSNE 953
D S+D AK+ S +S ++ + S KG+KQK KNSQ G SS S + N ADS NE
Sbjct: 852 GLD-SRDVSAKLPESGSSSGLVATNS---KGKKQKAKNSQGPGLSSTSSNVANLADSFNE 907
Query: 954 PACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRS 1013
+ P D + QLLA+Q+ + Q+M++QKE+Q+Q+++ V+ P+ KEGK+LE +LGR
Sbjct: 908 QSQSLNHPMAD-LLPQLLALQETMTQVMASQKEMQRQLSNAVTGPIVKEGKKLEVALGRM 966
Query: 1014 IEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAA 1073
IEK K+N+DALWA FQEE K+EK RD QQI N TN +K+L A+ EKT+KKE A+
Sbjct: 967 IEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMNETTNFTSKELNAMFEKTMKKEFAS 1026
Query: 1074 VGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTS 1133
VGP +AR ++P +EK++SSAI ESFQ+G+G+KAV+QLEKSV+SKLETTVARQIQAQFQTS
Sbjct: 1027 VGPTLARVVTPVIEKTVSSAITESFQRGIGDKAVNQLEKSVNSKLETTVARQIQAQFQTS 1086
Query: 1134 GKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAI 1193
G+Q LQ+ LRS++E+S+IP+FE SCK MFEQ+DST QKG+ KHT+A QQ+ ++ S +A
Sbjct: 1087 GRQVLQEGLRSSMESSVIPSFERSCKTMFEQVDSTLQKGIGKHTSATQQRIDSGQSQLAH 1146
Query: 1194 ALRDAINSATSITQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVE 1253
LR+ I+SA+S+TQ L+ ELA+ QR LA+ AAG+N LVTQ SNGPL L E VE
Sbjct: 1147 TLRETISSASSVTQALNRELAESQRNRLALTAAGSN-----PLVTQLSNGPLGALLEKVE 1201
Query: 1254 APLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLL 1313
AP+DPT ELSRLI+ERKYEE+FT AL RSDVSIVSWLCSQVDL G+L+ PLPLSQGVLL
Sbjct: 1202 APMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLL 1261
Query: 1314 ALLQQLACDISKETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTS 1373
+LLQQLACDIS +T RKL WMTDV AINP+D MI++H RPIFEQVYQIL H RN P
Sbjct: 1262 SLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIAVHARPIFEQVYQILHHHRNAP--- 1318
Query: 1374 ASEANSIRLLMHVINSVLMSCK 1395
S+ +++RL+MHVINS+LMSCK
Sbjct: 1319 GSDVSAVRLIMHVINSLLMSCK 1340
|
As a component of the decapping complex, may play a role in the degradation of mRNAs (By similarity). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7ZXT3|EDC4_XENLA Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis GN=edc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 68/377 (18%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN----IRILNIITALRSLLRGHTQ 258
++++ P+ KY + G IAV+ +YI Y + N +R+L++ TA R LL+G T
Sbjct: 114 KVKIQPVAKYDWEQKYYCGNLIAVSNDYIAYATRGANGSAMVRVLSLTTAERILLKGITG 173
Query: 259 RVTDMAFFAEDVHLLASASVDGRFFIWNI--TEGPDEEDKPQILGKIVVAIQ-----ILA 311
VTD+AF + LA G F+W + T G ++D IVV I+ +L
Sbjct: 174 SVTDLAFAHLKSNHLACLDEAGSLFVWQLTMTNGKIQDD-------IVVHIRRPENTVL- 225
Query: 312 DGDSVHPRVCWHPH----KQEILMLAIGNRI--LKIDSNRVGKGERFSAEEPLKCPVD-- 363
S+ R+ W P+ +E ++ I L D V E PVD
Sbjct: 226 ---SIFRRIIWCPYIPEENEENVVDDTSQTIALLHEDKAEVWDLEIIQTNHN-TWPVDVS 281
Query: 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPY 418
E+ G +V H G ++E ++ T LA+AS DG VK W + + P L +P+
Sbjct: 282 EIKEGFIIVKGHSGRLSEGALSP-DGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPH 340
Query: 419 DGHPVNCVTFLIGPHPQH------IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472
+G P++C+ F Q LITG NRELK+W + SW
Sbjct: 341 NGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKVWCTV------------SWTSL 388
Query: 473 QTLELKSSAELRLEDAFFNQVV-----ALNRAGLFL-LANAKKNAIYAIHMDYGPNPAST 526
QT++ D F + V+ +L+ + FL L + ++ +Y + ++ +
Sbjct: 389 QTIQFSP-------DPFSSGVLPGLKASLDLSAEFLILTDVQRKVLYVMELNQNQDEGKA 441
Query: 527 RMDYIAEFTVTMPILSL 543
I+EF +T P+LS
Sbjct: 442 TFTSISEFLLTHPVLSF 458
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Xenopus laevis (taxid: 8355) |
| >sp|Q1LUT1|EDC4_DANRE Enhancer of mRNA-decapping protein 4 OS=Danio rerio GN=edc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 199/494 (40%), Gaps = 102/494 (20%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN----IRILNIITALRSLLRGHTQ 258
++++ P+ KY + G IAV+ Y+ Y ++ N IR+L++ + RSLL+G T
Sbjct: 115 KVKIQPVAKYDWEHKYYYGNLIAVSNTYLAYAIRGANNHSMIRVLHLSSTERSLLKGFTG 174
Query: 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD-SVH 317
VTD+AF D LL G FIW +T +I +++V I+ D + +
Sbjct: 175 AVTDLAFAHLDSTLLGCVDEAGNMFIWQLTS-----HSSKIQDEVIVHIRRPEDTPLNSN 229
Query: 318 PRVCWHPHKQE-----------ILMLAIGNR--ILKIDSNRVGKGERFSAEEPLKCPVD- 363
R+ W P E L L +R + +D R PVD
Sbjct: 230 RRLIWCPFIPEDNDESPEDACQTLALLHEDRAEVWDLDILRSNNS---------SWPVDA 280
Query: 364 -ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRP 417
EL G + H I+E ++ T LA+AS DG VK W + + P L +P
Sbjct: 281 TELKEGFITIRGHAARISEGALSPDGTV-LATASHDGYVKFWQIYIEGQDQPRCLHEWQP 339
Query: 418 YDGHPVNCVTFLIGPHPQH------IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471
++G P++C+ F Q LITG N+ELK+W + SW C
Sbjct: 340 HNGQPLSCLLFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTV------------SWTC 387
Query: 472 TQTLELKSSAELRLEDAFFNQVVALNRAGL------FLLANAKKNAIYAIHMDYGPNPAS 525
QT+ D F V+ +A L +L++ ++ +Y + +
Sbjct: 388 LQTIRFSP-------DPFNCGVLPSLKASLDLSAEFLILSDVQRKVLYVMELLQDQEKGR 440
Query: 526 TRMDYIAEFTVTMPIL-------------------------SLTGTTTDASPDGEHIVQI 560
++EF +T P+L S+T + + +QI
Sbjct: 441 ASFTAVSEFLLTHPVLSFGVQDVSRARLRHTEVLPPEEESESMTAEGNQGTSESRSGIQI 500
Query: 561 --YCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLES-SHGTK 617
YCV T+++Q + P +++ L S + F ++P ++E+ S +
Sbjct: 501 KLYCVHTKSLQDVQIWFQ---PNQGDSSSLFMPQSGSQDGFSFSDPLADLNVEAMSSDKE 557
Query: 618 SADVGTTSLVPPIL 631
S D G+ + + IL
Sbjct: 558 SGDSGSQNDLSKIL 571
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Danio rerio (taxid: 7955) |
| >sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 159/339 (46%), Gaps = 46/339 (13%)
Query: 1063 LEKTLKKEIA-AVGPAVARAISPT---LEKSISSAIMESFQKGVGEKAVSQLEKSVSSKL 1118
LE++++ EI V P V+R++ P L S+++ + + +G ++ +S+L KS L
Sbjct: 1039 LERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKL--TAVEGSMKENISKLLKS--KNL 1094
Query: 1119 ETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKG------ 1172
+AR Q +Q A R ++ ++PAFE SC+AMF+QI+ +F+ G
Sbjct: 1095 TDAIARAAADTLQG----PMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQ 1150
Query: 1173 -LIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADG--------------- 1216
L H + + + + A P+ LR +++ S T+ ++ +A
Sbjct: 1151 QLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVAGSVRAEVQHQLHVAVGS 1210
Query: 1217 -QRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPT-----------KELSR 1264
Q +LA + +L Q + + + M A P + +
Sbjct: 1211 LQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQ 1270
Query: 1265 LIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDIS 1324
L+ + +AF AL +D+++V ++C VD + P PLSQ VLL+L+QQLA D+
Sbjct: 1271 LLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLG 1330
Query: 1325 KETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQIL 1363
T KL+++ + + ++ +DP+ H+ + QV Q L
Sbjct: 1331 TRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKL 1369
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Component of a complex containing DCP2 and DCP1A which functions in decapping of ARE-containing mRNAs. Promotes complex formation between DCP1A and DCP2. Enhances the catalytic activity of DCP2 (in vitro). Homo sapiens (taxid: 9606) |
| >sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus musculus GN=Edc4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 170/363 (46%), Gaps = 48/363 (13%)
Query: 1063 LEKTLKKEIA-AVGPAVARAISPT---LEKSISSAIMESFQKGVGEKAVSQLEKSVSSKL 1118
LE++++ EI V P V+R++ P L S+++ + + +G ++ +S+L KS L
Sbjct: 1044 LERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKL--TAVEGSMKENISKLLKS--KNL 1099
Query: 1119 ETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKG------ 1172
+AR Q +Q A R ++ ++PAFE SC+AMF+QI+ +F+ G
Sbjct: 1100 TDAIARAAADTLQG----PMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQ 1155
Query: 1173 -LIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADG--------------- 1216
L H + + + + A P+ LR +++ S T+ ++ ++
Sbjct: 1156 QLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSVRAEVQHQLHVAVGS 1215
Query: 1217 -QRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPT-----------KELSR 1264
Q +LA + +L Q + + + M A P + +
Sbjct: 1216 LQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQ 1275
Query: 1265 LIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDIS 1324
L+ + +AF AL +D+++V ++C VD + P PLSQ VLL+L+QQLA D+
Sbjct: 1276 LLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLG 1335
Query: 1325 KETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGH--QRNLPSTSASEANSIRL 1382
+ KL+++ + + ++ +DP+ H+ + QV Q L Q + ++ + A + L
Sbjct: 1336 TRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQADPHNSLSKAARRLSL 1395
Query: 1383 LMH 1385
++H
Sbjct: 1396 MLH 1398
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Component of a complex containing DCP2 and DCP1A which functions in decapping of ARE-containing mRNAs. Promotes complex formation between DCP1A and DCP2. Enhances the catalytic activity of DCP2 (in vitro). Mus musculus (taxid: 10090) |
| >sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattus norvegicus GN=Edc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 169/363 (46%), Gaps = 48/363 (13%)
Query: 1063 LEKTLKKEIA-AVGPAVARAISPT---LEKSISSAIMESFQKGVGEKAVSQLEKSVSSKL 1118
LE++++ EI V P V+R++ P L S+++ + + +G ++ +S+L KS L
Sbjct: 1045 LERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKL--TAVEGSMKENISKLLKS--KNL 1100
Query: 1119 ETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKG------ 1172
+AR Q +Q A R ++ ++PAFE SC+AMF+QI+ +F+ G
Sbjct: 1101 TDAIARAAADTLQG----PMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQ 1156
Query: 1173 -LIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADG--------------- 1216
L H + + + + A P+ LR +++ + T+ ++ ++
Sbjct: 1157 QLDSHMKSRKAREQEAREPVLAQLRGLVSTLQNATEQMAATVSSSVRAEVQHQLHVAVGS 1216
Query: 1217 -QRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPT-----------KELSR 1264
Q +LA + +L Q + + + M A P + +
Sbjct: 1217 LQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQ 1276
Query: 1265 LIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDIS 1324
L+ + +AF AL +D+++V ++C VD + P PLSQ VLL+L+QQLA D+
Sbjct: 1277 LLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLG 1336
Query: 1325 KETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGH--QRNLPSTSASEANSIRL 1382
+ KL+++ + + ++ +DP+ H+ + QV Q L Q + ++ A + L
Sbjct: 1337 TRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQADPHNSLGKAARRLSL 1396
Query: 1383 LMH 1385
++H
Sbjct: 1397 MLH 1399
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Component of a complex containing DCP2 and DCP1A which functions in decapping of ARE-containing mRNAs. Promotes complex formation between DCP1A and DCP2. Enhances the catalytic activity of DCP2 (in vitro). Rattus norvegicus (taxid: 10116) |
| >sp|Q9VKK1|EDC4_DROME Enhancer of mRNA-decapping protein 4 homolog OS=Drosophila melanogaster GN=Ge-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 101/471 (21%), Positives = 191/471 (40%), Gaps = 48/471 (10%)
Query: 956 CI--SGAPSTDATMSQLL----AMQDMLNQMMSTQKEIQKQMNSVVSAPVNKE------- 1002
C+ SG +A M L+ A +N++ + ++QKQ + + ++
Sbjct: 885 CVDSSGTGELNAKMELLIDLVKAQSKQINKLENEVNKLQKQQEAAAALHSKQDTSLEPKN 944
Query: 1003 ----GKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTINKD 1058
++E L + +E+ +K + + E A E R+ + ++ +
Sbjct: 945 LSQLAYKIEMQLSKLMEQYLKRYENEHKKKLTEFLAARESQNRELRDSVLQVLNQYVMNH 1004
Query: 1059 LPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMES---FQKGVGEKAVSQLEKSVS 1115
I+ L E+ A L+ + I++ F K V E ++Q+ KS
Sbjct: 1005 FTDIIGNVLNMELQRQLLPRVNANMDQLQAQMQVEIVQKLSVFDKTVKEN-IAQVCKS-- 1061
Query: 1116 SKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIK 1175
+ T + + QTS LQ A ++ +++IPA+E S + MF+Q+ F G+
Sbjct: 1062 KQFLDTFGKSVLIGVQTS----LQTAFIESMSSTLIPAYEKSSQNMFKQLHDAFSVGIKD 1117
Query: 1176 HTTAIQQQFETAHSPMAIALR-DAINSATSITQTLSGELADGQRKLL--AMAAAGANTKT 1232
+ P A + + IN+ S+ + L R L AM K+
Sbjct: 1118 FMVQFNTYLQHMPQPQAGSGNTEEINNKLSMLKQLVESSLHKHRTELTDAMLETQREVKS 1177
Query: 1233 GTSLVTQSSNGPL-AGLHEMVEA--------------PLDPTKELSRLIAERKYEEAFTG 1277
L+ + + A L + +EA P D + +L+ + +AF
Sbjct: 1178 LEILLARQVQETIRAELRKHMEAQNVAMRSQAATPAPPYDLRDSIKQLLMAGQINKAFHQ 1237
Query: 1278 ALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDV 1337
AL +D+ +V + D + L Q VLL+L+QQ++ D++ K ++ +
Sbjct: 1238 ALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTNHNELKQRYLNEA 1297
Query: 1338 AVAINPADPMISMHVRPIFEQVYQ-ILGHQRNLPSTSASEANSIRLLMHVI 1387
+AIN ADP+ H + ++Y+ +N P S+ +++RLLM I
Sbjct: 1298 LLAINMADPITREHAPKVLTELYRNCQQFIKNSPKN--SQFSNVRLLMKAI 1346
|
In the process of mRNA degradation, seems to play a role in mRNA decapping. Required for silencing a subset of endogenous miRNA targets. Drosophila melanogaster (taxid: 7227) |
| >sp|Q7PS24|CIAO1_ANOGA Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Anopheles gambiae GN=Ciao1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
L GH V + + + +LLA+ S D +IW I PD+ED+ + + +L
Sbjct: 100 LEGHDNEVKSVTW-SRSGNLLATCSRDKSVWIWEIHHAPDQEDEYE-------CVAVLNG 151
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
+VCWHP ++++L A + +++ + E + EPL+
Sbjct: 152 HTQDVKKVCWHP-QEDLLASASYDNTIRMYRQDLADSE-WEMLEPLE------------- 196
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIG 431
H + +S RLAS S D TVK+W L + P G CV L G
Sbjct: 197 -SHSSTVWSISF-DATGQRLASCSEDTTVKVWQQYGPDNALGIPCPDRGTIWKCVCTLSG 254
Query: 432 PHPQHI 437
H + +
Sbjct: 255 YHSRSV 260
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Anopheles gambiae (taxid: 7165) |
| >sp|Q3SWX8|RBBP7_BOVIN Histone-binding protein RBBP7 OS=Bos taurus GN=RBBP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 27/200 (13%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
LRGH + +++ + L SAS D +W+I GP E GKIV A I
Sbjct: 172 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE-------GKIVDAKAIFTG 224
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
+V V WH + + ++ L I R + S LV
Sbjct: 225 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPS----------------HLV 268
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432
H E+ LS + LA+ S D TV +WD R L ++ H P
Sbjct: 269 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSP 326
Query: 433 HPQHIVLITGGPLNRELKIW 452
H + I+ +G +R L +W
Sbjct: 327 HNETILASSG--TDRRLNVW 344
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1395 | ||||||
| 255568504 | 1440 | nucleotide binding protein, putative [Ri | 0.961 | 0.931 | 0.669 | 0.0 | |
| 359496844 | 1373 | PREDICTED: enhancer of mRNA-decapping pr | 0.915 | 0.930 | 0.719 | 0.0 | |
| 147766032 | 1404 | hypothetical protein VITISV_038739 [Viti | 0.915 | 0.909 | 0.7 | 0.0 | |
| 224089507 | 1440 | predicted protein [Populus trichocarpa] | 0.978 | 0.947 | 0.673 | 0.0 | |
| 224124754 | 1417 | predicted protein [Populus trichocarpa] | 0.969 | 0.954 | 0.667 | 0.0 | |
| 296080849 | 1171 | unnamed protein product [Vitis vinifera] | 0.822 | 0.979 | 0.689 | 0.0 | |
| 356558011 | 1405 | PREDICTED: enhancer of mRNA-decapping pr | 0.866 | 0.860 | 0.661 | 0.0 | |
| 356532380 | 1407 | PREDICTED: enhancer of mRNA-decapping pr | 0.866 | 0.859 | 0.654 | 0.0 | |
| 225462062 | 1401 | PREDICTED: enhancer of mRNA-decapping pr | 0.963 | 0.959 | 0.609 | 0.0 | |
| 449461114 | 1417 | PREDICTED: enhancer of mRNA-decapping pr | 0.863 | 0.850 | 0.622 | 0.0 |
| >gi|255568504|ref|XP_002525226.1| nucleotide binding protein, putative [Ricinus communis] gi|223535523|gb|EEF37192.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 974/1455 (66%), Positives = 1128/1455 (77%), Gaps = 114/1455 (7%)
Query: 22 FDMNKLLKPSSN------------------------PMNMIPNSTNLTTSPSFPSPSSVS 57
FD+NKLLKPS++ NS LTTSPSFP P++V
Sbjct: 19 FDVNKLLKPSTSTIINNMNMNMNMMIQPSLQPPQPQQQPPPSNSNPLTTSPSFPLPATVP 78
Query: 58 SPSPYLTPSSSYPPPTGPY-------------------------PPYHYYPSPPPPQHQL 92
SP PY+TPSSSYPPPTGPY P+ + P H L
Sbjct: 79 SP-PYITPSSSYPPPTGPYHHPHYLSPYPPPPPPLQQQPQQLHYHPHQH------PSHFL 131
Query: 93 FQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPS- 151
QQ NRPQ PP P SS+S+ +LM NQ+Q P
Sbjct: 132 SNIHHHQQHNRPQ---------PPPP--------ISSNSNPVGVLMDILTNQNQQPQPQP 174
Query: 152 ----------PTLPPPSDSTVVIP-------SAPPVRLRSSKVPKGRHLIGNHSVYDIDV 194
P+ PPP T+ P S+ P+R+ S+K+PKGRHLIG+H +YDIDV
Sbjct: 175 QPPPSPNLIIPSAPPPV--TLASPTHQLQHSSSSPIRMLSTKLPKGRHLIGDHLLYDIDV 232
Query: 195 RLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR 254
RL GEVQPQLEVTPITKY+SDPGL+LGRQIAVNRNYICYGLK G IRILNI TALRSLLR
Sbjct: 233 RLPGEVQPQLEVTPITKYVSDPGLLLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLR 292
Query: 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314
GH Q+VTDMAFFAEDVHLLAS +DGR FI I EGPDEE+KPQI +IV+A+QI+A+G+
Sbjct: 293 GHYQKVTDMAFFAEDVHLLASTCIDGRVFIRKINEGPDEEEKPQIFERIVLALQIIAEGE 352
Query: 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374
SVHPRVCWHPHKQEIL++AI NRILKID+ +VGK E FSAE+PL CP+D+LI+GVQL GK
Sbjct: 353 SVHPRVCWHPHKQEILIVAIRNRILKIDTIKVGKAEGFSAEKPLNCPIDKLIDGVQLAGK 412
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP-H 433
HDGE+TELSMCQW+TTRLASAS DGTVKIW+DRK+ PLA+LRP+DG+PVN V FL P
Sbjct: 413 HDGEVTELSMCQWMTTRLASASADGTVKIWEDRKAVPLAILRPHDGNPVNSVAFLTAPDR 472
Query: 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQV 493
P HIVLITGGPLN+E+KIWASA EEGWLLPSD ESW+C QTL L SSAE +EDAFFNQV
Sbjct: 473 PDHIVLITGGPLNQEVKIWASASEEGWLLPSDAESWQCRQTLTLNSSAESSVEDAFFNQV 532
Query: 494 VALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPD 553
VAL RAGLFLLANAKKNAIYAIH++YG PA+TRMDYIAEFTVTMPILSLTGT+ D+ P
Sbjct: 533 VALPRAGLFLLANAKKNAIYAIHIEYGSYPAATRMDYIAEFTVTMPILSLTGTS-DSLPS 591
Query: 554 GEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESS 613
GE IVQ+YCVQTQAIQQYALDLSQCLPPPLEN ELEK +++ + AFD A+ DG A LE S
Sbjct: 592 GERIVQVYCVQTQAIQQYALDLSQCLPPPLENMELEKMETSVSCAFDAASSDGPAVLEPS 651
Query: 614 HGTKSADV----GTTSLVPPILSSSTE--SVPIASRPEGLPSSEVSSLSENASGA-ETKP 666
HG K+ +V GT + P ++SSS+E S P AS PE L SSEV+SL +N + A +TK
Sbjct: 652 HGNKTTEVSLSKGTNT--PSMISSSSENASAPTASHPESLASSEVTSLPDNVTSAIDTKV 709
Query: 667 SALPSGNAENI-HSASPPLPLSPRLSRKSSGYRSPSNGFEPSAQPNEHGSEQAVTDYSVD 725
SALPS ++ I ++ SPPLPLSP+LSRK SG++ P + EPS Q NEHG++Q V DY V+
Sbjct: 710 SALPSHSSTEITNNVSPPLPLSPQLSRKLSGFQGPQSSIEPSVQLNEHGADQRVQDYLVE 769
Query: 726 RRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVPDPPVVFKHPTHLVTPSEILSTAAS 785
+++KE M D PSSGD+L K ++N AQ DIS+VP+P V+FKHPTHLVTPSEILS AAS
Sbjct: 770 HIMDSTKEIMTDTPSSGDSLRKSEKNMAQTDISVVPEPLVLFKHPTHLVTPSEILSRAAS 829
Query: 786 SSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGLK-NEFNS-RESHATVTE 843
S ENS Q +NVGEAKVQD +VNND E +EVEVKVVGETG + N F+ RESH T+ +
Sbjct: 830 S-ENSHIIQGINVGEAKVQDVIVNNDNESIEVEVKVVGETGSNQSNNFDMPRESHITIPD 888
Query: 844 KKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASD---VEAQDRPSNNGEVEEQDMSKD 900
KKEKSFYSQASDL IQM RDCCM YN G++Q + E DRP N EEQDM K+
Sbjct: 889 KKEKSFYSQASDLSIQMVRDCCMEAYNSVGMQQVGEGSVAEVPDRPLNASADEEQDMRKN 948
Query: 901 TPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISGTSSPSPSPYNSADSSNEPACISGA 960
AKVG SE + V+ QS +P+ KG+KQKGK SQ+SG SSPSPSP+NS DSSNEP C SG
Sbjct: 949 LNAKVGESEIATVVPQSAAPSTKGKKQKGKASQLSGLSSPSPSPFNSTDSSNEPGCSSGV 1008
Query: 961 PSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKA 1020
S+DA + QL AMQDML+Q++S QKE+QKQ+N +VS PV KEGKRLEASLGRSIEKVVKA
Sbjct: 1009 QSSDAALFQLSAMQDMLDQLLSMQKEMQKQINMMVSVPVTKEGKRLEASLGRSIEKVVKA 1068
Query: 1021 NSDALWARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVAR 1080
N+DALWAR QEEN KHEKLERDR QQ+TNLI+N +NKDLP+ +EKTLKKEIAAVGPAVAR
Sbjct: 1069 NTDALWARLQEENTKHEKLERDRTQQLTNLISNCVNKDLPSSVEKTLKKEIAAVGPAVAR 1128
Query: 1081 AISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQD 1140
A++P LEKSIS AI ESFQKGVGEKAVSQLEKSVSSKLE TVARQIQ+QFQTSGKQALQD
Sbjct: 1129 AVTPALEKSISLAITESFQKGVGEKAVSQLEKSVSSKLEGTVARQIQSQFQTSGKQALQD 1188
Query: 1141 ALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAIN 1200
ALRS+LE +IIPAFEMSCKAMF+QID+TFQKGLI H + QQQF++A+S +AI LRDAIN
Sbjct: 1189 ALRSSLEAAIIPAFEMSCKAMFDQIDATFQKGLINHLNSTQQQFDSANSHLAITLRDAIN 1248
Query: 1201 SATSITQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTK 1260
SA+SIT+TLSGELA+GQRKLLA+AAAGAN+K G S + SNGPL GLHEM EAPLDPTK
Sbjct: 1249 SASSITRTLSGELAEGQRKLLALAAAGANSKVGNSSL---SNGPLVGLHEMAEAPLDPTK 1305
Query: 1261 ELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLA 1320
ELSR+++E K+EEAFT AL RSDVSIVSWLC QV+L GILS VPLPLSQGVLLAL+QQLA
Sbjct: 1306 ELSRMLSEHKFEEAFTAALQRSDVSIVSWLCGQVNLQGILSMVPLPLSQGVLLALMQQLA 1365
Query: 1321 CDISKETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSI 1380
CDI+KETPRKLAWMT+VAVAINPADPMI+MHVRPI +QVYQIL HQRNL + SASEA SI
Sbjct: 1366 CDINKETPRKLAWMTEVAVAINPADPMIAMHVRPILDQVYQILRHQRNLATISASEAASI 1425
Query: 1381 RLLMHVINSVLMSCK 1395
RLLMHVINSV+MSCK
Sbjct: 1426 RLLMHVINSVIMSCK 1440
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496844|ref|XP_002269564.2| PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1815 bits (4701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 934/1299 (71%), Positives = 1085/1299 (83%), Gaps = 22/1299 (1%)
Query: 110 QQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPP 169
QQ P PSPS N + ++ +N M F A PP ++P + +V P PP
Sbjct: 84 QQQPHLPSPSPNSGARLMALLTTPSNPPMPFPATA----PPEFSMPTTTPINLVTPQPPP 139
Query: 170 VRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229
+RL S+K PKGRHLIG+ VYD+DVRL GEVQPQLEVTPITKY+SDPGLV+GRQIAVNR
Sbjct: 140 LRLLSNKFPKGRHLIGDRVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVVGRQIAVNRT 199
Query: 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289
YICYGLKLGNIR+LNI TALR+LLRGHTQRVTDMAFFAEDV LLASAS+DG FIW I E
Sbjct: 200 YICYGLKLGNIRVLNINTALRALLRGHTQRVTDMAFFAEDVPLLASASIDGLVFIWRINE 259
Query: 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349
GP+E+DK I GKIV+AIQI+ G SVHPRVCWH HKQEIL++AIGNRILKIDS +VGKG
Sbjct: 260 GPNEDDKAHITGKIVIAIQIVGGGTSVHPRVCWHSHKQEILVVAIGNRILKIDSTKVGKG 319
Query: 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409
E FSAEEPLKCP+D+LI+GVQ VGKHDGE+TELSMCQW+TTRLASAS DGTVKIW+DRK
Sbjct: 320 EVFSAEEPLKCPIDKLIDGVQFVGKHDGEVTELSMCQWMTTRLASASTDGTVKIWEDRKL 379
Query: 410 TPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468
PLAVLRP+DG PVN VTFL PH P HI+LIT GPLNRE+K+WASA +EGWLLPSDIES
Sbjct: 380 VPLAVLRPHDGQPVNSVTFLTAPHRPDHIILITAGPLNREVKLWASASDEGWLLPSDIES 439
Query: 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRM 528
W+CTQTL+L+SSAE R EDAFFNQVVAL RAGLFLLANAKKNA+YA+H++YGP PA+TR+
Sbjct: 440 WQCTQTLDLRSSAESRAEDAFFNQVVALPRAGLFLLANAKKNAMYAVHIEYGPYPAATRL 499
Query: 529 DYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAEL 588
DYIAEFTVTMPILSLTGT+ D+ PDGEH+VQ+YCVQT AIQQYALDLSQCLPPPLEN EL
Sbjct: 500 DYIAEFTVTMPILSLTGTS-DSLPDGEHVVQVYCVQTHAIQQYALDLSQCLPPPLENLEL 558
Query: 589 EKTDSNATRAFDVANPDGSASLESSHGTKSAD--VGTTSLVPPILSSSTESVPIASRPEG 646
EKTDS+ + F+ AN +LE SHG+K + VG + +P ILSSS+E+ PIAS P
Sbjct: 559 EKTDSSTSCGFNAANSAACDTLELSHGSKHIEMSVGGATPLPSILSSSSENGPIASHPVN 618
Query: 647 LPSSEVSSLSENA-SGAETKPSALPSGNA-ENIHSASPPLPLSPRLSRKSSGYRSPSNGF 704
L SSEV+SL E A SG E+K SALPS + ENIH+ASPPLPLSPRLS K SG+RSPSN F
Sbjct: 619 LASSEVTSLRETATSGMESKSSALPSSISSENIHAASPPLPLSPRLSGKLSGFRSPSNSF 678
Query: 705 EPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVPDPP 764
+PS + HG +Q + DYS+DRR +T +E AD P SG+NL K ++N AQNDISMVP+PP
Sbjct: 679 DPSPPLSNHGGDQPILDYSIDRRMDTVRENFADAPPSGENLRKDEKNIAQNDISMVPNPP 738
Query: 765 VVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGE 824
++FKHPTHL+TPSEILS +SSE+SQ +Q MNVGEAK+ D VVNND E +E+EVKVVGE
Sbjct: 739 IMFKHPTHLITPSEILS---ASSESSQITQGMNVGEAKIHDMVVNNDPESIELEVKVVGE 795
Query: 825 TG--GL--KNEFNS-RESHATVTEKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASD 879
TG G+ +E RESH V EKKEKSF SQASDL IQM RDCC+ TY ++G RQ SD
Sbjct: 796 TGIPGISKNDELECQRESHVIVAEKKEKSFCSQASDLSIQMTRDCCVETYTIEGARQVSD 855
Query: 880 VE---AQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISG 936
A D N + + QD ++D AK+G S M++ QS P+ KG+KQKGKNSQ+SG
Sbjct: 856 ANVTAAVDLSPNTADEDVQDSTRDVSAKMGESTTPMIVPQSSIPS-KGKKQKGKNSQVSG 914
Query: 937 TSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVS 996
SSPSPSP+NS DSSNEP+ S PS DA SQL +MQ+ML+Q+++ QKE+QKQMN +V+
Sbjct: 915 PSSPSPSPFNSTDSSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVNMQKEMQKQMNVMVA 974
Query: 997 APVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTIN 1056
PV KE +RLEASLGRS+EKVVKANSDALWARFQEEN KHEKL+RDRMQQ+TNLITN IN
Sbjct: 975 VPVTKESRRLEASLGRSMEKVVKANSDALWARFQEENTKHEKLDRDRMQQLTNLITNCIN 1034
Query: 1057 KDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSS 1116
KDLP++LEKT+KKEIAAVGPAVARAI+P +EK+ISSAI ESFQKG+G+K V+QLEK V+S
Sbjct: 1035 KDLPSMLEKTIKKEIAAVGPAVARAITPVIEKTISSAISESFQKGLGDKVVNQLEKLVNS 1094
Query: 1117 KLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKH 1176
KLE+ +ARQIQ QFQTSGKQALQDALRS LE ++IPAFE++CK MF+Q+DSTFQKGLIKH
Sbjct: 1095 KLESAMARQIQIQFQTSGKQALQDALRSTLEAAVIPAFEIACKTMFDQVDSTFQKGLIKH 1154
Query: 1177 TTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAGANTKTGTSL 1236
T+ +QQQFE+ HS +A+ALRDAINSA+SIT+TLSGELADGQR++LA+AAAGAN+K L
Sbjct: 1155 TSGVQQQFESTHSTLAVALRDAINSASSITKTLSGELADGQRQILAIAAAGANSKAVNPL 1214
Query: 1237 VTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDL 1296
VTQ SNGPLAGLHEM EAPLDPTKELSRLI+ERK+EEAFTGALHRSDVSIVSWLCS VDL
Sbjct: 1215 VTQLSNGPLAGLHEMAEAPLDPTKELSRLISERKFEEAFTGALHRSDVSIVSWLCSLVDL 1274
Query: 1297 PGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMISMHVRPIF 1356
GILS VPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMI++HVRPIF
Sbjct: 1275 QGILSLVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMIALHVRPIF 1334
Query: 1357 EQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
EQVYQILGHQRNLP+TSA+EA+SIRLLMHV+NSVL+SCK
Sbjct: 1335 EQVYQILGHQRNLPTTSAAEASSIRLLMHVVNSVLLSCK 1373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766032|emb|CAN70211.1| hypothetical protein VITISV_038739 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1792 bits (4642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1330 (70%), Positives = 1082/1330 (81%), Gaps = 53/1330 (3%)
Query: 110 QQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPP 169
QQ P PSPS N + ++ +N M F A PP ++P + +V P PP
Sbjct: 84 QQQPHLPSPSPNSGARLMALLTTPSNPPMPFPATA----PPEFSMPTTTPINLVTPQPPP 139
Query: 170 VRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229
+RL S+K PKGRHLIG+ VYD+DVRL GEVQPQLEVTPITKY+SDPGLV+GRQIAVNR
Sbjct: 140 LRLLSNKFPKGRHLIGDRVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVVGRQIAVNRT 199
Query: 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289
YICYGLKLGNIR+LNI TALR+LLRGHTQRVTDMAFFAEDV LLASAS+DG FIW I E
Sbjct: 200 YICYGLKLGNIRVLNINTALRALLRGHTQRVTDMAFFAEDVPLLASASIDGLVFIWRINE 259
Query: 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349
GP+E+DK I GKIV+AIQI+ G SVHPRVCWH HKQEIL++AIGNRILKIDS +VGKG
Sbjct: 260 GPNEDDKAHITGKIVIAIQIVGGGXSVHPRVCWHSHKQEILVVAIGNRILKIDSTKVGKG 319
Query: 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409
E FSAEEPLKCP+D+LI+GV VGKHDGE+TELSMCQW+TTRLASAS DGTVKIW+DRK
Sbjct: 320 EVFSAEEPLKCPIDKLIDGVXFVGKHDGEVTELSMCQWMTTRLASASTDGTVKIWEDRKL 379
Query: 410 TPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468
PLAVLRP+DG PVN VTFL PH P HI+LIT GPLNRE+K+WASA +EGWLLPSDIES
Sbjct: 380 VPLAVLRPHDGQPVNSVTFLTAPHRPDHIILITAGPLNREVKLWASASDEGWLLPSDIES 439
Query: 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRM 528
W+CTQTL+L+SSAE R EDAFFNQVVAL RAGLFLLANAKKNA+YA+H++YGP PA+TR+
Sbjct: 440 WQCTQTLDLRSSAESRAEDAFFNQVVALPRAGLFLLANAKKNAMYAVHIEYGPYPAATRL 499
Query: 529 DYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAEL 588
DYIAEFTVTMPILSLTGT+ D+ PDGEH+VQ+YCVQT AIQQYALDLSQCLPPPLEN EL
Sbjct: 500 DYIAEFTVTMPILSLTGTS-DSLPDGEHVVQVYCVQTHAIQQYALDLSQCLPPPLENLEL 558
Query: 589 EKTDSNATRAFDVANPDGSASLESSHGTKSAD--VGTTSLVPPILSSSTESVPIASRPEG 646
EKTDS+ + F+ AN +LE SHG+K + VG + +P ILSSS+E+ PIAS P
Sbjct: 559 EKTDSSTSCGFNAANSAACDTLELSHGSKHIEMSVGGATPLPSILSSSSENGPIASHPVN 618
Query: 647 LPSSEVSSLSENA-SGAETKPSALPSGNA-ENIHSASPPLPLSPRLSRKSSGYRSPSNGF 704
L SSEV+SL E A SG E+K SALPS + ENIH+ASPPLPLSPRLS K SG+RSPSN F
Sbjct: 619 LASSEVTSLRETATSGMESKSSALPSSISSENIHAASPPLPLSPRLSGKLSGFRSPSNSF 678
Query: 705 EPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVPDPP 764
+PS + HG +Q + DYS+DRR +T +E AD P SG+NL K ++N AQNDISMVP+PP
Sbjct: 679 DPSPPLSNHGGDQPILDYSIDRRMDTVRENFADAPPSGENLRKDEKNIAQNDISMVPNPP 738
Query: 765 VVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGE 824
++FKHPTHL+TPSEILS +SSE+SQ +Q MNVGEAK+ D VVNND E +E+EVKVVGE
Sbjct: 739 IMFKHPTHLITPSEILS---ASSESSQITQGMNVGEAKIHDMVVNNDPESIELEVKVVGE 795
Query: 825 TG--GL--KNEFNS-RESHATVTEKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASD 879
TG G+ +E RESH V EKKEKSF SQASDL IQM RDCC+ TY ++G RQ SD
Sbjct: 796 TGIPGISKNDELECQRESHVIVAEKKEKSFCSQASDLSIQMTRDCCVETYTIEGARQVSD 855
Query: 880 VE---AQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISG 936
A D N + + QD ++D AK+G S M++ QS P+ KG+KQKGKNSQ+SG
Sbjct: 856 ANVTAAVDLSPNTADEDVQDSTRDVSAKMGESTTPMIVPQSSIPS-KGKKQKGKNSQVSG 914
Query: 937 TSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVS 996
SSPSPSP+NS DSSNEP+ S PS DA SQL +MQ+ML+Q+++ QKE+QKQMN +V+
Sbjct: 915 PSSPSPSPFNSTDSSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVNMQKEMQKQMNVMVA 974
Query: 997 APVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTIN 1056
PV KE +RLEASLGRS+EKVVKANSDALWARFQEEN KHEKL+RDRMQQ+TNLITN IN
Sbjct: 975 VPVTKESRRLEASLGRSMEKVVKANSDALWARFQEENTKHEKLDRDRMQQLTNLITNCIN 1034
Query: 1057 KDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSS 1116
KDLP++LEKT+KKEIAAVGPAVARAI+P +EK+ISSAI ESFQKG+G+K V+QLEK V+S
Sbjct: 1035 KDLPSMLEKTIKKEIAAVGPAVARAITPVIEKTISSAISESFQKGLGDKVVNQLEKLVNS 1094
Query: 1117 KLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKH 1176
KLE+ +ARQIQ QFQTSGKQALQDALRS LE ++IPAFE++CK MF+Q+DSTFQKGLIKH
Sbjct: 1095 KLESAMARQIQVQFQTSGKQALQDALRSTLEAAVIPAFEIACKTMFDQVDSTFQKGLIKH 1154
Query: 1177 TTAIQQQFETAHSPMAIALR-------------------------------DAINSATSI 1205
T+ +QQQFE+ HS +A+ALR DAINSA+SI
Sbjct: 1155 TSGVQQQFESTHSILAVALRSRLNVIVSTAVLLRMLHRINNGNSICIIATQDAINSASSI 1214
Query: 1206 TQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRL 1265
T+TLSGELADGQR++LA+AAAGAN+K LVTQ SNGPLAGLHEM EAPLDPTKELSRL
Sbjct: 1215 TKTLSGELADGQRQILAIAAAGANSKAVNPLVTQLSNGPLAGLHEMAEAPLDPTKELSRL 1274
Query: 1266 IAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISK 1325
I+ERK+EEAFTGALHRSDVSIVSWLCS VDL GILS VPLPLSQGVLLALLQQLACDISK
Sbjct: 1275 ISERKFEEAFTGALHRSDVSIVSWLCSLVDLQGILSLVPLPLSQGVLLALLQQLACDISK 1334
Query: 1326 ETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMH 1385
ETPRKLAWMTDVAVAINP DPMI++HVRPIFEQVYQILGHQRN P+TSA+EA+SIRLLMH
Sbjct: 1335 ETPRKLAWMTDVAVAINPGDPMIALHVRPIFEQVYQILGHQRNQPTTSAAEASSIRLLMH 1394
Query: 1386 VINSVLMSCK 1395
V+NSVL+SCK
Sbjct: 1395 VVNSVLLSCK 1404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089507|ref|XP_002308738.1| predicted protein [Populus trichocarpa] gi|222854714|gb|EEE92261.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1777 bits (4602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1427 (67%), Positives = 1109/1427 (77%), Gaps = 62/1427 (4%)
Query: 22 FDMNKLLKPSS-NPMNMIP------------NSTNLTTS--PSFPSPSSVSSPSPYLTPS 66
FDMNKLLKPSS NPM+++ NS +TT + PS SS PYLTPS
Sbjct: 23 FDMNKLLKPSSANPMSIMQPPNQQQQQGPSPNSNTITTENLTTSPSFPLPSSSPPYLTPS 82
Query: 67 SSYPPPTGPYPPYHY--YPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNP 124
SSYPPPTGPY P+H+ Y SP PP FQQ Q I + Q PQP S P
Sbjct: 83 SSYPPPTGPYHPFHHPHYLSPYPPPPPPFQQLHNQFLTNTNI-HHQNRPQPISSFAPPP- 140
Query: 125 NSTSSSSSGNNLLMAFFANQHQHQPP-SPTL--PPPSDSTVVIPSA-------------- 167
S S+SG +LM NQ+Q QPP S L P PS ++ + +A
Sbjct: 141 -PLSPSNSGGAVLMDILTNQNQQQPPLSSNLSGPFPSYASSAVSTATSAPPVPSAPPVSL 199
Query: 168 ---------PPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGL 218
PPVR+ S+K+PKGRHL GNH VYDIDVRL GEVQPQLEVTPITKY+SDPGL
Sbjct: 200 ASPTQQCCPPPVRMLSTKLPKGRHLNGNHVVYDIDVRLQGEVQPQLEVTPITKYVSDPGL 259
Query: 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV 278
VLGRQIAVNRNYICYGLK G IRILNI TALRSLLRGH Q+VTDMAFFAEDVHLLASA V
Sbjct: 260 VLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGHNQKVTDMAFFAEDVHLLASACV 319
Query: 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338
DG FI I EGPDEE+KPQI +I++A+ I+ADG+ VHPRVCWHPHKQEIL++AIGN I
Sbjct: 320 DGCVFIRKINEGPDEEEKPQIFERILLALHIIADGELVHPRVCWHPHKQEILVVAIGNLI 379
Query: 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD 398
LKID+N+VGKG FSAE PL CPVD+LI GVQLVGKHDGE+ ELSMCQW+TTRLASAS D
Sbjct: 380 LKIDTNKVGKGAGFSAELPLACPVDKLIEGVQLVGKHDGEVIELSMCQWMTTRLASASTD 439
Query: 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASAEE 457
G VKIW+D K+ PLAV RP+DG+PVN V FL P HP HIVLITGGPLN+ELKIWASA E
Sbjct: 440 GVVKIWEDCKAVPLAVFRPHDGNPVNSVAFLTAPDHPDHIVLITGGPLNQELKIWASASE 499
Query: 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517
EGWLLPS+ ESW+C QTL LKSS E EDAFF+QVVAL AGLFLLANAKKNAIYA+H+
Sbjct: 500 EGWLLPSNAESWQCNQTLTLKSSVESNAEDAFFDQVVALPCAGLFLLANAKKNAIYAVHL 559
Query: 518 DYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQ 577
+YGP PA+TRMDYIAEFTVTMPILSLTGT+ D+ P+GEHIVQ+YCVQTQAIQQYAL+LSQ
Sbjct: 560 EYGPYPAATRMDYIAEFTVTMPILSLTGTS-DSLPNGEHIVQVYCVQTQAIQQYALNLSQ 618
Query: 578 CLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSA--DVGTTSLVPPILSSST 635
CLPPPLEN ELE+T+SN + AFD +N DGS +ESSHG+K G + +PP+ S+S+
Sbjct: 619 CLPPPLENMELERTESNVSHAFDASNSDGSTIMESSHGSKPTYMSAGNIASIPPMTSNSS 678
Query: 636 ESVPIASRPEGLPSSEV-SSLSENASGAETKPSALPSGNAENIHSASPPLPLSPRLSRKS 694
E+ P A+ PE L SS+V SSL +SG +TK +A NA+N ++ P LP+SPRL RK
Sbjct: 679 ENAPAANHPESLCSSDVNSSLDIASSGGQTKATA-SHNNADNTNTVPPLLPMSPRLPRKL 737
Query: 695 SGYRSPSNGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQ 754
SG +S SN + S Q ++H +Q+V DY VDRR T KE +D SSGDNL KG++N Q
Sbjct: 738 SGLQSLSNSTDTSLQLSDHAGDQSVPDYLVDRRIETVKENASDT-SSGDNLSKGEKNVKQ 796
Query: 755 NDISMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEG 814
DI+MV + P++FKHPTHL+TPSEILS A SS ENSQ +Q +NV EAK+QD +VNND E
Sbjct: 797 TDIAMVSETPIMFKHPTHLITPSEILSRAVSS-ENSQTTQGLNVTEAKIQDVLVNNDIES 855
Query: 815 VEVEVKVVGETG-GLKNEFN-SRESHATVTEKKEKSFYSQASDLGIQMARDCCMGTYNVD 872
EVE+KVVGETG N+F+ RESH V EKKEKSFYSQASDLGIQMARDCC+ Y+V
Sbjct: 856 AEVELKVVGETGTDQNNDFDLPRESHTAVAEKKEKSFYSQASDLGIQMARDCCVEAYSVG 915
Query: 873 GIRQASD---VEAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKG 929
++Q + E DRP ++ E E+QDM+KD PAK E S+ + Q P+P K +K KG
Sbjct: 916 PVQQVDEGSITEVLDRPPSD-EDEKQDMTKDVPAKRDEPETSVEVPQPPAPTTKAKKPKG 974
Query: 930 KNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQK 989
K+SQ+S SSPSPSP+NS DSS EP C A S+DA + Q+L MQD L+Q+M+ QKE+QK
Sbjct: 975 KSSQVSVQSSPSPSPFNSTDSSKEPGCSPCAQSSDAALPQILDMQDTLDQLMNMQKEMQK 1034
Query: 990 QMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITN 1049
QMN+++S PV+KEGKRLEASLGRSIEKVV+AN+DALW RFQEEN K EKLERDR+QQ+ N
Sbjct: 1035 QMNTMISVPVSKEGKRLEASLGRSIEKVVRANTDALWVRFQEENTKLEKLERDRIQQLAN 1094
Query: 1050 LITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQ 1109
LITN INKDLP LEKTLKKEIAA+GPAVARAI+P LEKSISSAI ESFQKGVGEKAV+Q
Sbjct: 1095 LITNFINKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISSAITESFQKGVGEKAVNQ 1154
Query: 1110 LEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTF 1169
LEK+VSSKLE TVARQIQ+QFQTSGKQALQDALRS LE SIIPAFEMSCKAMF+Q+D+TF
Sbjct: 1155 LEKTVSSKLEVTVARQIQSQFQTSGKQALQDALRSTLEASIIPAFEMSCKAMFDQVDATF 1214
Query: 1170 QKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAGAN 1229
QK L KH QQQF + HSP+AIALRDAINSA+S+TQTLSGELADGQR+LLAMAAAGAN
Sbjct: 1215 QKELSKHINDTQQQFNSMHSPLAIALRDAINSASSLTQTLSGELADGQRQLLAMAAAGAN 1274
Query: 1230 TKTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSW 1289
++ G + NGPL GLHEM EAPLDPTKELSRLIAERKYEEAFT ALHR+DV+IVSW
Sbjct: 1275 SEVGNP-SAKLGNGPLPGLHEMPEAPLDPTKELSRLIAERKYEEAFTVALHRNDVTIVSW 1333
Query: 1290 LCSQVDLPGILSTVPL-PLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMI 1348
LCSQVDL GILS PL PLSQGVLLALLQQLACDIS ET RKL WMTDVA AINP DPMI
Sbjct: 1334 LCSQVDLQGILSMSPLPPLSQGVLLALLQQLACDISNETSRKLGWMTDVAAAINPVDPMI 1393
Query: 1349 SMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
++HVRPIFEQVYQI+ +QR+LPSTSASEA IRLL+ VINSVL SCK
Sbjct: 1394 AVHVRPIFEQVYQIVINQRSLPSTSASEAPGIRLLLVVINSVLRSCK 1440
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124754|ref|XP_002329940.1| predicted protein [Populus trichocarpa] gi|222871962|gb|EEF09093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1696 bits (4391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 945/1416 (66%), Positives = 1098/1416 (77%), Gaps = 64/1416 (4%)
Query: 22 FDMNKLLKPSS-NPMNMIPN----------------STNLTTSPSFPSPSSVSSPSP--- 61
FD+NKL KPSS NPMNM+ ++N TTS + + S PS
Sbjct: 24 FDLNKLFKPSSSNPMNMMQPHIQQQQQQQQGPPPSPNSNTTTSGNLTTSPSFPLPSSSPP 83
Query: 62 YLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHN 121
YLTPSSSYPP P P H P P S
Sbjct: 84 YLTPSSSYPP-------------PTGPYHPFHHPHYLSPYPPPPPPQQLHNQPQPISSFA 130
Query: 122 PNPNSTSSSSSGNNLLMAFFANQHQHQPPSPT-----LPPPSDSTVVIPSAPPVRLRSSK 176
P+P S ++SG +LM NQ+Q QPP T P + ST I ++PPV
Sbjct: 131 PSPPPLSPNNSGGAVLMDILTNQNQQQPPQSTNLSGPFPSSTPSTAFITTSPPVPSAPPL 190
Query: 177 VPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK 236
KGRHL GNH VYDIDVRL GEVQPQLEVTPITKY+SDPGLVLGRQIAVNRNYICYGLK
Sbjct: 191 P-KGRHLNGNHVVYDIDVRLQGEVQPQLEVTPITKYLSDPGLVLGRQIAVNRNYICYGLK 249
Query: 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296
G IRILNI TALRSLLRGH Q+VTDMAFFAEDVHLLASA VDGR FI I EG DEE+K
Sbjct: 250 PGAIRILNINTALRSLLRGHNQKVTDMAFFAEDVHLLASACVDGRVFIRKINEGSDEEEK 309
Query: 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356
PQI +I++A+ I+ADG+S HPRVCWHPHKQEIL++AIGN ILKID+ ++GKG FS E+
Sbjct: 310 PQIFERILLALHIIADGESFHPRVCWHPHKQEILIVAIGNLILKIDTIKIGKGGAFSVEQ 369
Query: 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416
PL CP+D+LI+GVQLVGKHDGE+TELSMCQW+TTRLASAS DG VKIW+DRK+ PLAV R
Sbjct: 370 PLTCPIDKLIDGVQLVGKHDGEVTELSMCQWMTTRLASASTDGVVKIWEDRKAVPLAVFR 429
Query: 417 PYDGHPVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475
P+DG+PVN V FL P P HIVLITGGPLN+E+KIWASA EEGWLLPSD ESW+CTQTL
Sbjct: 430 PHDGNPVNSVAFLTAPDRPDHIVLITGGPLNQEVKIWASASEEGWLLPSDAESWQCTQTL 489
Query: 476 ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535
LKSSAE EDAFFNQVVAL RA LFLLANAKKNAIYA+H++YGP PA+T+MDYIAEFT
Sbjct: 490 TLKSSAESSAEDAFFNQVVALPRASLFLLANAKKNAIYAVHLEYGPYPAATQMDYIAEFT 549
Query: 536 VTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNA 595
VTMPILSLTGT+ D P+GE+IVQ+YCVQTQAIQQYAL+LSQCLPPPLEN LEKT+SN
Sbjct: 550 VTMPILSLTGTS-DCLPNGENIVQVYCVQTQAIQQYALNLSQCLPPPLENMVLEKTESNV 608
Query: 596 TRAFDVANPDGSASLESSHGTKSADVGTTSL--VPPILSSSTESVPIASRPEGLPSSEV- 652
+RAFD AN DGSA +ESSHG+K ++ T ++ +PP+ SS+ES P+A E L SS+V
Sbjct: 609 SRAFDTANSDGSAIMESSHGSKPIEISTGNMTSIPPMTPSSSESAPVAR--ESLGSSDVG 666
Query: 653 SSLSENASGAETKPSALPS-GNAENIHSASPPLPLSPRLSRKSSGYRSPSNGFEPSAQPN 711
SSL +SG +TK + S N +N ++ SP L LSP+LSR SG +SP+N +P+ Q +
Sbjct: 667 SSLDIASSGGQTKAITISSRNNTDNTNTVSPHLLLSPKLSRSLSGLQSPANITDPNVQLS 726
Query: 712 EHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVPDPPVVFKHPT 771
H +Q V+D+SVDRR T KE + D S+GDNL KG++N Q I+MV +PPV+FKHPT
Sbjct: 727 GHAGDQPVSDHSVDRRIETVKENVTDT-STGDNLNKGEKNIEQTGIAMVSEPPVMFKHPT 785
Query: 772 HLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGL--- 828
HL+TPSEILS A+S ENSQ +Q +NVGEAK+QD +VNND E VEVEVKVV ET G
Sbjct: 786 HLITPSEILSRGAAS-ENSQTTQGLNVGEAKIQDVLVNNDTENVEVEVKVVEETPGKSGA 844
Query: 829 --KNEFN-SRESHATVTEKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASD---VEA 882
N+F+ ESH V EKKEK FYSQASDLGIQMARDC + Y+V IRQA++ E
Sbjct: 845 NQNNDFDLPIESHTPVAEKKEKPFYSQASDLGIQMARDCHVEAYSVGAIRQANEGSITEV 904
Query: 883 QDR-PSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPA--AKGRKQKGKNSQISGTSS 939
DR PS G EEQ +++D AK G +E S+ +LQSP+PA KG+KQKGK+SQ+S SS
Sbjct: 905 LDRNPS--GVDEEQHITEDVRAKSGEAETSVAVLQSPAPAPATKGKKQKGKSSQVSVPSS 962
Query: 940 PSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPV 999
PSPSP+NS SSNEP C SGA S+DA + Q+LA+QD L+Q+++ QKE+QKQMN+++S PV
Sbjct: 963 PSPSPFNSTGSSNEPGCTSGAQSSDAALPQILALQDTLDQLLNMQKEMQKQMNTMISVPV 1022
Query: 1000 NKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTINKDL 1059
+KEGKRLEASLGRSIEK+++AN+DALWARFQEEN KHEKLE+DR+QQ+TNLITN INKDL
Sbjct: 1023 SKEGKRLEASLGRSIEKIIRANTDALWARFQEENTKHEKLEKDRIQQLTNLITNCINKDL 1082
Query: 1060 PAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLE 1119
P LEKTLKKEIAA+GPAVARAI+P LEKSISSAI ESFQKGVGEKAV+QLEK+VSSKLE
Sbjct: 1083 PTALEKTLKKEIAAIGPAVARAITPILEKSISSAITESFQKGVGEKAVNQLEKTVSSKLE 1142
Query: 1120 TTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTA 1179
TVARQIQ+QFQTSGKQALQDALRS LE SIIPAFEMSCKAMF+Q+D+TFQ GL KH
Sbjct: 1143 ATVARQIQSQFQTSGKQALQDALRSTLEASIIPAFEMSCKAMFDQVDATFQNGLNKHIND 1202
Query: 1180 IQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQ 1239
IQQQF + HSP+AIALRDAINSA+S+TQTLSGELADGQR+LLAMAAAGAN+K G T+
Sbjct: 1203 IQQQFNSMHSPVAIALRDAINSASSLTQTLSGELADGQRQLLAMAAAGANSKVGDP-STK 1261
Query: 1240 SSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGI 1299
NGPL G+HEM E PLDPTKELSRLIAE+KYEEAFT ALHRSDVSIVSWLCSQVDL GI
Sbjct: 1262 LGNGPLPGMHEMPEVPLDPTKELSRLIAEQKYEEAFTLALHRSDVSIVSWLCSQVDLQGI 1321
Query: 1300 LSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMISMHVRPIFEQV 1359
LS PLPLSQGVLLALLQQLACD S ET RKLAWMTDVA AINP DPMI+MHV PIF+QV
Sbjct: 1322 LSISPLPLSQGVLLALLQQLACDFSNETSRKLAWMTDVAAAINPTDPMIAMHVGPIFDQV 1381
Query: 1360 YQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
YQI+ HQR+LPSTSASEA+ IR+L+ VINSVL SCK
Sbjct: 1382 YQIVVHQRSLPSTSASEASGIRVLLVVINSVLRSCK 1417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296080849|emb|CBI18779.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1681 bits (4353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 864/1253 (68%), Positives = 993/1253 (79%), Gaps = 106/1253 (8%)
Query: 149 PPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTP 208
PP ++P + +V P PP+RL S+K PKGRHLIG+ VYD+DVRL GEVQPQLEVTP
Sbjct: 19 PPEFSMPTTTPINLVTPQPPPLRLLSNKFPKGRHLIGDRVVYDVDVRLQGEVQPQLEVTP 78
Query: 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE 268
ITKY+SDPGLV+GRQIAVNR YICYGLKLGNIR+LNI TALR+LLRGHTQRVTDMAFFAE
Sbjct: 79 ITKYVSDPGLVVGRQIAVNRTYICYGLKLGNIRVLNINTALRALLRGHTQRVTDMAFFAE 138
Query: 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328
DV LLASAS+DG FIW I EGP+E+DK I GKIV+AIQI+ G SVHPRVCWH HKQE
Sbjct: 139 DVPLLASASIDGLVFIWRINEGPNEDDKAHITGKIVIAIQIVGGGTSVHPRVCWHSHKQE 198
Query: 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388
IL++AIGNRILKIDS +VGKGE FSAEEPLKCP+D+LI+GVQ VGKHDGE+TELSMCQW+
Sbjct: 199 ILVVAIGNRILKIDSTKVGKGEVFSAEEPLKCPIDKLIDGVQFVGKHDGEVTELSMCQWM 258
Query: 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNR 447
TTRLASAS DGTVKIW+DRK PLAVLRP+DG PVN VTFL PH P HI+LIT GPLNR
Sbjct: 259 TTRLASASTDGTVKIWEDRKLVPLAVLRPHDGQPVNSVTFLTAPHRPDHIILITAGPLNR 318
Query: 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507
E+K+WASA +EGWLLPSDIESW+CTQTL+L+SSAE R EDAFFNQVVAL RAGLFLLANA
Sbjct: 319 EVKLWASASDEGWLLPSDIESWQCTQTLDLRSSAESRAEDAFFNQVVALPRAGLFLLANA 378
Query: 508 KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQA 567
KKNA+YA+H++YGP PA+TR+DYIAEFTVTMPILSLTGT+ D+ PDGEH+VQ+YCVQT A
Sbjct: 379 KKNAMYAVHIEYGPYPAATRLDYIAEFTVTMPILSLTGTS-DSLPDGEHVVQVYCVQTHA 437
Query: 568 IQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLV 627
IQQYALDLSQCLPPPLEN ELEKTDS
Sbjct: 438 IQQYALDLSQCLPPPLENLELEKTDS---------------------------------- 463
Query: 628 PPILSSSTESVPIASRPEGLPSSEVSSLSENA-SGAETKPSALPSGNA-ENIHSASPPLP 685
S AS P L SSEV+SL E A SG E+K SALPS + ENIH+ASPPLP
Sbjct: 464 ---------STSCASHPVNLASSEVTSLRETATSGMESKSSALPSSISSENIHAASPPLP 514
Query: 686 LSPRLSRKSSGYRSPSNGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNL 745
LSPRLS K SG+RSPSN F+PS + HG +Q + DYS+DRR +T +E AD P SG+NL
Sbjct: 515 LSPRLSGKLSGFRSPSNSFDPSPPLSNHGGDQPILDYSIDRRMDTVRENFADAPPSGENL 574
Query: 746 WKGDRNSAQNDISMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQD 805
K ++N AQNDISM AK+ D
Sbjct: 575 RKDEKNIAQNDISM-----------------------------------------AKIHD 593
Query: 806 AVVNNDAEGVEVEVKVVGETGGLKNEFNSRESHATVTEKKEKSFYSQASDLGIQMARDCC 865
VVNND E +E+E + RESH V EKKEKSF SQASDL IQM RDCC
Sbjct: 594 MVVNNDPESIELECQ--------------RESHVIVAEKKEKSFCSQASDLSIQMTRDCC 639
Query: 866 MGTYNVDGIRQASDVE---AQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAA 922
+ TY ++G RQ SD A D N + + QD ++D AK+G S M++ QS P+
Sbjct: 640 VETYTIEGARQVSDANVTAAVDLSPNTADEDVQDSTRDVSAKMGESTTPMIVPQSSIPS- 698
Query: 923 KGRKQKGKNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMS 982
KG+KQKGKNSQ+SG SSPSPSP+NS DSSNEP+ S PS DA SQL +MQ+ML+Q+++
Sbjct: 699 KGKKQKGKNSQVSGPSSPSPSPFNSTDSSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVN 758
Query: 983 TQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERD 1042
QKE+QKQMN +V+ PV KE +RLEASLGRS+EKVVKANSDALWARFQEEN KHEKL+RD
Sbjct: 759 MQKEMQKQMNVMVAVPVTKESRRLEASLGRSMEKVVKANSDALWARFQEENTKHEKLDRD 818
Query: 1043 RMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGV 1102
RMQQ+TNLITN INKDLP++LEKT+KKEIAAVGPAVARAI+P +EK+ISSAI ESFQKG+
Sbjct: 819 RMQQLTNLITNCINKDLPSMLEKTIKKEIAAVGPAVARAITPVIEKTISSAISESFQKGL 878
Query: 1103 GEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMF 1162
G+K V+QLEK V+SKLE+ +ARQIQ QFQTSGKQALQDALRS LE ++IPAFE++CK MF
Sbjct: 879 GDKVVNQLEKLVNSKLESAMARQIQIQFQTSGKQALQDALRSTLEAAVIPAFEIACKTMF 938
Query: 1163 EQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLA 1222
+Q+DSTFQKGLIKHT+ +QQQFE+ HS +A+ALRDAINSA+SIT+TLSGELADGQR++LA
Sbjct: 939 DQVDSTFQKGLIKHTSGVQQQFESTHSTLAVALRDAINSASSITKTLSGELADGQRQILA 998
Query: 1223 MAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRS 1282
+AAAGAN+K LVTQ SNGPLAGLHEM EAPLDPTKELSRLI+ERK+EEAFTGALHRS
Sbjct: 999 IAAAGANSKAVNPLVTQLSNGPLAGLHEMAEAPLDPTKELSRLISERKFEEAFTGALHRS 1058
Query: 1283 DVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAIN 1342
DVSIVSWLCS VDL GILS VPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAIN
Sbjct: 1059 DVSIVSWLCSLVDLQGILSLVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAIN 1118
Query: 1343 PADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
PADPMI++HVRPIFEQVYQILGHQRNLP+TSA+EA+SIRLLMHV+NSVL+SCK
Sbjct: 1119 PADPMIALHVRPIFEQVYQILGHQRNLPTTSAAEASSIRLLMHVVNSVLLSCK 1171
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558011|ref|XP_003547303.1| PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1634 bits (4231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1263 (66%), Positives = 993/1263 (78%), Gaps = 54/1263 (4%)
Query: 149 PPSPTLPP---PSDSTVVI--PSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQ 203
PP+P+ P PS S V + P + P R+ S+K+PKGRHLIG H+VYDIDVR+ GEVQPQ
Sbjct: 181 PPNPSGLPSTQPSGSPVNLASPQSTPTRMLSTKMPKGRHLIGEHAVYDIDVRVPGEVQPQ 240
Query: 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDM 263
LEVTPITKY SDPGLVLGRQIAVN++YICYGLKLG IR+LNI TALR LLRGHTQRVTDM
Sbjct: 241 LEVTPITKYASDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINTALRYLLRGHTQRVTDM 300
Query: 264 AFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWH 323
AFFAED+HLLASAS DGR FIW I EGPDE+DKPQI GK+++A+QIL + +SVHPRVCWH
Sbjct: 301 AFFAEDLHLLASASTDGRIFIWKIKEGPDEDDKPQITGKVILALQILGESESVHPRVCWH 360
Query: 324 PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383
PHKQEILM+AIGNRILKIDS R GKGE FSAEEPLKC +D+LI+GVQLVGKHDG +TELS
Sbjct: 361 PHKQEILMVAIGNRILKIDSMRAGKGETFSAEEPLKCSIDKLIDGVQLVGKHDGNVTELS 420
Query: 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITG 442
MCQW+ +RLASAS DGTVKIW++RK+TPLAV+RP+DG PVN VTFL PH P+HIVLIT
Sbjct: 421 MCQWMKSRLASASADGTVKIWEERKATPLAVIRPHDGKPVNSVTFLTAPHRPEHIVLITA 480
Query: 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502
GPLN+E+KIW S EEGWLLPSD ESW C QTL+++SS+E EDAFFNQVVAL+RAGL+
Sbjct: 481 GPLNQEVKIWVSDNEEGWLLPSDSESWNCIQTLDIRSSSEANPEDAFFNQVVALSRAGLY 540
Query: 503 LLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYC 562
LLANAKKN IYA+H++YG NP +TRMDYIAEFTVTMPILSLTGT+ D+ PDGEHIVQIYC
Sbjct: 541 LLANAKKNTIYAVHIEYGSNPTATRMDYIAEFTVTMPILSLTGTS-DSLPDGEHIVQIYC 599
Query: 563 VQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVG 622
VQTQAIQQY L+LSQCLPPPL+N E EKT+SN +RAFD DGS
Sbjct: 600 VQTQAIQQYGLNLSQCLPPPLDNVEHEKTESNLSRAFDAL--DGSME------------- 644
Query: 623 TTSLVPPILSSSTESVPIASRPEGLPSSEVSSLSENA--SGAETKPSALPSGNA-ENIHS 679
T +P +LS S+ES P+ S LPSS++S L E + S +ETK + LP N E+IH+
Sbjct: 645 -TGNMPQVLSGSSESAPVVSAAMNLPSSDISGLPEASISSDSETKSNDLPPRNGFEHIHT 703
Query: 680 ASPPLPLSPRLSRKSSGYRSPSNGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVP 739
A PPLP SPRLS+K SG ++ SN E S+ +H SEQ D S +RR + K+ MADVP
Sbjct: 704 APPPLPQSPRLSQKLSGLQNSSNNLETSSTSADHSSEQTNLDSSAERRVESEKD-MADVP 762
Query: 740 SSGDNLWKGDRNSAQNDISMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVG 799
SGDNL K D+ + + + +KHPTHLVTPSEI S A+ SS+ S SQ MNV
Sbjct: 763 GSGDNLRKDDKVVNNDVSVVS-NTSTTYKHPTHLVTPSEIFSNASLSSDTSHTSQGMNV- 820
Query: 800 EAKVQDAVVNNDAEGVEVEVKVVGETGGL--KNEF-NSRESHATVTEKKEKSFYSQASDL 856
QD + DAE EV+VKVVGE G + E+ R+ H V EKKEK FYSQASDL
Sbjct: 821 ----QDVAAHRDAENSEVDVKVVGERGSILENTEYERDRDLHTNVAEKKEKLFYSQASDL 876
Query: 857 GIQMARDCCMGTYNVDGIRQASDVEAQDRPSNNG---EVEEQDMSKDTPAKVGASEASMV 913
GIQMAR+ TYN++G RQA +++ D P +G E E QD KD PA + SE
Sbjct: 877 GIQMARE----TYNIEGARQADNIKTIDAPDQSGNSVEEEVQDTRKDLPANISESETVAA 932
Query: 914 ILQSPSPAAKGRKQKGKNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAM 973
+QSP+P+AKG++QKGKNS +SG SS SPSP+NS DSSN+ SG S + + QL AM
Sbjct: 933 AVQSPAPSAKGKRQKGKNSHVSGASSTSPSPFNSTDSSNDQGGNSGGSSMEPALPQLSAM 992
Query: 974 QDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEEN 1033
Q+M++Q++S KE+QKQMN++VSAPV KEGKRLE SLGR++EKVVKA++DALWAR QEEN
Sbjct: 993 QEMMSQLLSMHKEMQKQMNAMVSAPVTKEGKRLEGSLGRNMEKVVKAHTDALWARLQEEN 1052
Query: 1034 AKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSA 1093
AK EKLERDR QQITNLI+N +NKD+ +ILEK +KKEI+++G + R+IS +EK+ISSA
Sbjct: 1053 AKQEKLERDRTQQITNLISNYVNKDMVSILEKIIKKEISSIGTTITRSISQVIEKTISSA 1112
Query: 1094 IMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPA 1153
I ESFQKGVG+KA++QLEKSVSSKLE TVARQIQAQFQTSGKQALQ+AL++++E S++PA
Sbjct: 1113 ITESFQKGVGDKALNQLEKSVSSKLEATVARQIQAQFQTSGKQALQEALKTSVEASVVPA 1172
Query: 1154 FEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGEL 1213
FEMSCKAMFEQID FQ GL KHTTAIQQQF++ HSP+A+ LRD INSA+SITQTLSG+L
Sbjct: 1173 FEMSCKAMFEQIDVAFQNGLGKHTTAIQQQFDSTHSPLAMTLRDTINSASSITQTLSGQL 1232
Query: 1214 ADGQRKLLAMAAAGANTKTGTS-LVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYE 1272
ADGQRKLLA+A N+K V Q +N GLHEM E DPTKELSRLI+E K+E
Sbjct: 1233 ADGQRKLLAIA---TNSKVAADPFVAQINN----GLHEMTE---DPTKELSRLISEGKFE 1282
Query: 1273 EAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLA 1332
EAFTGALHRSDVSIVSWLCSQVDL GIL+ VPLPLSQGVLL+LLQQL+CDI+ ETP+KLA
Sbjct: 1283 EAFTGALHRSDVSIVSWLCSQVDLTGILAMVPLPLSQGVLLSLLQQLSCDINTETPKKLA 1342
Query: 1333 WMTDVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLM 1392
WMTDVA AINPADP I+ HV+ I +QV + LGH R LP+TS SEA++IRLLMHVINSVL+
Sbjct: 1343 WMTDVAAAINPADPRIAAHVQRILDQVSRTLGHYRTLPTTSPSEASTIRLLMHVINSVLL 1402
Query: 1393 SCK 1395
SCK
Sbjct: 1403 SCK 1405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532380|ref|XP_003534751.1| PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1620 bits (4195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1260 (65%), Positives = 986/1260 (78%), Gaps = 51/1260 (4%)
Query: 149 PPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTP 208
P S P S + P + P R+ S+K+PKGRHLIG H+VYDID R+ GEVQPQLEVTP
Sbjct: 186 PASTQQPSGSPVNLASPQSTPTRMLSTKLPKGRHLIGEHAVYDIDARVPGEVQPQLEVTP 245
Query: 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE 268
ITKY SDPGLVLGRQIAVN++YICYGLKLG IR+LNI TALR LLRGHTQRVTDMAFFAE
Sbjct: 246 ITKYASDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINTALRYLLRGHTQRVTDMAFFAE 305
Query: 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328
D+HLLASAS DGR F+W I EGPDE+DKPQI GK+++A+QIL + +SVHPRVCWHPHKQE
Sbjct: 306 DLHLLASASTDGRIFVWKINEGPDEDDKPQITGKVILALQILGESESVHPRVCWHPHKQE 365
Query: 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388
ILM+AIGNRILKIDS R GKG+ FSAEEPLKC +D+LI+GVQLVGKHDG +TELSMCQW+
Sbjct: 366 ILMVAIGNRILKIDSMRAGKGKFFSAEEPLKCSIDKLIDGVQLVGKHDGNVTELSMCQWM 425
Query: 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNR 447
+RLASAS DGTVKIW++RK+TPLAV+RP+DG PVN VTFL PH P+HIVLIT GPLN+
Sbjct: 426 KSRLASASADGTVKIWEERKATPLAVIRPHDGKPVNSVTFLTAPHRPEHIVLITAGPLNQ 485
Query: 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507
E+KIW S EEGWLLPSD ESW C QTL+++SS E EDAFFNQVVAL+RAGL+LLANA
Sbjct: 486 EVKIWVSDNEEGWLLPSDSESWNCIQTLDIRSSFEANPEDAFFNQVVALSRAGLYLLANA 545
Query: 508 KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQA 567
KKN IYA+H++YG NP +TRMDYIAEFTVTMPILSLTGT+ D+ PDGEHIVQIYCVQTQA
Sbjct: 546 KKNTIYAVHIEYGSNPTATRMDYIAEFTVTMPILSLTGTS-DSLPDGEHIVQIYCVQTQA 604
Query: 568 IQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLV 627
IQQY L+LSQCLPPPL+N ELEKT+S+ +RAFD DGS T +
Sbjct: 605 IQQYGLNLSQCLPPPLDNVELEKTESHLSRAFDAL--DGSME--------------TGNM 648
Query: 628 PPILSSSTESVPIASRPEGLPSSEVSSLSE----NASGAETKPSALPSGNA-ENIHSASP 682
P +L S+ES P+ S LPSS++S L E + S +ETK + LP N E +HSASP
Sbjct: 649 PQVLCGSSESAPVVSVAVNLPSSDISGLPEASISSISDSETKSNDLPPRNGFELVHSASP 708
Query: 683 PLPLSPRLSRKSSGYRSPSNGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSG 742
PLP SPRLS K SG ++ SN E S+ +H SEQ D S +++ SK+ MADVP SG
Sbjct: 709 PLPQSPRLSPKLSGLKNSSNNLETSSTSADHSSEQTNLDSSAEQKVE-SKKDMADVPGSG 767
Query: 743 DNLWKGDRNSAQNDISMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAK 802
DNL K D+ + + + P +KHPTHLVTPSEI S AA SS+NS SQ MN
Sbjct: 768 DNLRKDDKVVQSDVSVVS-NAPTTYKHPTHLVTPSEIFSNAALSSDNSHNSQGMNG---- 822
Query: 803 VQDAVVNNDAEGVEVEVKVVGETGGLK--NEF-NSRESHATVTEKKEKSFYSQASDLGIQ 859
QD + DAE +V+V+VVGET ++ E+ R+SH V EKKEK FYSQASDLGIQ
Sbjct: 823 -QDVAAHRDAENSQVDVEVVGETDSIQENTEYERDRDSHTNVAEKKEKLFYSQASDLGIQ 881
Query: 860 MARDCCMGTYNVDGIRQASDVE---AQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQ 916
MAR+ TYN++G QA +++ A D+ N+ E E QD SKD PA + SE +Q
Sbjct: 882 MARE----TYNIEGACQADNIKTINAPDQSGNSVEEEIQDTSKDVPANISESETVAAAVQ 937
Query: 917 SPSPAAKGRKQKGKNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDM 976
SP+P+ KG++QKGKNS +SG SS SPSP+NS DSSN+ SG S +A + QL AMQ+M
Sbjct: 938 SPAPSVKGKRQKGKNSHVSGASSTSPSPFNSTDSSNDQGGNSGGSSMEAALPQLFAMQEM 997
Query: 977 LNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKH 1036
++Q++S KE+QKQMN++VS PV KEGKRLE SLGR++EKVVKA++DALWAR QEENAK
Sbjct: 998 MSQLLSMNKEMQKQMNAMVSVPVTKEGKRLEGSLGRNMEKVVKAHTDALWARLQEENAKQ 1057
Query: 1037 EKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIME 1096
EKLERDR QQITNLI+N +NKD+ +ILEK +KKEI+++G + R+IS +EK+ISSAI E
Sbjct: 1058 EKLERDRTQQITNLISNYVNKDMVSILEKIIKKEISSIGTTITRSISQVIEKTISSAITE 1117
Query: 1097 SFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEM 1156
SFQKGVG+KA++QLEKSVSSKLE TVARQIQAQFQTSGKQALQ+AL++++E S++PAFEM
Sbjct: 1118 SFQKGVGDKALNQLEKSVSSKLEATVARQIQAQFQTSGKQALQEALKTSVEASVVPAFEM 1177
Query: 1157 SCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADG 1216
SCKA+FEQID FQ GL+KHTTAIQQQF++ HSP+A+ LRD INSA+SITQTLSG+LADG
Sbjct: 1178 SCKALFEQIDIKFQNGLVKHTTAIQQQFDSTHSPLAMTLRDTINSASSITQTLSGQLADG 1237
Query: 1217 QRKLLAMAAAGANTKTGTS-LVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAF 1275
QRKLLA+A N+K V Q +N GLHEM E DPTKELSRLI+E K+EEAF
Sbjct: 1238 QRKLLAIA---TNSKVAADPFVAQINN----GLHEMTE---DPTKELSRLISEGKFEEAF 1287
Query: 1276 TGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMT 1335
TGALHRSDVSIVSWLCSQVDL IL+ VPLPLSQGVLL+LLQQL+CDI+ ETP+KL WMT
Sbjct: 1288 TGALHRSDVSIVSWLCSQVDLARILAMVPLPLSQGVLLSLLQQLSCDINTETPKKLTWMT 1347
Query: 1336 DVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
DVA AINPADP I+ HVR I +QV + LGH R LP+TS SEA++IRLLMHVINSVL+SCK
Sbjct: 1348 DVAAAINPADPRIAAHVRQILDQVSRTLGHHRILPTTSPSEASTIRLLMHVINSVLLSCK 1407
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462062|ref|XP_002269575.1| PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1573 bits (4074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1425 (60%), Positives = 1056/1425 (74%), Gaps = 81/1425 (5%)
Query: 19 SGGFDMNKLLKPSS-NPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPP-TGPY 76
+ FDM+KL KP+S +P N PN+ N ++ S S S PP T P+
Sbjct: 10 AAAFDMHKLFKPTSPSPQN--PNNLNSSSPFPPSSYPPPPSASYPPPSGPYSYPPQTSPF 67
Query: 77 PPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSH----NPNPNSTSSSSS 132
H+Y P PQ QL Q+ + YP + QPP P H NPNP +
Sbjct: 68 HHQHHY-HIPYPQEQLSNMHHQRS-----VSYPTPLLQPP-PHHLAPPNPNPGAR----- 115
Query: 133 GNNLLMAFFA----NQHQHQPPS-------------------------PTLPPPSDSTVV 163
LMA + N Q P+ P+ PPP
Sbjct: 116 ----LMALLSPPTTNLDLTQQPAMPVAPIQQPASGVSEFAASPNVPILPSAPPPGIPNPA 171
Query: 164 IPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQ 223
+ +A PVR+ SSK+PKGR L+G + VYD+DVRL GEVQPQLEVTPITKY+SDPGLVLGRQ
Sbjct: 172 VVTASPVRMPSSKLPKGRRLVGENVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQ 231
Query: 224 IAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283
IAVN+ YICYGLKLG IR+LNI TALR LLRGH QRVTDMAFFAEDVHLLASAS++GR +
Sbjct: 232 IAVNKTYICYGLKLGAIRVLNINTALRYLLRGHAQRVTDMAFFAEDVHLLASASINGRVY 291
Query: 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343
+W I+EGPDEEDKPQI GKIV+AIQI+ +G+SV+PRVCWH HKQE+L++ IG RILKID+
Sbjct: 292 VWKISEGPDEEDKPQITGKIVIAIQIVGEGESVNPRVCWHCHKQEVLVVGIGKRILKIDT 351
Query: 344 NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403
+VGKGE +SA+EPL CPVD+LI+GVQ +GKHDGE+T+LSMCQW+TTRL SAS DGT+KI
Sbjct: 352 TKVGKGESYSADEPLNCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTRLVSASTDGTIKI 411
Query: 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLL 462
W+DRK+ PL VLRP+DGHPVN TFL PH P HI+LIT GPLNRE+K+WA+ EEGWLL
Sbjct: 412 WEDRKTLPLLVLRPHDGHPVNSATFLTAPHRPDHIILITAGPLNREVKLWATESEEGWLL 471
Query: 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522
PSD ESW CTQTL+LKSSAE +E+AFFNQV+AL+++GL LLANAKKNAIYA+H++YG N
Sbjct: 472 PSDAESWHCTQTLDLKSSAEPCVEEAFFNQVLALSKSGLLLLANAKKNAIYAVHLEYGSN 531
Query: 523 PASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPP 582
PA+T MDYIAEFTVTMPILS TGT+ GEH+VQ+YC QTQAIQQYAL+LSQCLP
Sbjct: 532 PAATCMDYIAEFTVTMPILSFTGTSELLH--GEHVVQVYCFQTQAIQQYALNLSQCLPLL 589
Query: 583 LENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTS--LVPPILSSSTESVPI 640
EN +EK+DS + DV N +G +LE G+K ++ TS L +L SS+ES P
Sbjct: 590 PENVGVEKSDSGVSH--DVTNAEGFGTLEPP-GSKLTEMPLTSSALKSTVLISSSESEPG 646
Query: 641 ASRPEGLPSSEVSSLSENASGAETKPSALPSGNAEN--IHSASPPLPLSPRLSRKSSGYR 698
P S E ++LS E+KP ALP N +N + SPPLPLSPRLS K SG+R
Sbjct: 647 VRFPVSSASIESATLS-----PESKPGALPLVNNDNDIVSIPSPPLPLSPRLSGKLSGFR 701
Query: 699 SPSNGFEPSAQPNEHG-SEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDI 757
SP+N FEP + G S+Q V DYSVDR+ +T ++D+PS D+ + AQ+D
Sbjct: 702 SPTNNFEPGPTLGDRGDSDQVVIDYSVDRQIDTVCTTLSDLPSLDDDSRNDENKVAQDDS 761
Query: 758 SMVPDPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEV 817
S + +P V+FKHPTHL+TPSEI A SS+E + ++ + GEA +QD +N+D VEV
Sbjct: 762 STILNPTVMFKHPTHLITPSEIF-MAVSSAEATHSTESKSEGEANIQDVSINSDVSNVEV 820
Query: 818 EVKVVGETGGLKN-EFNSR-ESHATVTEKKEKSFYSQASDLGIQMARDCCM---GTYNVD 872
EVKVVGETG +N EF + ES E KEK+F SQASDLGI+MA++C TY V+
Sbjct: 821 EVKVVGETGSTQNDEFGLQGESQNLALENKEKAFCSQASDLGIEMAKECSALSSETYVVE 880
Query: 873 GIRQ--ASDVEAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGK 930
RQ + +EA RPSN GE E D KD KV S + QSP+P KG+K KGK
Sbjct: 881 ESRQVDGARMEALARPSNAGEDEVIDAIKDVSGKVADSAMPTTVPQSPAPTTKGKKHKGK 940
Query: 931 NSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQ 990
NSQ+S PSP+ +NS DSSNEP +PS +A + +LAMQ+ LNQ++S QKE+QKQ
Sbjct: 941 NSQVS----PSPTAFNSTDSSNEPGANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQ 996
Query: 991 MNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNL 1050
++ +V+ PV KEG+RLEA+LGRS+EK VKAN+DALWA EENAKHEKL RDR QQIT+L
Sbjct: 997 ISVLVAVPVTKEGRRLEATLGRSMEKSVKANADALWANILEENAKHEKLVRDRTQQITSL 1056
Query: 1051 ITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQL 1110
ITN++NKDLPAILEKT+KKE+AAV PAVAR I+P +EK+ISSAI E+FQ+GVG+KA++Q+
Sbjct: 1057 ITNSLNKDLPAILEKTVKKEMAAVVPAVARTITPVVEKTISSAITETFQRGVGDKALNQV 1116
Query: 1111 EKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQ 1170
EKS++SKLE TVARQIQ QFQTSGKQALQDAL+SNLE S++PAFEMSCKAMF+Q+DSTFQ
Sbjct: 1117 EKSINSKLEATVARQIQVQFQTSGKQALQDALKSNLEASVVPAFEMSCKAMFDQVDSTFQ 1176
Query: 1171 KGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAGANT 1230
KG+++H T +QQQFE+ HSP+A+ALRDAINSA+S+TQTLSGELADGQRKLLA+AAAGAN
Sbjct: 1177 KGMVEHATTVQQQFESTHSPLALALRDAINSASSMTQTLSGELADGQRKLLALAAAGANP 1236
Query: 1231 KTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSWL 1290
+ LVTQ SNGPL GLH+ VE PLDPTKELSRLI+ERKYEEAF GAL RSDVSIVSWL
Sbjct: 1237 TSVNPLVTQLSNGPLGGLHDKVEMPLDPTKELSRLISERKYEEAFNGALQRSDVSIVSWL 1296
Query: 1291 CSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPADPMISM 1350
CSQVDL GILS VPLPLSQGVLL+LLQQLACDI+K+TPRKL WMTDVAV INP DPMI+M
Sbjct: 1297 CSQVDLQGILSMVPLPLSQGVLLSLLQQLACDINKDTPRKLGWMTDVAVVINPGDPMIAM 1356
Query: 1351 HVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
HVRPIF+QVYQIL H R+LP+T++S+ SIRLLMHVINS+LM+CK
Sbjct: 1357 HVRPIFDQVYQILNHHRSLPTTTSSQGQSIRLLMHVINSMLMTCK 1401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461114|ref|XP_004148288.1| PREDICTED: enhancer of mRNA-decapping protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1512 bits (3914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1250 (62%), Positives = 957/1250 (76%), Gaps = 45/1250 (3%)
Query: 169 PVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228
PVR+ SSK+PKGRHLIG+H VYD++VRL GE+QPQLEVTPITKY SDP LVLGRQIAVN+
Sbjct: 190 PVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNK 249
Query: 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288
YICYGLK GNIR+LNI TALRSL RGH +RVTDMAFFAEDVHLLAS V GR ++W I+
Sbjct: 250 TYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKIS 309
Query: 289 EGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347
EGPDEE KPQI GK+V+++ + +G+ VHPRVCWH HKQE+L++ G +L+ID+ +VG
Sbjct: 310 EGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKAVLRIDTTKVG 369
Query: 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407
KGE FSAE PLK +D+LI+GVQLVGKHDGE+TELSMCQW+T+RL SAS+DGT+KIW+DR
Sbjct: 370 KGESFSAESPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDR 429
Query: 408 KSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466
K++PL VLRP+DG PVN TFL P+ P HIVLIT GPLNRE+KIW+SA EEGWLLPSD
Sbjct: 430 KTSPLLVLRPHDGQPVNAATFLTAPNRPDHIVLITAGPLNREVKIWSSASEEGWLLPSDA 489
Query: 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526
ESWKCTQTLELKSSAE ++E+AFFNQ+VAL++AGL LLANAKKNAIYAIH+DYG NPAST
Sbjct: 490 ESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPAST 549
Query: 527 RMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENA 586
RMDYIAEFTVTMPILS TGT+ + HIVQ+YCVQTQAIQQYALDLSQCLPPPL+N
Sbjct: 550 RMDYIAEFTVTMPILSFTGTS-EILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNV 608
Query: 587 ELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLVP--PILSSSTESVPIASRP 644
LEK DS+ ++ D A +G A+L S G+K D TS P +L + ES IA R
Sbjct: 609 GLEKADSSVSQ--DSAGVEGLAALFPS-GSKPTDTPFTSSTPRGSVLVNGPESA-IAER- 663
Query: 645 EGLPSSEVSSLSENASGAETKPSAL---PSGNAENIHSASPPLPLSPRLSRKSSGYRSPS 701
P+S S + + E+KP+ L PS N + + +ASPPLPLSPRLSR SG+RSP
Sbjct: 664 --YPASTNSQDAVLVANTESKPATLSPVPS-NTDIVSTASPPLPLSPRLSRNLSGFRSPV 720
Query: 702 NGFEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVP 761
F+P + ++H ++ DY+V+R+ + +++V S D + A+ D+S V
Sbjct: 721 VAFDPISAVSDHAGDRRGNDYTVNRQLDAMHTNLSEVSSLDDESRNNEEKIAREDLSNVL 780
Query: 762 DPPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKV 821
PP+VFKHPTHL+TPSEIL +SS + + E +QD VVNND E E+EVK
Sbjct: 781 SPPIVFKHPTHLITPSEILMAVSSSETTNIIEGGKSDSETNIQDVVVNNDNEDAELEVKE 840
Query: 822 VGETGGLKN-EFNSR-ESHATVTEKKEKSFYSQASDLGIQMARDCCM---GTY------N 870
VGE +N E+ SR E E KEK F SQASDLG+++AR+C TY
Sbjct: 841 VGEMKSPQNGEYGSRGEPQNLSLENKEKYFCSQASDLGMEVARECSALSSETYVIEEAPQ 900
Query: 871 VDGIRQASDVEAQ----DRPSNNGEVEEQDMSKDTPAKVGASEASM-VILQSPSPAAKGR 925
VDG AS+V++Q DR S +D+S P E+SM LQ P+P++KG+
Sbjct: 901 VDGNIIASEVDSQAGEGDRTSG------KDVSDKLP------ESSMSTTLQIPTPSSKGK 948
Query: 926 KQKGKNSQISGTSSPSPSPYNSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQK 985
K KGKNSQ SG SPSPS +NS +SS EP S P +DA LLA+QD LNQ+MSTQK
Sbjct: 949 KNKGKNSQASGFVSPSPSAFNSNESSIEPCGSSSLPQSDAAFPPLLAIQDTLNQIMSTQK 1008
Query: 986 EIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQ 1045
E+QKQM S PV KEGKRLEA+LGRS+EK +KAN DALWAR QEE+AK+EKL R+ Q
Sbjct: 1009 EMQKQMQMTFSVPVTKEGKRLEAALGRSMEKALKANHDALWARIQEESAKNEKLLRETTQ 1068
Query: 1046 QITNLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEK 1105
++T+L+ N +NKDLPA LEK +KKE++A+GPAV R I+P +EK+ISSAI +SFQ+GVG+K
Sbjct: 1069 KVTSLVANFVNKDLPAFLEKAMKKEMSAIGPAVVRTITPAIEKTISSAITDSFQRGVGDK 1128
Query: 1106 AVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQI 1165
AV+QLEKSVSSKLE TVAR IQAQFQTSGKQALQDAL+S+ E S+IPAFEMSCK MFEQ+
Sbjct: 1129 AVNQLEKSVSSKLEATVARHIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQV 1188
Query: 1166 DSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAMAA 1225
DSTFQKGL++H+ A QQ F+++HSP+A ALRD+INSA++I Q+LSGELA+GQRKL+A+A
Sbjct: 1189 DSTFQKGLVEHSAAAQQHFDSSHSPLAHALRDSINSASTIAQSLSGELAEGQRKLIALAT 1248
Query: 1226 AGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTKELSRLIAERKYEEAFTGALHRSDVS 1285
AGAN + LV+Q SNGPL LHE VE PLDPTKELSRL++ERKYEEAFT AL RSDV+
Sbjct: 1249 AGANASSLNPLVSQLSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTAALQRSDVN 1308
Query: 1286 IVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINPAD 1345
IVSWLCSQVDL +L+ PL LSQGVLL+LLQQLACDI+K+ RK+AWMT+VA A+NPAD
Sbjct: 1309 IVSWLCSQVDLRAVLAN-PLALSQGVLLSLLQQLACDINKDRSRKIAWMTEVAAAVNPAD 1367
Query: 1346 PMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395
PMI+MH+RPIFEQVYQIL HQR+LP+ S E IR++MH++NS++++CK
Sbjct: 1368 PMIAMHIRPIFEQVYQILNHQRSLPTVSPVELTGIRIIMHLVNSMMVTCK 1417
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1395 | ||||||
| TAIR|locus:2088165 | 1344 | VCS "AT3G13300" [Arabidopsis t | 0.738 | 0.766 | 0.415 | 5.5e-204 | |
| UNIPROTKB|F1NKX2 | 1398 | EDC4 "Uncharacterized protein" | 0.226 | 0.226 | 0.266 | 4.7e-29 | |
| MGI|MGI:2446249 | 1406 | Edc4 "enhancer of mRNA decappi | 0.230 | 0.228 | 0.244 | 4.6e-27 | |
| UNIPROTKB|Q6P2E9 | 1401 | EDC4 "Enhancer of mRNA-decappi | 0.228 | 0.227 | 0.243 | 4.8e-27 | |
| RGD|1562009 | 1407 | Edc4 "enhancer of mRNA decappi | 0.230 | 0.228 | 0.244 | 2.5e-26 | |
| UNIPROTKB|E2RKN5 | 1400 | EDC4 "Uncharacterized protein" | 0.227 | 0.226 | 0.244 | 2.2e-25 | |
| UNIPROTKB|E1BJH1 | 1404 | EDC4 "Uncharacterized protein" | 0.227 | 0.226 | 0.250 | 7.1e-25 | |
| ZFIN|ZDB-GENE-030131-5032 | 1384 | edc4 "enhancer of mRNA decappi | 0.228 | 0.230 | 0.269 | 1.3e-23 | |
| DICTYBASE|DDB_G0288241 | 1476 | DDB_G0288241 "Enhancer of mRNA | 0.159 | 0.150 | 0.248 | 3.7e-21 | |
| FB|FBgn0032340 | 1354 | Ge-1 [Drosophila melanogaster | 0.189 | 0.195 | 0.240 | 5.4e-10 |
| TAIR|locus:2088165 VCS "AT3G13300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1948 (690.8 bits), Expect = 5.5e-204, Sum P(2) = 5.5e-204
Identities = 447/1076 (41%), Positives = 614/1076 (57%)
Query: 169 PVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228
P+R+ S K+PKGR LIG H+VYD+DVRL GE+QPQLEVTPITKY SDP LV+GRQIAVN+
Sbjct: 149 PIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVVGRQIAVNK 208
Query: 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288
YICYGLK GNIR+LNI TALRSL RGH+QRVTDMAFFAEDV +LAS S+DG+ F+W I+
Sbjct: 209 VYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKIS 268
Query: 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348
EG + ED+PQI GKIV+A+QIL + D+ HPRVCWH HKQEIL+++IG +L+ID+ +VG+
Sbjct: 269 EGSEGEDQPQITGKIVLALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGR 328
Query: 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408
GE FSAE PL+CP+D+LI+GVQ+VGKHDGE+T+LSMCQW+TTRL S+S+DGT+KIW DRK
Sbjct: 329 GEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRK 388
Query: 409 STPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467
+ PL VLRP+DGHPV+ TF+ P P HI+LITGGPLNRE+KIW SA EEGWLLP+D E
Sbjct: 389 AQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIWVSAGEEGWLLPADAE 448
Query: 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTR 527
SW+CTQTL+LKSS E R E+AFFNQV+AL+ AGL LLANAK+NA+YA+H+DYG +P TR
Sbjct: 449 SWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNALYAVHLDYGSSPVGTR 508
Query: 528 MDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAE 587
MDY++EFTVTMPILS GT P E IV++YCVQT AIQQY LDL CLPPP+EN
Sbjct: 509 MDYLSEFTVTMPILSFIGTN---DPPEEPIVKVYCVQTLAIQQYTLDLCLCLPPPIENMG 565
Query: 588 LEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLVP-P-ILSSSTESVPIASRPE 645
LEK+DS+ +R ++ +G + E S G K D+ + VP P I+ + +ES S
Sbjct: 566 LEKSDSSVSREANLV--EGMS--EPS-GLKPTDLPSVDSVPKPSIIVNRSESANKLS--- 617
Query: 646 GLPXXXXXXXXXXXXGAETKPSALPS--GNAENIHXXXXXXXXXXXXXXXXXGYRSPSNG 703
P E K S LPS A + + GY +P
Sbjct: 618 -FPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLSSKLSGYHTPVEA 676
Query: 704 FEPSAQPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRN-SAQNDISMVPD 762
EP +E G + DYSVDR+ + E+ DV S + D N + +D+S +
Sbjct: 677 IEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSNVTPDDDVSGMRS 736
Query: 763 PPVVFKHPTHLVTPSEILSTAASSSENSQFSQRMNVGEAKVQDAVVNNDAXXXXXXXXXX 822
P FKHPTHLVTPSEIL SS+E S ++ +A +QD VNND
Sbjct: 737 PSAFFKHPTHLVTPSEILM-GVSSAEASITTEDRRDRDANIQD--VNNDPRDTEVEVKEI 793
Query: 823 XXXXXLKN-EFNSR-ESHATVTEKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASDV 880
+N E N E+ +E +EK F SQ S+L +MARDC T +G +
Sbjct: 794 SEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPST---EGTFIPGES 850
Query: 881 EAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKXXXXXXXXXX 940
+A +P G+ D S+ PAK+ + S P
Sbjct: 851 KAYGQPIKAGDESGVD-SRGGPAKLLKGKKQKA-KNSQGPGLSSTSSN--VANLADSFNE 906
Query: 941 XXXXXXXXXXXXEPACISGAPSTDATMSQLLAMQDMLNQMMSTQ--KEIQKQMNSVVSAP 998
P ++ + + M+ MQ L+ + KE K++ +
Sbjct: 907 QSQSLSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKE-SKRLEVALGRM 965
Query: 999 VNKEGK-RLEASLGRSIEKVVKANSDALWARFQE-ENAKHEKLERDRMQQITNLITNTIN 1056
+ K K +A R E+ VK N AL Q+ NA + ++ + + TI
Sbjct: 966 IEKSSKSNADALWARIQEETVK-NEKALRDHAQQIVNATTNFMSKE----LNAMFEKTIK 1020
Query: 1057 KDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSS 1116
K+L AI + + + V+ AI+ + ++ I + K V K + + + + +
Sbjct: 1021 KELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVARQIQA 1080
Query: 1117 KLETTVARQIQAQFQTSGKQAL----QDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKG 1172
+ +T+ + +Q ++S + ++ + A ++ + I AF+ F G
Sbjct: 1081 QFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFD-QIDSAFQKGIAEHTNAAQQRFDSG 1139
Query: 1173 LIKHTTAIQQQFETAHS-PMAIALRDAINSATSITQTLSGELADGQRKLLAMAAAG 1227
+ +++ +A S A++ A + +G + G L+ + G
Sbjct: 1140 HSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGGSNSLVTQLSGG 1195
|
|
| UNIPROTKB|F1NKX2 EDC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.7e-29, Sum P(3) = 4.7e-29
Identities = 99/371 (26%), Positives = 171/371 (46%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ +Y + G IAV+ +Y+ Y ++ + +R+L++ TA R+LL+G T
Sbjct: 109 KVKIQPVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFT 168
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317
V D+AF + + LA G F+W + EEDK Q +I+V I+ DG ++
Sbjct: 169 GGVADLAFAHLNSNQLACLDEAGNLFVWRLAM---EEDKIQ--EEILVNIK-RPDGTPLN 222
Query: 318 P--RVCWHP--------HKQE---ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364
R+ W P + +E L L +R D + + R P++ P
Sbjct: 223 TSRRIIWCPFIPDDNEENSEEGSQTLALLHEDRAEVWDLDIIRSNNR---SWPVEVP--N 277
Query: 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYD 419
+ G +V H ++E ++ T LA+AS DG VK W + + P L +P+D
Sbjct: 278 IKEGFIVVKGHSTYLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHD 336
Query: 420 GHPVNCVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473
G P++C+ F P P LITG NRELK+W + SW C Q
Sbjct: 337 GRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQ 384
Query: 474 TLELKSSAELRLEDAFFNQV-VALNRAGLFL-LANAKKNAIYAIHMDYGPNPASTRMDYI 531
T+ + S ++ + + V L+ + +L L++ ++ +Y + + I
Sbjct: 385 TVRSRFSPDIFSSMSILPSLKVCLDLSAEYLILSDVQRKVLYVMELMQNQEKGKAYFSSI 444
Query: 532 AEFTVTMPILS 542
+EF +T P+LS
Sbjct: 445 SEFLLTHPVLS 455
|
|
| MGI|MGI:2446249 Edc4 "enhancer of mRNA decapping 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 89/364 (24%), Positives = 159/364 (43%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ KY + G IAV+ +++ Y ++ N +R++++ T+ R+LL+G T
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317
V D+AF + LA G F+W + K +I +I+V I+ +G +++
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGNLFVWRLALV-----KGKIQEEILVHIR-QPEGTALN 230
Query: 318 P--RVCWHP---HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC-PVD--ELINGV 369
R+ W P + E + + +R + PVD ++ G
Sbjct: 231 HFRRIIWCPFIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGF 290
Query: 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDGHPVN 424
+V H ++E ++ T LA+AS DG VK W + + P L +P+DG P++
Sbjct: 291 IVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLS 349
Query: 425 CVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478
C+ F P P LITG NRELK+W + SW C QT+
Sbjct: 350 CLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQTIRFS 397
Query: 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM 538
+ +V A +L++ ++ +Y + + + I+EF +T
Sbjct: 398 PDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTH 457
Query: 539 PILS 542
P+LS
Sbjct: 458 PVLS 461
|
|
| UNIPROTKB|Q6P2E9 EDC4 "Enhancer of mRNA-decapping protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 4.8e-27, Sum P(3) = 4.8e-27
Identities = 89/366 (24%), Positives = 157/366 (42%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ KY + G IAV+ +++ Y ++ N +R++++ T+ R+LL+G T
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDS 315
V D+AF + LA G F+W + G +E+ I+V I+ +G
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEE-------ILVHIR-QPEGTP 228
Query: 316 VHP--RVCWHP---HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC-PVD--ELIN 367
++ R+ W P + E + + +R + PVD ++
Sbjct: 229 LNHFRRIIWCPFIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQ 288
Query: 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDGHP 422
G +V H ++E ++ T LA+AS DG VK W + + P L +P+DG P
Sbjct: 289 GFIVVKGHSTCLSEGALSPDGTV-LATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRP 347
Query: 423 VNCVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476
++C+ F P P LITG NRELK+W + SW C QT+
Sbjct: 348 LSCLLFCDNHKKQDPDVPFWRFLITGADQNRELKMWCTV------------SWTCLQTIR 395
Query: 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTV 536
+ +V A +L++ ++ +Y + + I+EF +
Sbjct: 396 FSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGHACFSSISEFLL 455
Query: 537 TMPILS 542
T P+LS
Sbjct: 456 THPVLS 461
|
|
| RGD|1562009 Edc4 "enhancer of mRNA decapping 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 89/364 (24%), Positives = 158/364 (43%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ KY + G IAV+ +++ Y ++ N +R++++ T+ R+LL+G T
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317
V D+AF + LA G F+W + K +I +I+V I+ +G ++
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGDLFVWRLALV-----KGKIQEEILVHIR-QPEGTPLN 230
Query: 318 P--RVCWHP---HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC-PVD--ELINGV 369
R+ W P + E + + +R + PVD ++ G
Sbjct: 231 HFRRIIWCPFIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGF 290
Query: 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDGHPVN 424
+V H ++E ++ T LA+AS DG VK W + + P L +P+DG P++
Sbjct: 291 IVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLS 349
Query: 425 CVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478
C+ F P P LITG NRELK+W + SW C QT+
Sbjct: 350 CLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQTIRFS 397
Query: 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM 538
+ +V A +L++ ++ +Y + + + I+EF +T
Sbjct: 398 PDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTH 457
Query: 539 PILS 542
P+LS
Sbjct: 458 PVLS 461
|
|
| UNIPROTKB|E2RKN5 EDC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 90/368 (24%), Positives = 160/368 (43%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ KY + G IAV+ +++ Y ++ N +R++++ T+ R+LL+G T
Sbjct: 118 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 177
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDS 315
V D+AF + LA G F+W + G +E+ I+V IQ +G
Sbjct: 178 GSVADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEE-------ILVHIQ-QPEGTP 229
Query: 316 VHP--RVCWHPH--KQEILMLAIGN---RILKIDSNRVGKGERFSAEE---PLKCPVDEL 365
++ R+ W P ++ G+ +L D V + + P++ V ++
Sbjct: 230 LNHFRRIIWCPFIPEENEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVR--VSQI 287
Query: 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDG 420
G +V H ++E ++ T LA+AS DG VK W + + P L +P+DG
Sbjct: 288 KQGFIVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDG 346
Query: 421 HPVNCVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474
++C+ F P P LITG NRELK+W + SW C QT
Sbjct: 347 RSLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQT 394
Query: 475 LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534
+ + +V A +L++ ++ +Y + + I+EF
Sbjct: 395 IRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGRACFSSISEF 454
Query: 535 TVTMPILS 542
+T P+LS
Sbjct: 455 LLTHPVLS 462
|
|
| UNIPROTKB|E1BJH1 EDC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 92/367 (25%), Positives = 158/367 (43%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN-----IRILNIITALRSLLRGHT 257
++++ P+ KY + G IAV+ +++ Y ++ N +R++++ T+ R+LL+G T
Sbjct: 118 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 177
Query: 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDS 315
V D+AF + LA G F+W + G +E+ I+V I+ +G
Sbjct: 178 GSVADLAFAHLNSPQLACLDEAGNLFVWRLALINGKIQEE-------ILVHIR-QPEGTP 229
Query: 316 VHP--RVCWHPHKQEIL--MLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVD--ELI 366
++ R+ W P E G+ +L D V + PVD ++
Sbjct: 230 LNHFRRIIWCPFIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRTNHST-WPVDVSQIK 288
Query: 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDGH 421
G +V H ++E ++ T LA+AS DG VK W + + P L +P+DG
Sbjct: 289 QGFIVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGR 347
Query: 422 PVNCVTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475
P++C+ F P P LITG NRELK+W + SW C QT+
Sbjct: 348 PLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQTI 395
Query: 476 ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535
+ +V A +L++ ++ +Y + + I+EF
Sbjct: 396 RFSPDIFSPVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGRACFSSISEFL 455
Query: 536 VTMPILS 542
+T P+LS
Sbjct: 456 LTHPVLS 462
|
|
| ZFIN|ZDB-GENE-030131-5032 edc4 "enhancer of mRNA decapping 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 98/364 (26%), Positives = 158/364 (43%)
Query: 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN----IRILNIITALRSLLRGHTQ 258
++++ P+ KY + G IAV+ Y+ Y ++ N IR+L++ + RSLL+G T
Sbjct: 115 KVKIQPVAKYDWEHKYYYGNLIAVSNTYLAYAIRGANNHSMIRVLHLSSTERSLLKGFTG 174
Query: 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD-SVH 317
VTD+AF D LL G FIW +T +I +++V I+ D + +
Sbjct: 175 AVTDLAFAHLDSTLLGCVDEAGNMFIWQLTS-----HSSKIQDEVIVHIRRPEDTPLNSN 229
Query: 318 PRVCWHPH----KQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVD--ELINGVQ 370
R+ W P E A +L D V + + PVD EL G
Sbjct: 230 RRLIWCPFIPEDNDESPEDACQTLALLHEDRAEVWDLDILRSNNS-SWPVDATELKEGFI 288
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD---DRKSTP--LAVLRPYDGHPVNC 425
+ H I+E ++ T LA+AS DG VK W + + P L +P++G P++C
Sbjct: 289 TIRGHAARISEGALSPDGTV-LATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGQPLSC 347
Query: 426 VTFLIG-----PH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479
+ F P P LITG N+ELK+W + SW C QT+ S
Sbjct: 348 LLFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTV------------SWTCLQTIRF-S 394
Query: 480 SAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM 538
+ +L+ + FL L++ ++ +Y + + ++EF +T
Sbjct: 395 PDPFNC-GVLPSLKASLDLSAEFLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTH 453
Query: 539 PILS 542
P+LS
Sbjct: 454 PVLS 457
|
|
| DICTYBASE|DDB_G0288241 DDB_G0288241 "Enhancer of mRNA-decapping protein 4" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 58/233 (24%), Positives = 120/233 (51%)
Query: 990 QMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITN 1049
Q ++ S + + +E +L +E+ + AN +A+ ++E + E +E++R +++
Sbjct: 1005 QQSNYTSNNIQQLFMEMENNLFNRLERSM-ANQ---FAQHEKERIEREAMEKERHEKLLT 1060
Query: 1050 LITNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQ 1109
++ +I + + LEK +KKEIAA + + + T+E++I + +K + K +
Sbjct: 1061 IVHQSITTMMKSNLEKIVKKEIAATFVNLEKTLPTTVEQTIGKIAQDQLKK-LSVKTDTL 1119
Query: 1110 LEKSVSSKLETTVARQIQAQ-FQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDST 1168
L KS S + + V + I + F+ K ++ S ++ +IP FE SC++MF+ + T
Sbjct: 1120 L-KSSSEAIVSNVKQLICSDIFEGLLKNQMETIFISYFQSILIPGFEKSCQSMFKHLSYT 1178
Query: 1169 FQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLL 1221
F+ G AIQ Q ++ +AL +N ++ + + +L + Q +LL
Sbjct: 1179 FENGF---NQAIQHQTLSSQG-QHLALEKILNEGNTVIKQCTTQLVEQQDQLL 1227
|
|
| FB|FBgn0032340 Ge-1 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 77/320 (24%), Positives = 145/320 (45%)
Query: 225 AVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFF 283
A+N N G++ G +R+ NI T++R+L++G + V D+ F D +LA V F
Sbjct: 156 AINVNNKATGME-GMVRVCNIATSMRALIKGMSGEVLDLQFAHTDCERILAVIDVSS-LF 213
Query: 284 IWNITEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHK-QEILMLAIGNRILKI 341
++ + ++ + +L +V+ ++ +A+ + V W P+ + I +
Sbjct: 214 VYKV-----DQIEGNLLCNLVLKVEDPIANYVPEYDMVSWCPYVCSSSATVPIND---DD 265
Query: 342 DSNRV---GKGERFSAEEPLKCPVDELING-VQLVGKHDG--EITELSM--CQWLT---T 390
D N++ + +F + +K V E G +Q G +I E S+ C L+ T
Sbjct: 266 DENQLLIWSRSSQFQCFQ-VKMIVSEHGRGKIQPAALESGYLKIEEDSLITCAALSPDGT 324
Query: 391 RLASASLDGTVK-----IWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-P------QHIV 438
+A+A DG V+ ++D R L +P+DG V + FL + P QH+
Sbjct: 325 TVAAACADGLVRFYQIYLFDVRNHRCLHEWKPHDGKKVCSLFFLDNINKPVEESYWQHV- 383
Query: 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498
IT N E+K+W + WKC QT+ + +S L+ F + ++R
Sbjct: 384 -ITTSDANTEIKLW------------NCSLWKCLQTINVVASPS-SLQPRNF--IAGIDR 427
Query: 499 AGLFLLANAKKN-AIYAIHM 517
+ +L+ + + A+Y + +
Sbjct: 428 SANYLVLSCLDSLAVYVMQI 447
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LTT8 | VCS_ARATH | No assigned EC number | 0.5615 | 0.8931 | 0.9270 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1395 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-08 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-07 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-06 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 8e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 2e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-05 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 1e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.002 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 0.002 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 0.003 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 58/249 (23%), Positives = 90/249 (36%), Gaps = 54/249 (21%)
Query: 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308
LR L+GHT VT +AF D LLA+ S DG +W+ E + + V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVA 58
Query: 309 ILADGDSV-----------------HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGER 351
ADG + H + +A R+
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF------SPDGRI----L 108
Query: 352 FSAEEPLKCPVDELING--VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409
S+ V ++ G + + H + ++ T +AS+S DGT+K+WD R
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG 167
Query: 410 TPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467
+A L GH VN V F P L++ + +K+W D+
Sbjct: 168 KCVATL---TGHTGEVNSVAF----SPDGEKLLSSS-SDGTIKLW------------DLS 207
Query: 468 SWKCTQTLE 476
+ KC TL
Sbjct: 208 TGKCLGTLR 216
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 58/245 (23%), Positives = 91/245 (37%), Gaps = 69/245 (28%)
Query: 240 IRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298
IR+ ++ T L GHT V+ +AF + +L+S+S D +W++ G
Sbjct: 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETG-------- 125
Query: 299 ILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAE 355
+ L D V+ V + P +A + +K+ R GK
Sbjct: 126 ------KCLTTLRGHTDWVN-SVAFSPDGT---FVASSSQDGTIKLWDLRTGKCVA---- 171
Query: 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT--RLASASLDGTVKIWDDRKSTPLA 413
L G H GE+ + +L S+S DGT+K+WD L
Sbjct: 172 --------------TLTG-HTGEVN---SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
Query: 414 VLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471
LR GH VN V F P L+ G + +++W D+ + +C
Sbjct: 214 TLR---GHENGVNSVAFS--PDGY---LLASGSEDGTIRVW------------DLRTGEC 253
Query: 472 TQTLE 476
QTL
Sbjct: 254 VQTLS 258
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 51/221 (23%)
Query: 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296
I++ ++ T + LRGHT V F+ D +AS+S DG +W++ G K
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNS-VAFSPDGTFVASSSQDGTIKLWDLRTG-----K 168
Query: 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356
+ L V + P E L+ + + +K+ GK
Sbjct: 169 C---------VATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGK-------- 210
Query: 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR--LASASLDGTVKIWDDRKSTPLAV 414
L G H+ + + LAS S DGT+++WD R +
Sbjct: 211 ----------CLGTLRG-HENGVNS---VAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
Query: 415 LRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453
L GH V + + P L +G + ++IW
Sbjct: 257 LS---GHTNSVTSLAW----SPDGKRLASGS-ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (141), Expect = 1e-08
Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 43/229 (18%)
Query: 227 NRNYICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284
N + G +++ ++ T + + L GH++ VT +AF + L + +S+DG +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 285 WNITEGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343
W++ G + LA D V + + P ++ + +++
Sbjct: 183 WDLRTGKP--------------LSTLAGHTDPVS-SLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 344 NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403
GK + L G D ++ S + LAS S DGT+++
Sbjct: 228 LSTGK-----------------LLRSTLSGHSDSVVSSFS---PDGSLLASGSSDGTIRL 267
Query: 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452
WD R S+ L V V F P +L +G + +++W
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAF----SPDGKLLASGSS-DGTVRLW 311
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 32/136 (23%), Positives = 36/136 (26%), Gaps = 23/136 (16%)
Query: 48 PSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQ---QQQQNRP 104
P + P P + P GP YP PP + Q QQ Q
Sbjct: 172 LPQPPQQVLPQGMP---PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA 228
Query: 105 QILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVI 164
Q P Q+PQ P L F Q PP P PP
Sbjct: 229 QPPLPPQLPQQP-----------------PPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQ 271
Query: 165 PSAPPVRLRSSKVPKG 180
P A P G
Sbjct: 272 PQAQPPPQNQPTPHPG 287
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 2e-06
Identities = 36/129 (27%), Positives = 44/129 (34%), Gaps = 12/129 (9%)
Query: 47 SPSFPSPSSVSSPSPYLTPSSSYPPPTGPYP----PYHYYPSPPPPQHQLFQQQQQQQQN 102
+ S P + PSP+ S+ PPP P P H+ PS PP QL Q Q Q
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418
Query: 103 RPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQP--PSPTLPPPSDS 160
P Q P P ST S ++ QH PPPS
Sbjct: 419 ------PAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLP 472
Query: 161 TVVIPSAPP 169
T + P
Sbjct: 473 TSTPAAPPR 481
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (121), Expect = 3e-06
Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 59/285 (20%)
Query: 241 RILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300
++++ LLRGH +T +AF + D LL S S DG +W++ G
Sbjct: 49 SLVSLPDLSSLLLRGHEDSITSIAF-SPDGELLLSGSSDGTIKLWDLDNGEKL------- 100
Query: 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360
+ SV P IL+ + + G+
Sbjct: 101 ----IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL--------- 147
Query: 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG 420
++ + H +T L+ + +SLDGT+K+WD R PL+ L G
Sbjct: 148 --------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL---AG 196
Query: 421 H--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478
H PV+ + F P +LI G + +++W D+ + K ++
Sbjct: 197 HTDPVSSLAF----SPDGGLLIASGSSDGTIRLW------------DLSTGKLLRST--- 237
Query: 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523
L + V + + G L + + I + +
Sbjct: 238 ------LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 37/177 (20%)
Query: 230 YICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288
++ + G I++ ++ T + L GHT V +AF + LL+S+S DG +W+++
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS 207
Query: 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348
G + LG + + V+ V + P +L + +++
Sbjct: 208 TG-------KCLG------TLRGHENGVN-SVAFSPDGY-LLASGSEDGTIRVW------ 246
Query: 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD 405
E ++ L G H +T L+ RLAS S DGT++IWD
Sbjct: 247 --DLRTGECVQT----------LSG-HTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 8e-06
Identities = 36/133 (27%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 37 MIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQ 96
+ P P P Y P P P Y P P Q Q
Sbjct: 749 VEPVQQPQQPVAPQQQYQQPQQPVA---PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 805
Query: 97 QQQQQNRPQILY--PQQ--IPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQP--P 150
Q QQ PQ Y PQQ PQP + + LLM ++ H+P P
Sbjct: 806 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTP 865
Query: 151 SPTL----PPPSD 159
P+L PPPS+
Sbjct: 866 LPSLDLLTPPPSE 878
|
Length = 1355 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 34/131 (25%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 27 LLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPP 86
+P + P S + P P YPPP+ P PP P
Sbjct: 81 SPQPDQQQQSQAPPSHQYPSQLP-PQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQ 139
Query: 87 PPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQ 146
PQ QQQQ Q+ PQ QQ P P + S S Q Q
Sbjct: 140 QPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESP----------YQPQ 189
Query: 147 HQPPSPTLPPP 157
PP+ LP
Sbjct: 190 SYPPNEPLPSS 200
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 69 YPPPTGPYPPYHYYPSP----------PPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSP 118
Y T YPP + P PPP + QQQQ YP+Q PQ P
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQP 62
Query: 119 SHNPNPNSTSSSSSGN 134
+ S +S G
Sbjct: 63 PQFSSFLSQFKNSDGT 78
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 42/160 (26%), Positives = 57/160 (35%), Gaps = 28/160 (17%)
Query: 26 KLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYY--- 82
+LL+P P +P L S P+PS+ + P P +P ++ P P P
Sbjct: 171 QLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVP-PQGSPIAAQPAPQPQQPSPLSLISA 229
Query: 83 --------PSPPPPQHQLFQQQQQQQQNRPQILYPQQI---PQPP-------SPSHNPNP 124
PSP PP QQ Q P +PQ P PP P +P
Sbjct: 230 PSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHP 289
Query: 125 NSTS------SSSSGNNLLMAFFANQHQHQPPSPTLPPPS 158
+S + S L + A H H PPS + P
Sbjct: 290 SSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQ 329
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-05
Identities = 22/109 (20%), Positives = 28/109 (25%), Gaps = 22/109 (20%)
Query: 59 PSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPS- 117
P + P P P P Q QQ Q ++ P PQPP
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM---PPPPPQPPQQ 265
Query: 118 ------PSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDS 160
P P P + + Q + LPPP
Sbjct: 266 QQQPPQPQAQPPPQNQPTPH------------PGLPQGQNAPLPPPQQP 302
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 26/123 (21%)
Query: 47 SPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQI 106
+ P+ +S S P S+P P PP P +
Sbjct: 175 EDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPS------------SFQSD 222
Query: 107 LYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPS 166
P P +PS P P + Q P + P+ +
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPP--------------VQQVPPLSTAKPTPPSASATP 268
Query: 167 APP 169
AP
Sbjct: 269 API 271
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 2e-04
Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 42/228 (18%)
Query: 227 NRNYICYGLKLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284
I G G IR+ ++ T LRS L GH+ V ++ F+ D LLAS S DG +
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV--VSSFSPDGSLLASGSSDGTIRL 267
Query: 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN 344
W++ ++ L+ S V + P + + + + D
Sbjct: 268 WDLRSS-------------SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Query: 345 RVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404
+ + H+G ++ LS + ++ S DGT+++W
Sbjct: 315 TGKLLSSLTLKG------------------HEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Query: 405 DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452
D R P + V V+F +++ G + +++W
Sbjct: 357 DLRTGKP--LKTLEGHSNVLSVSFSP-----DGRVVSSGSTDGTVRLW 397
|
Length = 466 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 30 PSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQ 89
S+P + P + + P PS S SS P + S PP P P + P P P
Sbjct: 183 SPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAA 242
Query: 90 HQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNS 126
QQ + + P PPS S P P
Sbjct: 243 PPPPPVQQVPPLSTAK-------PTPPSASATPAPIG 272
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
L+GHT VT +AF D LAS S DG +W+
Sbjct: 8 LKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 37/167 (22%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 14 TGGGGSGGFDMNKLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPT 73
GG + G D+ + +P S P + P+ S + P P
Sbjct: 2852 LGGSVAPGGDVRR--RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909
Query: 74 GPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPP-SPSHNPNPNSTSSSSS 132
P +PPPPQ Q Q Q P P PQPP +P+ +P S +
Sbjct: 2910 QP-------QAPPPPQPQPQPPPPPQPQPPPP---PPPRPQPPLAPTTDPAGAGEPSGAV 2959
Query: 133 GNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPK 179
L A + P +P P+ S P++ L + +
Sbjct: 2960 PQPWLGALVPG--RVAVPRFRVPQPAPS-REAPASSTPPLTGHSLSR 3003
|
Length = 3151 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 3e-04
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 238 GNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD-EE 294
G IR+ ++ ++ L L GH+ V +AF D LLAS S DG +W++ G
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS-PDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 295 DKPQILGKIVVAIQILADGDSV-------HPRVCWH-PHKQEILMLAIGNRILKIDSNRV 346
+ V ++ DG + W + + L + +L + +
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD 381
Query: 347 GKGERF-SAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD 405
G+ S + ++ + ++ + H +T L + LAS S D T+++WD
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS-LASGSSDNTIRLWD 440
Query: 406 DRKSTP 411
+ S
Sbjct: 441 LKTSLK 446
|
Length = 466 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 30 PSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQ 89
PS P+S + ++ P PS +P P ++ PP GP P PPPP
Sbjct: 195 PSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAP------PPPPV 248
Query: 90 HQLFQQQQQQQQNRPQILYPQQIPQP 115
Q+ + P I
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGI 274
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
L+GHT VT +AF + D +LLAS S DG +W+
Sbjct: 7 LKGHTGPVTSVAF-SPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL-LRGHTQRVTDMAFFAEDV 270
V + + + G + G IR+ ++ T L GHT VT +A+ + D
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW-SPDG 273
Query: 271 HLLASASVDGRFFIWN 286
LAS S DG IW+
Sbjct: 274 KRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 21/83 (25%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 48 PSFPSPSSVSSPSPYLTPSSSYPPPTG-----PYPPYHYYPSPPPPQHQLFQQQQQQQQN 102
P P P P + PPP P P PPPQ Q QQ
Sbjct: 257 PPPPQPPQQQQQPP---QPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP--QLLPLVQQP 311
Query: 103 RPQILYPQQIPQPPSPSHNPNPN 125
+ Q PQ Q S
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREA 334
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWD 405
H G +T ++ LAS S DGT+K+WD
Sbjct: 11 HTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 34/167 (20%), Positives = 50/167 (29%), Gaps = 20/167 (11%)
Query: 25 NKLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYP-------PPTGPYP 77
L P+++P +P T + P+ P P P S P PP+
Sbjct: 2815 AAALPPAASPAGPLPPPT--SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA 2872
Query: 78 PYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLL 137
P+ PP + + + L P Q +PP P P P
Sbjct: 2873 AKPAAPARPPVRR--LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP----- 2925
Query: 138 MAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLI 184
Q Q PP P P P + P+ + P L+
Sbjct: 2926 ----PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALV 2968
|
Length = 3151 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWD 405
H G +T ++ LAS S DGTV++WD
Sbjct: 10 HTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 20/89 (22%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 83 PSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFA 142
P PPP QL Q Q + Q +P HN S +++ L A A
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQAL----QALPAGDQQQHNTPTGSPAANPPATFALPAGPA 108
Query: 143 NQHQHQPPSPTLPPPSDSTVVIPSAPPVR 171
P P V A
Sbjct: 109 GPTIQTEPGQLYPVQVPVMVTQNPANSPL 137
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 70 PPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPN 125
P P H+ P+ P P Q FQ Q Q Q + PQ P P P
Sbjct: 77 PGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPL 132
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 13/139 (9%)
Query: 40 NSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQ 99
N + SP+ +P P L +P P P P P P +QQ
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ-- 433
Query: 100 QQNRPQILYPQQIPQPPSPSHNPNPNSTSSS-----SSGNNLLMAFFANQHQHQPPSPTL 154
P + + P PPSP + N S S M F N + QP +
Sbjct: 434 ----PPV--ARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASS 487
Query: 155 PPPSDSTVVIPSAPPVRLR 173
+ + V A +LR
Sbjct: 488 SDAAQTGVFEGVAELEKLR 506
|
Length = 620 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 22/111 (19%), Positives = 25/111 (22%)
Query: 48 PSFPSPSSVSSPSPYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQIL 107
F S + P L P PP P + PP QQQQQ
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP 276
Query: 108 YPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPS 158
PQ P P L + Q P
Sbjct: 277 PPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1395 | |||
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.88 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.87 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.86 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.82 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.8 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.79 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.79 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.77 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.76 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.73 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.72 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.71 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.68 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.67 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.63 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.59 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.58 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.57 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.54 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.54 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.53 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.52 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.5 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.5 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.46 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.46 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 99.45 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.43 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.41 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.4 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.39 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.38 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.32 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.29 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.2 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.18 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.18 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.13 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.13 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.1 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.1 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.09 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.07 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.07 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.07 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.04 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.04 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.04 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.04 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.99 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.99 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.99 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.98 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.94 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.91 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.86 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.86 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.81 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.79 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.76 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.69 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.64 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.64 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.61 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.61 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.6 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.59 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.57 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.56 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.56 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.54 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.53 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.48 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.47 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.4 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.36 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.33 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.33 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.33 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.31 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.3 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.29 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.25 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.25 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.2 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.2 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.15 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.06 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.05 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.99 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.93 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.91 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.84 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.81 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.8 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.78 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.68 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.68 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.6 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.6 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.59 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.55 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.55 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.52 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.51 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.4 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.28 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.26 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.25 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.24 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.23 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.15 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.07 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.0 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.96 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.84 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.71 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.69 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.6 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.5 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.48 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.36 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.31 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.28 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.25 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.11 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.11 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.0 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.99 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.96 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.83 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.65 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.61 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.56 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.43 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.95 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.94 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.73 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.72 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.68 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.46 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.32 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.11 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.08 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.03 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.82 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.77 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.64 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.58 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.27 | |
| PRK10115 | 686 | protease 2; Provisional | 93.27 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.23 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.19 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.99 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.94 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 92.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 92.69 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.54 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.45 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.36 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.3 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.17 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.16 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.0 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 91.96 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.9 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 91.88 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.86 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.97 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.78 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 90.74 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.56 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 90.54 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 90.0 | |
| PF01442 | 202 | Apolipoprotein: Apolipoprotein A1/A4/E domain; Int | 89.27 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.92 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 88.79 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.34 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 88.1 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 87.19 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 86.95 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.92 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 86.56 | |
| PRK10115 | 686 | protease 2; Provisional | 86.34 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 85.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.66 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 85.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 85.26 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.06 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.67 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 82.26 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 82.19 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 81.36 | |
| PLN02153 | 341 | epithiospecifier protein | 81.22 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 80.98 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 80.45 |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-113 Score=1001.83 Aligned_cols=1123 Identities=50% Similarity=0.749 Sum_probs=885.6
Q ss_pred CCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC
Q 039790 167 APPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII 246 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~ 246 (1395)
-+.+++-.+..|.|+.+.|...||+++. ..|+.++++.++++..+......|..+-|.++.-|+++|.++|.|++.+++
T Consensus 135 v~dl~fah~~~pk~~~~vg~lfVy~vd~-l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ 213 (1283)
T KOG1916|consen 135 VGDLQFAHTKCPKGRRLVGELFVYDVDV-LQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNIN 213 (1283)
T ss_pred cccccccccCChHHHHHhhhhheeehHh-hccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeec
Confidence 3456666677788887799999999999 789999999999999998888888888888899999999999999999999
Q ss_pred CCceEEeccCCCCeEEEEEe----------eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 247 TALRSLLRGHTQRVTDMAFF----------AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 247 ~~~~~~l~~H~~~V~slaf~----------s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
+.....|++|..++.+++|+ ++||..|+.++.||.+++|.+. +.|+.+..+.........
T Consensus 214 ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy----------i~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 214 RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY----------ITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee----------eeccccHhhhhccCCCCC
Confidence 98888889999999998875 4566666666666666666553 222222222222222334
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
...+||+-++..+..+..+...++|+..+.+++..|....++.|.++++++++.....|++.|+.+..+.+-...+++-+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~ 363 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRS 363 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhh
Confidence 56788988888888888888999999999999999999999999999999999999999999999887776656788889
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc-ccEEEE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES-WKCTQT 474 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~-~~~l~t 474 (1395)
.|++|++|.-+.-..+.....|.+++|.+-.|-..+. ++...+++||-.++.+++|-....++|..+++.+. |.|+++
T Consensus 364 v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~g~ls~a~v~~k~rcv~t 443 (1283)
T KOG1916|consen 364 VDGTIKIWQNRKAQPLVVSRPHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEEGWLSPADVESKWRCVQT 443 (1283)
T ss_pred hHHHHHHhhcchhhhhhhhhhhhcceeccccccccCCCccccccccCCcchhhhhhhhhcccccccchhhhhhhHHHhhh
Confidence 9999999987776666666777777888876654433 77888999888899999999998889999999887 999988
Q ss_pred -E-eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCc
Q 039790 475 -L-ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASP 552 (1395)
Q Consensus 475 -l-~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~ 552 (1395)
+ ............+|++.+.+++..|.++.+ ...+.+|+.++.++.....+.++++.+|....++++|. +. + +
T Consensus 444 klqd~~~~~ePq~~~d~~n~~~als~h~~~~~a-~sr~el~sv~l~~~a~~~e~~~~~~~e~~~p~d~Ls~~-te-~--p 518 (1283)
T KOG1916|consen 444 KLQDLKSSTEPQAEPDFFNQVIALSEHGLLLLA-ASRNELYSVHLDYGASPVETDMDYLSEFTVPMDILSFI-TE-D--P 518 (1283)
T ss_pred hhhhcccccCCccchhhhcchHHHHHHHHHHHh-hhhhhhhhccCCcccCCCcchhhhhhhcCCCccceeec-cC-C--C
Confidence 5 222222223466788888888888887776 56778999999999888888999999999999999998 32 2 2
Q ss_pred CCCCeEEEEEcCCCceeeecccceEEecCCCCCeecccCCCceEEEeecCCCCcceeeccCCCCccccccCCCCCCCccc
Q 039790 553 DGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLVPPILS 632 (1395)
Q Consensus 553 s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~~~~~~~s~~~~~~~~~~ 632 (1395)
...-++++||+++-.+++|... ++..+.++++++..+.+--.+..+-. . -.+.++..+ ++++++..
T Consensus 519 p~~~~~~v~~vqt~alqq~Ta~------p~r~s~Gssss~ssvs~~a~av~sms----~-tsa~kpt~~---~p~P~~l~ 584 (1283)
T KOG1916|consen 519 PEEPTVKVYCVQTLALQQYTAD------PPRESSGSSSSDSSVSREANAVESMS----E-TSAVKPTLL---PPKPSILV 584 (1283)
T ss_pred CCCCCCceeeeehHHHHHHhcC------CcccccCcccchhHHHHHhhhhhhhc----c-cccCCcccC---CCCchhhh
Confidence 4566899999999999998766 44556777777766653111111100 0 000011111 12223333
Q ss_pred CCCCCCCCCCCCCCCCCCcc---cccCcCCCCCCCCCCCCCCCCccccccCC-CCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 039790 633 SSTESVPIASRPEGLPSSEV---SSLSENASGAETKPSALPSGNAENIHSAS-PPLPLSPRLSRKSSGYRSPSNGFEPSA 708 (1395)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1395)
.+++ -.+.++.++ +...+.+...+ +.++...+.+++ |.+|. +++++.|++..+-..+++..
T Consensus 585 ~~s~-------~~n~~S~~a~sass~aa~p~~~~------p~ts~~p~a~~~sp~~pg--q~~S~~Sa~~~~v~~~epv~ 649 (1283)
T KOG1916|consen 585 NRSE-------LANDLSFPASSASSLAAVPPNGE------PKTSGAPSAYALSPQLPG--QLSSKLSAYHTPVEAVEPVG 649 (1283)
T ss_pred ccHh-------hhhccCCCccccccccccCCCCC------CCCCCCCcccccCCCCCC--cccchhhhhhhhHHhhcccC
Confidence 3333 223444444 22222222222 333333344443 66665 88899999999999999988
Q ss_pred CCCCCCCcccccccccccccccccccccCCCCCCCCCCccCCCCcCCC-CccCCCCCcccCCCCcccChhhhhccccCCC
Q 039790 709 QPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQND-ISMVPDPPVVFKHPTHLVTPSEILSTAASSS 787 (1395)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1395)
+....+++..+.|| +.++++++...+.|....+.+.|+.+.+...++ .++..+|.- ||||++| ..+.+
T Consensus 650 ~~~~~~~~t~s~d~-vi~~~~~v~~r~~~~~s~e~~sR~k~s~v~~~~e~~~m~s~as----~~hl~SP------~~~~~ 718 (1283)
T KOG1916|consen 650 PHHALGGKTRSADY-VIRQADTVGSRNLDVSSVEELSRSKDSNVTPDDEVSGMRSPAS----PTHLVSP------VSSPE 718 (1283)
T ss_pred CcccCCCCCcchHH-HhhhcchhhcccchhHHHHHhhhcccCCCCCCCCcchhhCccc----ccccCCC------CCCcc
Confidence 88888899999999 889999999988888777777776555444333 555555543 7899999 22333
Q ss_pred CcccccccccccccccccccccCCCCcceeEEEEecccCCccc-cccc-cccchhhhhhhhccccccccccccccccccc
Q 039790 788 ENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGLKN-EFNS-RESHATVTEKKEKSFYSQASDLGIQMARDCC 865 (1395)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1395)
+.+++ +...+.+++++|+ +||...-|+|+|.+++....|+ +..- .+.++-..|.+|..||+|++.+...|+|+|+
T Consensus 719 ~~i~t-qd~~D~~~~~~d~--~ndp~dlE~el~~~ss~~~sqv~~t~p~it~e~cSse~~~~~~~sQa~~~S~~~~rppy 795 (1283)
T KOG1916|consen 719 ASITT-QDGRDRDANIGDV--NNDPRDLEVELKEESSAPDSQVGETNPHITTENCSSEAREPRFCSQASNLSTEMARPPY 795 (1283)
T ss_pred ccccc-ccccccCcccccc--cCCcchhHHHHHhccCCCccccCCCCCcccccccchhhhhhhHHHHhhhhccccCCCCc
Confidence 33443 6677888999886 8999999999999999998888 4444 4445556677799999999999999999885
Q ss_pred CccccccCccccCcccccCCCCCCCCccccccCCCCCcccCcccccccccCCCCccccccccCCCCCCCCCCCCCCCCCC
Q 039790 866 MGTYNVDGIRQASDVEAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISGTSSPSPSPY 945 (1395)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1395)
. ..++...-++..+...+-+++++-.. ..+..+.|..+++ .+ +|+||+|+++.|.+|-++.+.--.
T Consensus 796 ~---~t~g~~~~~~S~~~s~~~~~~a~~~s-~S~g~sak~p~~~---------l~-ak~~k~kg~~~~spgl~~t~s~~~ 861 (1283)
T KOG1916|consen 796 P---LTEGRDIPGASAAYSQPDDAGAELGS-DSRGFSAKLPAPR---------LP-AKGKKQKGKNSQSPGLSSTSSNVA 861 (1283)
T ss_pred c---ccccCCCCCcccccCCccchhhhhcc-ccCCCcccCCCcc---------cc-ccccccCCCcCCCCCccccccchH
Confidence 4 12333333333333344444444333 2444545554433 33 799999999999999998888888
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 039790 946 NSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDAL 1025 (1395)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~ 1025 (1395)
|.+|++++.....+.+..| -++++.++|+.+.||++-|+||++|+..-.. -+||..|++.|||++|.+.|++
T Consensus 862 ~lad~~~~qs~qln~p~ed-~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~-------g~le~~l~~~iEk~lks~~d~~ 933 (1283)
T KOG1916|consen 862 NLADSFNEQSQQLNHPMED-LLPQLLAQQETMAQLMASQKELQRQLSNQLT-------GPLEVALGRMIEKSLKSNADAL 933 (1283)
T ss_pred HHHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHhhHHHH
Confidence 8888988887777656544 5899999999999999999999999887322 2399999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH-hhHHHHHHhhHHHHHHHHHHHHHHHhh-chh
Q 039790 1026 WARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAA-VGPAVARAISPTLEKSISSAIMESFQK-GVG 1103 (1395)
Q Consensus 1026 ~~r~~~~~~~~~~~~~~rq~~ll~~vs~~l~~~~~~~~E~~l~~ei~~-v~P~i~~~~~~~v~~~l~~~v~~~l~~-~v~ 1103 (1395)
|+||+|+.+++|++.|+.+++|++.++++|.+.+++++||+|++||+. |+|+|.+.+.+.+++..++++.+.++. .+.
T Consensus 934 ~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~~tv~P~v~rs~~p~~~q~~~s~itkl~~~eg~~ 1013 (1283)
T KOG1916|consen 934 WARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELAKTVGPCVARSVEPVIEQTVSSAITKLFQREGIG 1013 (1283)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999999999999999999999999999999999999999985 999999999999999999999999998 888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1104 EKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQ 1183 (1395)
Q Consensus 1104 ~~~~~~l~~~v~~~l~~~v~~~i~~~~~~~v~~~i~~~~~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~q~~ 1183 (1395)
+|-+++|.|+++ |+.+|+++|+++|++++. +|++|+++|+++|||+||++|+.||+||++.|++|+.||+.+...
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~--lQ~a~resm~SsviPafEKScqaMF~Qi~daF~~Gi~e~~~q~~s- 1088 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGP--LQEALRESMESSVIPAFEKSCQAMFQQIDDAFQKGIQEHTQQLIS- 1088 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccch--HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-
Confidence 999999999876 999999999999999988 999999999999999999999999999999999999999974422
Q ss_pred HhhccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCCCcccccCCCCCCCCCcc-cccCCCCcHH
Q 039790 1184 FETAHSPMAIALRDAINSATSI--TQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHE-MVEAPLDPTK 1260 (1395)
Q Consensus 1184 ~~~~~~~l~~~L~~~i~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~p~~~~~~-~~e~~~d~~~ 1260 (1395)
.|++. .+++..|+..-|..++....+.+..+..++-++|...+|...+-+ ..++..+|..
T Consensus 1089 -----------------~~~s~~qr~a~nrE~~~~ql~~L~~t~~sa~~~~~~pl~~~l~~~~~~~~~~a~~~a~~~P~~ 1151 (1283)
T KOG1916|consen 1089 -----------------SASSVPQRQALNRELAEAQLNGLALTAASATEQGSNPLVTQLSAGPVGALLEAMRSAAMTPTT 1151 (1283)
T ss_pred -----------------HHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcchHHHHhcchHHHHHHHHHHccCCcHH
Confidence 22221 144555666666666666555445556666655666666543333 4678889999
Q ss_pred HHHHHhhhccHHHHHHHHhccCChHHHHHHHhcCCCCCccccCCCCcchhHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 039790 1261 ELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVA 1340 (1395)
Q Consensus 1261 ~i~~l~~~g~~eeAf~~aL~s~d~~l~~~l~~~~~p~~l~~~~p~~Lsq~vlLsLiqqLs~dL~~~~~~kl~wle~~~~~ 1340 (1395)
+|.|||.+|+|||||+.||+++|++||.|+|+++|...+|.+.||+|+|+|||||||||+||+.+++.+|++||.+|+++
T Consensus 1152 ~i~~ll~~~~~~~af~~al~~~d~~lv~~~~~~~d~~~~~a~~~~~l~q~vllsliqqla~d~s~~~~~k~~~~~~~~~a 1231 (1283)
T KOG1916|consen 1152 EISQLLSEGKYNEAFTQALQASDLSLVSWLCSQVDLRQLFAMNPCPLSQGVLLSLIQQLACDISTDTSLKLRYLTEAVLA 1231 (1283)
T ss_pred HHHHHHhcchHHHHHHHHHHhccchhhhHhhhccCHHHhcCCCCCcchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhHHHHHHHHHHHhhccccCCCCCccccchHHHHHHHHHHHHhhcC
Q 039790 1341 INPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395 (1395)
Q Consensus 1341 l~~~dp~i~~~~p~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1395 (1395)
|||.||+||+|+|+||++||+.|+|++..| |++.+.+|||||+||++|++||
T Consensus 1232 in~sd~~~~~ha~~v~~~~y~~~~~~~~~~---~~~~s~vrlim~~i~s~~~~~k 1283 (1283)
T KOG1916|consen 1232 INPSDPITRVHARPVFEQVYQILHQFRNAP---PSNVSAVRLIMHVINSYLMSLK 1283 (1283)
T ss_pred cCccCchhHhhhhHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999988775 8889999999999999999998
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.03 Aligned_cols=327 Identities=16% Similarity=0.184 Sum_probs=262.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
++-..+.||.+.|.|++|+|+|.+||+|+.|.++|+||+.+. ...+.++|..+|.||+| +|||..|++|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaw-sPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAW-SPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEE-CCCcchhhccccCCeEEEe
Confidence 344567899999999999999999999999999999999997 68899999999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC----CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK----QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~----~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|..+|.. ....+.+|...|++++|.|-. ...+++++.++-+++|+...+..
T Consensus 185 dpktg~~-------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~------------ 239 (480)
T KOG0271|consen 185 DPKTGQQ-------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC------------ 239 (480)
T ss_pred cCCCCCc-------------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE------------
Confidence 9999883 234567889999999998732 23555555444444444443332
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec-------CCC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG-------PHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~-------~~p 434 (1395)
+..+.+|+..|+|+.|--+| +|++||.|++||+|+...|.++++++||.. +|+.++.+++ .+|
T Consensus 240 -------~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 240 -------VRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAH-WVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred -------EEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccch-heeeeeccchhhhhcccccc
Confidence 67788999999999998665 999999999999999999999999999986 9999998722 112
Q ss_pred CCc-------------------------EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 435 QHI-------------------------VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 435 dg~-------------------------~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
.++ .|+++ ++|.++.+|+-... .+++..+.+|...+..
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg-sDd~tlflW~p~~~-----------kkpi~rmtgHq~lVn~----- 372 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSG-SDDFTLFLWNPFKS-----------KKPITRMTGHQALVNH----- 372 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEe-cCCceEEEeccccc-----------ccchhhhhchhhheee-----
Confidence 333 47875 59999999987533 3678888888876543
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEE--EecCCCCcC--cCCCCeEEEEEcC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILS--LTGTTTDAS--PDGEHIVQIYCVQ 564 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils--~~~~~~d~~--~s~dg~V~lWdv~ 564 (1395)
+.||||+++|++++.|..|++|+-.+|+ +++.|.+|. +++- +...+ ..+ .+.|.++++|+++
T Consensus 373 ----V~fSPd~r~IASaSFDkSVkLW~g~tGk--------~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 373 ----VSFSPDGRYIASASFDKSVKLWDGRTGK--------FLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ----EEECCCccEEEEeecccceeeeeCCCcc--------hhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence 9999999999999999999999999886 677777663 3333 33332 223 3678999999999
Q ss_pred CCceee---ecccceEEecCCCCC--eecccCCCceEEEee
Q 039790 565 TQAIQQ---YALDLSQCLPPPLEN--AELEKTDSNATRAFD 600 (1395)
Q Consensus 565 t~~i~~---~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD 600 (1395)
++++.+ .|.+-+.|+-.++|+ ++.++ -++++++|-
T Consensus 440 tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg-kdkv~~lw~ 479 (480)
T KOG0271|consen 440 TKKLKQDLPGHADEVFAVDWSPDGQRVASGG-KDKVLRLWR 479 (480)
T ss_pred eeeecccCCCCCceEEEEEecCCCceeecCC-CceEEEeec
Confidence 999843 467778899999887 55555 458999993
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.98 Aligned_cols=312 Identities=20% Similarity=0.285 Sum_probs=254.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|.+..|++|+.|.++|+||+. ..+++.+.++|..+|.|++|+|||+.|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~----------------------------TeTp~~t~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLD----------------------------TETPLFTCKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccC----------------------------CCCcceeecCCccEEEEEEECCCcchh
Confidence 5667777899999999999999954 126889999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEee----CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 232 CYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFA----EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s----~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
|+|+.||.|++||.++|. ...|.+|+..|++++|.+ +...+|++++.||+|+|||+..+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-------------- 238 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-------------- 238 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--------------
Confidence 999999999999999884 568999999999999942 456799999999999999999887
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
++....+|...|+|++|-.++ ++.+|+.++.+++|....+.. ++.+.||..+|+.++++
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~-------------------~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKL-------------------CRELKGHAHWVNHLALS 297 (480)
T ss_pred EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhH-------------------HHhhcccchheeeeecc
Confidence 677888999999999996554 555555555555554333332 57788999999999887
Q ss_pred cC-----------C------------------------CcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEe
Q 039790 386 QW-----------L------------------------TTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 386 pd-----------g------------------------~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs 429 (1395)
.| + +.+|++|+.|.++.+|+-.. .+++..+.+|.. -|+.|.||
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fS 376 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFS 376 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh-heeeEEEC
Confidence 22 2 23699999999999999665 468999999997 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
||++++++++ .|..|++||.++| +.+.+|.+|-..++. ++|+.|.++|++|+.|
T Consensus 377 ----Pd~r~IASaS-FDkSVkLW~g~tG------------k~lasfRGHv~~VYq---------vawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 377 ----PDGRYIASAS-FDKSVKLWDGRTG------------KFLASFRGHVAAVYQ---------VAWSADSRLLVSGSKD 430 (480)
T ss_pred ----CCccEEEEee-cccceeeeeCCCc------------chhhhhhhccceeEE---------EEeccCccEEEEcCCC
Confidence 9999999966 9999999999999 999999999988765 9999999999999999
Q ss_pred CeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCCCCcC--c--CCCCeEEEEE
Q 039790 510 NAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTTTDAS--P--DGEHIVQIYC 562 (1395)
Q Consensus 510 g~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~d~~--~--s~dg~V~lWd 562 (1395)
.++++|++.+.+. .....++ .-++.++-.. |+- . ..|..++||.
T Consensus 431 sTLKvw~V~tkKl--------~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKL--------KQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeee--------cccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 9999999987431 1222222 3455555444 332 2 3478899984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.90 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=241.9
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--C
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--R 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g 228 (1395)
..+++.++..|+|+|.+|.+++|+.. .+..+.+|.||...|.++.|+|. +
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~----------------------------~~~~~~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVP----------------------------QCNLLQTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecC----------------------------CcceeEEEeccccceeeEEEccCCCc
Confidence 36677788999999999999999932 22567889999999999999996 6
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
..||+|+.||+|++|++++. .+..|.+|..+|..++| .|+|++|+|++.|.+-++||+.++. .+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~--------------El 296 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF-HPSGKFLGTASFDSTWRLWDLETKS--------------EL 296 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeee-cCCCceeeecccccchhhcccccch--------------hh
Confidence 78999999999999999985 68899999999999999 8999999999999999999999987 33
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
-...+|...|.+|+|+++|. ++++|.-+.+-++|+.+.++. +..+.+|.+.|.+|+|+|+
T Consensus 297 L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~-------------------im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC-------------------IMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred HhhcccccccceeEecCCCc-eeeccCccchhheeecccCcE-------------------EEEecccccceeeEeECCC
Confidence 45568899999999999997 555555555555555555543 6788999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
| ..|||||.|++++|||++...++.++.+|.+ -|+.|+|+ | .|.+|++++ .|++++||...+.
T Consensus 357 G-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~----p~~g~fL~Tas-yD~t~kiWs~~~~--------- 420 (459)
T KOG0272|consen 357 G-YHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYS----PQEGYFLVTAS-YDNTVKIWSTRTW--------- 420 (459)
T ss_pred c-eEEeecCCCCcEEEeeecccccceecccccc-hhhheEec----ccCCeEEEEcc-cCcceeeecCCCc---------
Confidence 9 9999999999999999999999999999998 99999999 7 677788766 9999999998766
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+++++.+|.+.+.+ +.+++||.+|++++.|++|++|.
T Consensus 421 ---~~~ksLaGHe~kV~s---------~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 ---SPLKSLAGHEGKVIS---------LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---ccchhhcCCccceEE---------EEeccCCceEEEeccCceeeecc
Confidence 999999999988755 89999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=316.25 Aligned_cols=280 Identities=20% Similarity=0.261 Sum_probs=236.1
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-+....|..+.|+.|++.||+|+.+|.++||+..+. .+.+|+||+..|.++.|++- ++..||||+.||+|++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356788999999999999999999999999999887 58899999999999999665 3779999999999999999976
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
. .+..+.+|...|..++|||+|.++..++.|..-.+||... +.. +.
T Consensus 252 ~--------------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~E-------------------lL 297 (459)
T KOG0272|consen 252 T--------------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSE-------------------LL 297 (459)
T ss_pred c--------------chhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chh-------------------hH
Confidence 5 4556678889999999999998777766666655555533 221 45
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
...||...|.+++|.+|| .+++||+.|..-||||+|+|.++..|.||.. .|.+|.|+ |+|..|++|| .|++++
T Consensus 298 ~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fs----PNGy~lATgs-~Dnt~k 370 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFS----PNGYHLATGS-SDNTCK 370 (459)
T ss_pred hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEeccccc-ceeeEeEC----CCceEEeecC-CCCcEE
Confidence 567899999999999999 8999999999999999999999999999998 99999999 9999999966 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCCCCCccee
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPNPASTRMD 529 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~ 529 (1395)
|||++.. .++.++.+|.+.+.. +.|++ .|.+|++++.|++++||.-.+.. .++
T Consensus 371 VWDLR~r------------~~ly~ipAH~nlVS~---------Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-----~~k 424 (459)
T KOG0272|consen 371 VWDLRMR------------SELYTIPAHSNLVSQ---------VKYSPQEGYFLVTASYDNTVKIWSTRTWS-----PLK 424 (459)
T ss_pred Eeeeccc------------ccceecccccchhhh---------eEecccCCeEEEEcccCcceeeecCCCcc-----cch
Confidence 9999988 889999999987765 88887 89999999999999999976643 233
Q ss_pred eeeeeeccccEEEEecCCCCcC----cCCCCeEEEEE
Q 039790 530 YIAEFTVTMPILSLTGTTTDAS----PDGEHIVQIYC 562 (1395)
Q Consensus 530 ~i~~f~~~~~ils~~~~~~d~~----~s~dg~V~lWd 562 (1395)
.+..+. ..++++++.. ++. .+.|+++++|.
T Consensus 425 sLaGHe--~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHE--GKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCc--cceEEEEecc-CCceEEEeccCceeeecc
Confidence 333333 4567777776 542 46789999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=283.56 Aligned_cols=284 Identities=20% Similarity=0.251 Sum_probs=229.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK 236 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~ 236 (1395)
.+..|++++.|.++-+|++.+- +.. -+.+++.|+||...|..+.+++||+|.++|+.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d------------d~~-----------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD------------DIK-----------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccC------------ccc-----------cCceeeeeeccceEecceEEccCCceEEeccc
Confidence 3478999999999999995421 111 23678899999999999999999999999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-C
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-D 314 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-~ 314 (1395)
||++|+||+.++ ..+.|.||...|.+++| ++|...|+||+.|.+|++|++.... .+....+. .
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~-s~dn~qivSGSrDkTiklwnt~g~c--------------k~t~~~~~~~ 148 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAF-STDNRQIVSGSRDKTIKLWNTLGVC--------------KYTIHEDSHR 148 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEe-cCCCceeecCCCcceeeeeeecccE--------------EEEEecCCCc
Confidence 999999999997 47899999999999999 9999999999999999999998643 23333333 7
Q ss_pred CCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
..|.+++|+|.. +.+++.++.++.+++|+....+. ...+.||.+.++.+++|||| .+++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-------------------~~~~~gh~~~v~t~~vSpDG-slca 208 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-------------------RTTFIGHSGYVNTVTVSPDG-SLCA 208 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-------------------hhccccccccEEEEEECCCC-CEEe
Confidence 889999999995 34455555444444444332221 35567899999999999999 8999
Q ss_pred EEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 394 SASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 394 Sgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
+|+.||.+.+||++.++++.++.+.. .|.+++|+ |+..+|+. + .+..|+|||+.++ .++.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a~~--~v~sl~fs----pnrywL~~-a-t~~sIkIwdl~~~------------~~v~ 268 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEAFD--IVNSLCFS----PNRYWLCA-A-TATSIKIWDLESK------------AVVE 268 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccCCC--eEeeEEec----CCceeEee-c-cCCceEEEeccch------------hhhh
Confidence 99999999999999999999997553 79999999 87766665 4 5778999999988 8887
Q ss_pred EEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 474 TLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 474 tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+|+..............+-.++|+.||..|++|..||.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 776554333222334556689999999999999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-29 Score=294.91 Aligned_cols=427 Identities=16% Similarity=0.208 Sum_probs=306.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEe-------------------CcCCCCCee-eeCceEEEEEeccCCCcc-Cccccccee
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRS-------------------SKVPKGRHL-IGNHSVYDIDVRLDGEVQ-PQLEVTPIT 210 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd-------------------~~sp~Gr~L-~G~~~v~~v~~~~~G~~~-~~~~~~~i~ 210 (1395)
.+.+|.+..|+.....|.+-+.+ .|+|+|+.+ .+...+..++.. +|+.. .-......+
T Consensus 61 ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~-P~~~~~~~~pFvl~r 139 (893)
T KOG0291|consen 61 IALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHA-PGEIKNEFNPFVLHR 139 (893)
T ss_pred EEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEec-CcchhcccCcceEee
Confidence 45566666676666665554443 277899988 554444433332 23322 233456778
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
++.+|.+.|.++.|+-|.++|++|++|.++|||+++.. ....+.+|++.|..+-| ..+...|++.+.||.+.+|..
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF-~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF-GANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEe-ccCcceEEEEecCceEEEEEe
Confidence 99999999999999999999999999999999999875 36688999999999988 888889999999999999998
Q ss_pred CCCCCCCCC-------------------cccccceEEE-EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEE-cCCC
Q 039790 288 TEGPDEEDK-------------------PQILGKIVVA-IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKID-SNRV 346 (1395)
Q Consensus 288 ~tg~~~~~~-------------------~~~~~~~i~~-l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d-~~~~ 346 (1395)
......... ......+... ...+......+++..||+.- .++++|...+++.+. ....
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f 297 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDF 297 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEEEEecCCeeEEEecCCc
Confidence 732110000 0011122222 22333444778888888865 577777766655332 2111
Q ss_pred --------Cc----cccccCCCC-----------CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 347 --------GK----GERFSAEEP-----------LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 347 --------~~----~~~~s~~~~-----------~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
+. ...|+..+. +.+.-|....-+....+|...+++++++||| .++|+|+.||.|||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKV 376 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEE
Confidence 10 011221111 1122233333355567899999999999999 89999999999999
Q ss_pred EeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 404 WDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
||..+|-|+.+|..|.. .|+.+.|+ ..|+.|++++ .||+|+.||+... ++.++|........
T Consensus 377 Wn~~SgfC~vTFteHts-~Vt~v~f~----~~g~~llssS-LDGtVRAwDlkRY------------rNfRTft~P~p~Qf 438 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTS-GVTAVQFT----ARGNVLLSSS-LDGTVRAWDLKRY------------RNFRTFTSPEPIQF 438 (893)
T ss_pred EeccCceEEEEeccCCC-ceEEEEEE----ecCCEEEEee-cCCeEEeeeeccc------------ceeeeecCCCceee
Confidence 99999999999999998 99999999 8999999876 9999999999887 99999987664332
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCe-EEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEE
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNA-IYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQI 560 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~-I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~l 560 (1395)
.+++..+.|.++++|+.|.- |++|++.+|+ .++.+..+.++...++|.... ..+ .+-|.+|++
T Consensus 439 --------scvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 439 --------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRI 504 (893)
T ss_pred --------eEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCCcceeeEEcccc-CeEEeccccceEEE
Confidence 26888899999999998764 9999999986 466777777766666777665 444 356999999
Q ss_pred EEcCCC--ceeeeccc-ceEEecCC--CCCeecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 561 YCVQTQ--AIQQYALD-LSQCLPPP--LENAELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 561 Wdv~t~--~i~~~~~~-~~~cl~~s--~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
|++-.. ......+. -...+.|. .+.++++..| +.+-+||+..+....+++|.+.
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld-gqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLD-GQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEec-ceEEEEEhhhceeeccccchhh
Confidence 998765 33333222 13344455 5558888877 5666999999998888886665
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=315.29 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=221.3
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--------------------------------CceEEec
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--------------------------------ALRSLLR 254 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--------------------------------~~~~~l~ 254 (1395)
.+..++..-...+.|..|+.|+.+||.|..|..|++|.+.. +....+.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 44445555557899999999999999999999999998762 1234688
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
||.++|+.+.| +|+.++|++|+.|++||+|.+.+.. ++..+.+|..+|..+.|+|.| +.|++++
T Consensus 449 GH~GPVyg~sF-sPd~rfLlScSED~svRLWsl~t~s--------------~~V~y~GH~~PVwdV~F~P~G-yYFatas 512 (707)
T KOG0263|consen 449 GHSGPVYGCSF-SPDRRFLLSCSEDSSVRLWSLDTWS--------------CLVIYKGHLAPVWDVQFAPRG-YYFATAS 512 (707)
T ss_pred cCCCceeeeee-cccccceeeccCCcceeeeecccce--------------eEEEecCCCcceeeEEecCCc-eEEEecC
Confidence 99999999999 9999999999999999999999876 677788999999999999997 6667777
Q ss_pred CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE
Q 039790 335 GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV 414 (1395)
Q Consensus 335 ~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t 414 (1395)
++++-++|.... ..+.+++.+|-..|.|+.|+|+. .|+++||.|.+||+||+.+|..++.
T Consensus 513 ~D~tArLWs~d~-------------------~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 513 HDQTARLWSTDH-------------------NKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CCceeeeeeccc-------------------CCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEE
Confidence 777777776443 23478889999999999999998 8999999999999999999999999
Q ss_pred ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEE
Q 039790 415 LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVV 494 (1395)
Q Consensus 415 l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l 494 (1395)
|.||.+ +|.+|+|| |+|++|++++ .||.|+|||+.++ +.+..+.+|.+.+. .+
T Consensus 573 F~GH~~-~V~al~~S----p~Gr~LaSg~-ed~~I~iWDl~~~------------~~v~~l~~Ht~ti~---------Sl 625 (707)
T KOG0263|consen 573 FTGHKG-PVTALAFS----PCGRYLASGD-EDGLIKIWDLANG------------SLVKQLKGHTGTIY---------SL 625 (707)
T ss_pred ecCCCC-ceEEEEEc----CCCceEeecc-cCCcEEEEEcCCC------------cchhhhhcccCcee---------EE
Confidence 999998 99999999 9999999976 9999999999999 89999999976654 49
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 495 ALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 495 ~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|+.||.+||+|+.|++|++||+..
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999876
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=265.81 Aligned_cols=273 Identities=18% Similarity=0.204 Sum_probs=230.4
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+-.|+++|.|.+||+|... .+.+.+++......|..+.+.||+++||+|+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~----------------------------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~- 60 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL----------------------------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN- 60 (311)
T ss_pred ceEEEeccCcceeeeeehh----------------------------cCeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence 4789999999999999943 33567777777789999999999999999987
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
-.||+||++++ .+.+|.+|+..|..+.| ..+|++++|||+||+++|||++...+ +-...+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF-~~dgrWMyTgseDgt~kIWdlR~~~~---------------qR~~~~~ 124 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF-QCDGRWMYTGSEDGTVKIWDLRSLSC---------------QRNYQHN 124 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEE-eecCeEEEecCCCceEEEEeccCccc---------------chhccCC
Confidence 68999999986 58899999999999999 89999999999999999999998542 2223455
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..|++++.+|+..++|++..++.|.+||.....-. ...+..-...|.+++..+|| .+|+.
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~-------------------~~liPe~~~~i~sl~v~~dg-sml~a 184 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT-------------------HELIPEDDTSIQSLTVMPDG-SMLAA 184 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccc-------------------cccCCCCCcceeeEEEcCCC-cEEEE
Confidence 88999999999999999999999999998653211 12233345689999999999 89999
Q ss_pred EeCCCcEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 395 ASLDGTVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+...|+..+|++-.+ .++..|+.|.+ .+..+.|| ||+++|++++ .|.+++||+..+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~C~lS----Pd~k~lat~s-sdktv~iwn~~~~----------- 247 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-HILRCLLS----PDVKYLATCS-SDKTVKIWNTDDF----------- 247 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccc-eEEEEEEC----CCCcEEEeec-CCceEEEEecCCc-----------
Confidence 999999999998654 57778999998 99999999 9999999987 9999999998753
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.+....+++|...+ ..++||.||.||++++.|+.+++|++..++
T Consensus 248 ~kle~~l~gh~rWv---------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 FKLELVLTGHQRWV---------WDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eeeEEEeecCCceE---------EeeeeccCccEEEecCCCCceeecccccCc
Confidence 25556677776544 349999999999999999999999999876
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=267.65 Aligned_cols=295 Identities=15% Similarity=0.174 Sum_probs=232.8
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
..+..+++++|.+.|+++.|++|.++|++++.||.+.|||..+. +.+.+.--..+|..++| +|.|+++++||.|....
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~-sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAY-SPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEE-CCCCCeEEecCcCceeE
Confidence 33556899999999999999999999999999999999999886 56777777889999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
||++.+... ...+...+.+.+|.+++.++.|-.++ .|+.++.+.+...||... +..
T Consensus 123 iy~ls~~d~--------~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~-g~~-------------- 178 (343)
T KOG0286|consen 123 IYPLSTRDA--------EGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET-GQQ-------------- 178 (343)
T ss_pred EEecccccc--------cccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc-ceE--------------
Confidence 999997641 12233456678899999999998754 566655555555665533 321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+..|.||.+.|.+++++|..++.|++|+.|++.+|||+|.+.++++|.+|.. .|++|+|. |+|.-+++ |
T Consensus 179 -----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ff----P~G~afat-G 247 (343)
T KOG0286|consen 179 -----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFF----PSGDAFAT-G 247 (343)
T ss_pred -----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEc----cCCCeeee-c
Confidence 6788999999999999994449999999999999999999999999999998 99999998 99999998 5
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++|+++|+||++.. +.+..|.... . .+....++||..|++|++|..|.++.+||.-.++
T Consensus 248 SDD~tcRlyDlRaD------------~~~a~ys~~~-~------~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-- 306 (343)
T KOG0286|consen 248 SDDATCRLYDLRAD------------QELAVYSHDS-I------ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-- 306 (343)
T ss_pred CCCceeEEEeecCC------------cEEeeeccCc-c------cCCceeEEEcccccEEEeeecCCceeEeeccccc--
Confidence 59999999999988 7777776322 1 1233479999999999999999999999987654
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcC----cCCCCeEEEEE
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDAS----PDGEHIVQIYC 562 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~----~s~dg~V~lWd 562 (1395)
+ +....+|...++.-+...|+. .+-|..++||.
T Consensus 307 ---~---vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 ---R---VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---e---EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 2 222334433333333222322 34567777773
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=285.56 Aligned_cols=246 Identities=20% Similarity=0.255 Sum_probs=213.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
...|++++|+.+|.+||+|+.||.+|||+...+...+|..|+++|.+|.| ..+|+||++++.||++.+||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKW-nk~G~yilS~~vD~ttilwd~~~g~---- 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKW-NKKGTYILSGGVDGTTILWDAHTGT---- 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEE-cCCCCEEEeccCCccEEEEeccCce----
Confidence 46899999999999999999999999999999999999999999999999 8999999999999999999999887
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
..+.+.-|......|.|-.+. .++.++.++.|.++..... .+...+.+|
T Consensus 310 ----------~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~--------------------~P~~t~~GH 358 (524)
T KOG0273|consen 310 ----------VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED--------------------RPVKTFIGH 358 (524)
T ss_pred ----------EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCC--------------------Ccceeeecc
Confidence 445555566665678887665 4667777777777755332 226778889
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC----C-CCcEEEEEecCCCeEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH----P-QHIVLITGGPLNRELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~----p-dg~~L~s~Gs~Dg~I~ 450 (1395)
.+.|.+|.|+|.| .+|+++|.|++++||....+.+...|.+|.. .|+.+.|+|... | ++..+++++ .|++|+
T Consensus 359 ~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~ 435 (524)
T KOG0273|consen 359 HGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVK 435 (524)
T ss_pred cCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEee-cCCeEE
Confidence 9999999999998 8999999999999999999999999999997 999999993211 1 234677766 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+||+..+ .|+.+|..|...++. ++|+++|++|++|+.||.|.+|+..+++
T Consensus 436 lwdv~~g------------v~i~~f~kH~~pVys---------vafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 436 LWDVESG------------VPIHTLMKHQEPVYS---------VAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred EEEccCC------------ceeEeeccCCCceEE---------EEecCCCcEEEecCCCCeeEeccccchh
Confidence 9999998 999999999988765 9999999999999999999999998865
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=267.74 Aligned_cols=274 Identities=15% Similarity=0.153 Sum_probs=231.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.++...|+++|.||.+-+||.+..+ ....+.-...+|..++|+|.|+++
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~Ttn----------------------------K~haipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTN----------------------------KVHAIPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEccccc----------------------------ceeEEecCceeEEEEEECCCCCeE
Confidence 5566777888888888888888855211 112222345789999999999999
Q ss_pred EEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
|+|+-|....||++.+. ..+.+.+|++.+.++.| .. ...|+|++.|.++.+||+++|+
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f-~d-D~~ilT~SGD~TCalWDie~g~------------- 177 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF-LD-DNHILTGSGDMTCALWDIETGQ------------- 177 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEE-cC-CCceEecCCCceEEEEEcccce-------------
Confidence 99999999999999853 35579999999999999 44 5679999999999999999998
Q ss_pred EEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
.+..+.+|...|.++.+.| +++.++.++.++...+||.+.. .. ++.|.+|...|++|.
T Consensus 178 -~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c-------------------~qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 178 -QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QC-------------------VQTFEGHESDINSVR 236 (343)
T ss_pred -EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ce-------------------eEeecccccccceEE
Confidence 6778889999999999999 6666666666777777776443 22 789999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
|.|+| .-|++|+.|++.|+||+|..+.+..|.... ..+|++|+|| -.|++|+++. .|.++.+||.-.+
T Consensus 237 ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS----~SGRlLfagy-~d~~c~vWDtlk~----- 305 (343)
T KOG0286|consen 237 FFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS----KSGRLLFAGY-DDFTCNVWDTLKG----- 305 (343)
T ss_pred EccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc----ccccEEEeee-cCCceeEeecccc-----
Confidence 99999 899999999999999999999888887432 1279999999 8999999976 9999999999888
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+.+..|.+|...+.+ +..++||.-|++|+.|..++||.
T Consensus 306 -------e~vg~L~GHeNRvSc---------l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 -------ERVGVLAGHENRVSC---------LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------ceEEEeeccCCeeEE---------EEECCCCcEEEecchhHheeecC
Confidence 888999999988754 99999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=272.53 Aligned_cols=358 Identities=13% Similarity=0.181 Sum_probs=262.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec---cCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR---GHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~---~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|...|.|+.|+|||.++++.+.||.|.|||=.+|+ +..|. +|.+.|++|+| +||+..|+|++.|.+++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW-sPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW-SPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE-CCCCceEEEecCCceEEEE
Confidence 3556799999999999999999999999999999999985 55666 89999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++++ ..+..-..-+..-..+.|- +..|+++..++.+..++.....
T Consensus 263 dVs~~slv-----------~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~------------------ 311 (603)
T KOG0318|consen 263 DVSTNSLV-----------STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS------------------ 311 (603)
T ss_pred EeeccceE-----------EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC------------------
Confidence 99998732 2222222223334456675 5679999999998888764322
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..+++.||...|++++.++++ .+|.+|+.||.|.-||..+|..-+.. ++|.. .|.+++-+ +...|+++|
T Consensus 312 --~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n-qI~~~~~~-----~~~~~~t~g- 381 (603)
T KOG0318|consen 312 --VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN-QIKGMAAS-----ESGELFTIG- 381 (603)
T ss_pred --hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccc-eEEEEeec-----CCCcEEEEe-
Confidence 267888999999999999999 89999999999999999999766554 68887 99999986 435677777
Q ss_pred CCCeEEEEECCCCC---CCCCCC---------Cccc-c------cEEEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 445 LNRELKIWASAEEE---GWLLPS---------DIES-W------KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~---~~~~~~---------~~~~-~------~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
.|.+|++.++..+. ...... .... . .-+..|..+... ......|-..++++++++..++.
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~-~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV-SSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc-eeeccccccceEEEcCCCCEEEE
Confidence 99999999885431 000000 0010 0 111222222222 22345666778999999999999
Q ss_pred EeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCc--CCCCeEEEEEcCCCcee----eecccceEEe
Q 039790 506 NAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASP--DGEHIVQIYCVQTQAIQ----QYALDLSQCL 579 (1395)
Q Consensus 506 gs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~--s~dg~V~lWdv~t~~i~----~~~~~~~~cl 579 (1395)
|+.|+.|+||.+..+... ....+.++.+....+++.... ..++ +..+.|.+||+++++.. .+|.....|+
T Consensus 461 GG~Dgkvhvysl~g~~l~---ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELK---EEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred ecccceEEEEEecCCccc---ceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 999999999999875421 122333444444444444443 3333 45689999999998763 3567778999
Q ss_pred cCCCCC--eecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 580 PPPLEN--AELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 580 ~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
++++++ ++.++.|.+|+ +|++..-....++.+.|-
T Consensus 537 aWsP~n~~vATGSlDt~Vi-iysv~kP~~~i~iknAH~ 573 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVI-IYSVKKPAKHIIIKNAHL 573 (603)
T ss_pred EeCCCceEEEeccccceEE-EEEccChhhheEeccccc
Confidence 999987 77777887776 999886665555554443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=263.66 Aligned_cols=249 Identities=19% Similarity=0.244 Sum_probs=213.4
Q ss_pred ceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...++.+|.+.|..++..+. ...|++++.|.+|.+|++... ..+.|.||...|.++.. ++||++.++++.||
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~-s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL-SSDGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE-ccCCceEEeccccc
Confidence 45678999999999999886 678899999999999998753 47789999999999999 99999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++|+||+.+++ +.+.+.+|...|.+++|++++..++.+..++.+..|+.....+
T Consensus 86 ~lrlWDl~~g~--------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck------------ 139 (315)
T KOG0279|consen 86 TLRLWDLATGE--------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK------------ 139 (315)
T ss_pred eEEEEEecCCc--------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE------------
Confidence 99999999987 6677788899999999999999888888888888887744221
Q ss_pred CccccccceEEE--cccCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLV--GKHDGEITELSMCQWL-TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l--~~h~~~V~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..+ ..|.+.|+|+.|+|.. .-+|++++.|++||+||+++.+....+.||.+ .++.+++| |||.
T Consensus 140 ---------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vS----pDGs 205 (315)
T KOG0279|consen 140 ---------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVS----PDGS 205 (315)
T ss_pred ---------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEEC----CCCC
Confidence 122 2247899999999984 35999999999999999999999999999998 99999999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.++++| .||.+.+||++.+ +++.++.... . +..++|+|+..+|+.+. +..|+|||+
T Consensus 206 lcasGg-kdg~~~LwdL~~~------------k~lysl~a~~-~---------v~sl~fspnrywL~~at-~~sIkIwdl 261 (315)
T KOG0279|consen 206 LCASGG-KDGEAMLWDLNEG------------KNLYSLEAFD-I---------VNSLCFSPNRYWLCAAT-ATSIKIWDL 261 (315)
T ss_pred EEecCC-CCceEEEEEccCC------------ceeEeccCCC-e---------EeeEEecCCceeEeecc-CCceEEEec
Confidence 999977 9999999999988 8887776433 2 23699999888877665 556999999
Q ss_pred CCCC
Q 039790 518 DYGP 521 (1395)
Q Consensus 518 ~~g~ 521 (1395)
+.+.
T Consensus 262 ~~~~ 265 (315)
T KOG0279|consen 262 ESKA 265 (315)
T ss_pred cchh
Confidence 8854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=276.58 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=233.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..+++++.|++|++||.. .+.....++||.+.|.+++|+..|++|++++.|-
T Consensus 121 ~~v~~as~d~tikv~D~~----------------------------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTE----------------------------TGELERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred eEEEEecCCceEEEEEcc----------------------------chhhhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 678889999999999944 1234567889999999999999999999999999
Q ss_pred eEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 239 NIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 239 ~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
.+++||..+. ++..+.+|...|.+++| -|.|++|+||+.|.+|+.|++.+|- ++..+..|...
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f-~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ew 237 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFF-LPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEW 237 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEE-EecCCeeeecccccceeEEecccce--------------eEEeccCchHh
Confidence 9999999884 68889999999999999 7889999999999999999999987 67788888888
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC---------
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW--------- 387 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd--------- 387 (1395)
+..+..+.|| .|+++++.+..+++|....+.. ...+..|.-.|.|++|-|.
T Consensus 238 vr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~-------------------k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 238 VRMVRVNQDG-TIIASCSNDQTLRVWVVATKQC-------------------KAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred EEEEEecCCe-eEEEecCCCceEEEEEeccchh-------------------hhhhhccccceEEEEecccccCcchhhc
Confidence 8888988888 4777777777777776554432 3556778999999999654
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 388 -----LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 388 -----g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
++.++++++.|++||+||+.+|.|+.++.||.+ +|..++|+ |.|+||+++. +|++|++||+.++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~----p~Gkyi~Sca-DDktlrvwdl~~~----- 366 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFS----PGGKYILSCA-DDKTLRVWDLKNL----- 366 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEc----CCCeEEEEEe-cCCcEEEEEeccc-----
Confidence 225999999999999999999999999999998 99999999 9999999988 9999999999999
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+|..++..|..- +.++.|+.+..++++|+-|.++++|.
T Consensus 367 -------~cmk~~~ah~hf---------vt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 367 -------QCMKTLEAHEHF---------VTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -------eeeeccCCCcce---------eEEEecCCCCceEEeccccceeeeee
Confidence 999999977643 44689999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=300.73 Aligned_cols=264 Identities=21% Similarity=0.290 Sum_probs=213.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCC---CccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDG---EVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G---~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
.-++.++..||.|-.|..|++|++....=+.+-+...+-..++.-.+ ...........+++.||.+.|+++.|+|+.
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR 463 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence 45566778899999999999999653221222111111111000000 011112234456689999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.|++||+|.+.+. ++..++||..+|+++.| +|.|-||||||.|++-++|...... .+
T Consensus 464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F-~P~GyYFatas~D~tArLWs~d~~~--------------Pl 528 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF-APRGYYFATASHDQTARLWSTDHNK--------------PL 528 (707)
T ss_pred cceeeccCCcceeeeecccceeEEEecCCCcceeeEEe-cCCceEEEecCCCceeeeeecccCC--------------ch
Confidence 99999999999999999997 67889999999999999 7999999999999999999998765 67
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+++.+|-..+.|+.|||+..+++.++.+.++..||... +.. +++|.||.+.|.+++|||+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~-------------------VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNS-------------------VRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcE-------------------EEEecCCCCceEEEEEcCC
Confidence 88889999999999999998777665555555555543 322 7889999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
| ++|++|+.||.|+|||+.+|..+..+.+|.+ .|++|.|+ .||..|+++| .|++|++||+...
T Consensus 589 G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS----~dg~vLasgg-~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 589 G-RYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFS----RDGNVLASGG-ADNSVRLWDLTKV 651 (707)
T ss_pred C-ceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEe----cCCCEEEecC-CCCeEEEEEchhh
Confidence 8 9999999999999999999999999999987 99999999 9999999977 9999999999765
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=287.30 Aligned_cols=395 Identities=13% Similarity=0.149 Sum_probs=263.9
Q ss_pred CCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE
Q 039790 145 HQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI 224 (1395)
Q Consensus 145 ~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~ 224 (1395)
+.+|.-...+.+.+..|++|+.|+.|++||+. ...++..|+||.+.|..+.|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~----------------------------~~~~th~fkG~gGvVssl~F 155 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIK----------------------------NGYCTHSFKGHGGVVSSLLF 155 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEee----------------------------CCEEEEEecCCCceEEEEEe
Confidence 34444446666667899999999999999943 12466789999999999999
Q ss_pred ecCCC--EEEEEEcCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 225 AVNRN--YICYGLKLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 225 Spdg~--~LasGs~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
.++.+ .|++|..|++|++||+.++ ++.++..|...|++++| .+|+..++++|.|..|.|||+.+-+.....|...
T Consensus 156 ~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~-~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye 234 (775)
T KOG0319|consen 156 HPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAF-SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE 234 (775)
T ss_pred CCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeee-ccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence 99765 4899999999999999965 57889999999999999 8999999999999999999997655433333111
Q ss_pred c---------------ceEEE------EEEe-------------------------------------------------
Q 039790 301 G---------------KIVVA------IQIL------------------------------------------------- 310 (1395)
Q Consensus 301 ~---------------~~i~~------l~~~------------------------------------------------- 310 (1395)
. .++.. ++.+
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 0 01100 0000
Q ss_pred -----cCCCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 311 -----ADGDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 311 -----~~~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
-+..+.|..++|- |+..+++++.....+..++.. ....+.+.||++.|.+++.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~---------------------~~~c~ii~GH~e~vlSL~~ 373 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP---------------------TSYCQIIPGHTEAVLSLDV 373 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC---------------------CCceEEEeCchhheeeeee
Confidence 0001112222221 111222222222222222111 0115688999999999996
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
..+| .+|+||+.|.++++|.+..+ .++....+|.+ .|.+|+++ ..+.-+++++|.|++|++|++...+..
T Consensus 374 ~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~-svgava~~----~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 374 WSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN-SVGAVAGS----KLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred cccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccc-ccceeeec----ccCccEEEEecCCceEEEecCCCcccc
Confidence 5666 79999999999999977443 46677889998 99999998 555444444569999999999763110
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccE
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPI 540 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~i 540 (1395)
.. .-..+|..+...|...+. +++++|+..+|++|+.|.+.+||+++.+. ....+..++-....
T Consensus 448 ~~---~~~~~~~~t~~aHdKdIN---------~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 448 AF---PIVLTCRYTERAHDKDIN---------CVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHTRGVWC 510 (775)
T ss_pred cc---cceehhhHHHHhhccccc---------ceEecCCCceEEecccccceeeecccCce-----EEEEeeCCccceEE
Confidence 00 000112223345655554 49999999999999999999999998422 23334444433444
Q ss_pred EEEecCCCCcC---cCCCCeEEEEEcCCCce-eeec--ccceE-EecCCCCC-eecccCCCceEEEeecCCCCcceeecc
Q 039790 541 LSLTGTTTDAS---PDGEHIVQIYCVQTQAI-QQYA--LDLSQ-CLPPPLEN-AELEKTDSNATRAFDVANPDGSASLES 612 (1395)
Q Consensus 541 ls~~~~~~d~~---~s~dg~V~lWdv~t~~i-~~~~--~~~~~-cl~~s~d~-l~~~~sd~~v~~iWD~~tg~~~~~l~g 612 (1395)
++|.-. |.+ .++|++|+||.+.+... ..+. ...+. |.....+. +.++++| +.+++|++.|++|..+|++
T Consensus 511 V~Fs~~--dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad-GliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 511 VSFSKN--DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD-GLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccc--cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC-CcEEEEeccchhhhhhhhh
Confidence 555544 332 58999999999999864 3332 22222 22233333 6666666 7777999999999999994
Q ss_pred CCC
Q 039790 613 SHG 615 (1395)
Q Consensus 613 ~~~ 615 (1395)
|..
T Consensus 588 H~D 590 (775)
T KOG0319|consen 588 HND 590 (775)
T ss_pred ccc
Confidence 443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=284.92 Aligned_cols=314 Identities=18% Similarity=0.231 Sum_probs=243.3
Q ss_pred CeEEeecCCCCEEEEeCcC---------CCCCee------eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKV---------PKGRHL------IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQ 223 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~s---------p~Gr~L------~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va 223 (1395)
..+.|+|.+|.++.|+..+ +++.-+ .+...+..+.....-..+..-+.+.+..+-|..+.|.++.
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 5899999999999999432 111111 1111111111110000000123456667788889999988
Q ss_pred E-ecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 224 I-AVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 224 ~-Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
| .++.++||+++..+.+|+|+..+.....+.||++.|.++.. ..+|.+|+||+.|.++++|.+.++.+
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~---------- 399 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCS---------- 399 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcc----------
Confidence 6 56889999999999999999988777799999999999995 46778999999999999999954431
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
...++....+|...+.+++++..+..+|++++.+.++.+|.....+...+ ...+.| ......|+..|+|+
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~--------~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVLTC--------RYTERAHDKDINCV 469 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cceehh--------hHHHHhhcccccce
Confidence 12345566788999999999888888888888888777776544222111 001111 12345699999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
+++|++ .+|||||.|++.+||++..+..+.+|.||.. .|++|.|+ +..+.|++++ .|++||||.+.+.
T Consensus 470 aia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs----~~dq~laT~S-gD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 470 AIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFS----KNDQLLATCS-GDKTVKIWSISTF----- 537 (775)
T ss_pred EecCCC-ceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEec----cccceeEecc-CCceEEEEEeccc-----
Confidence 999998 8999999999999999999999999999997 99999999 8888999865 9999999999998
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|+++|.+|...+.. +.|-.+|..|++++.||.|++|++.++.
T Consensus 538 -------SClkT~eGH~~aVlr---------a~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 538 -------SCLKTFEGHTSAVLR---------ASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred -------eeeeeecCccceeEe---------eeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 999999999988765 7888999999999999999999998853
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=278.29 Aligned_cols=278 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.|.+..|++|+..|.+.+|+.. .+.+ -..+..|...|.++.|+++|.+
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~------------~fnF----------------EtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGT------------SFNF----------------ETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCc------------eeeH----------------HHHhhhhcccceeEEEccCCCE
Confidence 36666777777777777777777711 1111 1235679999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
+++|..+|.|++|+..-..+..+..|. ..|++++| +++...|++|+.||+|+|||....+. -..
T Consensus 153 miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlaf-SpnDskF~t~SdDg~ikiWdf~~~ke--------------e~v 217 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKE--------------ERV 217 (464)
T ss_pred EEEcCCCceEEecccchhhhHHhhHhhhhhhheecc-CCCCceeEEecCCCeEEEEeccCCch--------------hhe
Confidence 999999999999999888777776665 89999999 78889999999999999999998762 234
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|...|.++.|||..+.+++++.++ ++.+|+.+.+.. +..+.+|+..|..+.|++++
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~c-------------------l~tlh~HKntVl~~~f~~n~- 276 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSC-------------------LATLHGHKNTVLAVKFNPNG- 276 (464)
T ss_pred eccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcch-------------------hhhhhhccceEEEEEEcCCC-
Confidence 478899999999999998666555555 666666665553 56777899999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
++|+|+|.|..+++||+|+.+.++++++|.. .|+++.|+ |-..-|+++|+.||.|..|.+...
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~Wh----P~~~~lftsgg~Dgsvvh~~v~~~------------ 339 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWH----PLNESLFTSGGSDGSVVHWVVGLE------------ 339 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccc----cccccceeeccCCCceEEEecccc------------
Confidence 9999999999999999999999999999998 99999998 766666666669999999998744
Q ss_pred cEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 470 KCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 470 ~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.+..+. .|...+ ..++|.|-|.+|++|+.|.++++|.-.
T Consensus 340 ~p~~~i~~AHd~~i---------wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 340 EPLGEIPPAHDGEI---------WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccCCCcccccce---------eeeeccccceeEeecCCCcceeeeccC
Confidence 3333332 333333 359999999999999999999999754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=276.30 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=280.6
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
..++...||.|..||.|++|+..+ ...+.++.||...|+++.|+..|.+|++
T Consensus 73 ~~~d~l~lAVGYaDGsVqif~~~s----------------------------~~~~~tfngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 73 SSDDILLLAVGYADGSVQIFSLES----------------------------EEILITFNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred ccCCcceEEEEecCceEEeeccCC----------------------------CceeeeecccccceEEEEEcccCceEee
Confidence 344557789999999999999331 1345678899999999999999999999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.|+.|.|||+-.. -+..++||.+.|+.+-| ..+.++|+++|.|+.|++||+.+.. |+.+.-+
T Consensus 125 GskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F-~~~~~~lvS~sKDs~iK~WdL~tqh--------------Cf~Thvd 189 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF-LNGDSFLVSVSKDSMIKFWDLETQH--------------CFETHVD 189 (888)
T ss_pred cCCCccEEEEEeccceeeEEeecchHHHhHHhc-cCCCeEEEEeccCceEEEEecccce--------------eeeEEec
Confidence 999999999999776 47789999999999999 7778999999999999999999877 5666666
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC---------------------Cccc---------------------
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV---------------------GKGE--------------------- 350 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~---------------------~~~~--------------------- 350 (1395)
|...++.+++++ ..+++++.+..+.+|..... +++.
T Consensus 190 ~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~ 267 (888)
T KOG0306|consen 190 HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKV 267 (888)
T ss_pred ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhh
Confidence 777777777766 45666666666666655100 0000
Q ss_pred --------------------------cc---------------------------------cCCC--C---------Ccc
Q 039790 351 --------------------------RF---------------------------------SAEE--P---------LKC 360 (1395)
Q Consensus 351 --------------------------~~---------------------------------s~~~--~---------~~~ 360 (1395)
.. .... . ..|
T Consensus 268 ~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~ 347 (888)
T KOG0306|consen 268 IELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVE 347 (888)
T ss_pred hhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceE
Confidence 00 0000 0 000
Q ss_pred --Cccc---c-----ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe---------------
Q 039790 361 --PVDE---L-----INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL--------------- 415 (1395)
Q Consensus 361 --~~~~---~-----~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl--------------- 415 (1395)
.+.. . ......+.||...|.+++||.+. ..++||+ .+.|+||+..+.+|++++
T Consensus 348 ~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 348 WYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDR 425 (888)
T ss_pred EEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCc
Confidence 0000 0 00013467899999999999876 4555554 567999998877776654
Q ss_pred -------------------------cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 416 -------------------------RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 416 -------------------------~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
++|++ .|++++.+ ||+..++++| .|.+|++||...-.. ..+.
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~----pD~~g~vT~s-aDktVkfWdf~l~~~-------~~gt 492 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDG-AIWSISLS----PDNKGFVTGS-ADKTVKFWDFKLVVS-------VPGT 492 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhcccc-ceeeeeec----CCCCceEEec-CCcEEEEEeEEEEec-------cCcc
Confidence 35777 89999998 9999999976 999999999854300 0011
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
..+.+..+.......++.. .++.+||||.+|+.+--|++|+||-+++-+ -++.-|...-|+++++.+. |+
T Consensus 493 ~~k~lsl~~~rtLel~ddv--L~v~~Spdgk~LaVsLLdnTVkVyflDtlK-------FflsLYGHkLPV~smDIS~-DS 562 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDV--LCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-------FFLSLYGHKLPVLSMDISP-DS 562 (888)
T ss_pred cceeeeeccceEEeccccE--EEEEEcCCCcEEEEEeccCeEEEEEeccee-------eeeeecccccceeEEeccC-Cc
Confidence 1111333333322222222 258999999999999999999999998733 2667777778999999887 65
Q ss_pred C----cCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEeecCCCCcceeeccCCCC
Q 039790 551 S----PDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDGSASLESSHGT 616 (1395)
Q Consensus 551 ~----~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~~ 616 (1395)
. .+.|..|+||-++-|... ..|-+...|+-|-++. +...+.| +.++-||....+++..|+|+|+.
T Consensus 563 klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD-~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD-GKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc-ceEEeechhhhhhheeeccchhe
Confidence 3 578999999999999442 1234556787776654 4444545 66669999999999999988884
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=268.75 Aligned_cols=274 Identities=20% Similarity=0.259 Sum_probs=232.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+...+..||+|+.||.+|+|+. .+..+.+|..|.+.|.++.|+.+|+||
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~-----------------------------~G~l~~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNK-----------------------------DGNLISTLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEec-----------------------------CchhhhhhhccCCceEEEEEcCCCCEE
Confidence 677777889999999999999982 235667788899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||++.|||..++. ...|.-|..+-.+|.| .+...|++++.||.|+|+.+.... ....+
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW--~~~~~F~ts~td~~i~V~kv~~~~--------------P~~t~ 355 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW--QSNDEFATSSTDGCIHVCKVGEDR--------------PVKTF 355 (524)
T ss_pred EeccCCccEEEEeccCceEEEeeeeccCCccceEE--ecCceEeecCCCceEEEEEecCCC--------------cceee
Confidence 999999999999999985 5677778887789999 345679999999999999998765 44555
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT- 389 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~- 389 (1395)
.+|.+.|..+.|+|.+. +|++++++..+++|....... ...+.+|...|+.+.|+|+|+
T Consensus 356 ~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-------------------~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-------------------VHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred ecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcc-------------------hhhhhhhccceeeEeecCCCCc
Confidence 66999999999999996 666666666666665433221 455778999999999999863
Q ss_pred -------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 390 -------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 390 -------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
..|++++.|++|++||+..|.++++|..|.. +|++|+|+ |+|+|+++ |+.||.|.||++.++
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS----~~g~ylAs-Gs~dg~V~iws~~~~----- 484 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFS----PNGRYLAS-GSLDGCVHIWSTKTG----- 484 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEec----CCCcEEEe-cCCCCeeEeccccch-----
Confidence 5899999999999999999999999999997 99999999 99999999 559999999999998
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.++.+.+.... ..++|+.+|.+|.++..|+.+++.|+.
T Consensus 485 -------~l~~s~~~~~~I----------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 -------KLVKSYQGTGGI----------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -------heeEeecCCCeE----------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 888888765542 249999999999999999999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=268.13 Aligned_cols=292 Identities=21% Similarity=0.255 Sum_probs=240.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|...|+.+-|.|+...+++++.|++|++||..++. ...++||++.|.+|+| ...|.+|++|+.|-.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~-~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISF-DASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEE-ecCccEEEecCCccchhhe
Confidence 3445677899999999999999999999999999999999985 7789999999999999 8889999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|..+-. .+++...+|+..+.+++|-|.|.+++.++.+..|..|+..... |
T Consensus 178 d~~~~~-------------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~------------c----- 227 (406)
T KOG0295|consen 178 DFDTFF-------------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY------------C----- 227 (406)
T ss_pred eHHHHH-------------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce------------e-----
Confidence 998632 2456667888999999999999999999999999888764422 1
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-C---------C
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-P---------Q 435 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-p---------d 435 (1395)
+..+.+|..+|..+..+.|| .++++|+.|.+|++|-+.++.|...++.|.- +|-+++|.|... | +
T Consensus 228 ---v~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 228 ---VKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred ---EEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCC
Confidence 68899999999999999999 8999999999999999999999999999986 999999973221 1 1
Q ss_pred -CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 436 -HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 436 -g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
++++.+ |+.|++||+||+.++ .|+.++.+|...+.. ++|+|.|+||+++.+|+++++
T Consensus 303 ~~~~l~s-~SrDktIk~wdv~tg------------~cL~tL~ghdnwVr~---------~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 303 GGQVLGS-GSRDKTIKIWDVSTG------------MCLFTLVGHDNWVRG---------VAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred CccEEEe-ecccceEEEEeccCC------------eEEEEEecccceeee---------eEEcCCCeEEEEEecCCcEEE
Confidence 245655 669999999999999 999999999987754 999999999999999999999
Q ss_pred EEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEE
Q 039790 515 IHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYC 562 (1395)
Q Consensus 515 Wdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWd 562 (1395)
||+..+. +++.+..+..-...+.|.-.. ... ++-|..+++|.
T Consensus 361 wdl~~~~-----cmk~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 361 WDLKNLQ-----CMKTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccce-----eeeccCCCcceeEEEecCCCC-ceEEeccccceeeeee
Confidence 9998743 555554443333333333332 222 23467788884
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=271.31 Aligned_cols=237 Identities=16% Similarity=0.278 Sum_probs=198.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
....|+|+.+ |...+++|..|.+|+|||.++- +...+.||++.|.|+.| +...|++|+.|.+|+|||+.+|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCc--
Confidence 3467888776 5567999999999999999885 68899999999999999 67799999999999999999998
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
++.++-+|-..|..+.|+. ++++.++.+..+.+|+...... ..| .+++.
T Consensus 269 ------------~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~---------it~--------rrVLv 317 (499)
T KOG0281|consen 269 ------------PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD---------ITL--------RRVLV 317 (499)
T ss_pred ------------hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH---------HHH--------HHHHh
Confidence 4555667777777777753 4677777777777777644321 111 46678
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
||...|+.+.|+. ++++++|.|.+|++|++.++.+++++.||.. .|-|+.|. |+++++ ||.|.+|+|||
T Consensus 318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQYr------~rlvVS-GSSDntIRlwd 386 (499)
T KOG0281|consen 318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR------DRLVVS-GSSDNTIRLWD 386 (499)
T ss_pred hhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccc-cceehhcc------CeEEEe-cCCCceEEEEe
Confidence 9999999999964 7999999999999999999999999999997 89999985 666666 66999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
+..| .|++.+++|...+.+ +.| |...|++|+.||+|++||+..+..+
T Consensus 387 i~~G------------~cLRvLeGHEeLvRc---------iRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 387 IECG------------ACLRVLEGHEELVRC---------IRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccc------------HHHHHHhchHHhhhh---------eee--cCceeeeccccceEEEEecccccCC
Confidence 9999 999999999987654 555 5788999999999999999987543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-27 Score=255.55 Aligned_cols=337 Identities=15% Similarity=0.153 Sum_probs=261.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+.+|..|.+.|.+++++|+.+++|+|+.|..-.||++.++. ...+.+|++.|+++.| +.+|.+||||+.+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F-shdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF-SHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE-ccCceEEEecCCCccEEEE
Confidence 4567899999999999999999999999999999999999985 7789999999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
+..++... ..+. ..-..+.-++|||.+..+++++.++.+..|.....+
T Consensus 134 ~~stg~~~-------------~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------ 181 (399)
T KOG0296|consen 134 KVSTGGEQ-------------WKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------ 181 (399)
T ss_pred EcccCceE-------------EEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcc------------------
Confidence 99998721 1111 233455678999988777777777777777654321
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..+++.||...+++=.|.|+| ++++++..||+|++||..+|.+++.+.+..+....++.++ ..+..++. |+.
T Consensus 182 --~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~----~~~~~~~~-g~~ 253 (399)
T KOG0296|consen 182 --LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN----LAGSTLTK-GNS 253 (399)
T ss_pred --eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc----cccceeEe-ccC
Confidence 168889999999999999998 8999999999999999999999999986655578899997 66766666 559
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc--cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL--EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~--~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++.+++-+..++ +.+..+.+........ +..--+..+.++..=.+.++|+.||+|.|||+..-
T Consensus 254 e~~~~~~~~~sg------------KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--- 318 (399)
T KOG0296|consen 254 EGVACGVNNGSG------------KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--- 318 (399)
T ss_pred CccEEEEccccc------------eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc---
Confidence 999999998888 6666665311100000 00011224556666778899999999999999763
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee-ee--cccceEEecCCCCC-eecccCCCceEEEe
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ-QY--ALDLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~-~~--~~~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
.++.+.++......+.|.++.+-..+..+|.|+.||..+|.+. .| |.....|++.+++. +.+..+|+++.++|
T Consensus 319 ---~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 319 ---TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred ---hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 4556666666666666666431112467999999999999763 34 44557898888865 77788888999999
Q ss_pred ecC
Q 039790 600 DVA 602 (1395)
Q Consensus 600 D~~ 602 (1395)
++.
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=274.31 Aligned_cols=305 Identities=19% Similarity=0.237 Sum_probs=234.4
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccCc-------------ccccceeeeeCCCCCEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQPQ-------------LEVTPITKYISDPGLVLG 221 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~~-------------~~~~~i~~l~~h~~~V~~ 221 (1395)
..|+++-..|...++. -|+-.++ .++..|-.+.+...|..++- ....-+.+..+|...+.|
T Consensus 278 ~~lvvgFssG~f~Lye--lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYE--LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred eEEEEEecCCeeEEEe--cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 7888888899888887 3343333 34455555555544444330 112455677899999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
++++|||.+||+|+.||.|+|||...| |..+|..|+..|+.+.| ...|+.+++.+.||+||.||+....
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYr--------- 425 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF-TARGNVLLSSSLDGTVRAWDLKRYR--------- 425 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE-EecCCEEEEeecCCeEEeeeecccc---------
Confidence 999999999999999999999999998 89999999999999999 8999999999999999999999877
Q ss_pred cceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
.++++.. ......|++..|.|..+++++.+.--+.+|....|+. +..+.||.++|
T Consensus 426 -----NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-------------------lDiLsGHEgPV 481 (893)
T KOG0291|consen 426 -----NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-------------------LDILSGHEGPV 481 (893)
T ss_pred -----eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-------------------eehhcCCCCcc
Confidence 3333333 2234457888898987777777777777777666653 56788999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.+++|+|++ ..|++||+|++||+||+-.. ..+.++.... .+..|+|. |||+.|+++. .||.|.+||...+
T Consensus 482 s~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s--dvl~vsfr----PdG~elaVaT-ldgqItf~d~~~~- 552 (893)
T KOG0291|consen 482 SGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEIRS--DVLAVSFR----PDGKELAVAT-LDGQITFFDIKEA- 552 (893)
T ss_pred eeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEeecc--ceeEEEEc----CCCCeEEEEE-ecceEEEEEhhhc-
Confidence 999999999 89999999999999998654 3455665443 69999999 9999999987 9999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCc---------cccc---ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSS---------AELR---LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~---------~i~~---~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..+.++++... .+.. ....+| ..++++.||.+|++|+..+.|++||+..+
T Consensus 553 -----------~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F-tti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 553 -----------VQVGSIDGRKDLSGGRKETDRITAENSAKGKTF-TTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred -----------eeeccccchhhccccccccceeehhhcccCCce-EEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 22222221111 0000 011222 36999999999999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=244.73 Aligned_cols=279 Identities=19% Similarity=0.258 Sum_probs=220.6
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..|+++|.|+.||+|+...++ -|.+..- .-.+|...|..++|+|.|+|||+|+.|
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~---------s~~ck~v---------------ld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGD---------SWTCKTV---------------LDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ceEEEeecCCceEEEEecCCCC---------cEEEEEe---------------ccccchheeeeeeecCCCcEEEEeecc
Confidence 4589999999999999944211 1222111 113699999999999999999999999
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
+++.||.-..+ ++..+.||...|.+++| +.+|++||+|+.|+.|-||.+..+. -..++.++..|.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw-s~sG~~LATCSRDKSVWiWe~dedd-----------Efec~aVL~~Ht 150 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAW-SASGNYLATCSRDKSVWIWEIDEDD-----------EFECIAVLQEHT 150 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEE-cCCCCEEEEeeCCCeEEEEEecCCC-----------cEEEEeeecccc
Confidence 99999998876 67899999999999999 9999999999999999999999655 345788889999
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..|..+.|||....|+.++.++.|..|+... ++.+.| +..+.+|...|++++|++.| .+|++
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---------dddW~c--------~~tl~g~~~TVW~~~F~~~G-~rl~s 212 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---------DDDWEC--------VQTLDGHENTVWSLAFDNIG-SRLVS 212 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecC---------CCCeeE--------EEEecCccceEEEEEecCCC-ceEEE
Confidence 9999999999999888888899998887642 223344 78899999999999999998 89999
Q ss_pred EeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 395 ASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
++.|++|+||-..+. +. -|++ .++.|.|. ...|+++| .|+.|+||.-... .+...++.+.
T Consensus 213 ~sdD~tv~Iw~~~~~-----~~~~~sr-~~Y~v~W~------~~~IaS~g-gD~~i~lf~~s~~------~d~p~~~l~~ 273 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-----LSGMHSR-ALYDVPWD------NGVIASGG-GDDAIRLFKESDS------PDEPSWNLLA 273 (312)
T ss_pred ecCCcceEeeeeccC-----cchhccc-ceEeeeec------ccceEecc-CCCEEEEEEecCC------CCCchHHHHH
Confidence 999999999986532 22 3555 89999994 45778877 9999999976543 1123334433
Q ss_pred EEe-ccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcC
Q 039790 474 TLE-LKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 474 tl~-~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~ 518 (1395)
... .|...+ .++.|.|. ..+|++|++||.|++|.+.
T Consensus 274 ~~~~aHe~dV---------NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 KKEGAHEVDV---------NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhhccccccc---------ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 222 233222 25888884 7899999999999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=268.21 Aligned_cols=300 Identities=18% Similarity=0.247 Sum_probs=229.0
Q ss_pred CCchhhHhhhccCCCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceee
Q 039790 132 SGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITK 211 (1395)
Q Consensus 132 ~~g~~l~~ll~~~~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~ 211 (1395)
.-|..++..++.+.-..-.+...--+...+++|..|++|++||.. ...+++.
T Consensus 181 r~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n----------------------------~~~c~~~ 232 (499)
T KOG0281|consen 181 RCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN----------------------------SLECLKI 232 (499)
T ss_pred hccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccc----------------------------cHHHHHh
Confidence 344444444443322222223333344788999999999999933 1245678
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+.||.+.|.|+.| +.+.|++|+.|.+|+|||+++| ++.++.+|.+.|..+.| +..++++|+.|.+|.|||+...
T Consensus 233 L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 233 LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE---eCCEEEEecCCceeEEEeccCc
Confidence 8999999999887 4569999999999999999998 47889999999999999 4679999999999999999876
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. +.+..+..+|...|+.+.|+.. ++++++++..++.|....... ++
T Consensus 308 s~-----------it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~ef-------------------vR 354 (499)
T KOG0281|consen 308 TD-----------ITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEF-------------------VR 354 (499)
T ss_pred hH-----------HHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceee-------------------eh
Confidence 51 2233455678888888888653 555566555555555444332 67
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
++.+|...|-|+.+. | +++++||.|.+||+||+..|.|++.+.||.. -|.++.|. .+.+++|+ .||+|+
T Consensus 355 tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd------~krIVSGa-YDGkik 423 (499)
T KOG0281|consen 355 TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD------NKRIVSGA-YDGKIK 423 (499)
T ss_pred hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeec------Cceeeecc-ccceEE
Confidence 888999999999875 4 8999999999999999999999999999997 99999994 67888877 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
|||+..+..-. .....-|+.++.-|++.+ ..+.-|...|++++.|.+|.|||+..+..
T Consensus 424 vWdl~aaldpr---a~~~~~Cl~~lv~hsgRV-----------FrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 424 VWDLQAALDPR---APASTLCLRTLVEHSGRV-----------FRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEecccccCCc---ccccchHHHhhhhcccee-----------EEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99998873211 112235777777777664 33445778999999999999999987654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=243.71 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=216.4
Q ss_pred CCCEEEEeCcCCCCCee--eeCc--eEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEE
Q 039790 167 APPVRLRSSKVPKGRHL--IGNH--SVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRI 242 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L--~G~~--~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrI 242 (1395)
|+.|.-.. ..|+++.| +|.. ++||+....+ .++.+|.+|.+.|+.|.|..||+++++|+.||+++|
T Consensus 40 dsqVNrLe-iTpdk~~LAaa~~qhvRlyD~~S~np---------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 40 DSQVNRLE-ITPDKKDLAAAGNQHVRLYDLNSNNP---------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred ccceeeEE-EcCCcchhhhccCCeeEEEEccCCCC---------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence 66676666 56788877 4433 5566655432 589999999999999999999999999999999999
Q ss_pred EECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE
Q 039790 243 LNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW 322 (1395)
Q Consensus 243 Wd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~ 322 (1395)
||++.-.......|..+|+++.. .++...|++|..+|.|+|||+.+..+.+ .+....+..+.++..
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvl-hpnQteLis~dqsg~irvWDl~~~~c~~-------------~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVL-HPNQTELISGDQSGNIRVWDLGENSCTH-------------ELIPEDDTSIQSLTV 175 (311)
T ss_pred EeccCcccchhccCCCCcceEEe-cCCcceEEeecCCCcEEEEEccCCcccc-------------ccCCCCCcceeeEEE
Confidence 99998666666678899999999 7888889999999999999999876322 334455567889999
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
.++|..++++...|..++|+...... ...+.++..+..|.+.+..+.||||+ ++||++|.|.+++
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~--------------~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~ 240 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQT--------------ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVK 240 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCc--------------cccceEhhheecccceEEEEEECCCC-cEEEeecCCceEE
Confidence 99999888888888999998755211 12334466788999999999999998 8999999999999
Q ss_pred EEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 403 IWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 403 IWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
||++.+. +.-..+++|.. +++.++|| .||+||++++ .|+++++||+..+ +.++.+.+|...
T Consensus 241 iwn~~~~~kle~~l~gh~r-WvWdc~FS----~dg~YlvTas-sd~~~rlW~~~~~------------k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQR-WVWDCAFS----ADGEYLVTAS-SDHTARLWDLSAG------------KEVRQYQGHHKA 302 (311)
T ss_pred EEecCCceeeEEEeecCCc-eEEeeeec----cCccEEEecC-CCCceeecccccC------------ceeeecCCcccc
Confidence 9999887 66678899997 99999999 9999999977 8999999999998 888999998865
Q ss_pred c
Q 039790 482 E 482 (1395)
Q Consensus 482 i 482 (1395)
.
T Consensus 303 ~ 303 (311)
T KOG0315|consen 303 A 303 (311)
T ss_pred c
Confidence 4
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=249.91 Aligned_cols=259 Identities=14% Similarity=0.186 Sum_probs=218.6
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
..++..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++...+ ...+++|++.|..+.| ..|++.|++||.|.+|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~-~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHG-MRDGSHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeee-ccCCCEEEEecCCceEE
Confidence 35677788999999999999999999999999999999988764 5688899999999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
.||+++|+ +++....|...+..++-+.-|..++.++.+++.+++|+.+....
T Consensus 116 ~wD~~tG~--------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-------------- 167 (338)
T KOG0265|consen 116 GWDAETGK--------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-------------- 167 (338)
T ss_pred EEecccce--------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--------------
Confidence 99999998 45556677788888887777888999998887777766543221
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
++++. ....++++.|...+ ..+.+|+-|+.|++||++....++++.||.+ .|+.+..+ ++|.++++-+
T Consensus 168 -----~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls----~~gs~llsns 235 (338)
T KOG0265|consen 168 -----IKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLS----RYGSFLLSNS 235 (338)
T ss_pred -----hhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccC-ceeeEEec----cCCCcccccc
Confidence 22232 45679999999888 7999999999999999999999999999998 99999999 9999999966
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|.+|++||++-. ....+|+..|.+|...... . .-.++|+|++..+.+|+.|..+|+||..+
T Consensus 236 -Md~tvrvwd~rp~--------~p~~R~v~if~g~~hnfek---n--lL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 236 -MDNTVRVWDVRPF--------APSQRCVKIFQGHIHNFEK---N--LLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred -ccceEEEEEeccc--------CCCCceEEEeecchhhhhh---h--cceeeccCCCCccccccccceEEEeeccc
Confidence 9999999999754 1334789999887654211 1 12488999999999999999999999765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=257.65 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=216.3
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
+.-+.+.+|.++|.|+++.|...+|++|+.|++|+|||+.+|. ..++.||-..|..++| +....||.+|+.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vav-S~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAV-SKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeee-cccCceEEEecCCCeeEEE
Confidence 4456778999999999999999999999999999999999995 6689999999999999 8888899999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+...+ .++-+.+|-..|+++..+|.-..++.+|.+..+.+||.+...
T Consensus 221 DLe~nk--------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------------ 268 (460)
T KOG0285|consen 221 DLEYNK--------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------------ 268 (460)
T ss_pred echhhh--------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------------
Confidence 999887 455667888999999999999877777777777777765432
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+.||...|.++.+.|-+ -.+++||.|++||+||++.|+-..++..|+. .|.+++.. |....+++++ .
T Consensus 269 --~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lh----P~e~~fASas-~ 339 (460)
T KOG0285|consen 269 --SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLH----PKENLFASAS-P 339 (460)
T ss_pred --eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecC----CchhhhhccC-C
Confidence 278899999999999999987 5899999999999999999999999999987 99999997 8887788755 4
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..|+-|++..+ ..++.+.+|...+.. +....|| ++++|+++|.|.+||...|.+
T Consensus 340 -dnik~w~~p~g------------~f~~nlsgh~~iint---------l~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 340 -DNIKQWKLPEG------------EFLQNLSGHNAIINT---------LSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred -ccceeccCCcc------------chhhccccccceeee---------eeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 46999999888 777778888766543 6666665 567899999999999999764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=284.05 Aligned_cols=249 Identities=24% Similarity=0.361 Sum_probs=211.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|...|.|+.|+++|++|++++.|+.|++|+..++. ...+.+|...|.+++| ++++.++++|+.|++|+|||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~f-s~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAF-SPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEE-CCCCcEEEEecCCceEEEeeccCCC
Confidence 47889999999999999999999999999996654 5667899999999999 9999999999999999999994432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+++++.+|...+++++|+|+++ ++++|+++..+++|+.+.+.. ...
T Consensus 237 -------------~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~-------------------~~~ 283 (456)
T KOG0266|consen 237 -------------RNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGEC-------------------VRK 283 (456)
T ss_pred -------------eEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeE-------------------EEe
Confidence 26788889999999999999995 555555555444444443332 678
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCC-CeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGH-PVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~-~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+.+|.+.|++++|+++| ++|++++.||.|+|||+.++. ++..+.++... .++++.|+ |++.+|++++ .|+.
T Consensus 284 l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs----p~~~~ll~~~-~d~~ 357 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS----PNGKYLLSAS-LDRT 357 (456)
T ss_pred eeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC----CCCcEEEEec-CCCe
Confidence 89999999999999999 899999999999999999999 78899988874 59999999 9999999977 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++||+..+ .++..+.+|.....+ ++ ...++++|.++++|+.|+.|++|++..+.
T Consensus 358 ~~~w~l~~~------------~~~~~~~~~~~~~~~----~~--~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 358 LKLWDLRSG------------KSVGTYTGHSNLVRC----IF--SPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EEEEEccCC------------cceeeecccCCccee----Ee--cccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 999999988 999999998865211 22 24447899999999999999999998743
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=241.06 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=220.2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+....+.+|.+.|..+.|+.||+|.++++.|.+||+|+...| +++++.+|...|.+++. +.|...|++|+.|+.|.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~-s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAAL-SSDNSKFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccc-cccccccccCCCCceEEE
Confidence 3456678899999999999999999999999999999999887 68899999999999999 888999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+|+ .++.+.+|...|+.+.|+.....++.++.+..+..||-+..
T Consensus 86 wDV~TGk--------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~------------------ 133 (307)
T KOG0316|consen 86 WDVNTGK--------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR------------------ 133 (307)
T ss_pred EEcccCe--------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC------------------
Confidence 9999998 66778899999999999998876666677777777765432
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..++++++....+.|.++.... ..|++||.||++|.||+|.|.....+-+| +|++++|+ +|++.+++++
T Consensus 134 s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s----~d~nc~La~~- 202 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFS----KDGNCSLASS- 202 (307)
T ss_pred CCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEec----CCCCEEEEee-
Confidence 1234777887888999999864 68999999999999999999887777666 89999999 9999998865
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|++|++.|-.+| +.++.+++|....+.. .+++.....++++|+.||.||+||+..+.
T Consensus 203 l~stlrLlDk~tG------------klL~sYkGhkn~eykl-------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 203 LDSTLRLLDKETG------------KLLKSYKGHKNMEYKL-------DCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ccceeeecccchh------------HHHHHhcccccceeee-------eeeecccceeEEeccCCceEEEEEeccce
Confidence 9999999999998 9999999998776542 36777888899999999999999998643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=271.62 Aligned_cols=251 Identities=20% Similarity=0.273 Sum_probs=220.2
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+++..|...|.++.|+|...++.++..+|.|.|||.++. .+..|.-..-+|.+..| -...+++++|+.|..||||+..
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kf-iaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKF-IARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhhee-eeccceEEEecCCceEEEEecc
Confidence 455668899999999999999999999999999999997 46777777889999999 7778999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ .+..+..|.+.+.+++.||..++++.++.+-.|..| +. ++.+.|
T Consensus 86 t~e--------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW-~w----------e~~wa~-------- 132 (794)
T KOG0276|consen 86 TGE--------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLW-DW----------ENEWAC-------- 132 (794)
T ss_pred cce--------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEe-ec----------cCceee--------
Confidence 987 677888999999999999999877665555444444 32 223334
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
.++|.||...|.+++|.|.+.+.||++|.|++||||.+.+..+..+++||.. .|+||+|-+. +|..+|++++ +|.+
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~--gdkpylIsga-DD~t 208 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTG--GDKPYLISGA-DDLT 208 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccC--CCcceEEecC-CCce
Confidence 7899999999999999999989999999999999999999999999999997 9999999833 5667999966 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||..+. .|++++++|...+. .++|.|.=.+|++|+.||+|+||+-.+
T Consensus 209 iKvWDyQtk------------~CV~TLeGHt~Nvs---------~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 209 IKVWDYQTK------------SCVQTLEGHTNNVS---------FVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEeecchH------------HHHHHhhcccccce---------EEEecCCCcEEEEecCCccEEEecCcc
Confidence 999999998 99999999998764 489999999999999999999999765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=235.89 Aligned_cols=249 Identities=17% Similarity=0.224 Sum_probs=207.1
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC----ceEEe-ccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA----LRSLL-RGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~----~~~~l-~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
..++.+.+|.+.|..++|+|- |..||+|+.|..||||+...+ ++..+ .+|+..|.+++| +|.|++|++|+.|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-sp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-SPHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee-cCCCcEEEEeeccc
Confidence 456788899999999999998 999999999999999999853 33333 479999999999 99999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++.||.-..+. ..++.++.+|+..|.+++|+.+|.+|..++.++.+.+|..... +.+.|
T Consensus 84 t~~Iw~k~~~e------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---------dEfec 142 (312)
T KOG0645|consen 84 TVVIWKKEDGE------------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED---------DEFEC 142 (312)
T ss_pred eEEEeecCCCc------------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---------CcEEE
Confidence 99999987665 3468889999999999999999998888888888888876422 22233
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC---CCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR---KSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~---sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..++..|...|..+.|+|.. .+|+++|+|.+||+|+-. ...|+.+|.+|.+ .|.+++|. +.|.
T Consensus 143 --------~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~----~~G~ 208 (312)
T KOG0645|consen 143 --------IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFD----NIGS 208 (312)
T ss_pred --------EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEec----CCCc
Confidence 78899999999999999986 799999999999999866 3589999999998 99999998 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.|+++. .|++|+||-..+. +. .|...++ .+.|. ...|++++.|+.|++|.
T Consensus 209 rl~s~s-dD~tv~Iw~~~~~-----------------~~~~~sr~~Y---------~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 209 RLVSCS-DDGTVSIWRLYTD-----------------LSGMHSRALY---------DVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEEEec-CCcceEeeeeccC-----------------cchhcccceE---------eeeec--ccceEeccCCCEEEEEE
Confidence 999965 9999999986543 22 2222222 25554 56789999999999998
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
-..+
T Consensus 260 ~s~~ 263 (312)
T KOG0645|consen 260 ESDS 263 (312)
T ss_pred ecCC
Confidence 7653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=252.26 Aligned_cols=249 Identities=24% Similarity=0.343 Sum_probs=207.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+..+.+|.+.|.++.|++++++|++|+.||.|++|++.++ ....+..|...+..+.| .+++++|++++.||.|++||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA-SADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEE-CCCCCEEEEEcCCCeEEEEEc
Confidence 3467789999999999999999999999999999999887 46778889999999999 788899999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
..++ .+..+..+...+.++.|++++..+++++.++.+.+|+.....
T Consensus 81 ~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------- 126 (289)
T cd00200 81 ETGE--------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-------------------- 126 (289)
T ss_pred Cccc--------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--------------------
Confidence 9765 233344566788999999996544444447778877764211
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
....+..|...|.+++|++++ .++++++.||.|++||++.++++..+..|.+ .|.++.|+ +++..+++++ .|+
T Consensus 127 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~~~l~~~~-~~~ 199 (289)
T cd00200 127 CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFS----PDGEKLLSSS-SDG 199 (289)
T ss_pred EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEEC----CCcCEEEEec-CCC
Confidence 144556789999999999987 7888888899999999999999999999987 89999999 9998998877 799
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.|++||+..+ +.+..+..|...+. .+.|++++.++++++.|+.|++|++..+
T Consensus 200 ~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 200 TIKLWDLSTG------------KCLGTLRGHENGVN---------SVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cEEEEECCCC------------ceecchhhcCCceE---------EEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 9999999887 77777766654432 4889999999999988999999999764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=267.57 Aligned_cols=324 Identities=17% Similarity=0.253 Sum_probs=252.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+++.|..+.++++=..|.|++||.. -++++.+|..|.+.|.+++|++.+.++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYR----------------------------M~tli~rFdeHdGpVRgv~FH~~qplF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYR----------------------------MGTLIDRFDEHDGPVRGVDFHPTQPLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhh----------------------------hhhHHhhhhccCCccceeeecCCCCeE
Confidence 3445555899999999999999922 126778899999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.|-.|+||+..+. ++.++.||-+.|..+.| ++.-.+|+|+|.|.||+||+..+++ ++.+.
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~F-HheyPWIlSASDDQTIrIWNwqsr~--------------~iavl 131 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFF-HHEYPWILSASDDQTIRIWNWQSRK--------------CIAVL 131 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeec-cCCCceEEEccCCCeEEEEeccCCc--------------eEEEE
Confidence 99999999999999986 78899999999999999 6778899999999999999999998 78888
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc--CCCCCc-----cCccccccc--eEEEcccCCCeEE
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS--AEEPLK-----CPVDELING--VQLVGKHDGEITE 381 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s--~~~~~~-----~~~~~~~~~--~~~l~~h~~~V~s 381 (1395)
.+|...|.|..|||....+++++-+.++.+||.....+...-. .+...+ ..+....+. ..++.||+..|+-
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 9999999999999998877777778888888876554321100 010000 001100011 4678899999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++|+|.- -+|+||+.|+.|++|.....+ .+-+.+||.+ .|.++.|. |....+++.| .|++|+|||+...
T Consensus 212 aAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfh----p~q~lIlSns-EDksirVwDm~kR-- 282 (1202)
T KOG0292|consen 212 AAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFH----PHQDLILSNS-EDKSIRVWDMTKR-- 282 (1202)
T ss_pred EEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEec----CccceeEecC-CCccEEEEecccc--
Confidence 9999987 699999999999999876543 4567889998 99999997 8889999977 9999999999888
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecccc
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMP 539 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ 539 (1395)
+++++|+-..+ .|| +++..|..+++++|- |+.+.+|.++... |
T Consensus 283 ----------t~v~tfrrend-------RFW--~laahP~lNLfAAgH-DsGm~VFkleREr-----------------p 325 (1202)
T KOG0292|consen 283 ----------TSVQTFRREND-------RFW--ILAAHPELNLFAAGH-DSGMIVFKLERER-----------------P 325 (1202)
T ss_pred ----------cceeeeeccCC-------eEE--EEEecCCcceeeeec-CCceEEEEEcccC-----------------c
Confidence 89999975443 344 488889999887664 6667788886522 2
Q ss_pred EEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 540 ILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 540 ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
.+.+.+.. -.. -.|..|+-||+.+.
T Consensus 326 a~~v~~n~-LfY-vkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 326 AYAVNGNG-LFY-VKDRFIRSYDLRTQ 350 (1202)
T ss_pred eEEEcCCE-EEE-EccceEEeeecccc
Confidence 22222222 111 12567888888884
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=262.05 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=218.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...|..|.|.|+|+.|++|+..|.+.+|+..+- -...+..|...|.++.| +.++.+++||+.+|.|++|+.....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~w-s~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKW-SHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEE-ccCCCEEEEcCCCceEEecccchhh---
Confidence 357889999999999999999999999998553 34567889999999999 9999999999999999999988654
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
...+..+|...|++++|+|.+..++.++.++.|.+||...... ..++.|
T Consensus 172 -----------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--------------------e~vL~G 220 (464)
T KOG0284|consen 172 -----------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--------------------ERVLRG 220 (464)
T ss_pred -----------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--------------------hheecc
Confidence 1223345668899999999776666555555555555533221 356689
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
|...|.+++|+|.- .+|++||.|..|++||.++|.|+.++.+|+. .|..+.|. +++.+|++++ .|..++++|+
T Consensus 221 HgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~----~n~N~Llt~s-kD~~~kv~Di 293 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFN----PNGNWLLTGS-KDQSCKVFDI 293 (464)
T ss_pred CCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEc----CCCCeeEEcc-CCceEEEEeh
Confidence 99999999999987 7999999999999999999999999999997 99999999 9999999976 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
++- +.++++++|...+.+ +.|+| .-.+|.+|+.||.|+.|.+...+... .-+
T Consensus 294 R~m------------kEl~~~r~Hkkdv~~---------~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~------~i~ 346 (464)
T KOG0284|consen 294 RTM------------KELFTYRGHKKDVTS---------LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG------EIP 346 (464)
T ss_pred hHh------------HHHHHhhcchhhhee---------eccccccccceeeccCCCceEEEecccccccc------CCC
Confidence 977 778889999876644 55555 56789999999999999987322110 111
Q ss_pred eeccccEEEEecCCCCcC---cCCCCeEEEEE
Q 039790 534 FTVTMPILSLTGTTTDAS---PDGEHIVQIYC 562 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~---~s~dg~V~lWd 562 (1395)
+.....++++.-..+..+ ++.|.++++|.
T Consensus 347 ~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cccccceeeeeccccceeEeecCCCcceeeec
Confidence 222234555554432221 35677888885
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=277.38 Aligned_cols=282 Identities=20% Similarity=0.274 Sum_probs=223.8
Q ss_pred CCCEEEEeCcCCCCCee-ee--Cc--eEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEE
Q 039790 167 APPVRLRSSKVPKGRHL-IG--NH--SVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIR 241 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L-~G--~~--~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~Ir 241 (1395)
...|..++ ++++|+.+ .+ +. .+|..... .. ..+..+.+|...|.+++|+++|++|++|+.|++|+
T Consensus 159 ~~sv~~~~-fs~~g~~l~~~~~~~~i~~~~~~~~---~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 159 CPSVTCVD-FSPDGRALAAASSDGLIRIWKLEGI---KS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred cCceEEEE-EcCCCCeEEEccCCCcEEEeecccc---cc------hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 45566666 67777777 21 22 23333111 10 24556689999999999999999999999999999
Q ss_pred EEECC-CC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccE
Q 039790 242 ILNII-TA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPR 319 (1395)
Q Consensus 242 IWd~~-~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~ 319 (1395)
|||+. .+ .++++.+|...|++++| +++++++++|+.|++|+|||+++++ ++..+..|...+..
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~--------------~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGE--------------CVRKLKGHSDGISG 293 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEe-cCCCCEEEEecCCCcEEEEeccCCe--------------EEEeeeccCCceEE
Confidence 99994 43 67899999999999999 8888999999999999999999987 67888899999999
Q ss_pred EEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEEEEEecCCCcEEEEEeC
Q 039790 320 VCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 320 v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~slafspdg~~~LaSgs~ 397 (1395)
++|++++..+++++.++.+.+||....... .+..+.++... ++++.|+|++ .+|++++.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~------------------~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~ 354 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL------------------CLKLLSGAENSAPVTSVQFSPNG-KYLLSASL 354 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee------------------eeecccCCCCCCceeEEEECCCC-cEEEEecC
Confidence 999999998888866666666665432210 02344455544 9999999998 89999999
Q ss_pred CCcEEEEeCCCCceeEEecCCCCC--CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 398 DGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 398 Dg~IrIWDl~sg~~l~tl~~h~~~--~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
|+.+++||++.+.++..+.+|... .+.+..++ +.+.++++++ .|+.|++||+.++ ..++.+
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~sg~-~d~~v~~~~~~s~------------~~~~~l 417 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS----TGGKLIYSGS-EDGSVYVWDSSSG------------GILQRL 417 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEeccccc----CCCCeEEEEe-CCceEEEEeCCcc------------chhhhh
Confidence 999999999999999999999873 23333334 7899999865 9999999999988 788888
Q ss_pred ecc-CcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 476 ELK-SSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 476 ~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
.+| ...+. .+.+++...++++++ .|+.|++|..+
T Consensus 418 ~~h~~~~~~---------~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVS---------DLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCcee---------ccccCCCcCeeeecCcCCCceEEEecCC
Confidence 888 43332 488899999999998 78999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=252.98 Aligned_cols=258 Identities=15% Similarity=0.215 Sum_probs=208.0
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+.......+..|.+.|+-+.||++|+|||++++|.+..||++... ..+++.+|...|..+.| +||.++|++|+.|
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w-SPDdryLlaCg~~ 290 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW-SPDDRYLLACGFD 290 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEE-CCCCCeEEecCch
Confidence 344455677889999999999999999999999999999987653 36789999999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
..+++||+.+|.+...++ .+++..+.+++|.|++..+++++.++.++.|+....... .
T Consensus 291 e~~~lwDv~tgd~~~~y~-------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~-~-------- 348 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYP-------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG-N-------- 348 (519)
T ss_pred HheeeccCCcchhhhhcc-------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh-c--------
Confidence 999999999998433221 123667889999999999998888989998887442210 0
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
|. ....-.|.++++++|| +++++.+.|..|++|+..+..+...+..|. +|++++.| .||+++
T Consensus 349 ---W~--------gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~lise~~--~its~~iS----~d~k~~ 410 (519)
T KOG0293|consen 349 ---WE--------GVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLISEEQ--PITSFSIS----KDGKLA 410 (519)
T ss_pred ---cc--------ccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhccccccC--ceeEEEEc----CCCcEE
Confidence 10 0122468999999999 788888899999999998887776666664 79999999 999998
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++.- .+..|++||+... +.++.|.+|...- |+..++.--.+..++++|+.|+.|||||...
T Consensus 411 LvnL-~~qei~LWDl~e~------------~lv~kY~Ghkq~~------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 411 LVNL-QDQEIHLWDLEEN------------KLVRKYFGHKQGH------FIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEc-ccCeeEEeecchh------------hHHHHhhcccccc------eEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 8865 8999999999865 8888899887543 2332222234568999999999999999988
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
|+
T Consensus 472 gk 473 (519)
T KOG0293|consen 472 GK 473 (519)
T ss_pred Cc
Confidence 75
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=264.77 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=228.2
Q ss_pred cccceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC--CceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 205 EVTPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~--~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+.+.+|.+|...|.++.|.| .+++|++|+.|+.|+||++.. +++++|.||..+|.+++| +.+|..|+|+|.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~-s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASF-NNCGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhc-cccCCeeeeeeccee
Confidence 4577889999999999999999 899999999999999999977 479999999999999999 999999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|++||+++|++ +..+ ..+...+++.|+|++ +.+|+++.++.|+.||++... .
T Consensus 282 lKlwDtETG~~--------------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-v----------- 334 (503)
T KOG0282|consen 282 LKLWDTETGQV--------------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-V----------- 334 (503)
T ss_pred eeeeccccceE--------------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-H-----------
Confidence 99999999982 2222 335667899999999 566666778888888875432 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
++.+..|-+.|.++.|-++| .++++.+.|++++||+.+...++..+..+..+...+|... |++.+++
T Consensus 335 --------vqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~----P~~~~~~ 401 (503)
T KOG0282|consen 335 --------VQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH----PNGKWFA 401 (503)
T ss_pred --------HHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC----CCCCeeh
Confidence 45566789999999999998 8999999999999999999988776654444467788887 9999998
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.=+ .|+.|.||.+... ........|++|....+ ...+.|||||.+|++|..||.+++||+.+-
T Consensus 402 aQs-~dN~i~ifs~~~~---------~r~nkkK~feGh~vaGy-------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 402 AQS-MDNYIAIFSTVPP---------FRLNKKKRFEGHSVAGY-------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred hhc-cCceEEEEecccc---------cccCHhhhhcceeccCc-------eeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 855 9999999987543 22234456777764432 236899999999999999999999999873
Q ss_pred CCCCCcceeeeeeeecc-ccEEEEecCCC--CcC--cCCCCeEEEEE
Q 039790 521 PNPASTRMDYIAEFTVT-MPILSLTGTTT--DAS--PDGEHIVQIYC 562 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~-~~ils~~~~~~--d~~--~s~dg~V~lWd 562 (1395)
+ .+..+..+ .++...+.... ..+ .+-+|.|++|+
T Consensus 465 k--------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 K--------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred h--------hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3 22333333 33333333320 111 24588999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=245.15 Aligned_cols=264 Identities=14% Similarity=0.246 Sum_probs=211.2
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----C
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----G 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----g 280 (1395)
....|..|...++-..|+|.|-|+|+|...|.|||||.... ....|+--.++|.+|+| ..++.+|+..|+. |
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~W-d~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISW-DFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccccccccee-CCCCcEEEEEecCcccee
Confidence 35678899999999999999999999999999999998774 34567778899999999 8899888877753 4
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+++||--+. +--+.+|...+.++.|-|...+.+++|+++..+.+..... ++.
T Consensus 130 ~~F~~DSG~S----------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-----------FKF 182 (603)
T KOG0318|consen 130 HVFLWDSGNS----------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-----------FKF 182 (603)
T ss_pred EEEEecCCCc----------------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-----------eee
Confidence 5777876542 2335577888999999999998888888887777655322 111
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
...+..|...|+|+.|+||| .+|++.+.||+|.|||-.+|+.+..|. +|+| .|++|+|+ ||+.
T Consensus 183 --------k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWs----PDs~ 248 (603)
T KOG0318|consen 183 --------KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWS----PDST 248 (603)
T ss_pred --------eecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEEC----CCCc
Confidence 45567799999999999998 899999999999999999999999998 9998 99999999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCC---CCCCC----------------------------CcccccEEEEEeccCccccccc
Q 039790 438 VLITGGPLNRELKIWASAEEEG---WLLPS----------------------------DIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~---~~~~~----------------------------~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
.+++++ .|.++||||+.+..- +.... +......++.+.+|...+.
T Consensus 249 ~~~T~S-aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT--- 324 (603)
T KOG0318|consen 249 QFLTVS-ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT--- 324 (603)
T ss_pred eEEEec-CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee---
Confidence 999987 999999999987710 10000 0112223344455555443
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++..++|+.+|++|+.||.|.-|+...|...
T Consensus 325 ------aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 325 ------ALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ------EEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 5899999999999999999999999987653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=239.20 Aligned_cols=276 Identities=18% Similarity=0.207 Sum_probs=229.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.|.++.|++|+.|..|.+|.++ | +.+-..++++|.+.|..+.|..|++.|
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~--------g-------------------dceN~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVY--------G-------------------DCENFWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecc--------c-------------------cccceeeeccccceeEeeeeccCCCEE
Confidence 4455677899999999999999854 1 112334566999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.|.+|+.||+++| +...+++|.+.|+.+.-+.....++.||+.||++++||+++..+...+
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------------- 171 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------------- 171 (338)
T ss_pred EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--------------
Confidence 99999999999999998 477899999999999864445567889999999999999987633322
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
. ....++.+.|...+..++.+|-++.|.+||.++.. ...++.||.+.|+.+..+++| .
T Consensus 172 ~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------------------~~~~lsGh~DtIt~lsls~~g-s 229 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--------------------GLYTLSGHADTITGLSLSRYG-S 229 (338)
T ss_pred c-cceeEEEEEecccccceeeccccCceeeeccccCc--------------------ceEEeecccCceeeEEeccCC-C
Confidence 1 13456789999999999999999999999986532 268889999999999999999 8
Q ss_pred EEEEEeCCCcEEEEeCCC----CceeEEecCCCC---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 391 RLASASLDGTVKIWDDRK----STPLAVLRPYDG---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~s----g~~l~tl~~h~~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
++.+-+.|.+|++||++- .+|+..+.+|.- .-...++|+ |+++++-+ |+.|+.+++||....
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws----p~~~~i~a-gs~dr~vyvwd~~~r------ 298 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS----PNGTKITA-GSADRFVYVWDTTSR------ 298 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc----CCCCcccc-ccccceEEEeecccc------
Confidence 999999999999999985 366888888752 145678898 89888766 669999999999887
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|.+.+.. +.|.|...+|.+++.|.+||+=.
T Consensus 299 ------~~lyklpGh~gsvn~---------~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 299 ------RILYKLPGHYGSVNE---------VDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ------cEEEEcCCcceeEEE---------eeecCCCcEEEEeccCceeEeec
Confidence 899999999887654 89999999999999999998743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=245.21 Aligned_cols=274 Identities=22% Similarity=0.317 Sum_probs=221.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.+.+..|++++.||.|++|+... ...+..+..|...+.++.|++++++|
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLET----------------------------GELLRTLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeC----------------------------CCcEEEEecCCcceeEEEECCCCCEE
Confidence 44455567778888888888887321 12345566788889999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.||.|++||+.++ ....+..|...|.++.| .+++.++++++.||.|++||+.+++ ....+
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~ 131 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGK--------------CLTTL 131 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE-cCCCCEEEEecCCCeEEEEECCCcE--------------EEEEe
Confidence 99999999999999985 57778899999999999 7778889988889999999998665 23344
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..+...+.+++|++++..+++++.++.+.+|+..... ....+..|...|.++.|++++ .
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------------------~~~~~~~~~~~i~~~~~~~~~-~ 190 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------------------CVATLTGHTGEVNSVAFSPDG-E 190 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------------------cceeEecCccccceEEECCCc-C
Confidence 4677789999999996544444447777777764211 134555788899999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
.|++++.||.|++||++.++.+..+..|.+ .|.++.|+ +++.++++++ .|+.|++||+.++ +
T Consensus 191 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~~~~~~~~-~~~~i~i~~~~~~------------~ 252 (289)
T cd00200 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFS----PDGYLLASGS-EDGTIRVWDLRTG------------E 252 (289)
T ss_pred EEEEecCCCcEEEEECCCCceecchhhcCC-ceEEEEEc----CCCcEEEEEc-CCCcEEEEEcCCc------------e
Confidence 888898999999999999999999988987 99999998 8877777654 7999999999887 7
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+..+..|...+. .+.|++++.+|++++.|+.|++|+
T Consensus 253 ~~~~~~~~~~~i~---------~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLSGHTNSVT---------SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEccccCCcEE---------EEEECCCCCEEEEecCCCeEEecC
Confidence 7888876665443 488999999999999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=243.43 Aligned_cols=282 Identities=15% Similarity=0.189 Sum_probs=231.0
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+.|-...+++|+.|++|++||+. + +....++.||-..|.++++|.--.||+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDla-----------------t-----------g~LkltltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLA-----------------T-----------GQLKLTLTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcc-----------------c-----------CeEEEeecchhheeeeeeecccCceEE
Confidence 333444677777777777777733 1 245667889999999999999999999
Q ss_pred EEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+++.|+.|+.||++..+ ++.+.||-..|+|++. .|.-+.|++|+.|.++||||+++.. .+.++.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~l-hPTldvl~t~grDst~RvWDiRtr~--------------~V~~l~ 274 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRA--------------SVHVLS 274 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEec-cccceeEEecCCcceEEEeeecccc--------------eEEEec
Confidence 99999999999999875 7789999999999999 7778899999999999999999976 677788
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
+|...|.++.+.+.+..++.++.+..|..||...... ...+..|...|.+++.+|.. +.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e-~~ 333 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKE-NL 333 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCch-hh
Confidence 9999999999999999899888888888887754322 56677899999999999987 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
||+++.|. |+-|++..|..+..+.+|.+ -|.++... .|| +++++| ++|.|.+||.+++ ..++.
T Consensus 334 fASas~dn-ik~w~~p~g~f~~nlsgh~~-iintl~~n----sD~-v~~~G~-dng~~~fwdwksg---------~nyQ~ 396 (460)
T KOG0285|consen 334 FASASPDN-IKQWKLPEGEFLQNLSGHNA-IINTLSVN----SDG-VLVSGG-DNGSIMFWDWKSG---------HNYQR 396 (460)
T ss_pred hhccCCcc-ceeccCCccchhhccccccc-eeeeeeec----cCc-eEEEcC-CceEEEEEecCcC---------ccccc
Confidence 99999886 99999999999999999998 99999997 454 677766 9999999999998 23333
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++....++.. ...-+...+|...|..|++|..|.+|++|.-+.
T Consensus 397 ~~t~vqpGSl~----sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 397 GQTIVQPGSLE----SEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccccCCccc----cccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 44444443322 112223588999999999999999999998543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=283.76 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=210.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~ 230 (1395)
+.+.+++..|++++.|+.|++|+.... + ..+.. ...++..+. +...|.+++|++ ++.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~----~------------~~~~~----~~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESI----I------------KDGRD----IHYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcc----c------------ccccc----cccceEEec-ccCceeeEEeccCCCCE
Confidence 455566677777777777777773210 0 00000 001222233 346789999987 5789
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++ .+..+.+|.+.|++++|++.++.+|++|+.||+|++||+.++. .+..
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------------~~~~ 613 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------------SIGT 613 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------------EEEE
Confidence 999999999999999987 4678899999999999954688999999999999999999876 2223
Q ss_pred ecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 310 LADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+.. ...+.++.|++. +..+++++.++.+.+|+...... .+..+.+|...|+++.|. ++
T Consensus 614 ~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------------~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------------PLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------------cceEecCCCCCEEEEEEe-CC
Confidence 333 346778999665 55555555566666666533211 145567899999999997 55
Q ss_pred CcEEEEEeCCCcEEEEeCCC------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRK------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
.+|++++.|++|+|||++. +.++.++.+|.. .+.+++|+ +++.+|++++ .|+.|+||+....
T Consensus 673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s----~~~~~lasgs-~D~~v~iw~~~~~----- 740 (793)
T PLN00181 673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLS----VSDGYIATGS-ETNEVFVYHKAFP----- 740 (793)
T ss_pred -CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEc----CCCCEEEEEe-CCCEEEEEECCCC-----
Confidence 7999999999999999984 367889999987 99999999 8999999866 9999999998765
Q ss_pred CCCcccccEEEEEeccCcc-cc---cccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 463 PSDIESWKCTQTLELKSSA-EL---RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~-i~---~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..+..+...... +. ......++..++|+++|.+|++|+.||.|+||++
T Consensus 741 -------~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 -------MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -------CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 333222221110 00 0011223457999999999999999999999986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=281.31 Aligned_cols=250 Identities=13% Similarity=0.180 Sum_probs=195.7
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
+..|.+.|++++|+++|++||+|+.||.|+|||.... ....+. +...|.+++|++.++.+|++|+.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997542 122333 346799999966678999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+|||+.+++ .+..+..|...|++++|++. +..+++++.++.+.+|+... +..
T Consensus 558 ~lWd~~~~~--------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~------------ 610 (793)
T PLN00181 558 QVWDVARSQ--------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS------------ 610 (793)
T ss_pred EEEECCCCe--------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE------------
Confidence 999999876 45556778899999999985 44455555556666666532 211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+..+. +...|.++.|++.++.+|++|+.||.|++||++.+. ++.++.+|.. .|+++.|. ++.+|+
T Consensus 611 -------~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-----~~~~lv 676 (793)
T PLN00181 611 -------IGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-----DSSTLV 676 (793)
T ss_pred -------EEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-----CCCEEE
Confidence 33444 336799999976544899999999999999999875 6788899987 99999995 677888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++ .|++|+|||+..+. ....+.++.++.+|...+. .+.|+++|.+|++|+.|+.|++|+...
T Consensus 677 s~s-~D~~ikiWd~~~~~------~~~~~~~l~~~~gh~~~i~---------~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 677 SSS-TDNTLKLWDLSMSI------SGINETPLHSFMGHTNVKN---------FVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEE-CCCEEEEEeCCCCc------cccCCcceEEEcCCCCCee---------EEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 876 99999999997541 0112467888888875432 488999999999999999999999765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=239.49 Aligned_cols=279 Identities=15% Similarity=0.195 Sum_probs=222.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC---CEEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR---NYICYGL 235 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg---~~LasGs 235 (1395)
..|++++.||.+|+|+. .++.+..+.||.+.|..++|-... ..|++++
T Consensus 116 ~~IltgsYDg~~riWd~-----------------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDL-----------------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ceEEEeecCCeeEEEec-----------------------------CCceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 78999999999999993 346778889999999988875533 4699999
Q ss_pred cCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc------------c
Q 039790 236 KLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP------------Q 298 (1395)
Q Consensus 236 ~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~------------~ 298 (1395)
.|.++++|.++.+ ....-+||.+.|-+|.. ..+|..+++|+.|.+|+||+..+.. ..... .
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv-~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV-DSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKRE 244 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEe-cCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhh
Confidence 9999999999886 23344599999999999 8999999999999999999943321 11100 1
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
.....-..+.+..+|...|..|.|++ ...++.++.+..|..||....+. ...+ .....
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--------------------~~~~-~~~ks 302 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--------------------KSTL-TTNKS 302 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc--------------------eeee-ecCcc
Confidence 11222335667889999999999998 55678888888888888755332 1122 24567
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++|+.+++.. .+|++|+.|..||+||.|++ ...++|.+|.+ +|.+|.|+ |...+++.+|+.|+++++||++
T Consensus 303 l~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws----p~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 303 LNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS----PTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC----CCCceEEEEEecCCeEEEEEec
Confidence 9999999987 89999999999999999986 35678999998 99999999 8888888888899999999999
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+. +..+..+.+|.+.+.+ +.| .+|.+|++|+.|+.|+|+..
T Consensus 377 S~-----------k~plydI~~h~DKvl~---------vdW-~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 377 ST-----------KAPLYDIAGHNDKVLS---------VDW-NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cC-----------CCcceeeccCCceEEE---------Eec-cCCceEEeccCcceEEEecc
Confidence 87 2378888888877643 555 45779999999999999874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=243.64 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=217.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE---------EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS---------LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~---------~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
+....+.|..|+|||.||++|+.||.|.|||..+|+++ .|--|.+.|.|++| +.|...|++|+.||.|+|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-SRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-SRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-cccHHHhhccCcCCcEEE
Confidence 34567889999999999999999999999999998432 34458899999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|.+.+|.|+..
T Consensus 290 Wri~tG~ClRr--------------------------------------------------------------------- 300 (508)
T KOG0275|consen 290 WRIETGQCLRR--------------------------------------------------------------------- 300 (508)
T ss_pred EEEecchHHHH---------------------------------------------------------------------
Confidence 99999883211
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.-..|...|+|+.|+.|+ ..+++++.|.+|||.-+.+|++++.|+||.. .|+.+.|+ +||.++++++
T Consensus 301 ------FdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft----~dG~~iisaS- 367 (508)
T KOG0275|consen 301 ------FDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFT----DDGHHIISAS- 367 (508)
T ss_pred ------hhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccc-cccceEEc----CCCCeEEEec-
Confidence 112599999999999998 7999999999999999999999999999998 99999999 9999999976
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.||+|++|+..+. .|+.+|+..+. +..++.++-++.+...++.+-..++|||.++...
T Consensus 368 sDgtvkvW~~Ktt------------eC~~Tfk~~~~------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---- 425 (508)
T KOG0275|consen 368 SDGTVKVWHGKTT------------ECLSTFKPLGT------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---- 425 (508)
T ss_pred CCccEEEecCcch------------hhhhhccCCCC------cccceeEEEcCCCCceEEEEcCCCeEEEEeccce----
Confidence 9999999999988 99999986652 2335667888888889999999999999998631
Q ss_pred Ccceeeeeeeecc--------ccEEEEecCCCCcCcCCCCeEEEEEcCCCceeee---cccceEEecCCC-CCeecccCC
Q 039790 525 STRMDYIAEFTVT--------MPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQY---ALDLSQCLPPPL-ENAELEKTD 592 (1395)
Q Consensus 525 ~~~~~~i~~f~~~--------~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~---~~~~~~cl~~s~-d~l~~~~sd 592 (1395)
.+..|... ..+++.-|.. ..+..+|+.++.|.+.+|++... |-....-+.-.+ .++..++++
T Consensus 426 -----vVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 -----VVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred -----EEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 22223211 1222223332 33467899999999999988542 222222333333 347777888
Q ss_pred CceEEEe
Q 039790 593 SNATRAF 599 (1395)
Q Consensus 593 ~~v~~iW 599 (1395)
++.+++|
T Consensus 500 DgllKLW 506 (508)
T KOG0275|consen 500 DGLLKLW 506 (508)
T ss_pred cchhhhc
Confidence 8999888
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=253.06 Aligned_cols=295 Identities=18% Similarity=0.182 Sum_probs=201.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----------c----eEEeccCCCCeEEEEEeeC-CCCEEEEEECCCc
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA----------L----RSLLRGHTQRVTDMAFFAE-DVHLLASASVDGR 281 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----------~----~~~l~~H~~~V~slaf~s~-dg~~LaSgs~Dgt 281 (1395)
..|....+++|+..+++++.+..+..|+...+ . ...+.+|.+.|++++| ++ ++++|++|+.||+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f-sP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF-NPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE-cCCCCCEEEEEeCCCE
Confidence 33444445556555555555555555654433 1 1247899999999999 65 8899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|+|||+.++.... .....+..+.+|...|.+++|+|.+..++++ +.++.+.+||... +.
T Consensus 100 IkIWdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~------------ 159 (493)
T PTZ00421 100 IMGWGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK------------ 159 (493)
T ss_pred EEEEecCCCcccc-------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce------------
Confidence 9999998753110 1112345567788999999999987655555 4455566665532 21
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+.+|.+.|++++|+++| .+|++|+.||+|+|||+++++.+.++.+|.+..+..+.|. +++..|+
T Consensus 160 -------~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~----~~~~~iv 227 (493)
T PTZ00421 160 -------AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA----KRKDLII 227 (493)
T ss_pred -------EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc----CCCCeEE
Confidence 145677899999999999998 8999999999999999999999999999986445678898 8888888
Q ss_pred EEe---cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEE
Q 039790 441 TGG---PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIH 516 (1395)
Q Consensus 441 s~G---s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWd 516 (1395)
++| +.|+.|+|||+++.. .++..+..+... ......|++++.+|++++ .|+.|++|+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~-----------~p~~~~~~d~~~--------~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMA-----------SPYSTVDLDQSS--------ALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCC-----------CceeEeccCCCC--------ceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 776 248999999998651 233333333221 112467899999998887 499999999
Q ss_pred cCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCcee
Q 039790 517 MDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 517 l~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~ 569 (1395)
+..+. +....+|....+...+.......+ ...-...++|.+....+.
T Consensus 289 l~~~~------~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~~~i~ 336 (493)
T PTZ00421 289 LMNER------LTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTYHSLY 336 (493)
T ss_pred eeCCc------eEEEeeccCCCCCcceEecccccccccceeeeEEEEecCCeEE
Confidence 98753 223334444334333333331111 122345688888766554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-25 Score=229.74 Aligned_cols=268 Identities=18% Similarity=0.287 Sum_probs=213.0
Q ss_pred eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCC--CceEEeccCCCCe
Q 039790 184 IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIIT--ALRSLLRGHTQRV 260 (1395)
Q Consensus 184 ~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~--~~~~~l~~H~~~V 260 (1395)
.|.++++.++....+. ......|.. .+.+.+++|+++ .+.+++++.||+++|||... +.++.++.|..+|
T Consensus 35 ~G~G~L~ile~~~~~g------i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV 107 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKG------IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREV 107 (311)
T ss_pred ccCceEEEEecCCCCC------eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhhe
Confidence 5566777776642111 122233332 367889999984 57788899999999999654 3688999999999
Q ss_pred EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEE
Q 039790 261 TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILK 340 (1395)
Q Consensus 261 ~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~ 340 (1395)
.++.|+..++..+++++.||+|++|+...+. .+.++.+|...|+...|+|....+++++++++..+
T Consensus 108 ~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred EEeccccccceeEEeeccCCceEeecCCCCc--------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence 9999977788889999999999999998776 67778899999999999999999999998887777
Q ss_pred EEcCCC-CccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCC
Q 039790 341 IDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPY 418 (1395)
Q Consensus 341 ~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h 418 (1395)
+|+.+. ++ ...+..|...|.|+.|+..+.++|+||+.|+.||+||+|.- .++..+.+|
T Consensus 174 lwdvr~~gk--------------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 174 LWDVRSPGK--------------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred EEEecCCCc--------------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 766443 22 23477899999999999988889999999999999999984 789999999
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
.- .|..|.|| |...-|+++++.|-++||||...++ .++.+++.|..-+. .+.|+.
T Consensus 234 ~~-AVRkvk~S----ph~~~lLaSasYDmT~riw~~~~~d-----------s~~e~~~~HtEFv~---------g~Dws~ 288 (311)
T KOG0277|consen 234 GL-AVRKVKFS----PHHASLLASASYDMTVRIWDPERQD-----------SAIETVDHHTEFVC---------GLDWSL 288 (311)
T ss_pred ce-EEEEEecC----cchhhHhhhccccceEEecccccch-----------hhhhhhhccceEEe---------cccccc
Confidence 86 99999999 7666555556799999999997551 55666666654332 244433
Q ss_pred -CCCEEEEEeCCCeEEEEEc
Q 039790 499 -AGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 499 -dg~~LaSgs~Dg~I~iWdl 517 (1395)
++.++++.+.|+.+|||+-
T Consensus 289 ~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 289 FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccCceeeecccccceeeecc
Confidence 6789999999999999983
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=258.40 Aligned_cols=287 Identities=20% Similarity=0.256 Sum_probs=225.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
++|......|.+++|+|..-+|.++...|.|++||.+-+ ++..|.+|.++|..|+| ++.+.+|+|||.|-.|+||+..
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~F-H~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDF-HPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeee-cCCCCeEEecCCccEEEEEecc
Confidence 456667788999999999999999999999999999988 58899999999999999 8899999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+.+ |+....+|.+.|..+.||+.-.+|++++.+.+| ++|..... +.
T Consensus 82 ~rr--------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTI-rIWNwqsr-------------------~~ 127 (1202)
T KOG0292|consen 82 TRR--------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI-RIWNWQSR-------------------KC 127 (1202)
T ss_pred cce--------------ehhhhccccceeEEeeccCCCceEEEccCCCeE-EEEeccCC-------------------ce
Confidence 987 566777899999999999999877766555555 55543332 22
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--------C---------------------ceeEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--------S---------------------TPLAVLRPYD 419 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--------g---------------------~~l~tl~~h~ 419 (1395)
+.++.||...|.|..|+|.. .+++|+|.|.+|||||+.. + ...+.+.||+
T Consensus 128 iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 128 IAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred EEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 78899999999999999976 7999999999999999841 1 1234678998
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
. .|+-++|. |.-..+++++ +|+.|++|.+... +.|+ +.+..+|.+.+. ++.|+|.
T Consensus 207 R-GVNwaAfh----pTlpliVSG~-DDRqVKlWrmnet---------KaWE-vDtcrgH~nnVs---------svlfhp~ 261 (1202)
T KOG0292|consen 207 R-GVNWAAFH----PTLPLIVSGA-DDRQVKLWRMNET---------KAWE-VDTCRGHYNNVS---------SVLFHPH 261 (1202)
T ss_pred c-ccceEEec----CCcceEEecC-CcceeeEEEeccc---------ccee-ehhhhcccCCcc---------eEEecCc
Confidence 7 99999997 8888888866 9999999999765 4444 345677777654 4888999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCC-CCcC-cCCCCeEEEEEcCC
Q 039790 500 GLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTT-TDAS-PDGEHIVQIYCVQT 565 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~-~d~~-~s~dg~V~lWdv~t 565 (1395)
..+|++.+.|++|+|||+.... . +..|.-. ...+.++..+ ++.+ +..|+-+.||-++-
T Consensus 262 q~lIlSnsEDksirVwDm~kRt-----~---v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRT-----S---VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred cceeEecCCCccEEEEeccccc-----c---eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 9999999999999999997633 2 2223211 2223333332 1222 34577788887764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=242.00 Aligned_cols=252 Identities=13% Similarity=0.074 Sum_probs=201.5
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC--CCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH--TQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H--~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+...++.+|...|..+.||||.+||++|+.|..+.+||+.+|......+| ...+.+++| .|||..+++|+.|++|.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W-~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW-CPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE-ccCCceeEecCCCCcEE
Confidence 466788999999999999999999999999999999999999965554444 488999999 89999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
.||++.... + ...+.....+.+++..++|.++++++.+..+..++......
T Consensus 338 ~wdlDgn~~--------~------~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--------------- 388 (519)
T KOG0293|consen 338 MWDLDGNIL--------G------NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--------------- 388 (519)
T ss_pred EecCCcchh--------h------cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---------------
Confidence 999985430 0 11122234577899999999999999998888876543211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.. +......|+++++|.|+ +++++.-.+..|++||+...+.++.+.||+. ..|..-||- .....++.+
T Consensus 389 -----r~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg----g~~~~fiaS 457 (519)
T KOG0293|consen 389 -----RG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG----GGNDKFIAS 457 (519)
T ss_pred -----hc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC----CCCcceEEe
Confidence 11 22345689999999998 7888888999999999999999999999974 245566775 333344455
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||.|+.|+||+..++ +.+.++.+|...+.+ ++|+| +...+|++++||+|+||-...
T Consensus 458 GSED~kvyIWhr~sg------------kll~~LsGHs~~vNc---------VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG------------KLLAVLSGHSKTVNC---------VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC------------ceeEeecCCcceeeE---------EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 779999999999998 999999999976543 66666 556899999999999998653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=235.10 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=227.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC--CEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV--HLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg--~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|.++|.++... +++|++|++||.+||||..+.+...+.||+++|.+++|...+. ..|++++.|.++++|.++.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 488999998887 8899999999999999999999999999999999999955443 369999999999999999876
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC--ccccccCCCC---CccCccccc
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG--KGERFSAEEP---LKCPVDELI 366 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~--~~~~~s~~~~---~~~~~~~~~ 366 (1395)
.. +.++....+|...|-+|...+++..++.++.+..+.+|+..... ..+.++.... .+-......
T Consensus 181 ~~----------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 181 NK----------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred hh----------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 21 12333444899999999999999877777777777777622211 1111211100 011122334
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.++..+.||...|.++.|++. ..+.++|.|.+|+.||+.++.++.++.+.. .++|+.++ |...+|++++ .|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~----~~~~Ll~~gs-sd 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYS----PLSKLLASGS-SD 321 (423)
T ss_pred CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCc--ceeEeecc----cccceeeecC-CC
Confidence 558889999999999999983 699999999999999999999999998775 69999998 8887777754 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
..|++||.+++ ..--..++|.+|.+.+.. +.|+|. -.+|++|+.||++++||++..+.
T Consensus 322 r~irl~DPR~~---------~gs~v~~s~~gH~nwVss---------vkwsp~~~~~~~S~S~D~t~klWDvRS~k~--- 380 (423)
T KOG0313|consen 322 RHIRLWDPRTG---------DGSVVSQSLIGHKNWVSS---------VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--- 380 (423)
T ss_pred CceeecCCCCC---------CCceeEEeeecchhhhhh---------eecCCCCceEEEEEecCCeEEEEEeccCCC---
Confidence 99999999998 333566889999876543 666665 56789999999999999987442
Q ss_pred cceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEc
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv 563 (1395)
-+..|..+ ...+++.+-.....+ ++.|..|+||.-
T Consensus 381 -plydI~~h--~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 381 -PLYDIAGH--NDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -cceeeccC--CceEEEEeccCCceEEeccCcceEEEecc
Confidence 22233322 234455554431122 234778888753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=248.56 Aligned_cols=246 Identities=17% Similarity=0.224 Sum_probs=201.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..++.+.-..-.|....|-.-.+++++|+.|..||||+.+++ +++.|..|.+.|.+|+. +|...+++|++.|-+|++|
T Consensus 46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iav-HPt~P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV-HPTLPYVLTSSDDMTIKLW 124 (794)
T ss_pred eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeee-cCCCCeEEecCCccEEEEe
Confidence 344555555577888889999999999999999999999998 58899999999999999 7888999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|.+.+ ..+.+++.+|...|.+++|+|.+..-|++++-++.+++|......
T Consensus 125 ~we~~-------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----------------- 174 (794)
T KOG0276|consen 125 DWENE-------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----------------- 174 (794)
T ss_pred eccCc-------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------
Confidence 99864 347789999999999999999998877777765555555432211
Q ss_pred ccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..++.+|...|+|+.|-+-|. -+|+||+.|.+|+|||..+..|++++.||.. .|..++|. |.-.++++|+
T Consensus 175 --~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fh----p~lpiiisgs- 246 (794)
T KOG0276|consen 175 --PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFH----PELPIIISGS- 246 (794)
T ss_pred --CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEec----CCCcEEEEec-
Confidence 1567889999999999987652 3999999999999999999999999999997 99999997 8888888855
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
.||++|||+..+- +...++......+. +++....+..++.|.+.|.|
T Consensus 247 EDGTvriWhs~Ty------------~lE~tLn~gleRvW---------~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 247 EDGTVRIWNSKTY------------KLEKTLNYGLERVW---------CIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred CCccEEEecCcce------------ehhhhhhcCCceEE---------EEeecCCCCeEEEeccCCcE
Confidence 9999999998776 66666665554432 25555666667777666654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=231.03 Aligned_cols=294 Identities=15% Similarity=0.156 Sum_probs=222.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
++..|..+.++||+.|....+|+... +..+..+.+|.+.|+|+.|+.||.||
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCceEEEEEccCceEE
Confidence 44455667888888888888888331 12446678999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
|+|..+|.|+||+..++. ...+...-+.|.-|.| +|.+.+|+.|+.||.|.+|.+.++. ..+++
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W-Hp~a~illAG~~DGsvWmw~ip~~~--------------~~kv~ 186 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW-HPRAHILLAGSTDGSVWMWQIPSQA--------------LCKVM 186 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEe-cccccEEEeecCCCcEEEEECCCcc--------------eeeEe
Confidence 999999999999999984 4555556667888899 6789999999999999999999854 45778
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc-ccc-------------CCCC--CccCcccc------cc-
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE-RFS-------------AEEP--LKCPVDEL------IN- 367 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~-~~s-------------~~~~--~~~~~~~~------~~- 367 (1395)
.+|...+++=+|.|+|++++.+-.++.+++|+... +... ..+ ..+. +.|..+.. ..
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 88999999999999998777777766666666543 2210 000 0000 00100000 00
Q ss_pred ---------ceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 368 ---------GVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 368 ---------~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.......+...+.||.|.|... .+.|+|+.||+|-|||+...++.+.+. |.. .|..+.|. + .
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~-~V~~l~w~----~-t 338 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HED-GVTKLKWL----N-T 338 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCC-ceEEEEEc----C-c
Confidence 0111123455555555555432 488999999999999999888766665 665 79999997 5 6
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+|++++ .||.|++||.++| +++.++.+|...+.. ++++++++++++++.|++.+||+
T Consensus 339 ~~l~t~c-~~g~v~~wDaRtG------------~l~~~y~GH~~~Il~---------f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTAC-ANGKVRQWDARTG------------QLKFTYTGHQMGILD---------FALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeec-cCceEEeeecccc------------ceEEEEecCchheeE---------EEEcCCCcEEEEecCCCeEEEEe
Confidence 7888877 9999999999999 999999999987754 88999999999999999999998
Q ss_pred cC
Q 039790 517 MD 518 (1395)
Q Consensus 517 l~ 518 (1395)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 64
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=221.20 Aligned_cols=286 Identities=17% Similarity=0.238 Sum_probs=225.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
+.+.+|...|.+|+|+.+|.+|++|+.|++++||+++... ....++|.+.|-.++|++.+.++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677899999999999999999999999999999998863 3367899999999999888899999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
++.+++ +........ -.-++|+|+|+++++++.++.+..+|.++....
T Consensus 94 ~r~~k~--------------~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~----------------- 141 (313)
T KOG1407|consen 94 IRSGKC--------------TARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIV----------------- 141 (313)
T ss_pred eccCcE--------------EEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEeccccee-----------------
Confidence 999882 222222122 235899999999999999999999998764321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.-......++.++|+-++ .+|+....-|+|.|.....-+++.++++|.. .+.||.|+ |+|+++++|+ .|
T Consensus 142 ----~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~----p~GryfA~Gs-AD 210 (313)
T KOG1407|consen 142 ----NEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFD----PDGRYFATGS-AD 210 (313)
T ss_pred ----ehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCc-ceEEEEEC----CCCceEeecc-cc
Confidence 111244568889999766 6777667779999999999999999999997 89999999 9999999965 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
..+.+||+..- -|++.|.-+.-. +..+.||.||++|++++.|..|-|-++++|..
T Consensus 211 AlvSLWD~~EL------------iC~R~isRldwp---------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~---- 265 (313)
T KOG1407|consen 211 ALVSLWDVDEL------------ICERCISRLDWP---------VRTLSFSHDGRMLASASEDHFIDIAEVETGDR---- 265 (313)
T ss_pred ceeeccChhHh------------hhheeeccccCc---------eEEEEeccCcceeeccCccceEEeEecccCCe----
Confidence 99999999877 888888755444 44699999999999999999999999998752
Q ss_pred ceeee--------eeeeccccEEEEecCCCCcCc-CCCCeEEEEEcC
Q 039790 527 RMDYI--------AEFTVTMPILSLTGTTTDASP-DGEHIVQIYCVQ 564 (1395)
Q Consensus 527 ~~~~i--------~~f~~~~~ils~~~~~~d~~~-s~dg~V~lWdv~ 564 (1395)
+..| -.+....+++.+.....+.-. -+.|.|+||-+.
T Consensus 266 -~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 266 -VWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred -EEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 1111 112222456666655422211 134788888654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=252.42 Aligned_cols=275 Identities=18% Similarity=0.198 Sum_probs=197.2
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
|+.+|.|++|+.... .+..+.+|.+.|.+++| +++ +++|++|+.||+|+|||+.++.... ......+..+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~laf-sP~~~~lLASgS~DgtIrIWDi~t~~~~~------~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQF-NPCFSEILASGSEDLTIRVWEIPHNDESV------KEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEE-cCCCCCEEEEEeCCCeEEEEECCCCCccc------cccccceEEee
Confidence 566889999998765 46789999999999999 554 8899999999999999998653100 00011233456
Q ss_pred CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
+|...|.+++|+|++..++++++ ++.+.+||... +.. ...+. |...|.+++|+++| .
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~-------------------~~~i~-~~~~V~SlswspdG-~ 180 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKR-------------------AFQIN-MPKKLSSLKWNIKG-N 180 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcE-------------------EEEEe-cCCcEEEEEECCCC-C
Confidence 78889999999999988776655 55555555432 211 22333 56789999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE-----EEEeecCCCCCcEEEEEecCC---CeEEEEECCCCCCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC-----VTFLIGPHPQHIVLITGGPLN---RELKIWASAEEEGWLL 462 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s-----V~fs~~~~pdg~~L~s~Gs~D---g~I~IWDl~tg~~~~~ 462 (1395)
+|++++.|+.|+|||++++.++.++.+|.+ .+.+ ..|+ +++.+|+++|..+ ++|+|||+++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs----~d~~~IlTtG~d~~~~R~VkLWDlr~~----- 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLG----GDDNYILSTGFSKNNMREMKLWDLKNT----- 250 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEc----CCCCEEEEEEcCCCCccEEEEEECCCC-----
Confidence 999999999999999999999999999987 4433 3345 7888999988332 47999999853
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
..++..+..+..... ....+.+++|.++++|+.|+.||+|++..+ .+.++.+|....+...
T Consensus 251 ------~~pl~~~~ld~~~~~-------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~------~~~~l~~~~s~~p~~g 311 (568)
T PTZ00420 251 ------TSALVTMSIDNASAP-------LIPHYDESTGLIYLIGKGDGNCRYYQHSLG------SIRKVNEYKSCSPFRS 311 (568)
T ss_pred ------CCceEEEEecCCccc-------eEEeeeCCCCCEEEEEECCCeEEEEEccCC------cEEeecccccCCCccc
Confidence 145555544332110 012344667999999999999999999764 4677888887777777
Q ss_pred EecCCCCcC-cCCCCeEEEEEcCCC
Q 039790 543 LTGTTTDAS-PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 543 ~~~~~~d~~-~s~dg~V~lWdv~t~ 566 (1395)
+...+...+ ...-...|+|-+...
T Consensus 312 ~~f~Pkr~~dv~~cEi~R~~kl~~~ 336 (568)
T PTZ00420 312 FGFLPKQICDVYKCEIGRVYKNENN 336 (568)
T ss_pred eEEccccccCchhhhHhHHhhhcCC
Confidence 777763332 122234567766543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=249.56 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
++++++.. +.+.|..|-|.++|++.|.+.|.+.|||+.... +.+.+.|.+.|++|+. .+|+..+++||.|.+|++|
T Consensus 405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~-~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL-SPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee-cCCCCceEEecCCcEEEEE
Confidence 67777765 489999999999999999999999999999874 5677899999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEE--EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPDEEDKPQILGKIVVAI--QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l--~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+.--.. .+. +.+.+..+ ...-.-...+.++.++|++.+++++--++++.++......
T Consensus 482 df~l~~~---~~g-t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---------------- 541 (888)
T KOG0306|consen 482 DFKLVVS---VPG-TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---------------- 541 (888)
T ss_pred eEEEEec---cCc-ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee----------------
Confidence 9864321 000 01111111 0111235678899999999888877778888777664321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
-...+.||.-+|.|+.++||+ .+++|||.|+.|+||-+.-|.|-+.|-+|++ .|.+|.|. |....+++||
T Consensus 542 ----FflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~----P~~~~FFt~g 611 (888)
T KOG0306|consen 542 ----FFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFL----PKTHLFFTCG 611 (888)
T ss_pred ----eeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEc----ccceeEEEec
Confidence 145677899999999999998 8999999999999999999999999999998 99999999 8888888887
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|+.|+-||-... .+++++.+|...+++ ++.+++|.++++++.|.+|++|.-
T Consensus 612 -KD~kvKqWDg~kF------------e~iq~L~~H~~ev~c---------Lav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 612 -KDGKVKQWDGEKF------------EEIQKLDGHHSEVWC---------LAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred -CcceEEeechhhh------------hhheeeccchheeee---------eEEcCCCCeEEeccCCceeEeeec
Confidence 9999999998877 999999999987754 999999999999999999999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=257.56 Aligned_cols=243 Identities=23% Similarity=0.345 Sum_probs=205.6
Q ss_pred ceee-eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 208 PITK-YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 208 ~i~~-l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+.. +.||.+.|++++|..-+.+|++|+.|.+++|||..+| +...+.+|...|.++.. .+.++++|+.|.+|++|
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW 316 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence 3444 8899999999999988899999999999999999998 68899999999999988 67789999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
++.++. ++.+..+|...|.++..+ +..+++++.++.|.+|+.. .++ |
T Consensus 317 ~v~n~~--------------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~-----------c----- 363 (537)
T KOG0274|consen 317 DVTNGA--------------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK-----------C----- 363 (537)
T ss_pred eccCcc--------------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce-----------e-----
Confidence 999888 677777799999999887 6677777788877777664 222 2
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+.+|...|+++.+... .++++|+.|++|++||+++. +|++++.+|.. -|..+.+ .+.+|++++
T Consensus 364 ---l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~------~~~~Lvs~~- 430 (537)
T KOG0274|consen 364 ---LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL------RDNFLVSSS- 430 (537)
T ss_pred ---eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc------ccceeEecc-
Confidence 7888999999999988764 68999999999999999999 99999999987 7777776 477888865
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.|++|++||..++ .|++++.++ ...+. .+++ ....+++++.|+.+++||+..+..
T Consensus 431 aD~~Ik~WD~~~~------------~~~~~~~~~~~~~v~---------~l~~--~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 431 ADGTIKLWDAEEG------------ECLRTLEGRHVGGVS---------ALAL--GKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccEEEeecccC------------ceeeeeccCCcccEE---------Eeec--CcceEEEEecCCeeEEEecccCch
Confidence 9999999999988 999999984 33321 1222 257888999999999999998753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=217.36 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=213.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+-.--++.+.++++.|++||+|+. +.+.+|++|.+|...|..++.+.|...|
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp----------------------------~rg~liktYsghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNP----------------------------LRGALIKTYSGHGHEVLDAALSSDNSKF 74 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecc----------------------------cccceeeeecCCCceeeecccccccccc
Confidence 333445678888888888888883 2457889999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.|..|.+||+++|+ .+.|++|.+.|+.++| ..+...+++|+.|.+|++||.++... ..++++
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~------------ePiQil 141 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRF-NEESSVVASGSFDSSVRLWDCRSRSF------------EPIQIL 141 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEe-cCcceEEEeccccceeEEEEcccCCC------------Cccchh
Confidence 999999999999999995 7899999999999999 88899999999999999999998752 256667
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......|.+|.... ..|++++.++.+..++.+...- ...-...+|+|++|++|+ +
T Consensus 142 dea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l----------------------~sDy~g~pit~vs~s~d~-n 196 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL----------------------SSDYFGHPITSVSFSKDG-N 196 (307)
T ss_pred hhhcCceeEEEecc--cEEEeeccCCcEEEEEeeccee----------------------ehhhcCCcceeEEecCCC-C
Confidence 77777777777654 4578888888888888754221 112245689999999999 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.++.++.|++|++.|-.+|+.+..++||.+ .-+ .++++ ....++++ ||.||.|.+||+...
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~----qsdthV~s-gSEDG~Vy~wdLvd~----------- 259 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLN----QSDTHVFS-GSEDGKVYFWDLVDE----------- 259 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeec----ccceeEEe-ccCCceEEEEEeccc-----------
Confidence 999999999999999999999999999986 333 34454 33445555 679999999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..+..+..+...+ ...+.+.|.-..|+++. ++.+++|.
T Consensus 260 -~~~sk~~~~~~v~--------v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 -TQISKLSVVSTVI--------VTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred -eeeeeeccCCcee--------EEeeecccCccceeEec-CCceecee
Confidence 7777777766542 22466666665555544 34566775
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=228.08 Aligned_cols=259 Identities=16% Similarity=0.258 Sum_probs=199.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------------C-------ceEEeccCCCCeEEEEEeeCCC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------------A-------LRSLLRGHTQRVTDMAFFAEDV 270 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------------~-------~~~~l~~H~~~V~slaf~s~dg 270 (1395)
..+..|...+.+-+|++||.++|+|+.|..|+|+|++. + .+++|..|.+.|+++.| .|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F-HPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF-HPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee-cchh
Confidence 45678999999999999999999999999999999872 1 36788999999999999 7888
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.+|++|+.|++|++||+....... .++++.+ ...+.++.|||.|.+++++.....+..+|.....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKr-----------A~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--- 249 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKR-----------AFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--- 249 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHH-----------HHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEecccee---
Confidence 999999999999999998643111 1222222 3457799999999877766666666666654321
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEe
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFL 429 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs 429 (1395)
+|-.. .--.+|.+.|+++.+++.| ++.++||.||.|||||--+++|+.+|. .|.+..|.+..|.
T Consensus 250 cfvsa--------------nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 250 CFVSA--------------NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred Eeeec--------------CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 11100 0123699999999999998 899999999999999999999999986 7888899999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-C
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-K 508 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~ 508 (1395)
.+|+|++++| .|..|++|.+.++ +++.++.+.+..... .+-. -..|.....+++.-. .
T Consensus 315 ----kn~kyiLsSG-~DS~vkLWEi~t~------------R~l~~YtGAg~tgrq---~~rt-qAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 315 ----KNGKYILSSG-KDSTVKLWEISTG------------RMLKEYTGAGTTGRQ---KHRT-QAVFNHTEDYVLFPDEA 373 (430)
T ss_pred ----cCCeEEeecC-CcceeeeeeecCC------------ceEEEEecCCcccch---hhhh-hhhhcCccceEEccccc
Confidence 9999999998 9999999999999 999999877432111 1111 234444555554433 5
Q ss_pred CCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYG 520 (1395)
Q Consensus 509 Dg~I~iWdl~~g 520 (1395)
.+.+.-||-+++
T Consensus 374 s~slcsWdaRta 385 (430)
T KOG0640|consen 374 SNSLCSWDARTA 385 (430)
T ss_pred cCceeeccccch
Confidence 677888987764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=255.65 Aligned_cols=278 Identities=21% Similarity=0.287 Sum_probs=213.4
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEE-eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSL-LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~-l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
|...+.|..|. +.++++|+.|++|++||..++. +.. +.||.+.|++++| ...+.+|++|+.|.+++|||+.+|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~-~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF-PSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE-ecCCCEEEEEecCCcEEeEecCCCc-
Confidence 56778888887 6789999999999999999984 444 9999999999999 6578999999999999999999998
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
|...+.+|...+.++...+ .++++|+.+..+++|....+.. +.++
T Consensus 283 -------------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~-------------------l~l~ 327 (537)
T KOG0274|consen 283 -------------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC-------------------LNLL 327 (537)
T ss_pred -------------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce-------------------EEEe
Confidence 6777778888777776544 3455555555444444343322 6778
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|.+.|+++.++ + .++++|+.||+|++||+.+++|++++.+|.+ +|+++.+. .. .++++++ .|++|++|
T Consensus 328 ~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~----~~-~~~~Sgs-~D~~IkvW 397 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVD----SE-NRLLSGS-LDTTIKVW 397 (537)
T ss_pred ccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEec----Cc-ceEEeee-eccceEee
Confidence 8899999999998 4 7999999999999999999999999999998 99999885 32 7777755 99999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIA 532 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~ 532 (1395)
|+++. ++|+.+|.+|...+ ..+...+.+|++++.|+.|++||...+. +++.+.
T Consensus 398 dl~~~-----------~~c~~tl~~h~~~v-----------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~-----~~~~~~ 450 (537)
T KOG0274|consen 398 DLRTK-----------RKCIHTLQGHTSLV-----------SSLLLRDNFLVSSSADGTIKLWDAEEGE-----CLRTLE 450 (537)
T ss_pred cCCch-----------hhhhhhhcCCcccc-----------cccccccceeEeccccccEEEeecccCc-----eeeeec
Confidence 99875 17999999998764 2234568999999999999999998865 222222
Q ss_pred eeeccccEEEEecCCCCc-CcCCCCeEEEEEcCCCcee
Q 039790 533 EFTVTMPILSLTGTTTDA-SPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 533 ~f~~~~~ils~~~~~~d~-~~s~dg~V~lWdv~t~~i~ 569 (1395)
.- ....+.++....-.. +...|+.+++||+.++...
T Consensus 451 ~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cC-CcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 21 113333333331011 1356788888888887553
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=244.29 Aligned_cols=275 Identities=10% Similarity=0.028 Sum_probs=216.2
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+|..+.+|++++.|+.|++|+++. ...++++|.+|...|..++|+.+|..+.+
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEec---------------------------CcceehhhhcchhhhhhhhccccCCeeee
Confidence 344568999999999999999541 23678899999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
++.|+.|++||+++|....-......++|+.| .+++ +.|++|+.|+.|+.||+++++. ++-+..
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~kv--------------vqeYd~ 340 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGKV--------------VQEYDR 340 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeec-CCCCCcEEEEecCCCcEEEEeccchHH--------------HHHHHh
Confidence 99999999999999965433334557899999 5555 9999999999999999999983 334456
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
|-+.+..+.|-+.+.+++.+..++.+++|+....... ......+-...-||..+|.+ .++
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-------------------k~i~~~~~hsmP~~~~~P~~-~~~ 400 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-------------------KNIADPEMHTMPCLTLHPNG-KWF 400 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc-------------------hhhcchhhccCcceecCCCC-Cee
Confidence 6777889999999998888888887777765332110 01111233346789999998 899
Q ss_pred EEEeCCCcEEEEeCCCC---ceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 393 ASASLDGTVKIWDDRKS---TPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg---~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+.-+.|..|.||.+... .....|+||.. ..-..|.|| |||++|++| +.||.+.+||.++.
T Consensus 401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS----pDG~~l~SG-dsdG~v~~wdwkt~----------- 464 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS----PDGRTLCSG-DSDGKVNFWDWKTT----------- 464 (503)
T ss_pred hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc----CCCCeEEee-cCCccEEEeechhh-----------
Confidence 99999999999986543 34456778853 155778999 999999995 59999999999988
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWd 516 (1395)
+.+..++.|..... .+.|.| ....+++++.||.|++|+
T Consensus 465 -kl~~~lkah~~~ci---------~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -KLVSKLKAHDQPCI---------GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -hhhhccccCCcceE---------EEEecCCCcceeEecccCceeEecC
Confidence 88999999865533 255544 567899999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=252.31 Aligned_cols=244 Identities=14% Similarity=0.264 Sum_probs=188.7
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--------------------------------C-------------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--------------------------------A------------- 248 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--------------------------------~------------- 248 (1395)
.|.+.|+++.||+||+|||+||.||.||||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999997654 0
Q ss_pred ----------------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 249 ----------------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 249 ----------------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
.+..|.||.+.|.+|.| +. .++|++++.|.|||+|++.... |+.++ .
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-SK-n~fLLSSSMDKTVRLWh~~~~~--------------CL~~F-~ 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-SK-NNFLLSSSMDKTVRLWHPGRKE--------------CLKVF-S 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccc-cc-CCeeEeccccccEEeecCCCcc--------------eeeEE-e
Confidence 12346799999999999 55 4689999999999999999877 45554 4
Q ss_pred CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
|.+.|+||+|+|.+..+|++|+ |+++.+|.+.. .+ +.....-.+-|++++|.||| .+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d-~~--------------------Vv~W~Dl~~lITAvcy~PdG-k~ 465 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD-KK--------------------VVDWNDLRDLITAVCYSPDG-KG 465 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCc-Ce--------------------eEeehhhhhhheeEEeccCC-ce
Confidence 6789999999997776665555 55555555432 21 22222334789999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEec--CC-----CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLR--PY-----DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~--~h-----~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
.+.|+.+|.+++|+.+..+....+. .| .+..|+.+.|.|.. ++ +.|+| . .|..|||||.+..
T Consensus 466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~~-~vLVT-S-nDSrIRI~d~~~~------- 534 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-PD-EVLVT-S-NDSRIRIYDGRDK------- 534 (712)
T ss_pred EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC-CC-eEEEe-c-CCCceEEEeccch-------
Confidence 9999999999999998877665443 11 12279999998321 22 35555 4 8999999999877
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++..|++....-.. ....|+.||++|++++.|..||||++..
T Consensus 535 -----~lv~KfKG~~n~~SQ-------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 535 -----DLVHKFKGFRNTSSQ-------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -----hhhhhhcccccCCcc-------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 788888876644322 2478899999999999999999999865
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=219.92 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=227.3
Q ss_pred eeeeCCCCCEEEEEEec---CCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAV---NRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Sp---dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+..+|...|..++||+ +|-+|+++++||.-.+-+-++|. +.+|.||.+.|++.+. ..+..+.++++.|-+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l-~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATL-NKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeec-Cchhhhhhhhcccchhhhh
Confidence 35678999999999986 89999999999998888888885 8899999999999999 7777889999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|..+|..+..+ .|...|..++|+.+..+++.+|.++-+.+++..+...
T Consensus 87 ~a~tgdelhsf---------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------- 134 (334)
T KOG0278|consen 87 DAVTGDELHSF---------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------- 134 (334)
T ss_pred hhhhhhhhhhh---------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-----------------
Confidence 99999844332 4567788999999999888888777776666544322
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
+...+.+|.+.|..+-|+..+ +.|++.+.|++||+||.++|..++++.... .|+++.++ ++|++|.++ .
T Consensus 135 --pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs----~dG~ilTia--~ 203 (334)
T KOG0278|consen 135 --PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVS----QDGRILTIA--Y 203 (334)
T ss_pred --CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeec----cCCCEEEEe--c
Confidence 256678999999999999987 789999999999999999999999998654 79999999 999988773 5
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
-+.|++||..+. ..++.++..... ....++|+..++++|+.|..+|.||+.+|.....
T Consensus 204 gssV~Fwdaksf------------~~lKs~k~P~nV----------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 204 GSSVKFWDAKSF------------GLLKSYKMPCNV----------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred CceeEEeccccc------------cceeeccCcccc----------ccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 789999999887 777777765432 2578899999999999999999999999864221
Q ss_pred cceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEcCCC
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~ 566 (1395)
+..... .|+.++.++.. ..+ .+.||+|+||.+..+
T Consensus 262 ----~nkgh~--gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 262 ----YNKGHF--GPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ----cccCCC--CceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 111122 34443333330 223 467889999987776
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=241.16 Aligned_cols=241 Identities=18% Similarity=0.285 Sum_probs=207.9
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
...|+++.|+++|.+||+|..+|.|.|||.... ....+.+ |..+|-+++| ++..+.+|+.||.|.+||++....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~- 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQH- 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchh-
Confidence 789999999999999999999999999999886 4667777 9999999999 478999999999999999998761
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+....+|...|+.+.|++++.++..+|.|+.+.+||..... +...+.
T Consensus 293 ------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------------------p~~~~~ 340 (484)
T KOG0305|consen 293 ------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------------------PKFTFT 340 (484)
T ss_pred ------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------------------ccEEEe
Confidence 122366788999999999999988888888888888763221 256777
Q ss_pred ccCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEE
Q 039790 374 KHDGEITELSMCQWLTTRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~ 450 (1395)
.|...|..++|+|....+||+|+ .|++|++||..+|..+..+.... .|.+|.|+ +.. .++.+-|..++.|.
T Consensus 341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Ws----k~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWS----KKYKELLSTHGYSENQIT 414 (484)
T ss_pred ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC--ceeeEEEc----CCCCEEEEecCCCCCcEE
Confidence 89999999999999888999976 69999999999999999987654 69999999 665 45556676788999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||++.+. +.+..+.+|...+.. ++++|||..|++|+.|.++++|++-.
T Consensus 415 lw~~ps~------------~~~~~l~gH~~RVl~---------la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 415 LWKYPSM------------KLVAELLGHTSRVLY---------LALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEecccc------------ceeeeecCCcceeEE---------EEECCCCCEEEEecccCcEEeccccC
Confidence 9999887 889999999987654 89999999999999999999999865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=225.47 Aligned_cols=251 Identities=19% Similarity=0.240 Sum_probs=211.6
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|+||...|+.+.|+++...+++++.|..||||..... +....+.|.++|+.+.. .+.|.||++++.||+..+.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~-h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL-HPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee-ccCCcEEEEecCCceEEEE
Confidence 556789999999999999999999999999999999998875 57788899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+++|. ++.... ..+..+++..||||| .||..|..++++.+|+......
T Consensus 331 d~~~g~--------------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~-------------- 381 (506)
T KOG0289|consen 331 DISSGS--------------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN-------------- 381 (506)
T ss_pred EccCCc--------------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc--------------
Confidence 999987 222222 345668899999999 5777777777777776554332
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+..|.+|.+.|..++|+.+| .|||+++.|+.|++||+|..+.+.+|.......|.++.|. ..|.+|+++|
T Consensus 382 -----~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD----~SGt~L~~~g 451 (506)
T KOG0289|consen 382 -----VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD----QSGTYLGIAG 451 (506)
T ss_pred -----cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc----CCCCeEEeec
Confidence 56788999999999999998 9999999999999999999998888886665579999998 8999999987
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|=+|++++-.+ +.|.++..+..|.+... .+.|.....++++++.|..++++.+
T Consensus 452 -~~l~Vy~~~k~~----------k~W~~~~~~~~~sg~st---------~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 -SDLQVYICKKKT----------KSWTEIKELADHSGLST---------GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -ceeEEEEEeccc----------ccceeeehhhhcccccc---------eeeecccceEEeeccchhheEEeec
Confidence 665566555433 68899999988886543 4899999999999999999888764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=231.02 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=214.8
Q ss_pred CCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
..+.|..++|+|... -+|+.+. -.+.||+..+.. +.++......|++++| ..||.+|+.|+..|.|+|||+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~f-R~DG~LlaaGD~sG~V~vfD~k~r~- 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDF-RSDGRLLAAGDESGHVKVFDMKSRV- 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEe-ecCCeEEEccCCcCcEEEeccccHH-
Confidence 347899999999543 3444443 478999988764 5557777889999999 8899999999999999999976643
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
.++.+..|...+..+.|+|.++.+++.|+|+.+++||+...... ...+
T Consensus 102 -------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-------------------~~~l 149 (487)
T KOG0310|consen 102 -------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-------------------QAEL 149 (487)
T ss_pred -------------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-------------------EEEe
Confidence 34556778899999999999999999999999999998664421 3467
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.+|++.|.|.+|+|-.+.+++|||+||+||+||++.. ..+.++. |.. +|.+|.|. |.|..++++| ...|+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~-pVe~vl~l----psgs~iasAg--Gn~vkV 221 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGC-PVESVLAL----PSGSLIASAG--GNSVKV 221 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCC-ceeeEEEc----CCCCEEEEcC--CCeEEE
Confidence 7899999999999987789999999999999999987 6777775 654 99999999 9999999977 578999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
||+.+| ++.+..+..|...+++ +.+..++..|++|+-|+.|++||+. .++.+
T Consensus 222 WDl~~G-----------~qll~~~~~H~KtVTc---------L~l~s~~~rLlS~sLD~~VKVfd~t--------~~Kvv 273 (487)
T KOG0310|consen 222 WDLTTG-----------GQLLTSMFNHNKTVTC---------LRLASDSTRLLSGSLDRHVKVFDTT--------NYKVV 273 (487)
T ss_pred EEecCC-----------ceehhhhhcccceEEE---------EEeecCCceEeecccccceEEEEcc--------ceEEE
Confidence 999976 1445555557776654 8888899999999999999999954 35678
Q ss_pred eeeeccccEEEEecCC
Q 039790 532 AEFTVTMPILSLTGTT 547 (1395)
Q Consensus 532 ~~f~~~~~ils~~~~~ 547 (1395)
..+....|++++....
T Consensus 274 ~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 274 HSWKYPGPVLSIAVSP 289 (487)
T ss_pred EeeecccceeeEEecC
Confidence 8888888998887765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=238.55 Aligned_cols=287 Identities=18% Similarity=0.175 Sum_probs=215.6
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
..+|.|||.||.|++|+... +.. + .....+..+..|.++|.++....+|+.|++++.|
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~-------------d~~-----~----~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD 94 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQ-------------DSN-----E----PSTPYIASMEHHSDWVNDIILCGNGKTLISASSD 94 (735)
T ss_pred CceEEecCCCceEEEecccc-------------ccC-----C----cccchhhhhhhhHhHHhhHHhhcCCCceEEecCC
Confidence 36799999999999999331 000 0 0112466778899999999999999999999999
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC--CCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD--EEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~--~~~~~~~~~~~i~~l~~~~~ 312 (1395)
-+|++|+...+ +..+++.|++.|.|+++...+..++||||.|+.|++||+.++.. ...+. .+..-.+..+
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-----~~t~~sl~sG 169 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-----NVTVNSLGSG 169 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-----ccccccCCCC
Confidence 99999998865 68899999999999999667888999999999999999998842 11111 1111122226
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
+...+++++.++.+. ++++|...+.+++|+-+..+. +..+.||++.|.++..+.|| +.+
T Consensus 170 ~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k-------------------imkLrGHTdNVr~ll~~dDG-t~~ 228 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK-------------------IMKLRGHTDNVRVLLVNDDG-TRL 228 (735)
T ss_pred CccceeeeecCCcce-EEEecCcccceEEeccccccc-------------------eeeeeccccceEEEEEcCCC-CeE
Confidence 778899999999884 555555555555555343321 55667999999999999999 899
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
+++|.||+||+||+...+|+.++..|+. .|+++..+ |+-.++.+|| .||.|..=|+++.. ++.
T Consensus 229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~----~sf~~vYsG~-rd~~i~~Tdl~n~~-----------~~t 291 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSS----PSFTHVYSGG-RDGNIYRTDLRNPA-----------KST 291 (735)
T ss_pred eecCCCceEEeeeccccceeeeEEeccC-ceEEEeeC----CCcceEEecC-CCCcEEecccCCch-----------hhe
Confidence 9999999999999999999999999998 89999998 8888999977 99999999998741 333
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..++.. ..+. .+.+.....-+.+++.|+.|+-|...-
T Consensus 292 lick~d-aPv~---------~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 292 LICKED-APVL---------KLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EeecCC-Cchh---------hhhhccccCCceeeeccccceecCCcc
Confidence 333221 1111 133332222235667889999997653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=229.86 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=218.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..+++||.|-+|++||+. | .+...+ ..+.+. ......|..++|++.|..|
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~--------g----Mdas~~---------~fr~l~--P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQ--------G----MDASMR---------SFRQLQ--PCETHQINSLQYSVTGDQI 229 (641)
T ss_pred eeecCCCceeeeccccceEEEEecc--------c----ccccch---------hhhccC--cccccccceeeecCCCCeE
Confidence 6677888999999999999999933 1 011110 001111 1344678899999999999
Q ss_pred EEEEcCCeEEEEECCCCce-------------EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 232 CYGLKLGNIRILNIITALR-------------SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~-------------~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.+....++|+|.+...+ ..-+||...++|.+|++.+...|+||+.||++||||+...+.
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------ 303 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------ 303 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------
Confidence 9988889999999876422 244789999999999777888999999999999999987651
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC-
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG- 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~- 377 (1395)
..-+..-+..+.....++.|.|++++..|.+++.+|.|.+|+....... ..+.+-..|..
T Consensus 304 --q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----------------p~~~vk~AH~~g 364 (641)
T KOG0772|consen 304 --QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----------------PVMKVKDAHLPG 364 (641)
T ss_pred --heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-----------------cceEeeeccCCC
Confidence 1111122223345567789999999999888888888888876332211 11455667887
Q ss_pred -CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec-----CCCeE
Q 039790 378 -EITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP-----LNREL 449 (1395)
Q Consensus 378 -~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs-----~Dg~I 449 (1395)
.|+||+||+|| ++|++-+.|+++++||++.. +++.++.+-.. ..-+.++|| |+.++|+++.+ ..|++
T Consensus 365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS----Pd~kli~TGtS~~~~~~~g~L 439 (641)
T KOG0772|consen 365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS----PDDKLILTGTSAPNGMTAGTL 439 (641)
T ss_pred CceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC----CCceEEEecccccCCCCCceE
Confidence 89999999999 89999999999999999985 67776654322 256889999 99999998643 45789
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+||..+. ..++++......+. .+.|+|.=+.|++|+.||++++|-
T Consensus 440 ~f~d~~t~------------d~v~ki~i~~aSvv---------~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 440 FFFDRMTL------------DTVYKIDISTASVV---------RCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEeccce------------eeEEEecCCCceEE---------EEeecchhhheeeecCCCceEEEE
Confidence 99999887 77777776644332 477888888888999999999985
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=236.99 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=182.0
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
++..+++++.+..+..|+.. .| ..+ +.....|... .....+.+|.+.|++++|+| ++++|++|+
T Consensus 31 d~~~~~~~n~~~~a~~w~~~--gg------~~v--~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQL--GS------TAV--LKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred CCCCcEeECCceEEEEEecC--Cc------eEE--eeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence 33556777777777777732 11 111 1112222211 11234679999999999999 899999999
Q ss_pred cCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 236 KLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.||+|+|||+.++ .+..+.+|...|.+|+| +++ +++|++|+.|++|+|||+.++. .
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~--------------~ 160 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF-HPSAMNVLASAGADMVVNVWDVERGK--------------A 160 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCe--------------E
Confidence 9999999999764 35678999999999999 555 5799999999999999999876 3
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC-eEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE-ITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~-V~slafs 385 (1395)
+..+..|...+.+++|++++..+++++.++.+.+||.... .. +..+.+|.+. +..+.|.
T Consensus 161 ~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~-------------------v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TI-------------------VSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cE-------------------EEEEecCCCCcceEEEEc
Confidence 4555677888999999999987777777788877776432 11 4556678764 4567888
Q ss_pred cCCCcEEEEEe----CCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASAS----LDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs----~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+++ .+|++++ .|+.|+|||+++. .++..+..+....+....|+ +++.+|+++|..|+.|++||+.++
T Consensus 221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d----~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD----EDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc----CCCCEEEEEEeCCCeEEEEEeeCC
Confidence 887 4565544 4799999999976 45555554443356667788 899999988866999999999987
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=215.50 Aligned_cols=324 Identities=13% Similarity=0.134 Sum_probs=228.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..++.|.||.+.|+.++.......+.+++.|.+.+||.+++| |+..+.||.+.|++|+| ++.+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf-h~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF-HNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe-ccccceEEEccCCcchHHH
Confidence 456778899999999988887789999999999999999998 78999999999999999 7889999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
...-.-..... .. ..+|.+.- .+.-+ +...-...+ ..+..-...
T Consensus 218 ~~av~~~vP~~---~a--------~~~hSsEe-E~e~s-De~~~d~d~-----------------------~~~sD~~ti 261 (481)
T KOG0300|consen 218 KAAVNWEVPSN---NA--------PSDHSSEE-EEEHS-DEHNRDTDS-----------------------SEKSDGHTI 261 (481)
T ss_pred HHhhcCcCCCC---CC--------CCCCCchh-hhhcc-ccccccccc-----------------------ccccCCcee
Confidence 84322100000 00 00000000 00000 000000000 000000112
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..++..+.+|.+.|.+..|-..| ..++++++|.+..+||+.+|.++..+.||+. ..+.++-. |..+++++++ .
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcstH----ptQrLVvTsS-r 334 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCSTH----PTQRLVVTSS-R 334 (481)
T ss_pred eeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeeccCceeccccCcch-hccccccC----CcceEEEEec-c
Confidence 23367788999999999998877 8999999999999999999999999999997 88888775 8888888865 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|.++++||++.. ...+..|.+|...+.. +.|.. +..+++|++|.+|++||+..-..
T Consensus 335 DtTFRLWDFRea-----------I~sV~VFQGHtdtVTS---------~vF~~-dd~vVSgSDDrTvKvWdLrNMRs--- 390 (481)
T KOG0300|consen 335 DTTFRLWDFREA-----------IQSVAVFQGHTDTVTS---------VVFNT-DDRVVSGSDDRTVKVWDLRNMRS--- 390 (481)
T ss_pred CceeEeccchhh-----------cceeeeecccccceeE---------EEEec-CCceeecCCCceEEEeeeccccC---
Confidence 999999999732 4677889999987654 66655 45678999999999999986432
Q ss_pred cceeeeeeeeccccE---EEEecCCCCcCcCCCCeEEEEEcCCCce-------eeecccceEEecCCCCC----eecccC
Q 039790 526 TRMDYIAEFTVTMPI---LSLTGTTTDASPDGEHIVQIYCVQTQAI-------QQYALDLSQCLPPPLEN----AELEKT 591 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~i---ls~~~~~~d~~~s~dg~V~lWdv~t~~i-------~~~~~~~~~cl~~s~d~----l~~~~s 591 (1395)
.+.......++ -...|...-.++-+.+.|+|||+....+ .++|.+.+.|.++..+. +...+.
T Consensus 391 ----plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 391 ----PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred ----cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccc
Confidence 22222222221 1112222122345678899999998765 46788889999977664 556666
Q ss_pred CCceEEEeecCC
Q 039790 592 DSNATRAFDVAN 603 (1395)
Q Consensus 592 d~~v~~iWD~~t 603 (1395)
|..+. -|.+.+
T Consensus 467 DR~v~-gW~in~ 477 (481)
T KOG0300|consen 467 DRMVA-GWKINT 477 (481)
T ss_pred cceee-eeEecc
Confidence 76665 787754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=248.83 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=225.3
Q ss_pred ccCCCCCCeEEeec--CCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 152 PTLPPPSDSTVVIP--SAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s--~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
+...|++..++||+ .|+.+++|+... +..+...++.. -...+.....|.+.|.|+.|++||.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~-----vl~~~~~~~~~-----------l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDP-----VLDEKEEKNEN-----------LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred EEecCCceeEecCCccccccceeecccc-----ccchhhhhhcc-----------cchhheeeccccCceeEEEECCCCC
Confidence 55567778899999 899999998321 11111111111 1255677888999999999999999
Q ss_pred EEEEEEcCCeEEEEECCC----------C---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 230 YICYGLKLGNIRILNIIT----------A---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~----------~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
|||+|+.|+.|.||+... | ++..+++|...|.+++| ++++.+|++++.|++|.|||..+.
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW-SPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc-CCCccEEEEecccceEEEEccccc
Confidence 999999999999999872 1 45689999999999999 899999999999999999999987
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
+ .+..+.+|...|..+.|.|-|+++.+-+.|+.+.+|.....+- . +.+....
T Consensus 162 ~--------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i------~--------k~It~pf 213 (942)
T KOG0973|consen 162 E--------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI------E--------KSITKPF 213 (942)
T ss_pred e--------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee------e--------Eeeccch
Confidence 5 6788899999999999999998777777777777776443211 1 0111000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC--CCC--------
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH--PQH-------- 436 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~--pdg-------- 436 (1395)
.-..-...+..+.||||| .+|++... -.++.|.+-.+++.-..|-||.+ ++.++.|+|..- +.+
T Consensus 214 ~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred hhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCC
Confidence 001233467899999999 88888643 34689999888888889999998 999999995421 111
Q ss_pred -cE-EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 437 -IV-LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 437 -~~-L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
.| ++++|+.|++|-||..... +.+.... .-...+. -++|++||..|++++.||+|+
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~------------RPl~vi~~lf~~SI~---------DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALP------------RPLFVIHNLFNKSIV---------DMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred cceEEEEEecCCccEEEEecCCC------------CchhhhhhhhcCcee---------eeeEcCCCCeEEEEecCCeEE
Confidence 22 6777889999999998765 3332221 1112221 399999999999999999999
Q ss_pred EEEcCCC
Q 039790 514 AIHMDYG 520 (1395)
Q Consensus 514 iWdl~~g 520 (1395)
+++++..
T Consensus 351 ~i~Fee~ 357 (942)
T KOG0973|consen 351 LIHFEEK 357 (942)
T ss_pred EEEcchH
Confidence 9999764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=212.01 Aligned_cols=269 Identities=16% Similarity=0.113 Sum_probs=205.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-----CC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-----DG 280 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-----Dg 280 (1395)
+..+-+|.||.+.|+|+.+..+.++|++|+.|.++++||+.+|+....-.....|..+.| +.+|++++.+.. .+
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F-~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDF-SFGGNLILASTDKQMGYTC 120 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEee-ccCCcEEEEEehhhcCcce
Confidence 356788999999999999999999999999999999999999975545556778999999 899998887754 46
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|++....... .. .++..+..++..++.+.|.|.+..|+++..++.|.+||.......
T Consensus 121 ~v~~fdi~~~~~~~~----s~---ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~----------- 182 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDID----SE---EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL----------- 182 (327)
T ss_pred EEEEEEccCChhhhc----cc---CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-----------
Confidence 799999986431100 01 123444556688999999999999999999999999987653221
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+.....|...|+++.|++|. .+++++|.|.+-++||+++-.+++++.... +|++.+++ |...+++
T Consensus 183 --------v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aais----P~~d~Vi 247 (327)
T KOG0643|consen 183 --------VDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAIS----PLLDHVI 247 (327)
T ss_pred --------eechhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecc--cccceecc----cccceEE
Confidence 33345688999999999998 899999999999999999999999998664 89999999 8888888
Q ss_pred EEecCCCe-EEEEECCCCCCCCC--CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 441 TGGPLNRE-LKIWASAEEEGWLL--PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 441 s~Gs~Dg~-I~IWDl~tg~~~~~--~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+|..+-. |.-=+.+.+ ... ..+.--.+.+..+++|-+++.. ++|+|+|...++|+.||.|++.++
T Consensus 248 lgGGqeA~dVTTT~~r~G--KFEArFyh~i~eEEigrvkGHFGPINs---------vAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAG--KFEARFYHLIFEEEIGRVKGHFGPINS---------VAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ecCCceeeeeeeeccccc--chhhhHHHHHHHHHhccccccccCcce---------eEECCCCcccccCCCCceEEEEEe
Confidence 87744321 111111111 000 0000011335567788777654 999999999999999999999988
Q ss_pred CC
Q 039790 518 DY 519 (1395)
Q Consensus 518 ~~ 519 (1395)
+.
T Consensus 317 d~ 318 (327)
T KOG0643|consen 317 DS 318 (327)
T ss_pred cc
Confidence 65
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=216.75 Aligned_cols=232 Identities=18% Similarity=0.235 Sum_probs=192.7
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~D 237 (1395)
..+++++.||.+|+||.- ....+|..|+.|...|.++.|+. ++..+++++.|
T Consensus 74 ~~~~~a~GDGSLrl~d~~---------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLT---------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred ceEEEEecCceEEEeccC---------------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 677788888888888833 12368899999999999999998 56678888999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
|+|++|+...+ .+.+|.||...|+..+|++...++|++++.||++++||++... + ...+..|...
T Consensus 127 ~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----------k----~~~i~ah~~E 192 (311)
T KOG0277|consen 127 GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----------K----FMSIEAHNSE 192 (311)
T ss_pred CceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----------c----eeEEEeccce
Confidence 99999999886 5889999999999999988889999999999999999998643 1 1225567788
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
+.++.|+.....++++|..++.++.|+.+..+ .++..+.+|.-.|..++|||....+|++++
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------------------TPLFELNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhcc------------------ccceeecCCceEEEEEecCcchhhHhhhcc
Confidence 99999999999998888877666665544322 236777899999999999999878999999
Q ss_pred CCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 397 LDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.|-++||||...+ .++.+...|.. -|..+.|++ -+..+++++| +|+.++||+.
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~---~~~~~vAs~g-WDe~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSL---FDPGQVASTG-WDELLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccce-EEecccccc---ccCceeeecc-cccceeeecc
Confidence 9999999998854 66778888876 999999982 2567888888 9999999984
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=218.18 Aligned_cols=285 Identities=13% Similarity=0.132 Sum_probs=233.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..++|++.+|++|+.||.|.+|+.. . |++...+....-..|--+.+.|.|+.|+.|...|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~--~------------------GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYT--T------------------GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhc--c------------------chhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 5678889999999999999999932 1 2222222223334455678999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|+|+.||.|+||.+.+| |++.|. .|+..|+|+.| +.|+..+++++.|.+|||.-+++|+ +++-
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK--------------~LKE 343 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF-SRDNSQILSASFDQTVRIHGLKSGK--------------CLKE 343 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE-ccCcchhhcccccceEEEeccccch--------------hHHH
Confidence 99999999999999998 566665 89999999999 9999999999999999999999999 4556
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|...|+...|.++|.+++.+++++.+.+|+.....-...| ...+.+..|+++-.-|.++
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf------------------k~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF------------------KPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc------------------cCCCCcccceeEEEcCCCC
Confidence 6789999999999999999999998888888876443211111 1124667899999989888
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
..++.|...++|.|-++ .|+.+++|..- .+....+.+.+ |.|.|+.+.| .|+.++.|.+.+|
T Consensus 406 eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lS----pkGewiYcig-ED~vlYCF~~~sG---------- 469 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILS----PKGEWIYCIG-EDGVLYCFSVLSG---------- 469 (508)
T ss_pred ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEec----CCCcEEEEEc-cCcEEEEEEeecC----------
Confidence 89999999999999996 47788887632 12256677788 9999999998 9999999999998
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+..+++..|...+.. +...|..++|++-+.||.+++|.
T Consensus 470 --~LE~tl~VhEkdvIG---------l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 --KLERTLPVHEKDVIG---------LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --ceeeeeecccccccc---------cccCcccchhhhhcccchhhhcC
Confidence 889999988876644 88889999999999999999995
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=241.61 Aligned_cols=273 Identities=13% Similarity=0.150 Sum_probs=201.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcC------CCCC---ee-----ee-------Cc-e----EEEEEeccCCC------
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKV------PKGR---HL-----IG-------NH-S----VYDIDVRLDGE------ 199 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~s------p~Gr---~L-----~G-------~~-~----v~~v~~~~~G~------ 199 (1395)
.-+++++.+||+||.|+.||+|.+.. ..+. .. .+ .. . .-.........
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 55677889999999999999999643 0000 00 00 00 0 00000000000
Q ss_pred ccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 200 VQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 200 ~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....+..+++..|.||.+.|.++.||.++ +|++++.|.+||+|++..........|.+.|+||+|++-|.+||++|+.|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccc
Confidence 11145668899999999999999999876 78999999999999999875444556999999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.||||++...+ +....+-...|+.+||.|+|+..+++...|.++.++.....-...+.
T Consensus 432 ~KvRiWsI~d~~---------------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~------ 490 (712)
T KOG0283|consen 432 GKVRLWSISDKK---------------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH------ 490 (712)
T ss_pred cceEEeecCcCe---------------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee------
Confidence 999999999765 33445556889999999999999999889888888775432110000
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~ 438 (1395)
-.....+.. .|. .|+.+.|.|.....++..+.|..|||||.++..++..|+|+.. ..-....|+ .||++
T Consensus 491 ----I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs----~Dgk~ 560 (712)
T KOG0283|consen 491 ----IRLHNKKKK-QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS----SDGKH 560 (712)
T ss_pred ----EeeccCccc-cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc----cCCCE
Confidence 000001111 233 8999999987766677888999999999999999999997653 244677898 89999
Q ss_pred EEEEecCCCeEEEEECCCC
Q 039790 439 LITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++++ .|..|+||++...
T Consensus 561 IVs~s-eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 561 IVSAS-EDSWVYIWKNDSF 578 (712)
T ss_pred EEEee-cCceEEEEeCCCC
Confidence 99977 9999999998654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-23 Score=237.44 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=201.5
Q ss_pred cCCCEEEEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 226 VNRNYICYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++++||++||.||.|++|++..- ....+..|.++|+++.. ..+++.|+||+.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL-~~~~~tlIS~SsDtTVK~W~~~~~~------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL-CGNGKTLISASSDTTVKVWNAHKDN------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh-hcCCCceEEecCCceEEEeecccCc-------
Confidence 47789999999999999998652 36678899999999999 7888999999999999999998763
Q ss_pred cccceEEEEEEecCCCCCccEEEE-eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCW-HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~-sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
..|+.+++.|.++|.|+++ .++...++.+|.++.|++||.........-+.+ ...-.....|+..
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---------~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN---------NVTVNSLGSGPKD 172 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc---------ccccccCCCCCcc
Confidence 1367888999999999999 555555556666888888887543210000000 0010112228999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.|++++.++.| ..|++|+..+.|++||.++++.+..++||.. -|..|..+ .||..+++++ .||+|++||+...
T Consensus 173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~----dDGt~~ls~s-SDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVN----DDGTRLLSAS-SDGTIRLWDLGQQ 245 (735)
T ss_pred ceeeeecCCcc-eEEEecCcccceEEeccccccceeeeecccc-ceEEEEEc----CCCCeEeecC-CCceEEeeecccc
Confidence 99999999998 8999999999999999999999999999998 99999999 9999999976 8999999999888
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|+.++..|...+. .+..+++=..+.+|+.||.|+.-|+..
T Consensus 246 ------------rCl~T~~vH~e~VW---------aL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 246 ------------RCLATYIVHKEGVW---------ALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------------ceeeeEEeccCceE---------EEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999987654 477788889999999999999999876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=224.11 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=208.4
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC-----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA-----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~-----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
-.|.+.|+.+.+-| +..+||+++..+.|.|||...- .-..|.||...=++|+|+....-.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35889999999988 4567788889999999998753 12378999998999999666677899999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++||+..... .+..+.....+.+|+..|..++|++....+|++..+++.+.+|+.+...
T Consensus 201 ~i~lwdi~~~~~-------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------ 261 (422)
T KOG0264|consen 201 TICLWDINAESK-------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------ 261 (422)
T ss_pred cEEEEecccccc-------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------
Confidence 999999997652 1345567788899999999999999988887777766655555544211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCc-E
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHI-V 438 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~ 438 (1395)
.+..+...+|++.|+|++|+|.+..+|||||.|++|++||+|+- ++++++.+|.. .|.+|.|+ |+.. .
T Consensus 262 -----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WS----Ph~etv 331 (422)
T KOG0264|consen 262 -----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWS----PHNETV 331 (422)
T ss_pred -----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeC----CCCCce
Confidence 12245667899999999999999899999999999999999985 78999999998 99999999 6655 4
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCc--ccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEE
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDI--ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAI 515 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~--~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iW 515 (1395)
|+++| .|+.+.|||+..-.+...+.+. ....++..--+|...+.. +.|.|+-. .|++.+.||.+.||
T Consensus 332 LASSg-~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D---------fsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 332 LASSG-TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD---------FSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred eEecc-cCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc---------ccCCCCCCeEEEEecCCceEEEe
Confidence 55555 9999999999876444433332 333455555666665533 66667665 56778899999999
Q ss_pred EcC
Q 039790 516 HMD 518 (1395)
Q Consensus 516 dl~ 518 (1395)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 976
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=230.52 Aligned_cols=262 Identities=17% Similarity=0.251 Sum_probs=206.8
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEE-EEEec-CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLG-RQIAV-NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~-va~Sp-dg~~LasGs~ 236 (1395)
..++++|.||++++|+-. |+.. .....+.+|.+.|.+ ++|.+ ++-.|++|+.
T Consensus 26 ~~i~s~sRd~t~~vw~~~---~~~~-----------------------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKK---GKQY-----------------------LETHAFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eEEeecCCCCceeeeecc---Cccc-----------------------ccceecccCcceeeccceeccccCcceEeecc
Confidence 468999999999999922 1111 223456667777777 77764 5567999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
|++|.+|..... ...+|+||...|+++.. ..++. ++|||.|.+++||.+..-. ....+|..
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~-~~~~~-~iSgSWD~TakvW~~~~l~----------------~~l~gH~a 141 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSI-GEDGT-LISGSWDSTAKVWRIGELV----------------YSLQGHTA 141 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeec-CCcCc-eEecccccceEEecchhhh----------------cccCCcch
Confidence 999999999987 58899999999999997 55655 9999999999999987532 33567888
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.|..+..-|.+ .+++|+.++.+++|... + -+++|.+|.+.|+.+++-+++ .|+||
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~~--~-------------------~l~tf~gHtD~VRgL~vl~~~--~flSc 196 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKGG--T-------------------LLKTFSGHTDCVRGLAVLDDS--HFLSC 196 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccCC--c-------------------hhhhhccchhheeeeEEecCC--CeEee
Confidence 89999988887 44455555555554421 1 167888999999999999874 69999
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
+.||.|++||+ +|.++.++.||.. .|+++... .++..++++| .|++++||+.. .|.+.+
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~----~~~~~Ivs~g-EDrtlriW~~~--------------e~~q~I 255 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMA----LSDGLIVSTG-EDRTLRIWKKD--------------ECVQVI 255 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccce-EEEEEEec----CCCCeEEEec-CCceEEEeecC--------------ceEEEE
Confidence 99999999998 8999999999998 99999976 7888999988 99999999864 889998
Q ss_pred eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 476 ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 476 ~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
......+.+ +.+-.+|.+ ++|+.||.||||.....
T Consensus 256 ~lPttsiWs---------a~~L~NgDI-vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 256 TLPTTSIWS---------AKVLLNGDI-VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ecCccceEE---------EEEeeCCCE-EEeccCceEEEEEeccc
Confidence 877655433 555566665 56778999999998754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=206.81 Aligned_cols=251 Identities=15% Similarity=0.200 Sum_probs=202.6
Q ss_pred cccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCC--EEEEEECC
Q 039790 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVH--LLASASVD 279 (1395)
Q Consensus 203 ~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~--~LaSgs~D 279 (1395)
.+...++..|..|.+.|+++++ +|.|+|+|+.|-+|+|||+... ++..+-.|.+.|+++.| .++-. .|++|+.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F-~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKF-YPPLSKSHLLSGSDD 106 (362)
T ss_pred ceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEe-cCCcchhheeeecCC
Confidence 4456778899999999999765 5899999999999999999987 57788889999999999 44443 89999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.|.+|+..... ++..+..|...|+.+..||.+..-+++|.+..+..|+..+.....
T Consensus 107 G~i~iw~~~~W~--------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--------- 163 (362)
T KOG0294|consen 107 GHIIIWRVGSWE--------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--------- 163 (362)
T ss_pred CcEEEEEcCCeE--------------EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---------
Confidence 999999998654 677888888889999999999888888888877777765433221
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+.. -....+.|.|+|.| .+|+.++.+ .|-||.+.+......+.... .+.|+.|. ++.+|
T Consensus 164 ---------v~~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-----~~~~L 222 (362)
T KOG0294|consen 164 ---------VLN---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIENPK--RILCATFL-----DGSEL 222 (362)
T ss_pred ---------eec---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhccc--cceeeeec-----CCceE
Confidence 111 12233449999999 677777665 49999998887777766442 68999995 88899
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++| .|+.|++||..+. .+...|.+|...+... ...-.+++.+|++.+.||.|++||++.
T Consensus 223 ~vG~-d~~~i~~~D~ds~------------~~~~~~~AH~~RVK~i-------~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 223 LVGG-DNEWISLKDTDSD------------TPLTEFLAHENRVKDI-------ASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEec-CCceEEEeccCCC------------ccceeeecchhheeee-------EEEecCCceEEEEeccCceEEEEEccc
Confidence 9988 8999999999887 8999999999877541 123467889999999999999999987
Q ss_pred C
Q 039790 520 G 520 (1395)
Q Consensus 520 g 520 (1395)
.
T Consensus 283 ~ 283 (362)
T KOG0294|consen 283 E 283 (362)
T ss_pred c
Confidence 4
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=219.61 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=217.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEecc--CCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRG--HTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
.|...|+.+.+|...+++++|++ |.|+|||+... .+..|.. -...|.++.. .+||+.|++||+-.+|.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-LPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEe-cCCCceEEeccccceeeeeec
Confidence 48888899999999999999987 88999999763 2333322 3467889998 899999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
..... .++. .....-..+.++.+||.+..|+++.++.|.+||..+...
T Consensus 495 AapTp-------------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~------------------ 543 (705)
T KOG0639|consen 495 AAPTP-------------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL------------------ 543 (705)
T ss_pred cCCCc-------------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee------------------
Confidence 97651 0110 011123345788999999999999999999999855321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
++.|.||.+.+.||.+++|| +.|.||+.|.+||.||+|.++.+....... .|.++.++ |.+.||+.+. .+
T Consensus 544 --VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~S--QIfSLg~c----P~~dWlavGM-en 613 (705)
T KOG0639|consen 544 --VRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSS--QIFSLGYC----PTGDWLAVGM-EN 613 (705)
T ss_pred --eecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhh--hheecccC----CCccceeeec-cc
Confidence 67889999999999999999 899999999999999999998777665433 69999999 9999999966 89
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.+.|...... ....+..|.+.+. .+.|.+.|+|+++.++|+.+..|...+|.
T Consensus 614 s~vevlh~skp-------------~kyqlhlheScVL---------SlKFa~cGkwfvStGkDnlLnawrtPyGa----- 666 (705)
T KOG0639|consen 614 SNVEVLHTSKP-------------EKYQLHLHESCVL---------SLKFAYCGKWFVSTGKDNLLNAWRTPYGA----- 666 (705)
T ss_pred CcEEEEecCCc-------------cceeecccccEEE---------EEEecccCceeeecCchhhhhhccCcccc-----
Confidence 99888887654 2233455555443 48999999999999999999999998875
Q ss_pred ceeeeeeeeccccEEEEecCCCCcC---cCCCCeEEEEEc
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDAS---PDGEHIVQIYCV 563 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~---~s~dg~V~lWdv 563 (1395)
.|.......++++.+++..+.+ .+||....||.|
T Consensus 667 ---siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 ---SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---ceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3444445568888888874444 477877888865
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-22 Score=229.76 Aligned_cols=302 Identities=14% Similarity=0.160 Sum_probs=224.3
Q ss_pred CeEEeecCCCCEEEEeCcC-CCCCee----eeCceEEEEEeccCCCccC-------cccccceeeeeCCCCCEEEEEEec
Q 039790 159 DSTVVIPSAPPVRLRSSKV-PKGRHL----IGNHSVYDIDVRLDGEVQP-------QLEVTPITKYISDPGLVLGRQIAV 226 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~s-p~Gr~L----~G~~~v~~v~~~~~G~~~~-------~~~~~~i~~l~~h~~~V~~va~Sp 226 (1395)
.-+.|++.|++||+|++.+ -+|..+ ...+.+-++.. +++.+. -.+......+ +....+.+++++|
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~--d~~~q~~~d~~~~~fdka~~s~~-d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE--DSTQQIMHDASAGIFDKALVSTC-DSRFGFRALAVSP 469 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccc--cCchhhhhhccCCcccccchhhc-CcccceEEEEECC
Confidence 5689999999999999654 122222 11111111111 111111 1111222222 3446799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 227 NRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
+|++||+|..-|+||||++..- ....+..|...|.|+.|+-++ .++|++++.|+.|.|||+...-
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny------------ 537 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY------------ 537 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc------------
Confidence 9999999999999999999875 455778899999999994443 4689999999999999998643
Q ss_pred EEEEEEecCCCCCccEEEEeCCC--CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHK--QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~--~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
..++++.+|...|++|.|-..| ..++.+|.++.|..--..+.+.+..|... ..++ ....+++
T Consensus 538 -~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-------------t~t~--~ktTlYD 601 (1080)
T KOG1408|consen 538 -DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-------------TQTL--SKTTLYD 601 (1080)
T ss_pred -chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc-------------cccc--ccceEEE
Confidence 2456778899999999998877 45666666665544333333333222110 1111 2346899
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
++..|.. .++++++.|+.|+|||+.+|+..+.|++ |+| ....|... |.|.||++++ .|++|.++|+-++
T Consensus 602 m~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lD----PSgiY~atSc-sdktl~~~Df~sg- 673 (1080)
T KOG1408|consen 602 MAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILD----PSGIYLATSC-SDKTLCFVDFVSG- 673 (1080)
T ss_pred eeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCC-ceEEEEEC----CCccEEEEee-cCCceEEEEeccc-
Confidence 9999987 7999999999999999999999999985 445 66677777 9999999988 8999999999999
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|+.+..+|+..++. +.|.+|-+.|++.+.||+|+||.+..
T Consensus 674 -----------EcvA~m~GHsE~VTG---------~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 -----------ECVAQMTGHSEAVTG---------VKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -----------hhhhhhcCcchheee---------eeecccchhheeecCCceEEEEECch
Confidence 999999999988765 99999999999999999999999875
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-22 Score=222.30 Aligned_cols=274 Identities=19% Similarity=0.193 Sum_probs=210.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+-+-.....|++++.|..|++|++.. + ....+.++.|..+.|+.+.|.++++++
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~---------------------~-----k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLG---------------------E-----KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhccc---------------------c-----hhhhhhhhhccCCCcceeeecCCCceE
Confidence 44455558899999999999999541 0 013456677788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.|+.+++|+++.. .+.+|.||++.|+++.| ......+++|+.|.+|++||+....|..+.
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-------------- 299 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV-------------- 299 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehh-hccccceeeccccchhhhhhhhhhheeccc--------------
Confidence 99999999999999987 57899999999999999 555555999999999999999987643221
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
.. ...+..|+.. ...+++|..+.-+++|+.+.... ......+ +.|+++..+.++ .
T Consensus 300 l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~-------------------~~sv~~g-g~vtSl~ls~~g-~ 354 (459)
T KOG0288|consen 300 LP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK-------------------TRSVPLG-GRVTSLDLSMDG-L 354 (459)
T ss_pred cc-cccccceEec---ceeeeecccccceEEEeccCCce-------------------eeEeecC-cceeeEeeccCC-e
Confidence 11 1222334433 23455555444455555443321 3444444 489999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCC---CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYD---GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
.|.+++.|.++++.|+++....++|.... +...+.+.|| |++.|+++|+ .||.|+||++.++
T Consensus 355 ~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS----pd~~YvaAGS-~dgsv~iW~v~tg---------- 419 (459)
T KOG0288|consen 355 ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS----PDGSYVAAGS-ADGSVYIWSVFTG---------- 419 (459)
T ss_pred EEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC----CCCceeeecc-CCCcEEEEEccCc----------
Confidence 88888999999999999998888876321 2258999999 9999999955 9999999999999
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
+|...+...+... -+.++.|++.|..|++++.++.+.+|
T Consensus 420 --KlE~~l~~s~s~~-------aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 420 --KLEKVLSLSTSNA-------AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --eEEEEeccCCCCc-------ceEEEEEcCCCchhhcccCCcceEec
Confidence 9998888766541 12359999999999999999999999
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=216.47 Aligned_cols=274 Identities=14% Similarity=0.230 Sum_probs=220.9
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE-----------------Ee--ccCCCCeEEEEEeeCC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS-----------------LL--RGHTQRVTDMAFFAED 269 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~-----------------~l--~~H~~~V~slaf~s~d 269 (1395)
+..+..|.-.|.||++++|++++++++.||+|.=|++.++... .. ++|...|.+++. ++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-S~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-SSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-cCC
Confidence 6778899999999999999999999999999999999886311 01 378889999999 999
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
|.||++|+.|..|.||+.++.+ .++.+.+|.+.|.+++|......+++++.+..+.+|.......
T Consensus 214 gkylatgg~d~~v~Iw~~~t~e--------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~- 278 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLE--------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY- 278 (479)
T ss_pred CcEEEecCCCceEEEecCcccc--------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-
Confidence 9999999999999999999987 5566788999999999999888999999999999998755332
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
+..+.||.+.|..|....-. +.+..|+.|+++++|++..- ....|.+|.+ .+-|++|-
T Consensus 279 -------------------vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee-sqlifrg~~~-sidcv~~I 336 (479)
T KOG0299|consen 279 -------------------VETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE-SQLIFRGGEG-SIDCVAFI 336 (479)
T ss_pred -------------------HHHHhCCccceeeechhccc-ceEEeccccceeEEEecccc-ceeeeeCCCC-CeeeEEEe
Confidence 45677899999999887765 66666779999999999443 3446778887 99999995
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc---ccccccceEEEEeCCCCEEEEE
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR---LEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~---~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
+..+++++ |.||.|.+|++.+. +.+.+....++.... ....||...++..+...++++|
T Consensus 337 -----n~~HfvsG-SdnG~IaLWs~~KK------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 337 -----NDEHFVSG-SDNGSIALWSLLKK------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred -----cccceeec-cCCceEEEeeeccc------------CceeEeeccccccCCccccccccceeeeEecccCceEEec
Confidence 77788885 59999999999887 777776654433322 1233677889999999999999
Q ss_pred eCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 507 AKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 507 s~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
+.+|.|++|.++.|- ..+..+.++...+-+.+
T Consensus 399 S~~G~vrLW~i~~g~----r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 399 SWSGCVRLWKIEDGL----RAINLLYSLSLVGFVNS 430 (479)
T ss_pred CCCCceEEEEecCCc----cccceeeecccccEEEE
Confidence 999999999998863 24445555544433333
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=219.56 Aligned_cols=317 Identities=18% Similarity=0.210 Sum_probs=214.5
Q ss_pred CCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE-EEecCCCCCccEEEEe
Q 039790 245 IITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI-QILADGDSVHPRVCWH 323 (1395)
Q Consensus 245 ~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l-~~~~~~~~~v~~v~~s 323 (1395)
+-......+.+|+..|.++++ .+.|..|+||+.|.+|++||+...... ...+ ++.......+.++.|+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDAS----------MRSFRQLQPCETHQINSLQYS 223 (641)
T ss_pred CCccceEeccCCceEEEEeee-cCCCceeeeccccceEEEEeccccccc----------chhhhccCcccccccceeeec
Confidence 333455678899999999999 899999999999999999999864310 0011 2223345678899999
Q ss_pred CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 324 PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 324 p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
+.+..||++.......++|.......+ |. .-+..+..+...+||...++|.+|+|+....|+|++.||++||
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e-~~-------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVE-FS-------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeee-ee-------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 999999998888888877764432211 11 1112222255667899999999999999889999999999999
Q ss_pred EeCCCC-ceeEEecC----CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 404 WDDRKS-TPLAVLRP----YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 404 WDl~sg-~~l~tl~~----h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
||+... +.+..|+. -..-.+++++|+ +||.+|++++ .||.|.+|+.... ........-+.|
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n----rdg~~iAagc-~DGSIQ~W~~~~~---------~v~p~~~vk~AH 361 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN----RDGKLIAAGC-LDGSIQIWDKGSR---------TVRPVMKVKDAH 361 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecC----CCcchhhhcc-cCCceeeeecCCc---------ccccceEeeecc
Confidence 999764 33444431 111278999999 9999988866 9999999998543 001111222344
Q ss_pred CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc------ccEEEEecCCCCcCc
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT------MPILSLTGTTTDASP 552 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~------~~ils~~~~~~d~~~ 552 (1395)
.... -+.++.||.||++|++-+.|+++++|||+.-+.+...+......|... .-.+.++|.+ ....
T Consensus 362 ~~g~-------~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS-~~~~ 433 (641)
T KOG0772|consen 362 LPGQ-------DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS-APNG 433 (641)
T ss_pred CCCC-------ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc-ccCC
Confidence 4310 123699999999999999999999999987554332222223333332 3346677776 2223
Q ss_pred CCCCeEEEEEcCCCce-eeecccc---eEEec-CCCCCeecccCCCceEEEeecC
Q 039790 553 DGEHIVQIYCVQTQAI-QQYALDL---SQCLP-PPLENAELEKTDSNATRAFDVA 602 (1395)
Q Consensus 553 s~dg~V~lWdv~t~~i-~~~~~~~---~~cl~-~s~d~l~~~~sd~~v~~iWD~~ 602 (1395)
...|.+.+||-.+-.+ +...+.. +.|+= +...-+.++..|+.+..+||-.
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 4567899999887654 3333333 33332 4445577777787777777753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=220.91 Aligned_cols=289 Identities=16% Similarity=0.198 Sum_probs=219.6
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
+.......+..|.+.|..+.|-++...|++|+.|..|++|++..+. ..+|.|..+.|+++.| ..++.++++++.|+
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~-d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDF-DSDNKHVIAASNDK 241 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeee-cCCCceEEeecCCC
Confidence 3345566778899999999999998999999999999999998763 5688888999999999 88899999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+++|++.... ...++.+|.+.|+++.|......++.+..+..+..||..+. . |
T Consensus 242 ~~r~Wnvd~~r--------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~-----------C 295 (459)
T KOG0288|consen 242 NLRLWNVDSLR--------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-Y-----------C 295 (459)
T ss_pred ceeeeeccchh--------------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-h-----------e
Confidence 99999999877 34455678899999988877766555555566666665431 1 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+.+ -....+.+|..+. ..+++|-.|++||+||++++.++.+...+. .|++|..+ ++|..|+
T Consensus 296 --------~kt~-l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls----~~g~~lL 357 (459)
T KOG0288|consen 296 --------SKTV-LPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLS----MDGLELL 357 (459)
T ss_pred --------eccc-cccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc--ceeeEeec----cCCeEEe
Confidence 1111 1234566677662 689999999999999999999999999885 79999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .|.++++.|+++. ...++|........+ + ...+.|||++.|+++|+.||.||||++.+|
T Consensus 358 sss-RDdtl~viDlRt~------------eI~~~~sA~g~k~as---D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 358 SSS-RDDTLKVIDLRTK------------EIRQTFSAEGFKCAS---D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eec-CCCceeeeecccc------------cEEEEeecccccccc---c--cceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 986 9999999999988 777777655432111 1 236899999999999999999999999987
Q ss_pred CCCCCcceeeeeeeeccccE--EEEecCCCCcC--cCCCCeEEEE
Q 039790 521 PNPASTRMDYIAEFTVTMPI--LSLTGTTTDAS--PDGEHIVQIY 561 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~~~i--ls~~~~~~d~~--~s~dg~V~lW 561 (1395)
+-+ ..+..-..+..+ ++|++.. .++ ++.++.+.+|
T Consensus 420 KlE-----~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 420 KLE-----KVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLW 458 (459)
T ss_pred eEE-----EEeccCCCCcceEEEEEcCCC-chhhcccCCcceEec
Confidence 632 223332222223 4444444 222 3456777777
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=225.70 Aligned_cols=277 Identities=11% Similarity=0.144 Sum_probs=210.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEE-EEEeeCCCCEEEEEECCCcEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTD-MAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~s-laf~s~dg~~LaSgs~DgtV~ 283 (1395)
.-+.+.+|...|..+++.. +..+++|+.||+++||+-..+. .+.+.+|.+.|.. ++|...++-.|++|+.|++|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 4467889999998877654 4479999999999999987763 4568889999888 999445566799999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+|.+.... .+.++.+|...|+++....++. +++++.|.+.++|-....
T Consensus 85 v~~~~~~~--------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l----------------- 132 (745)
T KOG0301|consen 85 VFKLSQAE--------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL----------------- 132 (745)
T ss_pred EEecCCCC--------------chhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-----------------
Confidence 99999876 6677888999887777666654 444444555555533221
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+.+|...|+++++-|.+ .++|||.|++||+|.- ++++++|.||.+ .|+.|++. + +..+++|+
T Consensus 133 -----~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD-~VRgL~vl----~-~~~flScs 197 (745)
T KOG0301|consen 133 -----VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD-CVRGLAVL----D-DSHFLSCS 197 (745)
T ss_pred -----hcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh-heeeeEEe----c-CCCeEeec
Confidence 33477899999999999975 8999999999999964 899999999998 99999997 4 44677766
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
.||.|++|++ ++ .|+.++.+|..-+++ +....++..+++++.|++++||+...
T Consensus 198 -NDg~Ir~w~~-~g------------e~l~~~~ghtn~vYs---------is~~~~~~~Ivs~gEDrtlriW~~~e---- 250 (745)
T KOG0301|consen 198 -NDGSIRLWDL-DG------------EVLLEMHGHTNFVYS---------ISMALSDGLIVSTGEDRTLRIWKKDE---- 250 (745)
T ss_pred -CCceEEEEec-cC------------ceeeeeeccceEEEE---------EEecCCCCeEEEecCCceEEEeecCc----
Confidence 9999999999 55 899999999876654 66667888999999999999999652
Q ss_pred CCcceeeeeeeecc-ccEEEEecCCC-Cc-CcCCCCeEEEEEcCC
Q 039790 524 ASTRMDYIAEFTVT-MPILSLTGTTT-DA-SPDGEHIVQIYCVQT 565 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~-~~ils~~~~~~-d~-~~s~dg~V~lWdv~t 565 (1395)
+...| ..+ ..+++.+.... |. +++.||.||||....
T Consensus 251 ---~~q~I---~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 ---CVQVI---TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ---eEEEE---ecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 22222 222 23444443320 21 245678888887654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=217.25 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=202.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~ 230 (1395)
-.||..+..+++++..+.|.+||.....+ .....-+..+-.++.+|.+.-++++|++. .-+
T Consensus 131 RymPQnp~iVAt~t~~~dv~Vfd~tk~~s------------------~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 131 RYMPQNPNIVATKTSSGDVYVFDYTKHPS------------------KPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred hhCCCCCcEEEecCCCCCEEEEEeccCCC------------------cccccccCCCceEEEeeccccccccccccccee
Confidence 45667778889999999999999321111 10001134566788899998888999984 457
Q ss_pred EEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 231 ICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|++|+.|+.|++||+... ....+.+|...|.+++|+..+..+|++++.|+.+.|||++++..
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---------- 262 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---------- 262 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC----------
Confidence 999999999999999763 35688999999999999888899999999999999999996320
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
........|...+.|+.|+|.+..+|++|+ ++++..||.++... .+..+.+|.+.|.+
T Consensus 263 --~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 263 --KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTFEGHEDEVFQ 321 (422)
T ss_pred --CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------CceeccCCCcceEE
Confidence 123455678899999999999999999988 66666666655433 37889999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCC--------------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKS--------------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg--------------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
|.|+|.....||+++.|+++.|||+..- +++..-.||.. .|..+.|+ |+..+++++-+.|+
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWn----p~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWN----PNEPWTIASVAEDN 396 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCC----CCCCeEEEEecCCc
Confidence 9999999899999999999999998641 34567779987 99999999 99999888778999
Q ss_pred eEEEEECCC
Q 039790 448 ELKIWASAE 456 (1395)
Q Consensus 448 ~I~IWDl~t 456 (1395)
.+.||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=206.30 Aligned_cols=255 Identities=19% Similarity=0.227 Sum_probs=195.7
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC------C------------------------------C-
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII------T------------------------------A- 248 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~------~------------------------------~- 248 (1395)
+.++.+|.||.+.|++++|++.+.++++++.|++.+||... . +
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 37888999999999999999999999999999999999510 0 0
Q ss_pred ----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 249 ----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 249 ----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
.+..|.+|.+.|.+..| -..|+.+++++.|.+..+||+++|. .+..+.+|+...+.++-||
T Consensus 260 tiRvPl~~ltgH~~vV~a~dW-L~gg~Q~vTaSWDRTAnlwDVEtge--------------~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDW-LAGGQQMVTASWDRTANLWDVETGE--------------VVNILTGHDSELTHCSTHP 324 (481)
T ss_pred eeeeeeeeeeccccceEehhh-hcCcceeeeeeccccceeeeeccCc--------------eeccccCcchhccccccCC
Confidence 23467899999999999 7789999999999999999999998 5677788999999999999
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 039790 325 HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIW 404 (1395)
... ++++++.+..+++|+.+. .+..+.+|.||.+.|+++.|.-++ .+++|+.|.+|+||
T Consensus 325 tQr-LVvTsSrDtTFRLWDFRe------------------aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 325 TQR-LVVTSSRDTTFRLWDFRE------------------AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVW 383 (481)
T ss_pred cce-EEEEeccCceeEeccchh------------------hcceeeeecccccceeEEEEecCC--ceeecCCCceEEEe
Confidence 876 444555555555554321 123378899999999999999875 89999999999999
Q ss_pred eCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 405 DDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 405 Dl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
|+++. .++.+++... +++.|+.+ ..+..|+.-. +++.|+|||+...+--.+| ...-.+|...
T Consensus 384 dLrNMRsplATIRtdS--~~NRvavs----~g~~iIAiPh-DNRqvRlfDlnG~RlaRlP--------rtsRqgHrRM-- 446 (481)
T KOG0300|consen 384 DLRNMRSPLATIRTDS--PANRVAVS----KGHPIIAIPH-DNRQVRLFDLNGNRLARLP--------RTSRQGHRRM-- 446 (481)
T ss_pred eeccccCcceeeecCC--ccceeEee----cCCceEEecc-CCceEEEEecCCCccccCC--------ccccccccee--
Confidence 99985 6888988654 79999998 5666777655 8899999999765110000 0011233322
Q ss_pred cccccccceEEEEeCCC--CEEEEEeCCCeEEEEEcCCC
Q 039790 484 RLEDAFFNQVVALNRAG--LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg--~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++++|..+- .-|++++.|..+.-|.++..
T Consensus 447 -------V~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 447 -------VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -------eeeeeccccCcccccccccccceeeeeEeccc
Confidence 2246665432 45778889999999998763
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=228.59 Aligned_cols=210 Identities=14% Similarity=0.216 Sum_probs=155.8
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCC-EEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVH-LLAS 275 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~-~LaS 275 (1395)
.++..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++ ....+.+|...|.+|+| ++++. +|++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf-~P~g~~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW-NPMNYYIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE-CCCCCeEEEE
Confidence 456788999999999999996 799999999999999999753 23467899999999999 67666 4679
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
|+.||+|+|||+.++. . +..+. +...+.++.|+++|..+++++.++.+.+||... +..
T Consensus 144 gS~DgtIrIWDl~tg~-----------~---~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~------ 201 (568)
T PTZ00420 144 SGFDSFVNIWDIENEK-----------R---AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEI------ 201 (568)
T ss_pred EeCCCeEEEEECCCCc-----------E---EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcE------
Confidence 9999999999999876 1 11122 345788999999998777667677777777643 221
Q ss_pred CCCccCccccccceEEEcccCCCeEE-----EEEecCCCcEEEEEeCCC----cEEEEeCCC-CceeEEecCCCCCCeeE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITE-----LSMCQWLTTRLASASLDG----TVKIWDDRK-STPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~s-----lafspdg~~~LaSgs~Dg----~IrIWDl~s-g~~l~tl~~h~~~~V~s 425 (1395)
+..+.+|.+.+.+ ..|++++ .+|++++.|+ .|+|||++. +.++..+..+....+..
T Consensus 202 -------------i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 202 -------------ASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred -------------EEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 4556778876543 3345777 6888887774 799999995 67777765443212222
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-.|. .++|.++++| +.|++|++|++..+
T Consensus 268 p~~D---~~tg~l~lsG-kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 268 PHYD---ESTGLIYLIG-KGDGNCRYYQHSLG 295 (568)
T ss_pred Eeee---CCCCCEEEEE-ECCCeEEEEEccCC
Confidence 2333 1457777765 49999999999765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=196.27 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=218.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+.||...++.+.|+.+|.+|++|++|.++.||-..+| .+.++.||++.|+|++. ..+..++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di-d~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI-DWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe-cCCcceeeeccccceeEEEEcCC
Confidence 46789999999999999999999999999999998777 47799999999999999 88899999999999999999999
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-----CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-----GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-----~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+ .+... .....|..+.|+.++..++++.. .+.+.+++....... -.
T Consensus 84 Gk--------------~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~-------------~~ 135 (327)
T KOG0643|consen 84 GK--------------QLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD-------------ID 135 (327)
T ss_pred Cc--------------EEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh-------------hc
Confidence 98 22222 23567889999999987777654 344556665433210 01
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...++..+..+...++.+-|.|-+ .+|++|..||.|.+||+++| +.+...+.|.. .|+.+.|+ +|..++++++
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s----~d~T~FiT~s 209 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSS-KINDLQFS----RDRTYFITGS 209 (327)
T ss_pred ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhcc-cccccccc----CCcceEEecc
Confidence 112356677788999999999998 89999999999999999998 45556678887 99999999 9999999965
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE--EcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI--HMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW--dl~~g~ 521 (1395)
.|.+-++||+.+. .++++|..... + .+.+++|-..+++.|+.....-+- .-+.|+
T Consensus 210 -~Dttakl~D~~tl------------~v~Kty~te~P---------v-N~aaisP~~d~VilgGGqeA~dVTTT~~r~GK 266 (327)
T KOG0643|consen 210 -KDTTAKLVDVRTL------------EVLKTYTTERP---------V-NTAAISPLLDHVILGGGQEAMDVTTTSTRAGK 266 (327)
T ss_pred -cCccceeeeccce------------eeEEEeeeccc---------c-cceecccccceEEecCCceeeeeeeecccccc
Confidence 9999999999988 89999875432 1 247788877777776644332221 122232
Q ss_pred CCCCccee-----eeeeeecc-ccEEEEecCCCCcC----cCCCCeEEEEEcCC
Q 039790 522 NPASTRMD-----YIAEFTVT-MPILSLTGTTTDAS----PDGEHIVQIYCVQT 565 (1395)
Q Consensus 522 ~~~~~~~~-----~i~~f~~~-~~ils~~~~~~d~~----~s~dg~V~lWdv~t 565 (1395)
.+. +.++ .+.++.+| +|+-++...+ ++. ..+||.|+|.-...
T Consensus 267 FEA-rFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEA-RFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hhh-hHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence 211 1111 23334444 4666665554 332 24578888875443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=205.54 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=207.2
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+.-|.+|.+|.+.|++..+..+...-|+++.|-+-+|||.-+|. ++.| .|..-|..++| +.|.++|++|+.+..+|
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af-~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAF-SQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEe-cccchhhhccchHHHhh
Confidence 345678899999999999999999999999999999999999985 4444 58999999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|||+...+. ...-+.+|.+.|..+.|+.....|+.++.++.+..||.+. +..
T Consensus 126 vfdln~p~A-------------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~-------------- 177 (334)
T KOG0278|consen 126 VFDLNRPKA-------------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTE-------------- 177 (334)
T ss_pred hhhccCCCC-------------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcE--------------
Confidence 999987651 1233567788899999999998888886666666666543 322
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
++.+. ....|+++.++++| . +++....+.|++||..+-..++.++... .|.+.... |+...++++|
T Consensus 178 -----v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lKs~k~P~--nV~SASL~----P~k~~fVaGg 243 (334)
T KOG0278|consen 178 -----VQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLKSYKMPC--NVESASLH----PKKEFFVAGG 243 (334)
T ss_pred -----EEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEeccccccceeeccCcc--cccccccc----CCCceEEecC
Confidence 33343 55679999999998 4 5555677889999999999999998775 48999997 8887777766
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.|..++.||+.++ ..+..+ ++|.+.+. ++.|+|||...++|+.||+|+||....++.
T Consensus 244 -ed~~~~kfDy~Tg------------eEi~~~nkgh~gpVh---------cVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 244 -EDFKVYKFDYNTG------------EEIGSYNKGHFGPVH---------CVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -cceEEEEEeccCC------------ceeeecccCCCCceE---------EEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999 555555 77777764 599999999999999999999999877653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=212.13 Aligned_cols=238 Identities=19% Similarity=0.262 Sum_probs=196.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
..++.+...+....+.+|+.|..+.++|...+. +.+|.||...|+++.| +++...+++++.|-.|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~-~~~~~~v~~aSad~~i~vws~~~~s---- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKF-HKDLDTVITASADEIIRVWSVPLSS---- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEe-ccchhheeecCCcceEEeecccccc----
Confidence 467777787777899999999999999999874 7799999999999999 8899999999999999999988655
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-- 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-- 373 (1395)
+......|+..|+.+..+|.|.+++.+..+++....+...... +....
T Consensus 295 ----------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--------------------lt~vs~~ 344 (506)
T KOG0289|consen 295 ----------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--------------------LTVVSDE 344 (506)
T ss_pred ----------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--------------------EEEEeec
Confidence 2344567889999999999999888888877776666543211 11111
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+.+-.+++.+|+||| .+|.+|..||.|+|||+.++..+..|.+|.+ +|.+|.|+ .+|-||++++ +|+.|++||
T Consensus 345 ~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~Fs----ENGY~Lat~a-dd~~V~lwD 417 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFS----ENGYWLATAA-DDGSVKLWD 417 (506)
T ss_pred cccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEec----cCceEEEEEe-cCCeEEEEE
Confidence 123458999999999 8999999999999999999999999999998 99999999 8999999987 999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
++.. +.+++|...... -...+.|...|.+|+.++.|=.||+++
T Consensus 418 LRKl------------~n~kt~~l~~~~--------~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 418 LRKL------------KNFKTIQLDEKK--------EVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ehhh------------cccceeeccccc--------cceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9987 666777655432 123689999999999997776666665
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=187.04 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=209.5
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC------CC----------ceEEeccCCCCeEEEEEeeCCCC
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII------TA----------LRSLLRGHTQRVTDMAFFAEDVH 271 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~------~~----------~~~~l~~H~~~V~slaf~s~dg~ 271 (1395)
.|..+ .....|..++|+|.|.+.++|+...++||.... .+ ....-+.|.+.|+|.+| +++|.
T Consensus 25 ~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-s~~ge 102 (350)
T KOG0641|consen 25 AINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-SPCGE 102 (350)
T ss_pred EEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-cCccC
Confidence 33344 356789999999999999999999999987432 21 12234568999999999 99999
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEe-CCeEEEEEcCCCC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAI-GNRILKIDSNRVG 347 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~-~~~ii~~d~~~~~ 347 (1395)
+|++|+.|.+|++..+....+.. ++. .+ -+.-|++.+..++|-.+ +..+++++. ++.-+.+-+-..+
T Consensus 103 liatgsndk~ik~l~fn~dt~~~-----~g~---dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNA-----TGH---DL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred eEEecCCCceEEEEecccccccc-----cCc---ce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 99999999999998777654211 111 11 23456778888888543 345555544 3433333222222
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEE-EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCC----
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS-MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDG---- 420 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla-fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~---- 420 (1395)
.+.+.+.||.+.|.++- |+ | .+|++|+.|.+||+||++-..++.++.. |.+
T Consensus 174 -------------------~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 174 -------------------QGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred -------------------CcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 23677889999998774 33 3 7999999999999999999999998752 322
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
..|.+|+.. |.|+.|+++- .|....+||++.+ +.++.|..|...+. ++.|+|..
T Consensus 232 savaav~vd----psgrll~sg~-~dssc~lydirg~------------r~iq~f~phsadir---------~vrfsp~a 285 (350)
T KOG0641|consen 232 SAVAAVAVD----PSGRLLASGH-ADSSCMLYDIRGG------------RMIQRFHPHSADIR---------CVRFSPGA 285 (350)
T ss_pred ceeEEEEEC----CCcceeeecc-CCCceEEEEeeCC------------ceeeeeCCCcccee---------EEEeCCCc
Confidence 379999998 9999999855 9999999999999 99999999988765 49999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEc
Q 039790 501 LFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCV 563 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv 563 (1395)
.|+++++.|..|++-|+...-. ....+-.+.+++-....+.|.......+ .+.|.++.+|-+
T Consensus 286 ~yllt~syd~~ikltdlqgdla-~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 286 HYLLTCSYDMKIKLTDLQGDLA-HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEEecccceEEEeecccchh-hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999999999999875321 1112223344433322222222211111 246778888865
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=203.23 Aligned_cols=255 Identities=19% Similarity=0.233 Sum_probs=192.0
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEEC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl 287 (1395)
+.|.+.|..+.....|++||+|+.|++|+|+.+..+ .+..|.||.++|+.++|.. .-|.+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888988888889999999999999999999875 4679999999999999943 36999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC--eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ--EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~--~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
..|... .......|+..+++|+|.|++- .|+++++++.|-++.....+..
T Consensus 88 ~~g~w~------------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w---------------- 139 (299)
T KOG1332|consen 88 ENGRWT------------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------------- 139 (299)
T ss_pred CCCchh------------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc----------------
Confidence 887621 1223456788999999988753 3444455676666655443211
Q ss_pred ccceEEEcccCCCeEEEEEecC---C----------CcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEee
Q 039790 366 INGVQLVGKHDGEITELSMCQW---L----------TTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspd---g----------~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
...+....|.-.|++++|.|- | .+.|++|+.|..|+||+..++ ..-++|.+|.+ +|+.|+|.|
T Consensus 140 -~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP 217 (299)
T KOG1332|consen 140 -TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAP 217 (299)
T ss_pred -cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhcc
Confidence 013445679999999999886 2 157999999999999998875 44556999998 999999994
Q ss_pred cCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE--EEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 431 GPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC--TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
...--..+|+++ +.||+|.||-.+.. .+.|+. +.+|. -.+..+.||..|++|+.++.
T Consensus 218 ~~gl~~s~iAS~-SqDg~viIwt~~~e--------~e~wk~tll~~f~------------~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 218 SVGLPKSTIASC-SQDGTVIIWTKDEE--------YEPWKKTLLEEFP------------DVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred ccCCCceeeEEe-cCCCcEEEEEecCc--------cCcccccccccCC------------cceEEEEEeccccEEEEecC
Confidence 322122466765 59999999987632 122321 22211 12346999999999999999
Q ss_pred CCeEEEEEcC
Q 039790 509 KNAIYAIHMD 518 (1395)
Q Consensus 509 Dg~I~iWdl~ 518 (1395)
|+.|++|.-+
T Consensus 277 dNkvtlwke~ 286 (299)
T KOG1332|consen 277 DNKVTLWKEN 286 (299)
T ss_pred CcEEEEEEeC
Confidence 9999999854
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=194.17 Aligned_cols=274 Identities=12% Similarity=0.056 Sum_probs=212.6
Q ss_pred CCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE
Q 039790 145 HQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI 224 (1395)
Q Consensus 145 ~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~ 224 (1395)
..++.+.+.+.-.+..|++++.|+++++|+++. ++.+ .--.+.+|.+.|..++|
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~--~r~~------------------------~~~~~~gh~~svdql~w 72 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER--DRFR------------------------KELVYRGHTDSVDQLCW 72 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecc--hhhh------------------------hhhcccCCCcchhhhee
Confidence 344556678888889999999999999999541 0111 11245689999999999
Q ss_pred ec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 225 AV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 225 Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
++ +...+++++.|.+|++||+..++...-...++.=..+.| +|+|.+++.++.|..|.+.|.++.+....+
T Consensus 73 ~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~~~------- 144 (313)
T KOG1407|consen 73 DPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITW-SPDGEYIAVGNKDDRITFIDARTYKIVNEE------- 144 (313)
T ss_pred CCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEE-cCCCCEEEEecCcccEEEEEecccceeehh-------
Confidence 88 668999999999999999998853333333444456788 899999999999999999999987622211
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
.....+.-++|+-++..+|.....|++.++... ..+++..+..|.....||.
T Consensus 145 --------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--------------------sLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 145 --------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--------------------SLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred --------cccceeeeeeecCCCCEEEEecCCceEEEEecc--------------------ccccccccccCCcceEEEE
Confidence 123345578999666666666665777776432 2344788889999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
|+|+| ++||+|+.|..+-+||+..--|++.|.-++= +|..|.|+ .||++|+++ |.|..|-|=++.+|
T Consensus 197 f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRldw-pVRTlSFS----~dg~~lASa-SEDh~IDIA~vetG------ 263 (313)
T KOG1407|consen 197 FDPDG-RYFATGSADALVSLWDVDELICERCISRLDW-PVRTLSFS----HDGRMLASA-SEDHFIDIAEVETG------ 263 (313)
T ss_pred ECCCC-ceEeeccccceeeccChhHhhhheeeccccC-ceEEEEec----cCcceeecc-CccceEEeEecccC------
Confidence 99999 8999999999999999999999999998885 99999999 899999995 49999999999998
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
..+..+...... ..++|+|...+|+-++.|
T Consensus 264 ------d~~~eI~~~~~t----------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 264 ------DRVWEIPCEGPT----------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ------CeEEEeeccCCc----------eeEEecCCCceeeEEecC
Confidence 555555433211 259999999999887755
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=232.05 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=224.2
Q ss_pred CCCCEEEEEEecCCCEEEEEE--cCCeEEEEECCC-------------CceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 215 DPGLVLGRQIAVNRNYICYGL--KLGNIRILNIIT-------------ALRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~-------------~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+...|..+.++|||..+|+|+ .||.++||+.+. +.+.....|.+.|+|+.| ++||.+||+|++|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-SPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-CCCCCeEeeccCc
Confidence 345689999999999999999 899999998753 134567789999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCC----cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 280 GRFFIWNITEGPDEEDK----PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~----~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.|.||+......-..+ ....-....++.++.+|+..|..++|+|++..++.++.++.|++|+.....
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-------- 162 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-------- 162 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--------
Confidence 99999998841100000 011112334667778899999999999999888888889999988875542
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEee
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLI 430 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~ 430 (1395)
.+.++.+|.+.|..+.|.|-| +|||+-+.|++|+||++.+..+.+.+.++.. ..++.+.||
T Consensus 163 ------------~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS- 228 (942)
T KOG0973|consen 163 ------------LLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS- 228 (942)
T ss_pred ------------eeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-
Confidence 168889999999999999999 8999999999999999888888888775532 267899999
Q ss_pred cCCCCCcEEEEEecCCC---eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC--------
Q 039790 431 GPHPQHIVLITGGPLNR---ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-------- 499 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-------- 499 (1395)
|||.+|++....++ ++.|.+- +.|++-..|-+|...+. ++.|+|.
T Consensus 229 ---PDG~~las~nA~n~~~~~~~IieR------------~tWk~~~~LvGH~~p~e---------vvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 229 ---PDGHHLASPNAVNGGKSTIAIIER------------GTWKVDKDLVGHSAPVE---------VVRFNPKLFERNNKN 284 (942)
T ss_pred ---CCcCeecchhhccCCcceeEEEec------------CCceeeeeeecCCCceE---------EEEeChHHhcccccc
Confidence 99999998654443 4555543 56799999999988653 3555431
Q ss_pred -----C----CEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee-eeccccEEEEe--cCCCCcCcCCCCeEEEEEcCCCc
Q 039790 500 -----G----LFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE-FTVTMPILSLT--GTTTDASPDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 500 -----g----~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~-f~~~~~ils~~--~~~~d~~~s~dg~V~lWdv~t~~ 567 (1395)
+ .++++|+.|++|-||...... -+-.+.+ |......++|. |.. -...+-||+|.++.++.++
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R-----Pl~vi~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPR-----PLFVIHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCC-----chhhhhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcchHH
Confidence 1 278899999999999975422 1222222 22222223333 443 2225789999999888765
Q ss_pred e
Q 039790 568 I 568 (1395)
Q Consensus 568 i 568 (1395)
+
T Consensus 359 l 359 (942)
T KOG0973|consen 359 L 359 (942)
T ss_pred h
Confidence 4
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=192.79 Aligned_cols=252 Identities=10% Similarity=0.102 Sum_probs=203.9
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEEC--CCcEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASV--DGRFFI 284 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~--DgtV~I 284 (1395)
+.+.|....+.|.++.|+.+|.+|++++.|.+|+|||..++ +..++..+...|..++| ....+.++.++. |.+||.
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~F-th~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACF-THHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEE-ecCCceEEEccCCCCCceEE
Confidence 33445555688999999999999999999999999999998 47788888888999999 556666666666 889999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-++.+.+ .++.+.+|...|.+++.+|.+..++.++.|+.+..||.+.. +.
T Consensus 85 Lsl~dNk--------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~c--------------- 134 (311)
T KOG1446|consen 85 LSLHDNK--------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KC--------------- 134 (311)
T ss_pred EEeecCc--------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CC---------------
Confidence 9999988 78999999999999999999988888888889888887522 11
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCC---CCCCeeEEEEeecCCCCCcEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPY---DGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h---~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+ +...-..++|.|.| -++|++...+.|++||+|.- .+..+|.-. .. ..+.|.|+ |||++|
T Consensus 135 ----qg~l--~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~-ew~~l~FS----~dGK~i 202 (311)
T KOG1446|consen 135 ----QGLL--NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA-EWTDLEFS----PDGKSI 202 (311)
T ss_pred ----ceEE--ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc-ceeeeEEc----CCCCEE
Confidence 1111 22223458999998 88999888889999999973 455555432 33 78999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+. .++.+++.|.-+| ..+.+|.++...... .-..+|+|||+++++|+.||+|.+|++++
T Consensus 203 LlsT-~~s~~~~lDAf~G------------~~~~tfs~~~~~~~~------~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 203 LLST-NASFIYLLDAFDG------------TVKSTFSGYPNAGNL------PLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEe-CCCcEEEEEccCC------------cEeeeEeeccCCCCc------ceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 9866 8899999999988 788888887654311 12588999999999999999999999988
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
|.
T Consensus 264 g~ 265 (311)
T KOG1446|consen 264 GK 265 (311)
T ss_pred Cc
Confidence 75
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=229.43 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=190.2
Q ss_pred EEEEEEec-CCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 219 VLGRQIAV-NRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 219 V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
+..|.|.. +.++||+++.+|.|.+||+... .+..|..|+..|++++|++...++|+|||.||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-- 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-- 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--
Confidence 34566664 5789999999999999999872 4668999999999999988889999999999999999999877
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...++......+..|.|+|...+.|+++.+++++..|+.+.-. +| ...+.
T Consensus 168 ------------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----------r~--------~~k~~ 217 (839)
T KOG0269|consen 168 ------------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----------RC--------EKKLT 217 (839)
T ss_pred ------------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----------hH--------HHHhh
Confidence 3344455677889999999988888888887776666543211 11 45677
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKI 451 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~I 451 (1395)
.|.+.|.|+.|+|++ .+||||+.|+.|+|||..+++.-..+.-+...+|.+|.|- |+..+.+++++ .|-.|+|
T Consensus 218 AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR----P~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR----PARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred cccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec----cCccchhhhhhccccceEEE
Confidence 899999999999977 8999999999999999987654443433455589999998 77766544332 6889999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEeCCCeEEEEEcCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||++.. +-...+|..|...+.. ++|. .|...|.++++|++|+.-.++.
T Consensus 293 WDvrRP-----------YIP~~t~~eH~~~vt~---------i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 293 WDVRRP-----------YIPYATFLEHTDSVTG---------IAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred Eeeccc-----------cccceeeeccCccccc---------eeccCCCceeeEeecCccHHHHhhhhc
Confidence 999864 3566788888876654 5553 4667888899999886555544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=210.43 Aligned_cols=247 Identities=15% Similarity=0.209 Sum_probs=199.9
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+++....+.|+++.|-.||++||.|...|.|+|||..+. .+..+.+|..+|..+.|++.++..|++|+.|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 334445588999999999999999999999999996664 4778999999999999977888899999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+.. ....+.+|.++|.+..|+|..++++++|+-++.+++|+.+.... .
T Consensus 142 ~a~--------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------------------~ 189 (487)
T KOG0310|consen 142 TAY--------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------------------R 189 (487)
T ss_pred CcE--------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------------------e
Confidence 764 23356788999999999999988887777665555555443211 0
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
+..+ .|+.+|..+.|-|.| .+||+++. ..|||||+.+| +.+..+..|.. .|+|+++. .++..|+++| .|+
T Consensus 190 v~el-nhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~----s~~~rLlS~s-LD~ 260 (487)
T KOG0310|consen 190 VVEL-NHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLA----SDSTRLLSGS-LDR 260 (487)
T ss_pred eEEe-cCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEee----cCCceEeecc-ccc
Confidence 2333 599999999999988 78998874 56999999965 55555555876 99999999 8899999977 999
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|++||+.+. +.+..+....... .+++++|+..++.|-.||.+.+-+...
T Consensus 261 ~VKVfd~t~~------------Kvv~s~~~~~pvL----------siavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 261 HVKVFDTTNY------------KVVHSWKYPGPVL----------SIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ceEEEEccce------------EEEEeeeccccee----------eEEecCCCceEEEecccceeeeehhhc
Confidence 9999998665 8888888766432 489999999999999999887765443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=200.96 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=215.3
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC----CCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD----EEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~----~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
+...+..|+..+.+.+| ++||.++++|+.|..|+|.|+...-. .+..+.-....-..++++.+|-..|+++.|||
T Consensus 104 Et~ylt~HK~~cR~aaf-s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAF-SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeee-CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567889999999999 99999999999999999999883210 00000011112235778889999999999999
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 039790 325 HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIW 404 (1395)
....++.++.++++..+|..+...... .+.|. ....|.++.|+|.| .+|+.|..-.++++|
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA-----------------~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlY 243 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRA-----------------FKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLY 243 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHH-----------------HHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEE
Confidence 998777777788888888765432111 12222 45689999999998 799999999999999
Q ss_pred eCCCCceeEEec---CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCc
Q 039790 405 DDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSS 480 (1395)
Q Consensus 405 Dl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~ 480 (1395)
|+.+-+|...-. .|.+ .|++|.|+ +.|++.++++ .||.|+|||--++ +|+.+|.. |++
T Consensus 244 dv~T~QcfvsanPd~qht~-ai~~V~Ys----~t~~lYvTaS-kDG~IklwDGVS~------------rCv~t~~~AH~g 305 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTG-AITQVRYS----STGSLYVTAS-KDGAIKLWDGVSN------------RCVRTIGNAHGG 305 (430)
T ss_pred eccceeEeeecCccccccc-ceeEEEec----CCccEEEEec-cCCcEEeeccccH------------HHHHHHHhhcCC
Confidence 999998876554 6777 99999999 9999888854 9999999998887 99999864 443
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc--------cEEEEecCCCCcC-
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM--------PILSLTGTTTDAS- 551 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--------~ils~~~~~~d~~- 551 (1395)
.. ++.+.|..+|++|++.++|..|++|.+.+|. .+.+|.+.+ ..-.|.-.. |.+
T Consensus 306 se--------vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R--------~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl 368 (430)
T KOG0640|consen 306 SE--------VCSAVFTKNGKYILSSGKDSTVKLWEISTGR--------MLKEYTGAGTTGRQKHRTQAVFNHTE-DYVL 368 (430)
T ss_pred ce--------eeeEEEccCCeEEeecCCcceeeeeeecCCc--------eEEEEecCCcccchhhhhhhhhcCcc-ceEE
Confidence 32 2378999999999999999999999999875 455555441 112233332 322
Q ss_pred -cC-CCCeEEEEEcCCCcee----eecccceEEecCCCCC-eecccCCCceEEEee
Q 039790 552 -PD-GEHIVQIYCVQTQAIQ----QYALDLSQCLPPPLEN-AELEKTDSNATRAFD 600 (1395)
Q Consensus 552 -~s-~dg~V~lWdv~t~~i~----~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD 600 (1395)
++ ..+.+.-||-.+..-. -.|-....|+.-++.+ .....+|+--.|+|=
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 23 2467888998886432 2344456677766654 333444666777883
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=195.44 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=192.0
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
++++| ....++.+|.|++||+|++.. +|.++ + +....|.+.|.+++|+-||..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~-~g~~~------------------------~-ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQN-SGQLV------------------------P-KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEec-CCccc------------------------c-hhhhccCCCeEEEEEccCCce
Confidence 34444 235677899999999999441 12211 1 233468899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC--CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV--HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg--~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
+++|+.|+.+++||+.+++...+..|.++|..+.|. +.. .+|+||+.|.+|++||.+... .+..+.
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~-----------pv~t~~ 154 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSN-----------PVATLQ 154 (347)
T ss_pred EEeeccCCceEEEEccCCCeeeeeecccceeEEEEe-cCCCcceeEecccccceeecccCCCC-----------eeeeee
Confidence 999999999999999999999999999999999994 433 489999999999999999765 222222
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+-. .++ +.+-....++++..+..|+++........ | ......-.-.+.||+...|.
T Consensus 155 LPe----RvY--a~Dv~~pm~vVata~r~i~vynL~n~~te--~----------------k~~~SpLk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 155 LPE----RVY--AADVLYPMAVVATAERHIAVYNLENPPTE--F----------------KRIESPLKWQTRCVACFQDK 210 (347)
T ss_pred ccc----eee--ehhccCceeEEEecCCcEEEEEcCCCcch--h----------------hhhcCcccceeeEEEEEecC
Confidence 211 111 12222334555666777777776432211 0 00011123458899999987
Q ss_pred CcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKS--TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
...+.|+-.|++-|..+..+ +.-.+|+.|.. ..|++|+|. |....|+++| .||++.+||-...
T Consensus 211 -~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh----P~hgtlvTaG-sDGtf~FWDkdar- 283 (347)
T KOG0647|consen 211 -DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH----PVHGTLVTAG-SDGTFSFWDKDAR- 283 (347)
T ss_pred -CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee----cccceEEEec-CCceEEEecchhh-
Confidence 56699999999999998887 44556777762 257889998 8889999999 8999999998765
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
..+.+.+.|...+. ++.|+.+|.+++-+.
T Consensus 284 -----------~kLk~s~~~~qpIt---------cc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 284 -----------TKLKTSETHPQPIT---------CCSFNRNGSIFAYAL 312 (347)
T ss_pred -----------hhhhccCcCCCccc---------eeEecCCCCEEEEEe
Confidence 55666666666654 488999888776543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=196.52 Aligned_cols=218 Identities=17% Similarity=0.281 Sum_probs=169.8
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc----------------eEEeccCCCCeEEEEEeeCCCCEEEE
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL----------------RSLLRGHTQRVTDMAFFAEDVHLLAS 275 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~----------------~~~l~~H~~~V~slaf~s~dg~~LaS 275 (1395)
.-|.+.|..+.+.+ .|+|+++|+.||.|.|||++... +..-.+|.-.|.++.|.+.|...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999987 78999999999999999998631 01224688899999999999999999
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
++.|.+++|||..+-+. .+.|
T Consensus 120 sSFDhtlKVWDtnTlQ~--------------------------a~~F--------------------------------- 140 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE--------------------------AVDF--------------------------------- 140 (397)
T ss_pred ccccceEEEeeccccee--------------------------eEEe---------------------------------
Confidence 99999999999987541 0000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+.|++-+|+|-.. .++|+|..|-.|++-|+.+|.+-+++.||.+ .|.+|.|+
T Consensus 141 ------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws---- 197 (397)
T KOG4283|consen 141 ------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS---- 197 (397)
T ss_pred ------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec----
Confidence 1233455555555321 4888899999999999999999999999998 99999999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc------cccccccceEEEEeCCCCEEEEEe
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL------RLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~------~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|...|++.+|+.||.||+||++... .|+..++.|...-. ..+.+-+ ..++|+.||.++++.+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRras-----------gcf~~lD~hn~k~~p~~~~n~ah~gkv-ngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRAS-----------GCFRVLDQHNTKRPPILKTNTAHYGKV-NGLAWTSDARYLASCG 265 (397)
T ss_pred cCceeEEEecCCCceEEEEEeeccc-----------ceeEEeecccCccCcccccccccccee-eeeeecccchhhhhcc
Confidence 8899988888899999999998653 45555655542100 0011111 2589999999999999
Q ss_pred CCCeEEEEEcCCCCCCC
Q 039790 508 KKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~~ 524 (1395)
.|..+++|+...|.+..
T Consensus 266 td~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTL 282 (397)
T ss_pred CccceEEeecccCcccc
Confidence 99999999999987643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=206.35 Aligned_cols=296 Identities=16% Similarity=0.221 Sum_probs=209.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeee-eCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY-ISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l-~~h~~~V~~va~Spdg~~ 230 (1395)
+..+++...+.+++.+++|--|++.+ |+.. -|.+... +. ....+.+...- ++|...|.++++++||+|
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~t--gk~~-----~~i~~~~---ev-~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLT--GKKD-----RYIIERD---EV-LKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhc--Cccc-----ccccccc---hh-hhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 56677778999999999999999542 2211 0111110 00 00011122111 489999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
||+|+.|..|.||+..+.. +..|.+|.+.|.+++| -...+.|++++.|++|++|++.... -+.+
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s--------------~vet 281 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF-RKGTSELYSASADRSVKVWSIDQLS--------------YVET 281 (479)
T ss_pred EEecCCCceEEEecCcccchhhcccccccceeeeee-ecCccceeeeecCCceEEEehhHhH--------------HHHH
Confidence 9999999999999999974 7789999999999999 7777889999999999999998765 2344
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|.+.|..|.....+..+-++|.|.++.+|.... .. ..++.+|.+.+-|++|-.+
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-es--------------------qlifrg~~~sidcv~~In~-- 338 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ES--------------------QLIFRGGEGSIDCVAFIND-- 338 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccc-cc--------------------eeeeeCCCCCeeeEEEecc--
Confidence 556677777776666665444444666666665521 11 3567789999999999876
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEec-CCC--C--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLR-PYD--G--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~--~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
..|++||.||.|.+|++.+.+++.+.. +|. . .||++|+.. |....+++ |+++|.||+|-+..+
T Consensus 339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i----~~sdL~as-GS~~G~vrLW~i~~g- 412 (479)
T KOG0299|consen 339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI----PGSDLLAS-GSWSGCVRLWKIEDG- 412 (479)
T ss_pred cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec----ccCceEEe-cCCCCceEEEEecCC-
Confidence 589999999999999999999988765 221 1 189999998 77777776 669999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeE-EEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAI-YAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I-~iWdl~~ 519 (1395)
....+.+..+.. .+ |+..++|+.+|.+|++|. ....+ +.|-+..
T Consensus 413 -------~r~i~~l~~ls~---------~G-fVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 413 -------LRAINLLYSLSL---------VG-FVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred -------ccccceeeeccc---------cc-EEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 111233333332 12 344788999999666653 33333 3444433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=189.44 Aligned_cols=278 Identities=16% Similarity=0.173 Sum_probs=206.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+..+..+..|++++.|.+++++|+. .++.+.++..+...|..+.|....+.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~----------------------------~g~~~~ti~skkyG~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSL----------------------------SGKQVKTINSKKYGVDLACFTHHSNTV 71 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcC----------------------------CCceeeEeecccccccEEEEecCCceE
Confidence 4556666788888888888888843 224445555666777888888888888
Q ss_pred EEEEc--CCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLK--LGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~--DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
..++. |.+||..++.+.. ++.|.||...|.+|+. +|-++.++|++.|++||+||++..+|..
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg-------------- 136 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQG-------------- 136 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEe-cCCCCeEEecccCCeEEeeEecCCCCce--------------
Confidence 87776 8999999999875 8899999999999999 7777999999999999999999776321
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
...- ..-..++|+|.|- +++++.+. .|.++|.+..+++- +.. ...-.+.....+.|.||+|
T Consensus 137 ~l~~--~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgP-------F~t--------f~i~~~~~~ew~~l~FS~d 198 (311)
T KOG1446|consen 137 LLNL--SGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGP-------FTT--------FSITDNDEAEWTDLEFSPD 198 (311)
T ss_pred EEec--CCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCC-------cee--------EccCCCCccceeeeEEcCC
Confidence 1111 1223689999985 55555554 67777776654431 100 1111134567899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC--CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~--~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
| ++|+.+...+.+++.|.-+|..+.++.++... --.+.+|+ ||+++++++. .||+|.+|+++++
T Consensus 199 G-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft----Pds~Fvl~gs-~dg~i~vw~~~tg-------- 264 (311)
T KOG1446|consen 199 G-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT----PDSKFVLSGS-DDGTIHVWNLETG-------- 264 (311)
T ss_pred C-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC----CCCcEEEEec-CCCcEEEEEcCCC--------
Confidence 9 78888889999999999999999999887642 22578898 9999999854 9999999999998
Q ss_pred cccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 466 IESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 466 ~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+..+.+. ...+ .++.|.|.-..++++ +..+-+|-...
T Consensus 265 ----~~v~~~~~~~~~~~---------~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 265 ----KKVAVLRGPNGGPV---------SCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ----cEeeEecCCCCCCc---------cccccCCceeeeeec--CceEEEEeccc
Confidence 888888874 3332 246788877777666 45677786543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=177.74 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=190.3
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------CceEEeccCCCCeEEEEEee---CCCCEEEEEE-C
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------ALRSLLRGHTQRVTDMAFFA---EDVHLLASAS-V 278 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------~~~~~l~~H~~~V~slaf~s---~dg~~LaSgs-~ 278 (1395)
.++-+.|.+.|+|.+|+++|.+|++|+.|.+|++..++. |....|.-|.+.|.+++|.. ..+.+|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 345567899999999999999999999999999987654 34557888999999999941 2355777765 4
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|+.|++-|...|. .+..+.+|.+.+ +++...++.+|++|+.+..+++|+.+.......
T Consensus 162 dc~iy~tdc~~g~--------------~~~a~sghtghi--lalyswn~~m~~sgsqdktirfwdlrv~~~v~~------ 219 (350)
T KOG0641|consen 162 DCKIYITDCGRGQ--------------GFHALSGHTGHI--LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNT------ 219 (350)
T ss_pred cceEEEeecCCCC--------------cceeecCCcccE--EEEEEecCcEEEccCCCceEEEEeeeccceeee------
Confidence 7888888988887 344555555554 333344557889999888888887665432100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
++... +--.-....|.+++..|.| ++|++|-.|....+||++.++.++.|..|.. .|.||.|+ |...|
T Consensus 220 ---l~~~~---~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfs----p~a~y 287 (350)
T KOG0641|consen 220 ---LDNDF---HDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFS----PGAHY 287 (350)
T ss_pred ---ccCcc---cCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeC----CCceE
Confidence 00000 0000123579999999998 8999999999999999999999999999997 99999999 88889
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|..|++-|+...- ...-.+.....|..... .+.|.+...-+++.+.|.++.+|.++
T Consensus 288 llt~s-yd~~ikltdlqgdl--------a~el~~~vv~ehkdk~i---------~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTCS-YDMKIKLTDLQGDL--------AHELPIMVVAEHKDKAI---------QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEec-ccceEEEeecccch--------hhcCceEEEEeccCceE---------EEEecCccceeeeccCcceEEEeccC
Confidence 99965 99999999986540 00011222333433322 27788888888999999999999864
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=206.38 Aligned_cols=282 Identities=16% Similarity=0.196 Sum_probs=202.1
Q ss_pred eeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
+..+.||.+.|.|++=+|+. ..+++|+.||.|+|||+... +..+|..|.+.|..|++ . ...++++|.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v-~--~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV-T--QTSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe-c--ccceEEecCCcceeeee
Confidence 34568999999999999977 78999999999999999886 68899999999999999 3 37799999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+.... +.++. .+..+..+.-+..+. ++++| +..|-+||.....
T Consensus 136 ~~~~p---------------~~til-g~s~~~gIdh~~~~~-~FaTc-Ge~i~IWD~~R~~------------------- 178 (433)
T KOG0268|consen 136 IDGPP---------------LHTIL-GKSVYLGIDHHRKNS-VFATC-GEQIDIWDEQRDN------------------- 178 (433)
T ss_pred ccCCc---------------ceeee-ccccccccccccccc-ccccc-CceeeecccccCC-------------------
Confidence 87521 11111 122222333322222 33322 3345555543321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
++..+.-..+.|.++.|+|-....|++|..|+.|.+||+|.+.+++.+.-.. .-+.|+|+ |.+-.++ +|+.|
T Consensus 179 -Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~Iswn----PeafnF~-~a~ED 250 (433)
T KOG0268|consen 179 -PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWN----PEAFNFV-AANED 250 (433)
T ss_pred -ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec--cccceecC----cccccee-ecccc
Confidence 2455555667899999999887899999999999999999999998776432 57899999 8554444 46699
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC--
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA-- 524 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~-- 524 (1395)
..++.||++.- ...+..+.+|.+.+.. +.|||.|.-+++|+.|.+|+||.++.+..-.
T Consensus 251 ~nlY~~DmR~l-----------~~p~~v~~dhvsAV~d---------VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY 310 (433)
T KOG0268|consen 251 HNLYTYDMRNL-----------SRPLNVHKDHVSAVMD---------VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY 310 (433)
T ss_pred ccceehhhhhh-----------cccchhhcccceeEEE---------eccCCCcchhccccccceEEEeecCCCcchhhh
Confidence 99999999865 1456667777766544 8999999999999999999999998876422
Q ss_pred -Ccceeeeeeee-ccccEEEEecCCCCcCcCCCCeEEEEEcCC
Q 039790 525 -STRMDYIAEFT-VTMPILSLTGTTTDASPDGEHIVQIYCVQT 565 (1395)
Q Consensus 525 -~~~~~~i~~f~-~~~~ils~~~~~~d~~~s~dg~V~lWdv~t 565 (1395)
..+|..+.... .....+.+.| ++|+.|++|....
T Consensus 311 htkRMq~V~~Vk~S~Dskyi~SG-------Sdd~nvRlWka~A 346 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMDSKYIISG-------SDDGNVRLWKAKA 346 (433)
T ss_pred hHhhhheeeEEEEeccccEEEec-------CCCcceeeeecch
Confidence 12222221111 1122333333 4588999997554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=207.01 Aligned_cols=265 Identities=12% Similarity=0.146 Sum_probs=205.4
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..+++|+.||.|++|++. ...++.+|..|.+.|.++.+.- ..+++++.|.
T Consensus 80 s~~aSGs~DG~VkiWnls----------------------------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS----------------------------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhhccccCceEEEEehh----------------------------hhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 788999999999999943 2256788999999999998877 6788999999
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCcc
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHP 318 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~ 318 (1395)
+|+.|.++....+++.+. ..+.+|.- ...++.++|||.+ |-|||..... .++.+.-+-..+.
T Consensus 130 tvK~wk~~~~p~~tilg~-s~~~gIdh-~~~~~~FaTcGe~--i~IWD~~R~~--------------Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGK-SVYLGIDH-HRKNSVFATCGEQ--IDIWDEQRDN--------------PVSSMSWGADSIS 191 (433)
T ss_pred ceeeeeccCCcceeeecc-cccccccc-ccccccccccCce--eeecccccCC--------------ccceeecCCCcee
Confidence 999999988767666653 35777776 5667889999974 9999997655 3333444556678
Q ss_pred EEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC
Q 039790 319 RVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 319 ~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~ 397 (1395)
++.|+|-...+|++| +++.|+++|.+.... ++.+. .+-.-+.|+|+|.+ ..|++|+.
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~P--------------------l~KVi-~~mRTN~IswnPea-fnF~~a~E 249 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASP--------------------LKKVI-LTMRTNTICWNPEA-FNFVAANE 249 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCc--------------------cceee-eeccccceecCccc-cceeeccc
Confidence 999999999888887 677788887754321 11110 22345789999966 89999999
Q ss_pred CCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 398 DGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 398 Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
|..++.||++.- .++..+.+|.. .|.+|+|+ |.|+-+++++ .|.+|+||.++.+ .....+
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfs----ptG~Efvsgs-yDksIRIf~~~~~------------~SRdiY- 310 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFS----PTGQEFVSGS-YDKSIRIFPVNHG------------HSRDIY- 310 (433)
T ss_pred cccceehhhhhhcccchhhcccce-eEEEeccC----CCcchhcccc-ccceEEEeecCCC------------cchhhh-
Confidence 999999999985 78999999987 99999999 9999999965 9999999999876 211111
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|... +.. +-++.||.|..++++|++|+.|++|.-..
T Consensus 311 -htkR-----Mq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 311 -HTKR-----MQH-VFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred -hHhh-----hhe-eeEEEEeccccEEEecCCCcceeeeecch
Confidence 1111 111 12589999999999999999999999764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=212.76 Aligned_cols=270 Identities=19% Similarity=0.246 Sum_probs=202.3
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.|+ ..+.||+|.. ..|++|+..++.+..+.. +.+.|+++.| +++|.+|+.|..+|.|.|||..+.+
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~w-s~~G~~LavG~~~g~v~iwD~~~~k--------- 250 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKW-SPDGSHLAVGTSDGTVQIWDVKEQK--------- 250 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEE-CCCCCEEEEeecCCeEEEEehhhcc---------
Confidence 5677 4567887764 589999999997554433 4889999999 9999999999999999999999876
Q ss_pred cceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
.+..+.. |...|-+++|. +..+..+..++.|+.+|.+..... ...+.+|...|
T Consensus 251 -----~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-------------------~~~~~~H~qeV 304 (484)
T KOG0305|consen 251 -----KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-------------------VSTLQGHRQEV 304 (484)
T ss_pred -----ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-------------------hhhhhccccee
Confidence 2333344 78888999998 333444445666666666443221 12367899999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEE-ecCCCeEEEEECCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITG-GPLNRELKIWASAEE 457 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~-Gs~Dg~I~IWDl~tg 457 (1395)
..+.|++|+ .+||+|+.|+.+.|||.....++..+..|.+ .|.+++|+ |-. ..||+| |+.|++|++||..++
T Consensus 305 CgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awc----P~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 305 CGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWC----PWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeC----CCccCceEEcCCCcccEEEEEEcCCC
Confidence 999999999 8999999999999999988999999999998 99999999 543 455554 457999999999998
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE--EeCCCeEEEEEcCCCCCCCCcceeeeeeee
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~ 535 (1395)
.++..+.... .++.+.|++..+-|++ |..++.|.||++.+ +..+..+.
T Consensus 379 ------------~~i~~vdtgs----------QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------~~~~~~l~ 428 (484)
T KOG0305|consen 379 ------------ARIDSVDTGS----------QVCSLIWSKKYKELLSTHGYSENQITLWKYPS--------MKLVAELL 428 (484)
T ss_pred ------------cEecccccCC----------ceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------cceeeeec
Confidence 7777665433 2346889888854444 33678899999876 33455555
Q ss_pred cc-ccEEEEecCCCCcC----cCCCCeEEEEEcCCC
Q 039790 536 VT-MPILSLTGTTTDAS----PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 536 ~~-~~ils~~~~~~d~~----~s~dg~V~lWdv~t~ 566 (1395)
+| ..++.+...+ |.. +++|.++++|++-..
T Consensus 429 gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 55 2344444444 432 468899999988774
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-18 Score=195.93 Aligned_cols=270 Identities=9% Similarity=0.023 Sum_probs=184.8
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE-EEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI-CYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L-asGs~D 237 (1395)
..+++++.|+.|++||... + ..+..+..+ ..+.+++|+++|+++ ++++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t--~--------------------------~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT--L--------------------------EVTRTFPVG-QRPRGITLSKDGKLLYVCASDS 52 (300)
T ss_pred cEEEEecCCCEEEEEECCC--C--------------------------ceEEEEECC-CCCCceEECCCCCEEEEEECCC
Confidence 3577889999999999431 1 223334433 335678999999977 566788
Q ss_pred CeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 238 GNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 238 G~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
+.|++||..++.. ..+..+.. +..++| +++++.++ +++.|+.|++||+.++. .+..+.. ..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~-~~~g~~l~~~~~~~~~l~~~d~~~~~--------------~~~~~~~-~~ 115 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPD-PELFAL-HPNGKILYIANEDDNLVTVIDIETRK--------------VLAEIPV-GV 115 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCC-ccEEEE-CCCCCEEEEEcCCCCeEEEEECCCCe--------------EEeEeeC-CC
Confidence 9999999998753 44544433 567888 78888665 45668999999998765 1222221 23
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE-EE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL-AS 394 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L-aS 394 (1395)
.+..++|+|++..++++..++..+.++....+.. ...+. ....+.+++|++++ .+| ++
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-------------------~~~~~-~~~~~~~~~~s~dg-~~l~~~ 174 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-------------------VDNVL-VDQRPRFAEFTADG-KELWVS 174 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-------------------EEEEE-cCCCccEEEECCCC-CEEEEE
Confidence 3567999999987777766655555544322211 11111 23346789999998 555 56
Q ss_pred EeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 395 ASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+..++.|++||+.+++++..+..+.. .....++|+ |++++++++...++.|.+||+.++
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~~~~~~~~~~~~i~v~d~~~~----------- 239 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT----KDGKTAFVALGPANRVAVVDAKTY----------- 239 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC----CCCCEEEEEcCCCCeEEEEECCCC-----------
Confidence 66799999999999988877653311 124578898 999986665446778999999876
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~ 521 (1395)
+.+..+.. ...+ ..++|+++|.+|+++ +.+|.|++||+..++
T Consensus 240 -~~~~~~~~-~~~~---------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 240 -EVLDYLLV-GQRV---------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -cEEEEEEe-CCCc---------ceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 66655432 2121 258999999998876 568999999998754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=192.69 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=178.1
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC--EEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN--YIC 232 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~--~La 232 (1395)
--.++.+++||.|.+|++||... ...+..+-.|.+.|+++.|.++-. .|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred EecceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccceEEEEecCCcchhhee
Confidence 33458899999999999999431 133455667999999999999775 899
Q ss_pred EEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+|+.||.|.||+.... ++..+++|.+.|++|++ .|.+++-++.+.|+.++.||+..|+. .+..
T Consensus 102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~---------------a~v~ 165 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRV---------------AFVL 165 (362)
T ss_pred eecCCCcEEEEEcCCeEEeeeecccccccceeEe-cCCCceEEEEcCCceeeeehhhcCcc---------------ceee
Confidence 9999999999999987 58899999999999999 88999999999999999999999871 0111
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.-....+.|.|+|.|.++++++.+ .|-+|-..... . ...+ .....+.|+.|-.. ..
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---v-----------------~~~i-~~~~r~l~~~~l~~--~~ 221 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---V-----------------FREI-ENPKRILCATFLDG--SE 221 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHh---H-----------------hhhh-hccccceeeeecCC--ce
Confidence 112233459999999876665544 44444332210 0 0111 12245777777643 69
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++|..|+.|++||..++.++..|.+|.. .|.++.+-.. |++.+|++++ .||.|+|||++..
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~--~~~~~lvTaS-SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTN--PEHEYLVTAS-SDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchh-heeeeEEEec--CCceEEEEec-cCceEEEEEcccc
Confidence 99999999999999999999999999998 9999996533 7788999987 8999999999765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=189.97 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=185.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg 228 (1395)
...+.+-+..|+|++.|++||++.+.. + | ...++.+|.||.+.|+.++|.. -|
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~-n------------------~------~s~ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRN-N------------------G------QSKLLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcC-C------------------C------CceeeeEecCCCCCeeEEeecccccC
Confidence 345566678999999999999998331 1 1 1256778999999999999987 89
Q ss_pred CEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 229 NYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.+||++++||.|.||.-.++ +.+.+..|...|++|+|.+. -|-.|++++.||.|.|.+++.... .
T Consensus 71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-----------w 139 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-----------W 139 (299)
T ss_pred cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-----------c
Confidence 99999999999999999988 46678899999999999432 256899999999999999987521 1
Q ss_pred EEEEEecCCCCCccEEEEeCC---C-----------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 305 VAIQILADGDSVHPRVCWHPH---K-----------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~---~-----------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..-++...|...+++++|.|. | .+|+.+|.++.+.+|.. ..+. |.+ -+
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~-~~~~--------------w~~---e~ 201 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF-DSDS--------------WKL---ER 201 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec-CCcc--------------hhh---hh
Confidence 123455667888999999986 3 23555555555555543 2221 111 24
Q ss_pred EEcccCCCeEEEEEecCC---CcEEEEEeCCCcEEEEeCCCC-c--eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 371 LVGKHDGEITELSMCQWL---TTRLASASLDGTVKIWDDRKS-T--PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg---~~~LaSgs~Dg~IrIWDl~sg-~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+.+|.+.|++++|.|.- ..+||+||.||+|.||-.+.- . ....++.... .++.+.|| ..|..|+.+|
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS----~sGn~LaVs~- 275 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWS----LSGNILAVSG- 275 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEe----ccccEEEEec-
Confidence 478899999999999974 248999999999999976521 1 1112233344 89999999 9999999988
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|+.|.+|--...
T Consensus 276 GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 276 GDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEEeCCC
Confidence 8999999975443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=205.08 Aligned_cols=303 Identities=13% Similarity=0.179 Sum_probs=212.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCC----CceEEeccCCCCeEEEEEeeCC----------CCEEEEEECCCcEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIIT----ALRSLLRGHTQRVTDMAFFAED----------VHLLASASVDGRFFI 284 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~----~~~~~l~~H~~~V~slaf~s~d----------g~~LaSgs~DgtV~I 284 (1395)
.-.+.|.+....|.+...|..|+|||++. |+...+--|...||++.-.+-+ ...|+||+.|++||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34567998889999999999999999987 3566777899999998763211 236999999999999
Q ss_pred EECCCCCCCCCC--cccccceE---------------------EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE
Q 039790 285 WNITEGPDEEDK--PQILGKIV---------------------VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI 341 (1395)
Q Consensus 285 Wdl~tg~~~~~~--~~~~~~~i---------------------~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~ 341 (1395)
||+..+..-..+ ..+....+ ....-.-+....+.+++.+|+++++.++...|.+.++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 999874311110 00000000 0001111234567899999999998888888888888
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCC-CceeEEecCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRK-STPLAVLRPY 418 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h 418 (1395)
+...... ...+..|...|.|+.|+.- +.++||+++.|+.|.|||+.. -.+++++.+|
T Consensus 487 ~Lq~l~~--------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 487 DLQELEY--------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred Eehhhhh--------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 8755432 3456789999999999853 235899999999999999864 4677788888
Q ss_pred CCCCeeEEEEeecC---------------------------------------------CCCCcEEEEEecCCCeEEEEE
Q 039790 419 DGHPVNCVTFLIGP---------------------------------------------HPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~---------------------------------------------~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
.. .|++|.|.... .|..++++++| .|+.|+|||
T Consensus 547 Ss-sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrnirif~ 624 (1080)
T KOG1408|consen 547 SS-SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRIFD 624 (1080)
T ss_pred cc-ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-cccceEEEe
Confidence 76 88888875111 13345777766 899999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+.++ +.++.|++..+.... .+ .+...|.|.||++.+.|.++.++|+-+|+ ++.....
T Consensus 625 i~sg------------Kq~k~FKgs~~~eG~----lI--Kv~lDPSgiY~atScsdktl~~~Df~sgE-----cvA~m~G 681 (1080)
T KOG1408|consen 625 IESG------------KQVKSFKGSRDHEGD----LI--KVILDPSGIYLATSCSDKTLCFVDFVSGE-----CVAQMTG 681 (1080)
T ss_pred cccc------------ceeeeecccccCCCc----eE--EEEECCCccEEEEeecCCceEEEEeccch-----hhhhhcC
Confidence 9888 899999886654221 11 47788999999999999999999999876 3222222
Q ss_pred eeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~ 567 (1395)
+.....-+.|...- ..+ .+|||+|.||.+-...
T Consensus 682 HsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred cchheeeeeecccc-hhheeecCCceEEEEECchhH
Confidence 22222223333332 122 4799999999886643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=193.32 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=183.7
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ce-------------------------------E
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LR-------------------------------S 251 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~-------------------------------~ 251 (1395)
+..+++|.+.|+|++|+.||++||+++.|++||||+++.- ++ .
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568899999999999999999999999999999998641 00 0
Q ss_pred Ee-----------------------ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 252 LL-----------------------RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 252 ~l-----------------------~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.+ +.|.-.|.++-. ..++.+|++|+.|.+|.+|+++ |+ .+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq--------------~L~ 222 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQ--------------LLQ 222 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cc--------------eee
Confidence 00 113334445555 5667899999999999999999 66 334
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
.+.......+..+.+|+|.+++++|..--+.+|.......+ .+ .....+..+.||...|..++|+++.
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-------~f-----qev~rvf~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-------TF-----QEVKRVFSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-------ch-----hhhhhhheeccchhheeeeeeCCCc
Confidence 44444445567899999999999999988888876433222 11 1223356788999999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCC-------CceeEEec----CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 389 TTRLASASLDGTVKIWDDRK-------STPLAVLR----PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~----~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.++|.|.||++||||+.- .+.+++.. ...+ ....+..+ |.|+.|+.+ ....|++|..+++
T Consensus 291 -~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~-~p~RL~ls----P~g~~lA~s--~gs~l~~~~se~g 362 (420)
T KOG2096|consen 291 -TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS-EPVRLELS----PSGDSLAVS--FGSDLKVFASEDG 362 (420)
T ss_pred -ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC-CceEEEeC----CCCcEEEee--cCCceEEEEcccC
Confidence 8999999999999999752 12333331 1223 44589999 999999874 4678999999888
Q ss_pred CCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 458 EGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+..-+++ .|+..+. +++|+++|+++++++ |..++++.-
T Consensus 363 ------------~~~~~~e~~h~~~Is---------~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 363 ------------KDYPELEDIHSTTIS---------SISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ------------ccchhHHHhhcCcee---------eEEecCCCcEEeeec-ceeeeeecC
Confidence 3333332 3444432 599999999999987 667888774
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=199.65 Aligned_cols=286 Identities=17% Similarity=0.249 Sum_probs=213.7
Q ss_pred cCCCEEEEE---EcCCeEEEEECCC-C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 226 VNRNYICYG---LKLGNIRILNIIT-A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 226 pdg~~LasG---s~DG~IrIWd~~~-~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
.+.+|||.. +..|...|.-+.. | ..-.+.||+++|.+++|++.+.+.|||||.|.+|.||++-.+....
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--- 118 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--- 118 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---
Confidence 466777653 2234444444432 3 2346789999999999988899999999999999999998765222
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.....+..+.+|...|-.+.|||....++.++..+..+.+|....+.. +..+. |.+
T Consensus 119 ----~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-------------------li~l~-hpd 174 (472)
T KOG0303|consen 119 ----DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-------------------LITLD-HPD 174 (472)
T ss_pred ----CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-------------------eeecC-CCC
Confidence 122345667788888999999999888877777666666666554432 34444 999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEEC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWAS 454 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl 454 (1395)
.|++++|+.|| .+|++.+.|+.|||||.++++.+..-.+|.|..-..+.|. .+|. ++++|. .++.+-|||.
T Consensus 175 ~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl----~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 175 MVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL----ASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred eEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe----ccCc-eeeeccccccccceeccCc
Confidence 99999999999 8999999999999999999999999999998788888998 7888 666662 5789999998
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
.+- +..-.+.+++...+.. .=.|.+|..+| ++|-.|+.||.|.+... .+.++|+..
T Consensus 249 ~nl---------~eP~~~~elDtSnGvl----------~PFyD~dt~ivYl~GKGD~~IRYyEit~d----~P~~hyln~ 305 (472)
T KOG0303|consen 249 NNL---------EEPIALQELDTSNGVL----------LPFYDPDTSIVYLCGKGDSSIRYFEITNE----PPFVHYLNT 305 (472)
T ss_pred ccc---------cCcceeEEeccCCceE----------EeeecCCCCEEEEEecCCcceEEEEecCC----CceeEEecc
Confidence 765 3335556666555432 12345666655 55668999999999763 468999999
Q ss_pred eeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~ 567 (1395)
|....|..-+......++ .+.....++|.+.+..
T Consensus 306 f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~~~ 340 (472)
T KOG0303|consen 306 FSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERK 340 (472)
T ss_pred cccCCccccccccccccccchHHHHHHHHHhhcce
Confidence 999988888877775555 2344556778777773
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=210.70 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=193.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-c-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-L-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|....+.++|.++|.+|++++.||.|++|+...- . -..+.-|...|.+++. ++++|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 58888999999999999999999999999997664 2 2233337788888887 66799999999999999999887
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.. .+ +....-.+.+++|+.+|..+++++.+-.|.+++...... ...
T Consensus 88 ~~--------~i------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--------------------~~~ 133 (933)
T KOG1274|consen 88 ED--------TI------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--------------------EKV 133 (933)
T ss_pred cc--------ce------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch--------------------hee
Confidence 21 11 122234567899999998777777777777776544322 577
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-------CCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-------GHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-------~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|++.|.+|.|+|.+ ++||+.+.||.|+|||+.++.+..++.+-. ...+..++|+ |+|..|+..+
T Consensus 134 lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~----Pk~g~la~~~- 207 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH----PKGGTLAVPP- 207 (933)
T ss_pred ecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeec----CCCCeEEeec-
Confidence 88999999999999999 899999999999999999998888776421 2267889998 9977777767
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|++|++|+..+. .....|....... . ...+.|+|+|.|||+++.||.|-|||+++
T Consensus 208 ~d~~Vkvy~r~~w------------e~~f~Lr~~~~ss-----~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGW------------ELQFKLRDKLSSS-----K--FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCc------------eeheeeccccccc-----c--eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8999999998655 6666665433211 1 23699999999999999999999999986
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=185.82 Aligned_cols=280 Identities=17% Similarity=0.157 Sum_probs=194.6
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEE
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWd 286 (1395)
.+|.+.|.|+.|...|+++|+|+.|++|+|||.+.. +....+.|.+.|+.|.|.+ .-|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999999999999999999999997543 4668899999999999954 4699999999999999998
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEE-EcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKI-DSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~-d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-.... .......++ ...++.+....|+.|+|.|..- ..+++++.++++++ ...... .+..|.
T Consensus 90 E~~~~----~~~~~~~Wv-~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-----------nLs~W~ 153 (361)
T KOG2445|consen 90 EQEKS----EEAHGRRWV-RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-----------NLSQWT 153 (361)
T ss_pred ecccc----cccccceeE-EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-----------ccccch
Confidence 64222 111122344 3455667788899999999643 44555555555554 433322 233344
Q ss_pred cccceE----EEcccCCCeEEEEEecCC--CcEEEEEeCC-----CcEEEEeCCCC----ceeEEecCCCCCCeeEEEEe
Q 039790 365 LINGVQ----LVGKHDGEITELSMCQWL--TTRLASASLD-----GTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 365 ~~~~~~----~l~~h~~~V~slafspdg--~~~LaSgs~D-----g~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs 429 (1395)
+...++ ....+.....|+.|++.- ..+||.|+.+ +.++||....+ ..+.++.+|.. +|+.|+|.
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wA 232 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWA 232 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeec
Confidence 433332 223466778999998642 2478888876 57999975443 45567889987 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCC-----CCCCCCc---ccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEG-----WLLPSDI---ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~-----~~~~~~~---~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
|...-.-..|++++ .|| |+||.+..... ..+..+. -.-+.+..|..|.+.+.. +.|.-.|.
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr---------v~wNmtGt 301 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR---------VRWNMTGT 301 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE---------EEEeeeee
Confidence 43222233555554 999 99999985321 1111111 112344556677766543 88999999
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 039790 502 FLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~g 520 (1395)
+|.+.|.||.||+|.-.+.
T Consensus 302 iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEeecCCCceeeehhhhhh
Confidence 9999999999999997763
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-18 Score=200.95 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=234.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~I 284 (1395)
+.+.+|.++...|+++.=+|-=..+|.|..+|+|.|++++.++ +..|+--.++|++++| ..||+ ++++|+..|.+.+
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF-rtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF-RTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe-ccCCCeeEEeccCCceEEE
Confidence 6788899999999999999999999999999999999999986 4555533599999999 77776 5677777799999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||++..+. ...+...|.+.+....|.+....++..+.|+.+..| ....+.+.
T Consensus 272 wDLe~kkl-------------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~-vfD~~dg~-------------- 323 (910)
T KOG1539|consen 272 WDLEKKKL-------------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW-VFDSGDGV-------------- 323 (910)
T ss_pred EEcCCCee-------------eeeeeccccCCcccceecCCCceEeeccCCCceeEE-EeeCCCCc--------------
Confidence 99998761 223344566777888888877766666666555444 33322221
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--------------------------------------
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD-------------------------------------- 406 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl-------------------------------------- 406 (1395)
...++.-.||..+..|+.|.-..+..+.+++.|++.+.+++
T Consensus 324 -pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 324 -PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred -chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 00134455677777777776333367777777776666654
Q ss_pred ---------------------------CCCce-eEEecCC----CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 407 ---------------------------RKSTP-LAVLRPY----DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 407 ---------------------------~sg~~-l~tl~~h----~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
++... -+++... .+..+++|+.+ +.|++.+.| ...|.|-+|++
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs----~CGNF~~IG-~S~G~Id~fNm 477 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS----FCGNFVFIG-YSKGTIDRFNM 477 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe----ccCceEEEe-ccCCeEEEEEc
Confidence 22111 1122211 11268889998 889888874 58999999999
Q ss_pred CCCCCCCCCCCcccccEEEEE---eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTL---ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl---~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
.+| ....+| ..|...+.. ++...-++.+++++.+|.+++|++.... .+
T Consensus 478 QSG------------i~r~sf~~~~ah~~~V~g---------la~D~~n~~~vsa~~~Gilkfw~f~~k~--------l~ 528 (910)
T KOG1539|consen 478 QSG------------IHRKSFGDSPAHKGEVTG---------LAVDGTNRLLVSAGADGILKFWDFKKKV--------LK 528 (910)
T ss_pred ccC------------eeecccccCccccCceeE---------EEecCCCceEEEccCcceEEEEecCCcc--------ee
Confidence 998 666666 356655543 7777778899999999999999997643 22
Q ss_pred eeeecccc----EEEEecCCCCcCcCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEeecC
Q 039790 532 AEFTVTMP----ILSLTGTTTDASPDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 532 ~~f~~~~~----ils~~~~~~d~~~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~ 602 (1395)
........ +..-...- -.++-+|-.|+++|+.|.++. ..|.....-+.|++|+ +.++..| +.+|+||++
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l-~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-~tIr~wDlp 606 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDL-LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-STIRTWDLP 606 (910)
T ss_pred eeeccCCCcceeeeeehhhh-hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-CcEEEEecc
Confidence 22222211 11111110 112357788999999999874 3467777788899987 5555555 778899999
Q ss_pred CCCcceeec
Q 039790 603 NPDGSASLE 611 (1395)
Q Consensus 603 tg~~~~~l~ 611 (1395)
||.++-.+-
T Consensus 607 t~~lID~~~ 615 (910)
T KOG1539|consen 607 TGTLIDGLL 615 (910)
T ss_pred CcceeeeEe
Confidence 999876655
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-20 Score=220.64 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=194.0
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+..|...|.|+.+-..++.+++|+.|..+-+|.+..- .+..|.+|...|.+|.| ..+..+|+.|+.||+|++||+..
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f-~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF-DTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec-CcchhhhcccccCCceeeeehhh
Confidence 45568888888888778899999999999999998764 56679999999999999 78888999999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
++ .++.+.+|...+.++.|+|.+.++..++.+..+.+||..+.+- .
T Consensus 102 Ak--------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc--------------------~ 147 (825)
T KOG0267|consen 102 AK--------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC--------------------S 147 (825)
T ss_pred hh--------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc--------------------e
Confidence 77 3445667778888999999997664444455666666654432 5
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+.+.+|...|.++.|+|+| .|+++|+.|.+++|||...|+.+..|.+|.+ .|.++.|. |..-.+.+ |+.|++|
T Consensus 148 ~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~h----p~e~Lla~-Gs~d~tv 220 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFH----PLEVLLAP-GSSDRTV 220 (825)
T ss_pred eeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccccccccccc-cccccccC----chhhhhcc-CCCCcee
Confidence 7788899999999999999 8999999999999999999999999999998 99999996 66545555 6699999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++||+++. ..+...+..... +.+..|+++|..+.+|....
T Consensus 221 ~f~dletf------------e~I~s~~~~~~~---------v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 221 RFWDLETF------------EVISSGKPETDG---------VRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeecccee------------EEeeccCCccCC---------ceeeeecCCceeeecCchhh
Confidence 99999876 444444333222 34689999999999887654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=184.34 Aligned_cols=275 Identities=19% Similarity=0.227 Sum_probs=199.7
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--C
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--N 227 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--d 227 (1395)
|-+++.+.+..+++++.|++|++||...++|. |.+ -..++.|.+.|..|.|.+ -
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~--------W~~----------------Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT--------WSC----------------TSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCc--------eEE----------------eeeEEecCCcEEEEEecCccc
Confidence 34788889999999999999999996544433 322 235667999999999987 6
Q ss_pred CCEEEEEEcCCeEEEEECCC------C----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIIT------A----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~------~----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
|+.+|+++.|++|+||.-.. + .+.++......|++|+|.+ .-|-.|++++.||+||||+.-..-....-
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 89999999999999997622 1 3557778889999999943 24678999999999999998764311110
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCC--CeEEEEEeCC------eEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHK--QEILMLAIGN------RILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~--~~lla~g~~~------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.. ...+-..+...+.+.....|+.|++.. ..+|++|.+. .+++|.....++. | ..
T Consensus 153 ~L-q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-------------w---~k 215 (361)
T KOG2445|consen 153 TL-QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-------------W---LK 215 (361)
T ss_pred hh-hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-------------e---ee
Confidence 00 000000011223345556688898642 3577777776 6676655443311 0 11
Q ss_pred eEEEcccCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC--------------------ceeEEecCCCCCCeeE
Q 039790 369 VQLVGKHDGEITELSMCQWLT---TRLASASLDGTVKIWDDRKS--------------------TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~---~~LaSgs~Dg~IrIWDl~sg--------------------~~l~tl~~h~~~~V~s 425 (1395)
+..+.+|++.|++|+|.|.-+ .+||+++.|| |+||.++.. +.+..+.+|.+ .|+.
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWr 293 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWR 293 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEE
Confidence 344568999999999999754 3899999999 999998731 24556789998 9999
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
+.|+ -.|..|.++| .||+||+|...-. ..|+|...++.....
T Consensus 294 v~wN----mtGtiLsStG-dDG~VRLWkany~---------n~~kC~sv~~~e~~~ 335 (361)
T KOG2445|consen 294 VRWN----MTGTILSSTG-DDGCVRLWKANYN---------NLWKCTSVLKAEGSV 335 (361)
T ss_pred EEEe----eeeeEEeecC-CCceeeehhhhhh---------hhheeeeEEeccCCC
Confidence 9999 8899999988 9999999987655 677899888876653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=200.94 Aligned_cols=320 Identities=11% Similarity=0.117 Sum_probs=220.7
Q ss_pred CeEEeecCCCCEEEEeCcCCC--CCee-------eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPK--GRHL-------IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~--Gr~L-------~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
..|+++|-|..||+|.+.--+ +... ..+..++-+... . ++....-..+.||.++|+++.|+|.+.
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~----i--~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE----I--QYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee----E--EEEEehhhhhcCcccceEEEEEccchh
Confidence 688999999999999843211 0000 000001000000 0 011111234569999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 230 YICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|.+++.|.++.||..... .+..+.|..+.-++.-| +++++.+++-+.-|-.++|......
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw-~~n~~~ii~~g~~Gg~hlWkt~d~~---------- 349 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW-SPNSNVIIAHGRTGGFHLWKTKDKT---------- 349 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE-cCCCCEEEEecccCcEEEEeccCcc----------
Confidence 9999999999999987654 12233455567889999 8999999999999999999933322
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-------CCc--------------------------
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-------VGK-------------------------- 348 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-------~~~-------------------------- 348 (1395)
.........+|-..|..+.|+|.|.++++++.|-+..++.... ..+
T Consensus 350 -~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 350 -FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred -ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence 1223445677888899999999999988888877665543220 000
Q ss_pred --cccccCCC----------------------------------CC------------cc----------Cc-----cc-
Q 039790 349 --GERFSAEE----------------------------------PL------------KC----------PV-----DE- 364 (1395)
Q Consensus 349 --~~~~s~~~----------------------------------~~------------~~----------~~-----~~- 364 (1395)
.+.|..+. ++ .| .+ ++
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 00000000 00 00 00 00
Q ss_pred -----cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 365 -----LINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 365 -----~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+...++.+.||...|++++.+|++ +++||++... .|++|+..+...++.+.+|+- .|+.++|| |
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FS----p 582 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFS----P 582 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEEC----C
Confidence 000123466899999999999998 8999998754 499999999999999999986 99999999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
||++|++++ .|+++.+|....+.. +. ......+.|...+ ..+.|+|++.++++++.|.+|++
T Consensus 583 dg~~LLsvs-RDRt~sl~~~~~~~~-----~e---~~fa~~k~HtRII---------WdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 583 DGRYLLSVS-RDRTVSLYEVQEDIK-----DE---FRFACLKAHTRII---------WDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred CCcEEEEee-cCceEEeeeeecccc-----hh---hhhccccccceEE---------EEcccCcccceeEEecCCceEEE
Confidence 999999988 999999999855410 00 1122245555443 35899999999999999999999
Q ss_pred EEcCCC
Q 039790 515 IHMDYG 520 (1395)
Q Consensus 515 Wdl~~g 520 (1395)
|....+
T Consensus 645 W~~~~~ 650 (764)
T KOG1063|consen 645 WEEPDL 650 (764)
T ss_pred EeccCc
Confidence 998875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-18 Score=183.54 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=192.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+....|+.+++||.+|++++..- .....| .|...+++++|.. ...+
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~----------------------------~l~~~~-~~~~plL~c~F~d-~~~~ 68 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPAN----------------------------SLKLKF-KHGAPLLDCAFAD-ESTI 68 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccch----------------------------hhhhhe-ecCCceeeeeccC-CceE
Confidence 334444577888889999999993310 111122 3778999999987 4568
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
++|+-||.|+++|+.++....+..|...|.||.+ ......+++||+|++|++||.+.......+
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--------------- 132 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTF--------------- 132 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEe-eccCCeEEEcccCccEEEEecccccccccc---------------
Confidence 9999999999999999998899999999999999 677788999999999999999963311111
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.....|+ +.+-.+..|++++.+..+.+||.+...... ...-..-...+.||++-|.+ .=
T Consensus 133 d~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~------------------q~reS~lkyqtR~v~~~pn~-eG 191 (323)
T KOG1036|consen 133 DQGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRNLDEPF------------------QRRESSLKYQTRCVALVPNG-EG 191 (323)
T ss_pred ccCceEE--EEeccCCEEEEeecCceEEEEEcccccchh------------------hhccccceeEEEEEEEecCC-Cc
Confidence 1112333 334456678888888889988887654320 11112344578999999976 56
Q ss_pred EEEEeCCCcEEEEeCCCC----ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 392 LASASLDGTVKIWDDRKS----TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++.+|-||+|.+=.+... +....|+.|.. .+|++++|+ |-...|+|+| .||.|.+||+.+.
T Consensus 192 y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh----p~~~tfaTgG-sDG~V~~Wd~~~r-- 264 (323)
T KOG1036|consen 192 YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH----PIHGTFATGG-SDGIVNIWDLFNR-- 264 (323)
T ss_pred eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec----cccceEEecC-CCceEEEccCcch--
Confidence 788899999887666554 44456666642 289999998 8888999988 8999999999877
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.+..|..-...+ ..++|+.||..||.++.
T Consensus 265 ----------Krl~q~~~~~~SI---------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 ----------KRLKQLAKYETSI---------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred ----------hhhhhccCCCCce---------EEEEeccCCCeEEEEec
Confidence 5555554333222 25999999999998874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=194.59 Aligned_cols=264 Identities=19% Similarity=0.173 Sum_probs=194.3
Q ss_pred ceeeeeCCCCCEEEEEEecCC--CEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVNR--NYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg--~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....++-+.+.|++++|+|.. +++|+|.+-|.|-+||+.+. .+..+..|.++|.+|.|++.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 334566788999999999954 68999999999999999642 46788999999999999878888999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++-|++.+..+..+. ..........+.|+.....++++..-|.+..||.+..+..
T Consensus 258 tiR~~D~~~~i~e~v~s------------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----------- 314 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLS------------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----------- 314 (498)
T ss_pred eeeeeeecchhhHHHhh------------cCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-----------
Confidence 99999999875322111 1122333456677788888888888887777877655442
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
+..+.-|...|++|+++|..+.+|+|||.|++++|||+|.-. ++-....|.. .|.++.|| |.+
T Consensus 315 --------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-sV~sAyFS----Ps~ 381 (498)
T KOG4328|consen 315 --------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR-SVNSAYFS----PSG 381 (498)
T ss_pred --------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccc-eeeeeEEc----CCC
Confidence 233445888999999999998999999999999999998632 2233335776 99999999 888
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..|++.| .|..|+|||..-...+. ..+.++. |...... ....| ...|.|+-.+|+.|-.-..|-|+|
T Consensus 382 gtl~TT~-~D~~IRv~dss~~sa~~--------~p~~~I~-Hn~~t~R-wlT~f--KA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 382 GTLLTTC-QDNEIRVFDSSCISAKD--------EPLGTIP-HNNRTGR-WLTPF--KAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CceEeec-cCCceEEeecccccccC--------Cccceee-ccCcccc-cccch--hheeCCCccEEEEeccCcceeEEc
Confidence 8899988 99999999984110000 1222222 2211101 01111 378889999999999988999998
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
-..+
T Consensus 449 ~~~~ 452 (498)
T KOG4328|consen 449 GNGG 452 (498)
T ss_pred CCCC
Confidence 6654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=182.87 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=201.8
Q ss_pred eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 250 ~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
...|++|.+.|++|+| +.||++|+|++.|++|+||+++.-... .-.+++..-..+ ..+.+.|.|+...+
T Consensus 79 ~~~LKgH~~~vt~~~F-sSdGK~lat~~~Dr~Ir~w~~~DF~~~---------eHr~~R~nve~d-hpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF-SSDGKKLATISGDRSIRLWDVRDFENK---------EHRCIRQNVEYD-HPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhccCCceeeeEE-cCCCceeEEEeCCceEEEEecchhhhh---------hhhHhhccccCC-CceEEEECCCcceE
Confidence 3478999999999999 999999999999999999999874310 011222221112 45689999998866
Q ss_pred EEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 330 LMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 330 la~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.. .++.++++-..+...+. .++....| +....-..|.-.|..+-....+ .+|++++.|..|.|||++
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~-----~~~~~v~~---D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk- 217 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGS-----GSHHFVHI---DNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK- 217 (420)
T ss_pred EEEEccCCEEEEEEeeecccCC-----CCcccccc---cccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-
Confidence 5554 45666666543322210 01101011 1122334566677777776555 899999999999999998
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccccc
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDA 488 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~ 488 (1395)
|+.+.++..... .-+..+.| |+|++|+++| ..-.|++|.+--+.. .....-..+..|++|...+..
T Consensus 218 Gq~L~~idtnq~-~n~~aavS----P~GRFia~~g-FTpDVkVwE~~f~kd----G~fqev~rvf~LkGH~saV~~---- 283 (420)
T KOG2096|consen 218 GQLLQSIDTNQS-SNYDAAVS----PDGRFIAVSG-FTPDVKVWEPIFTKD----GTFQEVKRVFSLKGHQSAVLA---- 283 (420)
T ss_pred Cceeeeeccccc-cccceeeC----CCCcEEEEec-CCCCceEEEEEeccC----cchhhhhhhheeccchhheee----
Confidence 999999987665 67888899 9999999998 888999998743310 001122345678888877654
Q ss_pred ccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC-CCcceeeeeee-------eccccEEEEecCCCCcC-cCCCCeEE
Q 039790 489 FFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP-ASTRMDYIAEF-------TVTMPILSLTGTTTDAS-PDGEHIVQ 559 (1395)
Q Consensus 489 ~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~-~~~~~~~i~~f-------~~~~~ils~~~~~~d~~-~s~dg~V~ 559 (1395)
++|+++...+++.+.||+++|||.+-.-.. ..++ .+.++ ....-.+.+.... +.+ .+....++
T Consensus 284 -----~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk--~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~gs~l~ 355 (420)
T KOG2096|consen 284 -----AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK--ILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSFGSDLK 355 (420)
T ss_pred -----eeeCCCcceeEEEecCCcEEEeeccceEecCCCch--HhhcCCcchhhcCCCceEEEeCCCC-cEEEeecCCceE
Confidence 999999999999999999999997631110 0111 12222 1112234555444 333 34556799
Q ss_pred EEEcCCCcee----eecccceEEecCCCCC-eecccCCCceEEEe
Q 039790 560 IYCVQTQAIQ----QYALDLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 560 lWdv~t~~i~----~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
+|+..+++.. ..|.....|+.++.++ +..+-.| ..+|++
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVI 399 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeee
Confidence 9999998754 4466777899999987 3333334 333343
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=197.08 Aligned_cols=225 Identities=17% Similarity=0.162 Sum_probs=173.9
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
.+.+..|+.|...|.+.+|.+. .+..+..+..|...|+|+.|+-||.+|++|
T Consensus 90 ~n~G~~l~ag~i~g~lYlWels----------------------------sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELS----------------------------SGILLNVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred CCCceEEEeecccCcEEEEEec----------------------------cccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence 4444566666677777777743 124455667899999999999999999999
Q ss_pred EcCCeEEEEECCC----------CceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 235 LKLGNIRILNIIT----------ALRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 235 s~DG~IrIWd~~~----------~~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
++||.|++|.+-+ ..++.|.+|+-.|+++.. .. ...+|+|+|.|.++++||+..|.
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~----------- 209 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGV----------- 209 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEe-cCCCccceEEEecCCceEEEEEeccce-----------
Confidence 9999999998643 257899999999999998 43 34689999999999999999886
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC--CeE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EIT 380 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~ 380 (1395)
.+..+ .....+.+++.+|.+..+++++.++.|........... +.+-. .-........+..+.||.+ .|+
T Consensus 210 LLlti----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~---~~~v~-~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 210 LLLTI----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ---SAGVN-QKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred eeEEE----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc---ccccc-ccccccccceeeeeccccCCccee
Confidence 22222 23456789999999999999999999998877554310 00000 0000111223677889998 999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
|++++-|| ++|++|+.||.|+|||+.+.+|++++....+ +|+.+.+.
T Consensus 282 cLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg-pVtnL~i~ 328 (476)
T KOG0646|consen 282 CLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG-PVTNLQIN 328 (476)
T ss_pred EEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhcc-ccceeEee
Confidence 99999999 8999999999999999999999999986666 99999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=193.37 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=211.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCC---EEEEEEcCCeEEEEECCCCc----------------------e---------
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRN---YICYGLKLGNIRILNIITAL----------------------R--------- 250 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~---~LasGs~DG~IrIWd~~~~~----------------------~--------- 250 (1395)
....+..+.||.++|.+++|+.-+. +||+|+.|..||||.+.-+- .
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4467788999999999999988554 89999999999999864210 0
Q ss_pred -EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC--CCCccEEEEeCCCC
Q 039790 251 -SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG--DSVHPRVCWHPHKQ 327 (1395)
Q Consensus 251 -~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~--~~~v~~v~~sp~~~ 327 (1395)
..+.||.++|+++.| .+.+..|++++.|.++.||...+. +|-++..+++-.-. ....+.+.|++++.
T Consensus 260 eall~GHeDWV~sv~W-~p~~~~LLSASaDksmiiW~pd~~---------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW-HPEGLDLLSASADKSMIIWKPDEN---------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred hhhhcCcccceEEEEE-ccchhhheecccCcceEEEecCCc---------cceEEEEEEeecccccccceeeEEEcCCCC
Confidence 123599999999999 888889999999999999998764 34566555554333 44577899999999
Q ss_pred eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE----
Q 039790 328 EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI---- 403 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI---- 403 (1395)
.+++-|..|....|-...... | .....+.||.+.|++++|+|.| .+|++.|.|-+-|+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~---w--------------~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTF---W--------------TQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW 391 (764)
T ss_pred EEEEecccCcEEEEeccCccc---e--------------eeccccccccccceeeeecCCC-CEEEEeccccceeeeccc
Confidence 999999999999997322111 0 0022344566666666666655 45555555555554
Q ss_pred ------------------------------------------EeCC----------------------------------
Q 039790 404 ------------------------------------------WDDR---------------------------------- 407 (1395)
Q Consensus 404 ------------------------------------------WDl~---------------------------------- 407 (1395)
|+..
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 3321
Q ss_pred ---------CCc---------------------------------eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 408 ---------KST---------------------------------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 408 ---------sg~---------------------------------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
+|. .++.+.||.- .|++|+.+ |+|+++++++..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s----~~gnliASaCKS 546 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAIS----PTGNLIASACKS 546 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce-eEEEEEec----CCCCEEeehhhh
Confidence 000 1122346754 89999999 999999998732
Q ss_pred ----CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 446 ----NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 446 ----Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...|+||+..+ |..++.+.+|.-.++. +.||+||++|++.+.|+++.+|....+.
T Consensus 547 ~~~ehAvI~lw~t~~------------W~~~~~L~~HsLTVT~---------l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTAN------------WLQVQELEGHSLTVTR---------LAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred CCccceEEEEEeccc------------hhhhheecccceEEEE---------EEECCCCcEEEEeecCceEEeeeeeccc
Confidence 24699999855 4888889999876654 9999999999999999999999986543
Q ss_pred CCCCcceeeeeeeeccccEEEEecCCCCc-C--cCCCCeEEEEEcCCC
Q 039790 522 NPASTRMDYIAEFTVTMPILSLTGTTTDA-S--PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~~~ils~~~~~~d~-~--~s~dg~V~lWdv~t~ 566 (1395)
... .++..+..++ ..++..+..+... + ++-|.+|+||.....
T Consensus 606 ~~e-~~fa~~k~Ht--RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 606 KDE-FRFACLKAHT--RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred chh-hhhccccccc--eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 222 1222222221 2334444333111 1 477999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=184.65 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=163.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 228 RNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++.+++++.||.|++||..++. +..+..|. .+.+++| ++++..+ ++++.|+.|++||+.+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~-~~dg~~l~~~~~~~~~v~~~d~~~~~~------------- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITL-SKDGKLLYVCASDSDTIQVIDLATGEV------------- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEE-CCCCCEEEEEECCCCeEEEEECCCCcE-------------
Confidence 3578899999999999998874 55565554 4778999 8888876 6777899999999998761
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
+..+..+ .....++|+++++.+++++. ++.+.+|+... ... +..+. +...+.+++|
T Consensus 66 -~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~-------------------~~~~~-~~~~~~~~~~ 122 (300)
T TIGR03866 66 -IGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKV-------------------LAEIP-VGVEPEGMAV 122 (300)
T ss_pred -EEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeE-------------------EeEee-CCCCcceEEE
Confidence 1212222 22457899999988877765 45566665532 110 22222 2345688999
Q ss_pred ecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 385 CQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+|+| .++++++.++ .+.+||..++..+..+.... .+.+++|+ ++|++|++++..++.|++||+.++
T Consensus 123 ~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s----~dg~~l~~~~~~~~~v~i~d~~~~------ 189 (300)
T TIGR03866 123 SPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RPRFAEFT----ADGKELWVSSEIGGTVSVIDVATR------ 189 (300)
T ss_pred CCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEcCC--CccEEEEC----CCCCEEEEEcCCCCEEEEEEcCcc------
Confidence 9998 7888887765 57788999888776654332 56889999 999988776657999999999987
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDYG 520 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~g 520 (1395)
+++..+..+..... ...+....+.|+++|.+++. .+.++.|++||+.++
T Consensus 190 ------~~~~~~~~~~~~~~--~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 190 ------KVIKKITFEIPGVH--PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred ------eeeeeeeecccccc--cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 77776654422110 01122235789999997544 456778999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=185.94 Aligned_cols=236 Identities=11% Similarity=0.142 Sum_probs=191.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..++|..+.+.+||+.|++|+.-.++.|||+.... ...+....-..+.++. ++|.++.++|+.||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~-spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc-CCccceeeeeccCCcEEEEEcccce
Confidence 35789999999999999999999999999998752 3345555556888999 9999999999999999999999865
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.++.+.+|.+.+.||.++.+|..|..+|-++++..||.+...+
T Consensus 543 --------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq----------------------- 585 (705)
T KOG0639|consen 543 --------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ----------------------- 585 (705)
T ss_pred --------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----------------------
Confidence 4566778888899999999999999999999999998865332
Q ss_pred Eccc--CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKH--DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h--~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+..| ...|.++.++|.+ .+|+.|-.++.|.|.... +...+.+.-|.. .|.+|.|. +.|+|++++| .|+.+
T Consensus 586 lqqhdF~SQIfSLg~cP~~-dWlavGMens~vevlh~s-kp~kyqlhlheS-cVLSlKFa----~cGkwfvStG-kDnlL 657 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTS-KPEKYQLHLHES-CVLSLKFA----YCGKWFVSTG-KDNLL 657 (705)
T ss_pred hhhhhhhhhheecccCCCc-cceeeecccCcEEEEecC-Cccceeeccccc-EEEEEEec----ccCceeeecC-chhhh
Confidence 1123 4579999999998 899999999998887754 444566777887 99999999 9999999999 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..|.+.-| ..+...+..+. + .++.+|.|.++|++|+.|....+|.+.
T Consensus 658 nawrtPyG------------asiFqskE~Ss-V---------lsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 658 NAWRTPYG------------ASIFQSKESSS-V---------LSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred hhccCccc------------cceeeccccCc-c---------eeeeeccCceEEEecCCCcceEEEEEe
Confidence 99998776 44443332221 1 257889999999999999888777753
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=180.56 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=206.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
.+.|..+.|++.+..|+++++||.+++||+....+.....|..++.+++| . +...+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F-~-d~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAF-A-DESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeec-c-CCceEEEeccCceEEEEEecCCc----
Confidence 47899999999999999999999999999998876666679999999999 3 46789999999999999999987
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
...++.|...+.++++++..+.+++++.++.|..||.+.... ...+ ..
T Consensus 87 -----------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--------------------~~~~-d~ 134 (323)
T KOG1036|consen 87 -----------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--------------------VGTF-DQ 134 (323)
T ss_pred -----------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--------------------cccc-cc
Confidence 245678899999999999888999999999999998864111 1111 13
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.+.|.|+..+ | +.|+.|+.|..|.+||+|+.......+ ..-...+.||++. |++.-.+++ |-||.|.+=.+
T Consensus 135 ~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~----pn~eGy~~s-SieGRVavE~~ 206 (323)
T KOG1036|consen 135 GKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV----PNGEGYVVS-SIEGRVAVEYF 206 (323)
T ss_pred CceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEe----cCCCceEEE-eecceEEEEcc
Confidence 3478888875 3 789999999999999999865433222 1112378999998 877777764 49999988666
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
+..+ +.-.....|+.|.......+..+.+..++|+|--..|++|+.||.|.+||+.. ..++..+++|
T Consensus 207 d~s~--------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-----rKrl~q~~~~ 273 (323)
T KOG1036|consen 207 DDSE--------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-----RKRLKQLAKY 273 (323)
T ss_pred CCch--------HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc-----hhhhhhccCC
Confidence 5431 11123345666765554555666677899999999999999999999999876 3467778888
Q ss_pred eccccEEEEe
Q 039790 535 TVTMPILSLT 544 (1395)
Q Consensus 535 ~~~~~ils~~ 544 (1395)
......++|.
T Consensus 274 ~~SI~slsfs 283 (323)
T KOG1036|consen 274 ETSISSLSFS 283 (323)
T ss_pred CCceEEEEec
Confidence 5544444444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=180.85 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=178.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
..|+.|++.|.+||+|+.||.|.|||+.+. .-..+.+|..+|++++| +++|+.|+|++.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~W-S~dgr~LltsS~D~si~lwDl~~gs~----- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCW-SRDGRKLLTSSRDWSIKLWDLLKGSP----- 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEe-cCCCCEeeeecCCceeEEEeccCCCc-----
Confidence 789999999999999999999999999986 46678899999999999 99999999999999999999999872
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
+..++ ....|..+.|||.+...++++- ...-++++... .....+..+.+. .-.
T Consensus 100 ------l~rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~---------------dln 153 (405)
T KOG1273|consen 100 ------LKRIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDG---------------DLN 153 (405)
T ss_pred ------eeEEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecC-CceeeccCCCcc---------------ccc
Confidence 22222 3567888999998776555543 33333333322 111111100000 001
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
....+..|.+.| +++++|...|.+.|||..+-+|+..++--....|..+.|+ -.|++|++-+ .|+.||.|++..
T Consensus 154 ~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s----~~g~~liiNt-sDRvIR~ye~~d 227 (405)
T KOG1273|consen 154 SSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS----RKGRFLIINT-SDRVIRTYEISD 227 (405)
T ss_pred cccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe----ccCcEEEEec-CCceEEEEehhh
Confidence 112233678877 8999999999999999999999999886653389999998 8899999866 999999999873
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
-.... ........+.+.. .+.. ..| ..++|+.+|.|+++++ .-..+|||.-..|.
T Consensus 228 i~~~~---r~~e~e~~~K~qD---vVNk---~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 228 IDDEG---RDGEVEPEHKLQD---VVNK---LQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred hcccC---ccCCcChhHHHHH---HHhh---hhh-hheeecCCccEEEeccccceeEEEEecCCcc
Confidence 20000 0000011111110 0000 011 2589999999998887 45679999988775
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-18 Score=197.11 Aligned_cols=319 Identities=17% Similarity=0.170 Sum_probs=204.7
Q ss_pred eeeeCCCCCEEE--EEEec---CCCEEEEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEE
Q 039790 210 TKYISDPGLVLG--RQIAV---NRNYICYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 210 ~~l~~h~~~V~~--va~Sp---dg~~LasGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs 277 (1395)
..+..|.-++.- +.|++ ..+.|+.+..||.|.++|.... .+..+..|.+.|.++.| .+...+|++++
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~w-apge~~lVsas 119 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKW-APGESLLVSAS 119 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeecc-CCCceeEEEcc
Confidence 344444444433 55665 4578999999999999998764 24566789999999999 77778999999
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCcc--ccc--
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKG--ERF-- 352 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~--~~~-- 352 (1395)
.|.++++||+.++.+ ....++.+|...+.++||++.+..+|++|. ++.+.+||.+..+.. ..|
T Consensus 120 GDsT~r~Wdvk~s~l------------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~ 187 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRL------------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN 187 (720)
T ss_pred CCceeeeeeecccee------------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence 999999999998872 223456788999999999999998777765 666777776554311 000
Q ss_pred ---cCCCCCccCccccccceEEEcccCCCeEE---EEEecCCCcEEEEEeC-CCcEEEEeCCCCceeEE--------ecC
Q 039790 353 ---SAEEPLKCPVDELINGVQLVGKHDGEITE---LSMCQWLTTRLASASL-DGTVKIWDDRKSTPLAV--------LRP 417 (1395)
Q Consensus 353 ---s~~~~~~~~~~~~~~~~~~l~~h~~~V~s---lafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~t--------l~~ 417 (1395)
..-..-........++...-..|...|.+ +.+..|. ..||+++. |+.|||||+++..+... +..
T Consensus 188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 00000000111111223333445555555 5566666 78999888 99999999997543322 222
Q ss_pred CC--CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 418 YD--GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 418 h~--~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
|. ...+.++... ..|.+|++.| .|+.|++|++.+. .-..+..|.++.. ..|++ .-.
T Consensus 267 ~skrs~G~~nL~lD----ssGt~L~AsC-tD~sIy~ynm~s~----------s~sP~~~~sg~~~------~sf~v-ks~ 324 (720)
T KOG0321|consen 267 HSKRSVGQVNLILD----SSGTYLFASC-TDNSIYFYNMRSL----------SISPVAEFSGKLN------SSFYV-KSE 324 (720)
T ss_pred cccceeeeEEEEec----CCCCeEEEEe-cCCcEEEEecccc----------CcCchhhccCccc------ceeee-eee
Confidence 31 1256777776 7789999888 7999999999874 1134444444432 12332 356
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
.++|+.+|++|+.|...|+|.+..-..+.. +..-+.+.++.-.+...........++|..++||++..+
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChh--hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 789999999999999999999987543211 111111222222222221110111378899999999665
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=176.97 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=184.4
Q ss_pred CCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC-Cc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 215 DPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT-AL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 215 h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~-~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-.+.|.+++||| ...+|+.|+.||+||+|++.. |. -.....|.++|.+++| +.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W-sddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW-SDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE-ccCCceEEeeccCCceEEEEccCC
Confidence 347899999999 566777999999999999987 32 2455679999999999 999999999999999999999998
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
. ...+..|+..|..+.|-+... .++++|+-++.+++|+.+.... +
T Consensus 105 Q---------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-------------------v 150 (347)
T KOG0647|consen 105 Q---------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-------------------V 150 (347)
T ss_pred C---------------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-------------------e
Confidence 7 456778899999999987665 4667777666666666543221 2
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
..+. -.+.|+++..-. .+++.+..++.|.+|+++.+.. .+.+...-..-++||+.. .|+...+.+ +-+|.
T Consensus 151 ~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f----~d~~~~alG-siEGr 221 (347)
T KOG0647|consen 151 ATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF----QDKDGFALG-SIEGR 221 (347)
T ss_pred eeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE----ecCCceEee-eecce
Confidence 2232 445677776543 4788888999999999987632 222222222368899887 777777774 49999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.|..+..+ .. +.-.+|+.|.........-|-+..++|.|.-..|++.+.||++.+||-+.
T Consensus 222 v~iq~id~~---------~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 222 VAIQYIDDP---------NP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEEEecCCC---------Cc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999998875 11 33345666654322112234455799999989999999999999999654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=188.86 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=195.6
Q ss_pred CCEEEEEE-cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 228 RNYICYGL-KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 228 g~~LasGs-~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
+.|++++. .-..|.+|.+.... .....--.+.|.+++- +++|.+|+.|+..|.|++|.+.+|.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s-~n~G~~l~ag~i~g~lYlWelssG~-------------- 114 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS-SNLGYFLLAGTISGNLYLWELSSGI-------------- 114 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeec-CCCceEEEeecccCcEEEEEecccc--------------
Confidence 46777764 44689999998763 2222234568999998 8999999999999999999999998
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+.++..|-..++++.|+-++..|+.++.|+.++.|........ +. +....+++.+..|.-.|+++...
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a-----~~------~~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA-----DN------DHSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc-----cc------CCCccceeeeccCcceeEEEEec
Confidence 34556778888999999999999999999999999987654321 11 11345588899999999999987
Q ss_pred cCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC--
Q 039790 386 QWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL-- 462 (1395)
Q Consensus 386 pdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~-- 462 (1395)
+-|. .+|+|+|.|.++|+||+..|..+.++.... .+.+|+.+ |-++.+.+|+ .+|.|.+.++....+...
T Consensus 184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~--si~av~lD----pae~~~yiGt-~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS--SIKAVALD----PAERVVYIGT-EEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred CCCccceEEEecCCceEEEEEeccceeeEEEecCC--cceeEEEc----ccccEEEecC-CcceEEeeehhcCCcccccc
Confidence 7532 499999999999999999999999887654 79999999 8888888865 999999998866522111
Q ss_pred --CCCcccccEEEEEeccCc--ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 463 --PSDIESWKCTQTLELKSS--AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 463 --~~~~~~~~~l~tl~~h~~--~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.........+..+.+|.+ .+ .+++++-||.+|++|+.||.|+|||+..
T Consensus 257 ~~k~~~~~~t~~~~~~Gh~~~~~I---------TcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVGHENESAI---------TCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccccccccceeeeeccccCCcce---------eEEEEecCccEEEeeCCCCCEEEEecch
Confidence 111233455667777776 33 3599999999999999999999999866
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=185.61 Aligned_cols=250 Identities=13% Similarity=0.119 Sum_probs=191.4
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.+.|++|.|+|....|.+|+.||+++||.++.. .++.+.-..-+|.+.+| .++|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f-~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF-APNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeee-cCCCceEEEecccceEEEEeeccccc
Confidence 478999999999999999999999999999875 35555556779999999 78888 89999999999999999887
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..... ...+.....+..+..++++++|+..|..+.|.++-.....- +..
T Consensus 292 ~~k~~-----------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--------------------i~s 340 (514)
T KOG2055|consen 292 VTKLK-----------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--------------------ITS 340 (514)
T ss_pred ccccc-----------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--------------------hhe
Confidence 33222 11222344566788899999999999999999886533211 122
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
++ -.+.|.+++|+.|+ +.|+.++.+|.|.+||++...|++.|....+-.-+++|.+ ++|.||++ ||..|.|.|
T Consensus 341 ~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S----~ng~ylA~-GS~~GiVNI 413 (514)
T KOG2055|consen 341 FK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS----LNGSYLAT-GSDSGIVNI 413 (514)
T ss_pred ee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec----CCCceEEe-ccCcceEEE
Confidence 22 45789999999998 7888888899999999999999999986554344667777 88999988 559999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDY 519 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~ 519 (1395)
||..+.. .....+.+.++..-...+ ..+.|++|+.+|+-++ .++.+++.|+..
T Consensus 414 Yd~~s~~------~s~~PkPik~~dNLtt~I---------tsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 414 YDGNSCF------ASTNPKPIKTVDNLTTAI---------TSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eccchhh------ccCCCCchhhhhhhheee---------eeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 9976541 112335555555444333 3599999999987766 678899999865
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=191.08 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=245.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCE-EEEEEcCCeEEEEECCCCceE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNY-ICYGLKLGNIRILNIITALRS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~-LasGs~DG~IrIWd~~~~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
+.+..|+...+.|+.++|.-||+. +|+|+..|.+.+||++...+. ....|.+.|....| -+....+++++.|..++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f-l~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF-LPGEPVLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee-cCCCceEeeccCCCcee
Confidence 456677755699999999999975 567777899999999987533 44479999999999 77888999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCC------C---------
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRV------G--------- 347 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~------~--------- 347 (1395)
+|=.+++... ...++...+|..+..++.|.-. +..++..+.+.....+..... +
T Consensus 314 ~~vfD~~dg~----------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 314 VWVFDSGDGV----------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred EEEeeCCCCc----------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 9988866511 2346777888888899999854 444555555554443322110 0
Q ss_pred cc-------------ccccCC---------------CCCccCccccccc---eEEEc-----ccCCCeEEEEEecCCCcE
Q 039790 348 KG-------------ERFSAE---------------EPLKCPVDELING---VQLVG-----KHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 348 ~~-------------~~~s~~---------------~~~~~~~~~~~~~---~~~l~-----~h~~~V~slafspdg~~~ 391 (1395)
+. ..|..+ +...+..|...+. ..++. .-...+++++.++.| ++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence 00 011111 1112333433222 22332 123679999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEe---cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVL---RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl---~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.+.|+..|+|-+|++.+|-...+| ..|++ +|+.|+.. .-++.++++| .+|-+++||....
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~-~V~gla~D----~~n~~~vsa~-~~Gilkfw~f~~k----------- 525 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG-EVTGLAVD----GTNRLLVSAG-ADGILKFWDFKKK----------- 525 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccC-ceeEEEec----CCCceEEEcc-CcceEEEEecCCc-----------
Confidence 999999999999999999888888 48987 99999997 6778899988 9999999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEEEecCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILSLTGTT 547 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils~~~~~ 547 (1395)
..+..++...... .+.++....+++.+..|-.|+++|..+. +.+++|.++. .+-.+++++
T Consensus 526 -~l~~~l~l~~~~~----------~iv~hr~s~l~a~~~ddf~I~vvD~~t~--------kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 526 -VLKKSLRLGSSIT----------GIVYHRVSDLLAIALDDFSIRVVDVVTR--------KVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred -ceeeeeccCCCcc----------eeeeeehhhhhhhhcCceeEEEEEchhh--------hhhHHhhccccceeeeEeCC
Confidence 6666666544321 3666777888899999999999998763 2566777653 344455544
Q ss_pred CCc--C--cCCCCeEEEEEcCCCceeeecccceEEec----CCCCCeecccCCCceEEEee
Q 039790 548 TDA--S--PDGEHIVQIYCVQTQAIQQYALDLSQCLP----PPLENAELEKTDSNATRAFD 600 (1395)
Q Consensus 548 ~d~--~--~s~dg~V~lWdv~t~~i~~~~~~~~~cl~----~s~d~l~~~~sd~~v~~iWD 600 (1395)
|+ + ++-|++|++||+-|+.+.++-+-...|.. |..|-++..-.|..-+.+|-
T Consensus 587 -DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 587 -DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 33 3 56799999999999988776544444533 55566777766755556883
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=186.95 Aligned_cols=237 Identities=18% Similarity=0.250 Sum_probs=176.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCC----ceE------------------EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 227 NRNYICYGLKLGNIRILNIITA----LRS------------------LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~----~~~------------------~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.|+|+|.|+.|..|.|||+.-- ... .-.+|++.|.+|.|+-...+.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3689999999999999998631 000 123799999999996666789999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
||+.+|+ +..++.+|...|.++.|++....++.+|+ ++.+.+.|.+.....
T Consensus 271 WD~~~g~--------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------------- 322 (463)
T KOG0270|consen 271 WDVDTGK--------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------------- 322 (463)
T ss_pred EEcCCCC--------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------------
Confidence 9999998 55667789999999999999886666655 666666666532110
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...-.-.+.|-.++|.+.....++++..||+|+-+|+|.. +++.+++.|.+ .|.+|+++ ..-..++++
T Consensus 323 ------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n----~~~p~~l~t 391 (463)
T KOG0270|consen 323 ------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVN----IQTPGLLST 391 (463)
T ss_pred ------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEec----CCCCcceee
Confidence 0011145678999999998889999999999999999985 99999999998 99999998 666666666
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++.|+.|++|++....+.. ...+.++... .++.++.++ ..+|+.|+..+.++|||+-++.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~--------v~~~~~~~~r-----------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKS--------VKEHSFKLGR-----------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceEEEEeecCCCCcc--------cccccccccc-----------eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 7799999999997652210 0111111110 112344443 3567788888899999997754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=187.27 Aligned_cols=252 Identities=19% Similarity=0.271 Sum_probs=179.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCc---ccccceeeeeCCCCCEEEEEEecC-CCEEEE
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQ---LEVTPITKYISDPGLVLGRQIAVN-RNYICY 233 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~---~~~~~i~~l~~h~~~V~~va~Spd-g~~Las 233 (1395)
+.++|.|..|..|.+||++--+--+= .+.. |....+ ..++.-..-.+|++.|..++|..+ .+.||+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P-------~~~L---Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS 261 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP-------CVTL---GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS 261 (463)
T ss_pred cceEEEeccCceeEEecccccccccc-------ceee---chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe
Confidence 37899999999999999652211000 0000 100000 011111223479999999999875 468999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.|.+|++||+.+| +..++..|.+.|.++.|++....+|++|+.|++|.+.|.+...+. + ..++
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------~---~~wk---- 327 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------G---KEWK---- 327 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-------C---ceEE----
Confidence 999999999999998 577888899999999998889999999999999999999953311 0 0122
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEc-CCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDS-NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
..+.|-.+.|++.....+.++.+++++++.+ +..++ ++..+..|.+.|.+|+++..-+.+
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcc
Confidence 2455778999999998888887766666544 33332 277888999999999999988889
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|++.|+.|++|++..-.+-.+.. -.-+ ...|.++. |+-.++++.|+..+.++|||+.+.
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~----~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEHSFKLG-RLHCFALD----PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eeeccccceEEEEeecCCCCccccccccccc-ceeecccC----CCcceEEEecCccceEEEeecccC
Confidence 9999999999999987554322221 1122 45555665 665554444547889999999876
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=205.58 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=168.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|.+|...|.|+.|+.+..+|+.|+.+|+|++||++.+. +++|.||...+.+|.| +|-+.++++|+.|+.+++|
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f-~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF-HPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee-ccceEEeccccccccceeh
Confidence 4455689999999999999999999999999999999999874 7899999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|++... |...++.|...+.++.|+|+|.++..++ ++.++.+|+...++.
T Consensus 140 D~Rk~G--------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~---------------- 188 (825)
T KOG0267|consen 140 DIRKKG--------------CSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKL---------------- 188 (825)
T ss_pred hhhccC--------------ceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeeccccccc----------------
Confidence 999655 5667777888999999999997555544 455555555444432
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...|.+|.+.|..+.|+|.. .++++|+.|++|++||+++...+...+.... .|.++.|+ |++..++++.
T Consensus 189 ---~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn----~~~~~~~~G~ 257 (825)
T KOG0267|consen 189 ---SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFN----PDGKIVLSGE 257 (825)
T ss_pred ---ccccccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccC-Cceeeeec----CCceeeecCc
Confidence 56678899999999999987 8999999999999999999888888887766 89999999 9999888743
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=197.09 Aligned_cols=243 Identities=16% Similarity=0.251 Sum_probs=179.7
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccC---CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGH---TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..+...++-..|+.++. ..+.||.+... +...+++. .-.+.+|+|..-+.++|++|+..|.|-+||+....
T Consensus 43 nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 44455677777777776 46777776653 22222221 12466788976778999999999999999998621
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
. -..+..+..|+..+.+++||+...+++.+|+.++.++.|+.+..+. ...
T Consensus 122 r-----------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-------------------~~t 171 (839)
T KOG0269|consen 122 R-----------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-------------------KST 171 (839)
T ss_pred c-----------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-------------------ccc
Confidence 0 0134567789999999999999998888888666666555443322 455
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+.+....|.+|.|+|..+++|+++...|.+++||+|.. ++...+.+|.| +|.|+.|+ |++.||++|| .|++|+
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwh----Pnr~~lATGG-RDK~vk 245 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWH----PNREWLATGG-RDKMVK 245 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeec----CCCceeeecC-CCccEE
Confidence 66788899999999987789999999999999999985 77888999998 99999998 9999999988 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEe--CCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANA--KKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs--~Dg~I~iWdl~~ 519 (1395)
|||+.+.+. +.+.++. .. +....+.|-|+.. +|++++ .|-.|+|||+..
T Consensus 246 iWd~t~~~~----------~~~~tIn--Ti--------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 246 IWDMTDSRA----------KPKHTIN--TI--------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred EEeccCCCc----------cceeEEe--ec--------ceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 999987621 2222222 11 1122577777655 555555 588899999975
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-16 Score=181.37 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=192.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..-...|.+++|+.+.+.||.+-.||.|-||++..+ +...+.++. ..|-+++| . ++..|.|.+.+|.|.-||+.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W-~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAW-A-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEE-c-cCCeEEeecCCceEEEEecc
Confidence 3345588999999999999999999999999999987 455666654 57999999 5 56788899999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ .+.......+.+.+++.+|.+..+.++|.+|.++.+.. ..+.. .-
T Consensus 99 ~lk--------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~-~p~~I-----------------~~ 146 (691)
T KOG2048|consen 99 TLK--------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI-GPDKI-----------------TY 146 (691)
T ss_pred cCc--------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec-CCceE-----------------EE
Confidence 987 44445556778899999999976666666663333322 22211 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CC--CCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PY--DGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h--~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
...+...++.|.+++|++++ ..|++|+.||.|++||+.++..++... .. +..-|++|.|. .++ .|++
T Consensus 147 ~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~-tI~s 220 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDS-TIAS 220 (691)
T ss_pred EeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecC-cEEE
Confidence 34455567899999999998 889999999999999999998777221 11 11268899997 454 4555
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|..-|+|++||...+ ..++.+..|...+.+ ++..+++.++++++.|+.|.-+...++.
T Consensus 221 -gDS~G~V~FWd~~~g------------TLiqS~~~h~adVl~---------Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 221 -GDSAGTVTFWDSIFG------------TLIQSHSCHDADVLA---------LAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred -ecCCceEEEEcccCc------------chhhhhhhhhcceeE---------EEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 668999999999988 888888888877644 8888999999999999999998887754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=177.99 Aligned_cols=397 Identities=14% Similarity=0.140 Sum_probs=242.6
Q ss_pred CCCCeEEeecCCCCEEEEeC----------------------cCCCCCee-ee-CceE--EEEEeccCCCccCcccccce
Q 039790 156 PPSDSTVVIPSAPPVRLRSS----------------------KVPKGRHL-IG-NHSV--YDIDVRLDGEVQPQLEVTPI 209 (1395)
Q Consensus 156 ~p~~~Las~s~Dg~Vrlwd~----------------------~sp~Gr~L-~G-~~~v--~~v~~~~~G~~~~~~~~~~i 209 (1395)
..+..||.+-.||.|.+|.+ |.+.||++ .| +..| ||+ ..++++
T Consensus 35 ~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl-----------~~lk~~ 103 (691)
T KOG2048|consen 35 HKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL-----------HTLKQK 103 (691)
T ss_pred ccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec-----------ccCcee
Confidence 33466788888888888873 33445554 22 2222 333 234677
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
..+....+.|++++.++.++.++.||.||.+..++...+.+ ..|.-.+++|.+++| .+++..|++|+.||.|++||
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw-~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW-NPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe-cCCccEEEecccCceEEEEE
Confidence 77888889999999999999999999999888888777753 345556789999999 89999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
...+.... +...++.+- ....|.++.|-.++ .+++|...+.+.+|+...+.-
T Consensus 183 ~~~~~t~~---------~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL-------------- 237 (691)
T KOG2048|consen 183 VKSGQTLH---------IITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL-------------- 237 (691)
T ss_pred cCCCceEE---------EeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcch--------------
Confidence 99987211 112222221 23345566666444 455555555555555443321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce----eEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP----LAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
++.+..|.+.|.|++..+++ .++++++.|+.|.-|....+.. ......|.. .|.+++.. ++ .|
T Consensus 238 -----iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~----~~--~l 304 (691)
T KOG2048|consen 238 -----IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH-DVRSMAVI----EN--AL 304 (691)
T ss_pred -----hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcc-cceeeeee----cc--eE
Confidence 45566799999999999987 7999999999998887665432 222335554 78999886 33 66
Q ss_pred EEEecCCCeEEEEECCCCCC--CCCCC-----Cc----ccccEEEEEeccCccccc-------------------ccccc
Q 039790 440 ITGGPLNRELKIWASAEEEG--WLLPS-----DI----ESWKCTQTLELKSSAELR-------------------LEDAF 489 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~--~~~~~-----~~----~~~~~l~tl~~h~~~i~~-------------------~~~~~ 489 (1395)
+++| .|.++.+-..+.... ...+. +. ...+.+..+..|...... ....-
T Consensus 305 ~sgG-~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~ 383 (691)
T KOG2048|consen 305 ISGG-RDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE 383 (691)
T ss_pred Eecc-eeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcc
Confidence 6655 787777665543100 00000 00 011111111122111110 01111
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cC-CCCeEEEEEcCCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PD-GEHIVQIYCVQTQ 566 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s-~dg~V~lWdv~t~ 566 (1395)
...+.+.||+|++|+-+.- ..++||++.+........++.+..+......++|+... +.+ .+ .+..+.++++.+.
T Consensus 384 nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~-~k~~~~s~~~~~le~~el~~p 461 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDK-NKLFLVSKNIFSLEEFELETP 461 (691)
T ss_pred ceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecC-ceEEEEecccceeEEEEecCc
Confidence 2346889999999988764 45889999875543334444444444445555666544 221 23 4566777777665
Q ss_pred ceeeec-------ccceEEecCCCCC--eecccCCCceEEEeecCCCCc
Q 039790 567 AIQQYA-------LDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDG 606 (1395)
Q Consensus 567 ~i~~~~-------~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~ 606 (1395)
...+.. .+...-+..++++ +++..+. +.+.+|++.+++.
T Consensus 462 s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 462 SFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-GQIFVYNLETLES 509 (691)
T ss_pred chhhhhccccccCCCcceeEEEcCCCCEEEEEecc-ceEEEEEccccee
Confidence 332211 1111123344444 6666655 6666999987774
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=179.55 Aligned_cols=210 Identities=16% Similarity=0.264 Sum_probs=162.3
Q ss_pred CCCCCEEEEEEecCC--CEEEEEEcCCeEEEEECCC-----------------CceEEeccCCCCeEEEEEeeCCCCEEE
Q 039790 214 SDPGLVLGRQIAVNR--NYICYGLKLGNIRILNIIT-----------------ALRSLLRGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg--~~LasGs~DG~IrIWd~~~-----------------~~~~~l~~H~~~V~slaf~s~dg~~La 274 (1395)
.|.+.|..+..++-| .+.|+=+..|.|+|||+.. ..+.++.+|.+.=+.|+|++.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577788887777644 5556667889999999853 146788999999999999544445688
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
||..-+.|++|...+|. |...-..+..|...|-.++|+|....+|++|+-++.+++|+.+.+..
T Consensus 229 sGDc~~~I~lw~~~~g~-----------W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~----- 292 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGS-----------WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK----- 292 (440)
T ss_pred cCccccceEeeeeccCc-----------eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-----
Confidence 99888999999999876 33333344458889999999999988888887665555555444321
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK---STPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s---g~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
+.....+.|.+.|+-|.|+..- .+||+|+.||+++|||+|. ++++.+|+.|.. +|++|.|+
T Consensus 293 ------------~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~-- 356 (440)
T KOG0302|consen 293 ------------KAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWH-- 356 (440)
T ss_pred ------------cceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEec--
Confidence 1134457899999999999987 5999999999999999986 688999999998 99999998
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|....++.+++.|.+|.|||+...
T Consensus 357 --p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 357 --PHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred --cccCceEEeccCCCcEEEEEeecc
Confidence 554433333449999999999754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-17 Score=178.28 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=164.5
Q ss_pred eccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC-CCCCc-ccccceEEEEEEecCCCCCccEEEEeCCCCe-
Q 039790 253 LRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD-EEDKP-QILGKIVVAIQILADGDSVHPRVCWHPHKQE- 328 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~-~~~~~-~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~- 328 (1395)
..+|.+.|+.+.-... +..+.++=+..|.|+|||+...-. +.... .........+..+..|...-+.++|+|-..-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 3457777777666222 456777788899999999875321 00000 0011223356677788888899999995544
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.+-..+.|+.|.... +. |..- ..-|.+|...|-++.|||.....|+|||.||+|+|||+|.
T Consensus 227 LlsGDc~~~I~lw~~~~-g~--------------W~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-GS--------------WKVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cccCccccceEeeeecc-Cc--------------eeec--CccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 44443455566655433 22 1111 2345679999999999998878999999999999999999
Q ss_pred C---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 409 S---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 409 g---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
+ .++.+ +.|.+ -|+.|.|+ -+-.+|+++| .||+++|||++.. ...+.+.+|+.|...+++
T Consensus 290 ~~~~~~~~~-kAh~s-DVNVISWn----r~~~lLasG~-DdGt~~iwDLR~~---------~~~~pVA~fk~Hk~pIts- 352 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNS-DVNVISWN----RREPLLASGG-DDGTLSIWDLRQF---------KSGQPVATFKYHKAPITS- 352 (440)
T ss_pred CCccceeEe-eccCC-ceeeEEcc----CCcceeeecC-CCceEEEEEhhhc---------cCCCcceeEEeccCCeeE-
Confidence 8 45555 88988 99999998 5555677755 9999999999987 555889999999988765
Q ss_pred cccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 486 EDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 486 ~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
+.|+| +...|++++.|+.|.|||+.....
T Consensus 353 --------ieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 353 --------IEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred --------EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 77765 456888889999999999987544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-18 Score=208.28 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=184.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-EEEEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-YICYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~LasGs~D 237 (1395)
-.|+.|..||.|.+|+... .+..-+...+.++..|.+.|.++.|++... +||+|+.|
T Consensus 81 GlIaGG~edG~I~ly~p~~----------------------~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPAS----------------------IIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeccccCCceEEecchh----------------------hccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 3588888899999988331 111223356778889999999999999654 99999999
Q ss_pred CeEEEEECCCCc-eEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-
Q 039790 238 GNIRILNIITAL-RSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG- 313 (1395)
Q Consensus 238 G~IrIWd~~~~~-~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~- 313 (1395)
|.|.|||++.-. -..+ ..-.+.|.+|+|+....++|++++.+|++.|||++..+. + +.+....
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-----------i--i~ls~~~~ 205 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-----------I--IKLSDTPG 205 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-----------c--cccccCCC
Confidence 999999998742 1111 124568999999767778999999999999999998751 1 1121111
Q ss_pred CCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
...+..+.|||++..-++++.++ .|..||.+.... +++++.+|...|.++.|++.+.
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-------------------P~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-------------------PLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-------------------chhhhcccccceeeeccCCCCc
Confidence 23466899999988666665543 244455433222 2677789999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|+|++.|++|.+|+..+|+.+..+....+ |+..|.|+ |....++++.+.||.|.||.+...
T Consensus 267 ~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~----pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWC----PRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeec----CCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999999999987554 99999999 777766666779999999999876
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=182.24 Aligned_cols=309 Identities=14% Similarity=0.139 Sum_probs=210.7
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCc
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGR 281 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~Dgt 281 (1395)
+...+-..|.||.+.|.|+...+.|.+||+|+.||+||||.+.+| |+.++. ..+.|.||+| .+.+. .++.....+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw-~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAW-NPLSDLCVLAVAVGEC 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEe-cCCCCceeEEEEecCc
Confidence 445666789999999999999999999999999999999999999 444443 4568999999 55443 3444444555
Q ss_pred EEEEECCCCCCCCCCc---------cccc------ceE--------EEEEEecCCCCCccEEEEeCCCCeEEEEEeCC--
Q 039790 282 FFIWNITEGPDEEDKP---------QILG------KIV--------VAIQILADGDSVHPRVCWHPHKQEILMLAIGN-- 336 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~---------~~~~------~~i--------~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-- 336 (1395)
+.|-+..-|..+...+ .... .|. ..+.+.-.+...+..+.||..|.+|.+++.++
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 7777766663221110 0000 111 11234445677888999999999998887644
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
.+++....+... ..-|....+.|.++.|+|.. .+|+.++ -..|+|||+..+..++.+
T Consensus 546 ~~VliHQLSK~~s--------------------Q~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 546 KSVLIHQLSKRKS--------------------QSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKL 603 (733)
T ss_pred ceEEEEecccccc--------------------cCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHH
Confidence 344444433221 12233456789999999987 4565554 467999999998888887
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
..... +|.+++.+ |.|..|+.++ .|+.+..||+... .+..+++..|...++. ++
T Consensus 604 ~tg~k-wiS~msih----p~GDnli~gs-~d~k~~WfDldls-----------skPyk~lr~H~~avr~---------Va 657 (733)
T KOG0650|consen 604 LTGSK-WISSMSIH----PNGDNLILGS-YDKKMCWFDLDLS-----------SKPYKTLRLHEKAVRS---------VA 657 (733)
T ss_pred hcCCe-eeeeeeec----CCCCeEEEec-CCCeeEEEEcccC-----------cchhHHhhhhhhhhhh---------hh
Confidence 76665 99999997 9999999865 9999999999754 2667888888877655 88
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCC-CCCCcceeeeeeeecccc-----EEEEecCCC-CcC--cCCCCeEEEEE
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGP-NPASTRMDYIAEFTVTMP-----ILSLTGTTT-DAS--PDGEHIVQIYC 562 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~-~~~~~~~~~i~~f~~~~~-----ils~~~~~~-d~~--~s~dg~V~lWd 562 (1395)
|++.=.++++|+.||++.|++-.--. ....+.+..+....++.. ++....... .++ +.+||+|++|+
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 88888999999999999999854211 112233444444444422 222222220 111 34677888874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=179.08 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=179.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+....+. .-.|++......|+++|+..|.|+|||+... +.+.+++|...|++|.| .....||++++..|.|.|..+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y-N~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY-NNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred eeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe-cCCcceeEEeccCCcEEEEec
Confidence 3344443 3345555555689999999999999999976 46688999999999999 777789999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
.++... ..+.+. ...+.-+.|++....++..+++++++.+|+.......
T Consensus 151 ~t~~~t--------------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---------------- 200 (673)
T KOG4378|consen 151 KTKQKT--------------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---------------- 200 (673)
T ss_pred ccCccc--------------cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----------------
Confidence 988622 222232 3445578999999999999888887777775543221
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
......|..+...|+|+|..+.+|++.+.|..|.+||++..+....+... . +..+|+|. ++|.+|+++ ...
T Consensus 201 --~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~-Plstvaf~----~~G~~L~aG-~s~ 271 (673)
T KOG4378|consen 201 --FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-H-PLSTVAFS----ECGTYLCAG-NSK 271 (673)
T ss_pred --cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-C-Ccceeeec----CCceEEEee-cCC
Confidence 33445699999999999999889999999999999999988777777643 3 89999999 999988885 489
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
|.|..||++.. ...+.++..|...+. +++|-+..
T Consensus 272 G~~i~YD~R~~-----------k~Pv~v~sah~~sVt---------~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRST-----------KAPVAVRSAHDASVT---------RVAFQPSP 305 (673)
T ss_pred ceEEEEecccC-----------CCCceEeeeccccee---------EEEeeecc
Confidence 99999999865 256777777776654 37776554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=176.16 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=208.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-E
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-Y 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~ 230 (1395)
+++.|..+.|++++.|+++|++.+. |+.- ..+..+.-....|.+..|+++|. .
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvD---------------------Gk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVD---------------------GKVN-----PKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEec---------------------CccC-----hhheeeeeccCccceeeecCCCceE
Confidence 4445555899999999999998843 1111 12223333446788899999999 8
Q ss_pred EEEEEcCCeEEEEECCCCce---EEeccCCC-CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITALR---SLLRGHTQ-RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~---~~l~~H~~-~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+++++....+++||+.++++ ..+.++.. .+..... ++++++|+..|..|.|.+....++. ++..
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~e-----------li~s 340 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKE-----------LITS 340 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEe-cCCCCeEEEcccCceEEeehhhhhh-----------hhhe
Confidence 99999999999999999854 34455553 4666777 8999999999999999999988877 3333
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC--CeEEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slaf 384 (1395)
+++ ++.+..++|+.++..++++|.++.+++|+.....- ++.+. -.+ .-++++.
T Consensus 341 ~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--------------------~~rf~-D~G~v~gts~~~ 395 (514)
T KOG2055|consen 341 FKI----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--------------------LHRFV-DDGSVHGTSLCI 395 (514)
T ss_pred eee----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--------------------EEEEe-ecCccceeeeee
Confidence 333 45678899999999999999999999998865421 23332 122 3467777
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCC------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec-CCCeEEEEECCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRK------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP-LNRELKIWASAEE 457 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~IWDl~tg 457 (1395)
++++ .|||+||..|.|.|||..+ .+++.++..-.. .|+++.|+ +|.+.|+.++. .+..+|+-.+.+.
T Consensus 396 S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn----~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 396 SLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFN----HDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred cCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeC----cchhhhhhhhhccccceEEEeccce
Confidence 8888 7999999999999999653 367777776665 89999999 99999887542 4678899888665
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.....|......+ . ...+++|||.|.+|+.|-.+|.|.+|.+.
T Consensus 470 ------------TVFsNfP~~n~~v-----g-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 ------------TVFSNFPTSNTKV-----G-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ------------eeeccCCCCCCcc-----c-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4444443333222 2 34579999999999999999999999875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-16 Score=181.58 Aligned_cols=322 Identities=15% Similarity=0.149 Sum_probs=203.3
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
+.|+.+-.||.|.+++... .++. ++...+..+..|.+.|.++.|.|....|++++.|.
T Consensus 65 HiLavadE~G~i~l~dt~~----------~~fr------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs 122 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKS----------IVFR------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS 122 (720)
T ss_pred ceEEEecCCCceeeecchh----------hhcc------------hhhhhhcccccccceeEeeccCCCceeEEEccCCc
Confidence 7899999999999998431 0111 23344566778999999999999778899999999
Q ss_pred eEEEEECCCCc-e--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC-------CCcccccc--eEE-
Q 039790 239 NIRILNIITAL-R--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE-------DKPQILGK--IVV- 305 (1395)
Q Consensus 239 ~IrIWd~~~~~-~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~-------~~~~~~~~--~i~- 305 (1395)
+|++||++++. . ..+.||.+.|.++||+.-|...|++|+.||.|.|||++...... ......+. ...
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 99999999873 2 35899999999999977788899999999999999998654110 00011110 000
Q ss_pred ---EEEEecCCCCCccE---EEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc---
Q 039790 306 ---AIQILADGDSVHPR---VCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH--- 375 (1395)
Q Consensus 306 ---~l~~~~~~~~~v~~---v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h--- 375 (1395)
.+.....+...+.. +.+..|...|+.+|. |+.|.+||.++.... |..+ + .+...+..|
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~e-p---------~~~~~~~t~skr 270 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA--YRQE-P---------RGSDKYPTHSKR 270 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc--cccC-C---------CcccCccCcccc
Confidence 01111112222333 555667767777777 556666666553221 1000 0 001112223
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEE-EEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCV-TFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV-~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.++.....|. +|...+.|+.|++||+++- .++..+.++....++-- ..+ ||+.+|+++ +.|....+|
T Consensus 271 s~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS----pd~~~l~Sg-Ssd~~ayiw 344 (720)
T KOG0321|consen 271 SVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS----PDDCSLLSG-SSDEQAYIW 344 (720)
T ss_pred eeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC----CCCceEecc-CCCcceeee
Confidence 34577888888784 5544455999999999864 56666666543222111 223 899999985 499999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCCCC------C
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANAKKNAIYAIHMDYGPNPA------S 525 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs~Dg~I~iWdl~~g~~~~------~ 525 (1395)
.+.+. +.....+.+|.-.+.. ++|. ..-.-++++++|.+++||++..|-.+. .
T Consensus 345 ~vs~~-----------e~~~~~l~Ght~eVt~---------V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s 404 (720)
T KOG0321|consen 345 VVSSP-----------EAPPALLLGHTREVTT---------VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDS 404 (720)
T ss_pred eecCc-----------cCChhhhhCcceEEEE---------EeeccccCCCceeeccCcceEEEeccCchhhccccccch
Confidence 99876 2334445666544433 4442 233345566999999999996543321 1
Q ss_pred cceeeeeeeeccccE
Q 039790 526 TRMDYIAEFTVTMPI 540 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~i 540 (1395)
....+..+|.++.+.
T Consensus 405 ~v~~~~~rfk~~~p~ 419 (720)
T KOG0321|consen 405 IVYEYSRRFKGHLPQ 419 (720)
T ss_pred hhhhhhhhhhccccc
Confidence 233455556555443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-15 Score=166.68 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=190.4
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...|.|+.|.++|. +++|..+|.|.||+..+.. .+....|.+.|.+++. -.+|. |+||+.|+.|..||-.-.+..+
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~-lr~Gt-llSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCM-LRDGT-LLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEE-ecCcc-EeecCccceEEecccccccccc
Confidence 37899999999998 7899999999999997763 3333499999999999 77776 5569999999999933222110
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
+.+ .+..+.+..|+ +.+..++++...+.|+.-...+.. .....+
T Consensus 323 ------------~el-Pe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f---------------------~~~v~g 366 (626)
T KOG2106|consen 323 ------------TEL-PEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGF---------------------TLTVQG 366 (626)
T ss_pred ------------ccC-chhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCc---------------------eEEEEe
Confidence 000 11112222222 233346766666666654432211 344567
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
|.+..+.++.+|+. ..|++++.|+.+++|+ ..+++.+..-.. ++.|+.|. |.| .++. |...|...+.|.
T Consensus 367 h~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d--~~~~~~fh----psg-~va~-Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 367 HGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKIIED--PAECADFH----PSG-VVAV-GTATGRWFVLDT 435 (626)
T ss_pred cccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEEecC--ceeEeecc----Ccc-eEEE-eeccceEEEEec
Confidence 99999999999998 8999999999999999 555555554332 79999997 999 6666 559999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
.+. ..+.. ......+ .++.|+++|.+|+.|+.|+.||||.+..+. ..+..+...
T Consensus 436 e~~------------~lv~~-~~d~~~l---------s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g----~~y~r~~k~ 489 (626)
T KOG2106|consen 436 ETQ------------DLVTI-HTDNEQL---------SVVRYSPDGAFLAVGSHDNHIYIYRVSANG----RKYSRVGKC 489 (626)
T ss_pred ccc------------eeEEE-EecCCce---------EEEEEcCCCCEEEEecCCCeEEEEEECCCC----cEEEEeeee
Confidence 775 33332 2223222 369999999999999999999999998753 244445555
Q ss_pred eccccEEEEecCCCCcC----cCCCCeEEEE
Q 039790 535 TVTMPILSLTGTTTDAS----PDGEHIVQIY 561 (1395)
Q Consensus 535 ~~~~~ils~~~~~~d~~----~s~dg~V~lW 561 (1395)
.+ .++..++.+. |.. -++|-.|..|
T Consensus 490 ~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 490 SG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred cC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 55 7777777766 443 3678889999
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=204.22 Aligned_cols=247 Identities=18% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCEEEEEEecCCCE----EEEEEcCCeEEEEECCC---C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 217 GLVLGRQIAVNRNY----ICYGLKLGNIRILNIIT---A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~----LasGs~DG~IrIWd~~~---~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...++++|.+.|.. ||.|+.||.|.+||... + .+..+..|++.|..+.|+.-.+++|++|+.||.|+||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34567888887665 89999999999999865 2 3567889999999999966667799999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+..-+. .+ ..+ .......|.++.|+..-.+||++++.. .+.+||.+....
T Consensus 145 Dlnn~~t--P~--~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---------------- 196 (1049)
T KOG0307|consen 145 DLNKPET--PF--TPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---------------- 196 (1049)
T ss_pred ccCCcCC--CC--CCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------------
Confidence 9997441 00 000 112346788999999999999988876 666666654322
Q ss_pred cccceEEEcccC--CCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 365 LINGVQLVGKHD--GEITELSMCQWLTTRLASASLDG---TVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 365 ~~~~~~~l~~h~--~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
+..+..|. ..+..++|+|++.+.|++++.|. .|.+||+|.- .+++++.+|.. .|.++.|+ +.|..+
T Consensus 197 ----ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc---~~D~~l 268 (1049)
T KOG0307|consen 197 ----IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWC---PQDPRL 268 (1049)
T ss_pred ----ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccC---CCCchh
Confidence 12222222 45789999999988888888764 5999999974 78999999997 99999999 234488
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEc
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl 517 (1395)
|+++| .|+.|.+|+..++ +.+..|...+.+. .-+.|.+. -.++++.+.||.|-|+.+
T Consensus 269 llSsg-kD~~ii~wN~~tg------------Evl~~~p~~~nW~---------fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 269 LLSSG-KDNRIICWNPNTG------------EVLGELPAQGNWC---------FDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred hhccc-CCCCeeEecCCCc------------eEeeecCCCCcce---------eeeeecCCCcchhhhheeccceeeeee
Confidence 88888 9999999999998 7777776544332 23666554 458888999999999998
Q ss_pred CCCC
Q 039790 518 DYGP 521 (1395)
Q Consensus 518 ~~g~ 521 (1395)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 7654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=163.06 Aligned_cols=302 Identities=12% Similarity=0.040 Sum_probs=203.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
-+.++++|+.||.|.+||+...+...-.+ +.... ........-.+|.-.|..+.|-| |...+.+++
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~----li~k~---------~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASG----LIAKH---------KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcc----ceehe---------eeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 44899999999999999965432111100 00000 00001123357888999999998 667888999
Q ss_pred cCCeEEEEECCCCceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 236 KLGNIRILNIITALRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
.|.+++|||.++-+......-.+.|++-+|++- .-.+|++|..|-.|++.|+..|. +-.++.+|
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--------------~sH~LsGH 187 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--------------FSHTLSGH 187 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------------ceeeeccc
Confidence 999999999999765544456678888888322 23467788888899999999998 45667789
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCc-cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGK-GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
...|..|.|+|...+++++|+-++ +..||.++... ....+.-... ....++.-..|.+.|+.++|+.++ .+
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k------~~p~~~~n~ah~gkvngla~tSd~-~~ 260 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK------RPPILKTNTAHYGKVNGLAWTSDA-RY 260 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc------cCccccccccccceeeeeeecccc-hh
Confidence 999999999999999999887555 55555544321 1111110000 000123345699999999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCce-eEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 392 LASASLDGTVKIWDDRKSTP-LAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~-l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+++++.|..+++|+..+|+- ++.+- .|.. -.+..|... .-+...++- -..|+.+.++.+-.+
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~--~~~~~~~~~-~~~s~vfv~-~p~~~~lall~~~sg----------- 325 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQ--TTSFAVHIQ-SMDSDVFVL-FPNDGSLALLNLLEG----------- 325 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccc--cccceEEEe-ecccceEEE-EecCCeEEEEEccCc-----------
Confidence 99999999999999988742 22221 1111 111111100 022222222 236789999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..++.++.|...+. +.++.++=....+|..|+.|+.|-.
T Consensus 326 -s~ir~l~~h~k~i~---------c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 -SFVRRLSTHLKRIN---------CAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEEeeecccceee---------EEeecCchhhhhccccCCccccccc
Confidence 88899998865543 4777888888999999999999976
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=183.62 Aligned_cols=255 Identities=17% Similarity=0.217 Sum_probs=181.7
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+++..+.|++++.||++++|.+.- ..........+|.+|.+|.+.|.|+++..++.+++
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk--------------------~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQK--------------------AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcc--------------------cCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 3344448999999999999999520 01111245588999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 233 YGLKLGNIRILNIITA-----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~-----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+|+.||+|+.|++... ....+.||++.||.+++ +.....|++|+.||+||+|+...... ..+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~---- 434 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESP-CTFG---- 434 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee-cccccceeeecCCceEEeeccCCcCc-cccC----
Confidence 9999999999965421 34578999999999999 77778899999999999999886551 1110
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-------c
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-------K 374 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-------~ 374 (1395)
.........++.+-.....+.++....+...++....... +.++. .
T Consensus 435 --------~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------------------~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 435 --------EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------------------LLIFESSASPGPR 487 (577)
T ss_pred --------CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-------------------eeeccccCCCccc
Confidence 0011122223333222211222222222222222111111 11111 1
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
-...++-+.++|.+ .+.+++..|+.|+++|..++.+++....|.. .|+++++. |+|.+|+++. .|+.|++|.+
T Consensus 488 ~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~----~ng~~l~s~s-~d~sv~l~kl 560 (577)
T KOG0642|consen 488 RYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAID----PNGPYLMSGS-HDGSVRLWKL 560 (577)
T ss_pred ccCccceEEecCCC-CeeEecccCCceecccccccccchheeeccc-eecceeec----CCCceEEeec-CCceeehhhc
Confidence 12357778888987 6999999999999999999999999999997 99999999 9999999955 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
... .|+.....|.
T Consensus 561 d~k------------~~~~es~~~r 573 (577)
T KOG0642|consen 561 DVK------------TCVLESTAHR 573 (577)
T ss_pred cch------------heeecccccc
Confidence 776 7877776665
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=184.78 Aligned_cols=249 Identities=16% Similarity=0.246 Sum_probs=173.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCC---------CCCee--eeCceEEEEEeccCCCccC----c-ccccceeeeeCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVP---------KGRHL--IGNHSVYDIDVRLDGEVQP----Q-LEVTPITKYISD 215 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp---------~Gr~L--~G~~~v~~v~~~~~G~~~~----~-~~~~~i~~l~~h 215 (1395)
+...+.+..|.+++.||.||.|+..+. .|..+ .+...-+-+....++.... . -....+.+|.
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft-- 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT-- 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeee--
Confidence 566777889999999999999996654 23333 1100001111111111000 0 1122333443
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
-.+.+++|+.+|+++|.|+.|-.|++.+..+. ....+++|+++|.+|.| .+++++||+.+.||+|+|||+.++.+..
T Consensus 97 -lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 97 -LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSK 174 (933)
T ss_pred -ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeE-cCCCCEEEEEecCceEEEEEcccchhhh
Confidence 57889999999999999999999999999886 68899999999999999 8999999999999999999999987433
Q ss_pred CCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..... ....... ...+..++|+|+++.+++.+.++.+.++....... ...++ ..
T Consensus 175 tl~~v-------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-----------------~f~Lr-~~ 229 (933)
T KOG1274|consen 175 TLTGV-------DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-----------------QFKLR-DK 229 (933)
T ss_pred hcccC-------CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-----------------heeec-cc
Confidence 22100 0001111 34566899999999999999999999987643221 11011 12
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.|...+.++.|+|.| .|||+++.||.|-|||+.+... .... ..|++++|- |++..+
T Consensus 230 ~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~~----~~~~-~~Vc~~aw~----p~~n~i 285 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHER----HEFK-RAVCCEAWK----PNANAI 285 (933)
T ss_pred ccccceEEEEEcCCC-cEEeeeccCCcEEEEecccchh----cccc-ceeEEEecC----CCCCee
Confidence 234449999999998 8999999999999999987221 1112 379999997 776544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=164.07 Aligned_cols=348 Identities=15% Similarity=0.150 Sum_probs=228.9
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCC--------eEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEE--
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLG--------NIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASA-- 276 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG--------~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSg-- 276 (1395)
.-+.|.+|...|.|+.++||.-.+++|-..| .|||||..+- .++.+......|++++|+..++.-++..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4467889999999999999999999875555 5999996553 4666666677899999965555444444
Q ss_pred -ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 -SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 -s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.+..+.|||...+.... -.......+..+.|+|.+..+++++..+.+..|......
T Consensus 176 ~s~~h~lSVWdWqk~~~~~--------------~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-------- 233 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLG--------------PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-------- 233 (626)
T ss_pred CCCccccchhhchhhhccC--------------cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--------
Confidence 334568899998766211 112234456678999999999999988888888553321
Q ss_pred CCCccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+.+...+|++++ ..|.|++|.++| -+++|..+|.|.||+.++.+..+....|.+ .|.+++.. .
T Consensus 234 ---------l~k~~~~fek~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~l----r 297 (626)
T KOG2106|consen 234 ---------LVKRQGIFEKREKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCML----R 297 (626)
T ss_pred ---------eEEEeeccccccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEe----c
Confidence 122233444443 579999999987 588999999999999988877777779998 99999998 7
Q ss_pred CCcEEEEEecCCCeEEEEECCCC--CCCCCCCCcc---------ccc---------E--------EEEEeccCccccccc
Q 039790 435 QHIVLITGGPLNRELKIWASAEE--EGWLLPSDIE---------SWK---------C--------TQTLELKSSAELRLE 486 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg--~~~~~~~~~~---------~~~---------~--------l~tl~~h~~~i~~~~ 486 (1395)
+|. |+++| .|+.|..||-.-. +.--+|.... ..- + ..+..+|...
T Consensus 298 ~Gt-llSGg-KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de----- 370 (626)
T KOG2106|consen 298 DGT-LLSGG-KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE----- 370 (626)
T ss_pred Ccc-EeecC-ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc-----
Confidence 775 55566 9999999993221 0000111000 000 0 0111222221
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCC--cCcCCCCeEEEEEcC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTD--ASPDGEHIVQIYCVQ 564 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~ 564 (1395)
...++..++..++++++.|+.+++|+ +. ...+..+.+. +..+.++.... .+....|...|.|.+
T Consensus 371 ----lwgla~hps~~q~~T~gqdk~v~lW~-~~-----k~~wt~~~~d----~~~~~~fhpsg~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 371 ----LWGLATHPSKNQLLTCGQDKHVRLWN-DH-----KLEWTKIIED----PAECADFHPSGVVAVGTATGRWFVLDTE 436 (626)
T ss_pred ----eeeEEcCCChhheeeccCcceEEEcc-CC-----ceeEEEEecC----ceeEeeccCcceEEEeeccceEEEEecc
Confidence 23578889999999999999999999 21 2222333332 22222222211 113456788899999
Q ss_pred CCceeeecccc--eEEecCCCCC--eecccCCCceEEEeecC-CCCcceeeccCCC
Q 039790 565 TQAIQQYALDL--SQCLPPPLEN--AELEKTDSNATRAFDVA-NPDGSASLESSHG 615 (1395)
Q Consensus 565 t~~i~~~~~~~--~~cl~~s~d~--l~~~~sd~~v~~iWD~~-tg~~~~~l~g~~~ 615 (1395)
+..+.+.+.+. ..|+.+++++ ++++..|+.+- +|-+. .|.........+|
T Consensus 437 ~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy-iy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 437 TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY-IYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE-EEEECCCCcEEEEeeeecC
Confidence 98776655443 4577787776 88888776654 66654 4444444444444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=165.45 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=189.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-------------ceEEec-cCCCCeEEEEEe------eCCCCEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA-------------LRSLLR-GHTQRVTDMAFF------AEDVHLLASA 276 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-------------~~~~l~-~H~~~V~slaf~------s~dg~~LaSg 276 (1395)
....++.|+|||..|.+-+.|..+++|++... ....++ -..+.|.+.+|. .|+.+++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34457889999999999999999999997531 111111 134568888884 2677899999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC--CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD--SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~--~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+.|.-|++||.-+|+....+ +.+.+.+ ....+++|+|+|..|+ +|....|.+++..+.++.
T Consensus 130 sr~~PIh~wdaftG~lraSy-----------~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~----- 192 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASY-----------RAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRD----- 192 (406)
T ss_pred cccCceeeeeccccccccch-----------hhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCC-----
Confidence 99999999999999833222 1121111 1234799999997655 577888999998776642
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
|...... .+-..+..+-|.|++|+|-....++.|+...++-||.-..+.++..+.+|.+ .|+.++|. +
T Consensus 193 -----c~vy~t~--~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-GvThL~~~----e 260 (406)
T KOG2919|consen 193 -----CPVYTTV--TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-GVTHLQWC----E 260 (406)
T ss_pred -----Ccchhhh--hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC-CeeeEEec----c
Confidence 1111111 1112345678999999999877999999999999999999999999999998 99999998 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE--EeCCCCEEEEEeCCCeE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA--LNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~--~S~dg~~LaSgs~Dg~I 512 (1395)
||..|+++...|-.|-.||++.. ...+-.|..|.+.. ++.+. ..++|.+|++|+.||.|
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~-----------~~pv~~L~rhv~~T--------NQRI~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYS-----------RDPVYALERHVGDT--------NQRILFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred CcCeecccccCCCeEEEEeehhc-----------cchhhhhhhhccCc--------cceEEEecCCCCceeeccCCCccE
Confidence 99999998888999999999865 13334444444321 22343 46889999999999999
Q ss_pred EEEEcCC
Q 039790 513 YAIHMDY 519 (1395)
Q Consensus 513 ~iWdl~~ 519 (1395)
++||+..
T Consensus 322 ~vwdlk~ 328 (406)
T KOG2919|consen 322 RVWDLKD 328 (406)
T ss_pred EEEecCC
Confidence 9999987
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=182.57 Aligned_cols=263 Identities=16% Similarity=0.176 Sum_probs=187.2
Q ss_pred CCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCce-------EEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEE
Q 039790 216 PGLVLGRQIAV-NRNYICYGLKLGNIRILNIITALR-------SLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIW 285 (1395)
Q Consensus 216 ~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~-------~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IW 285 (1395)
...|.|+.|+| +..+||.|+++|.|.+||+..+.. .....|...|+.+.| -.+ +.-|++++.||.|+.|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW-~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW-LQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE-eccCCCCceEEEecCCcEeee
Confidence 47899999999 778899999999999999988633 234568999999999 333 3459999999999999
Q ss_pred ECCCCCC-CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPD-EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~-~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+++.-.. .+.. .................++++.|.+.....|.+|.+ |.|+........... .
T Consensus 321 ~~~~l~~P~e~~---~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~------------~ 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGL---LLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP------------E 385 (555)
T ss_pred eccccccchhhc---ccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc------------c
Confidence 8876431 0000 000000001111234567789999988766666665 445543433222110 0
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...++...+..|.+.|+++.++|.+...|.+++ |.+|+||... ...++..+..+.. .|++++|| |...-++.+
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWS----ptrpavF~~ 459 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWS----PTRPAVFAT 459 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc-eeeeeEEc----CcCceEEEE
Confidence 222335566779999999999999976777776 9999999987 6788888888876 79999999 888888877
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+..||.|.|||+... ....+.+.+.+.. +...+.|+++|.+|+.|...|.|++|++..
T Consensus 460 ~d~~G~l~iWDLl~~----------~~~Pv~s~~~~~~---------~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQD----------DEEPVLSQKVCSP---------ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCCCceehhhhhcc----------ccCCccccccccc---------ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 878999999999764 1133333333321 223588899999999999999999999964
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=162.60 Aligned_cols=283 Identities=16% Similarity=0.186 Sum_probs=189.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCC------CCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEe
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVP------KGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIA 225 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp------~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~S 225 (1395)
--++|++.-|++.+.|..+++|.+-.. +++..... .+..++. ....|+...|-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~--------------------~~~~r~~-eg~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK--------------------HLSYRYQ-EGETVYDYCWY 113 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccccc--------------------ceeEEec-cCCEEEEEEee
Confidence 457888999999999999999984321 11111101 1111111 22445555554
Q ss_pred -------cCCCEEEEEEcCCeEEEEECCCCce-EEec--cCCCC---eEEEEEeeCCCCEEEEEECCCcEEEEEC-CCCC
Q 039790 226 -------VNRNYICYGLKLGNIRILNIITALR-SLLR--GHTQR---VTDMAFFAEDVHLLASASVDGRFFIWNI-TEGP 291 (1395)
Q Consensus 226 -------pdg~~LasGs~DG~IrIWd~~~~~~-~~l~--~H~~~---V~slaf~s~dg~~LaSgs~DgtV~IWdl-~tg~ 291 (1395)
|+..++|+.+.+.-|++||..+|.+ ..++ .|-++ -.+++| ++||.+|+.|. ...|+|+|+ +.|.
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCCC
Confidence 5778999999999999999999853 3443 35444 458999 99999998765 568999999 5555
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
....+.... +-..+..+.+.+++|+|.....+++|+-+.-+-+.... -..++.+
T Consensus 192 ~c~vy~t~~-------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-------------------~~~pl~l 245 (406)
T KOG2919|consen 192 DCPVYTTVT-------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-------------------GRRPLQL 245 (406)
T ss_pred CCcchhhhh-------cccccccceeeeeeccCCCCcceeeecccceeeeEecC-------------------CCCceee
Confidence 322221100 00122356678899999998777777655433332211 1233788
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+.+|.+.|+.+.|+++| +.|.+|. .|-.|-.||+|. +.++..+..|.+..-..|.|..+ |+|++|++++ .||.|
T Consensus 246 lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld--~~~~~LasG~-tdG~V 321 (406)
T KOG2919|consen 246 LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD--PKGEILASGD-TDGSV 321 (406)
T ss_pred ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC--CCCceeeccC-CCccE
Confidence 88999999999999999 6677766 578899999997 57888888887655667888644 8899999865 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
++||+.+.. ..+..+..+...+. .+++.|--.++++++
T Consensus 322 ~vwdlk~~g-----------n~~sv~~~~sd~vN---------gvslnP~mpilatss 359 (406)
T KOG2919|consen 322 RVWDLKDLG-----------NEVSVTGNYSDTVN---------GVSLNPIMPILATSS 359 (406)
T ss_pred EEEecCCCC-----------Cccccccccccccc---------ceecCcccceeeecc
Confidence 999998731 32333444443332 377777755555554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=163.13 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=201.9
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+++-+..||+|..||.|-+||.. +. ..-+.+.+|...|++++||+||+.|+
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~-----------------T~-----------~iar~lsaH~~pi~sl~WS~dgr~Ll 81 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFD-----------------TF-----------RIARMLSAHVRPITSLCWSRDGRKLL 81 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEcc-----------------cc-----------chhhhhhccccceeEEEecCCCCEee
Confidence 345556788888888888888822 11 23456788999999999999999999
Q ss_pred EEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+++.|..|.+||+..|. ++.++ ...+|+.+.|++.+.+.++.+-.+..-.+-++..+.- ..+....
T Consensus 82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------------~~Lp~d~ 148 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------------SVLPKDD 148 (405)
T ss_pred eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce------------eeccCCC
Confidence 99999999999999884 44444 5679999999888888877777777777777765430 0111111
Q ss_pred --CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCC
Q 039790 312 --DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWL 388 (1395)
Q Consensus 312 --~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg 388 (1395)
.......+..|++.|.+++++...|.+.+++..... | +..++-.. ..|..+-|+..|
T Consensus 149 d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------------~--------vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 149 DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------------C--------VASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccccccCCCCEEEEecCcceEEEEecchhe------------e--------eeeeeechheeeeEEEEeccC
Confidence 111222345688999999999999999988875432 1 22232223 678899999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCC-------c--eeEEecC--CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKS-------T--PLAVLRP--YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg-------~--~l~tl~~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|+.-+.|+.||.|+++.- . +.+.+.. .+. .-.+++|+ .+|.|++++...-..++||.-..|
T Consensus 209 -~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-~Wk~ccfs----~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 209 -RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-QWKKCCFS----GDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred -cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh-hhhheeec----CCccEEEeccccceeEEEEecCCc
Confidence 89999999999999997631 1 1111110 111 34688999 899999988777889999999888
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+++.+.+..+...- -+.|.+-..+|++- ..|.||+|....-
T Consensus 283 ------------sLVKILhG~kgE~l~--------DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 283 ------------SLVKILHGTKGEELL--------DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ------------ceeeeecCCchhhee--------ecccccceeeeeec-cCCceEEEEeecc
Confidence 999999887644321 26677877888877 6788999998653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=171.90 Aligned_cols=237 Identities=18% Similarity=0.207 Sum_probs=175.9
Q ss_pred EEEEEEecCCCEEEEE--EcCCeEEEEECCCC--ce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 219 VLGRQIAVNRNYICYG--LKLGNIRILNIITA--LR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 219 V~~va~Spdg~~LasG--s~DG~IrIWd~~~~--~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..+.|+.... |+++ +.|..|++|.-... .+ ..+.+. .-.|++. .....|+++||..++|+|||++...
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~-~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC-ASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh-hhcceeeeccCcCceeeehhhHHHH
Confidence 77788877654 4444 56889999987654 22 222232 2233333 2234899999999999999999543
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
+.++..+|...|+++.|+..+.+|.++..+|.|++.......+.. .
T Consensus 113 --------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt--------------------~ 158 (673)
T KOG4378|consen 113 --------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT--------------------T 158 (673)
T ss_pred --------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc--------------------c
Confidence 556778899999999999999888888888888887765443321 1
Q ss_pred Ec-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCe
Q 039790 372 VG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRE 448 (1395)
Q Consensus 372 l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~ 448 (1395)
|. +....|.-+.|++....+|.+++.+|.|.+||+....+++.+ +.|.. +...|||+ |... +|++.| .|..
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-P~~gicfs----psne~l~vsVG-~Dkk 232 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-PCRGICFS----PSNEALLVSVG-YDKK 232 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC-CcCcceec----CCccceEEEec-ccce
Confidence 22 123456789999988678999999999999999988887765 47876 99999999 6555 566667 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|.+||++.. +...++..... ...++|+++|.+|++|...|.|+.||++.-+
T Consensus 233 i~~yD~~s~------------~s~~~l~y~~P----------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 233 INIYDIRSQ------------ASTDRLTYSHP----------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred EEEeecccc------------cccceeeecCC----------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999999876 44444443221 1259999999999999999999999998743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-13 Score=160.08 Aligned_cols=315 Identities=20% Similarity=0.310 Sum_probs=212.0
Q ss_pred CEEEEEE-ecCCC-EEEEEEc-CCeEEEEECCC--CceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCC
Q 039790 218 LVLGRQI-AVNRN-YICYGLK-LGNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~-Spdg~-~LasGs~-DG~IrIWd~~~--~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~ 291 (1395)
.+..+.+ ++++. +++..+. |+.+++||... .....+..|...|.+++| .+++.++++++. |+.+++|++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE-CCCCCEEEecCCCCCceEEEEcCCCc
Confidence 5566666 77777 5555444 99999999997 567889999999999999 888888998886 9999999999755
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.+.....|...+.++.|++++..++++ +.++.+..|+.. .+.. ..
T Consensus 190 --------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~-------------------~~ 235 (466)
T COG2319 190 --------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKL-------------------LR 235 (466)
T ss_pred --------------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcE-------------------Ee
Confidence 345555588899999999888755555 556666655332 1111 23
Q ss_pred -EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 371 -LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 371 -~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
.+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+.+|.. .|.++.|. |++..+++++ .|+.
T Consensus 236 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~~-~d~~ 307 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFS----PDGKLLASGS-SDGT 307 (466)
T ss_pred eecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEEC----CCCCEEEEee-CCCc
Confidence 466787775 44899998 7899999999999999987764 555567765 99999998 8888998855 7799
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEe--ccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLE--LKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~--~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~~~~~ 525 (1395)
+++||..+. ....... .|...+ ..+.+.+++..++.+ ..|+.+++|++....
T Consensus 308 ~~~~~~~~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---- 362 (466)
T COG2319 308 VRLWDLETG------------KLLSSLTLKGHEGPV---------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---- 362 (466)
T ss_pred EEEEEcCCC------------ceEEEeeecccCCce---------EEEEECCCCCEEEEeecCCCcEEeeecCCCc----
Confidence 999998876 4444444 444322 235554343555555 688999999988753
Q ss_pred cceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCceeeecc---cceEEecCCCCC-eecccCCCceEEEe
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQYAL---DLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~~~~---~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
.......... ...+.+.. ..... ...++.+.+|+........... .......+..+. ......+...+++|
T Consensus 363 -~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 -PLKTLEGHSN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred -eeEEecCCce-EEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 0011111110 11122222 10111 2467899999999987643222 233333333333 33334456777899
Q ss_pred ecCC
Q 039790 600 DVAN 603 (1395)
Q Consensus 600 D~~t 603 (1395)
+..+
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9887
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=156.44 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=174.5
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCC---------C--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIIT---------A--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~---------~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..|..-+|+|.++||+.|..+|.|.|+.++. + .+..+++|.++|+.++|+ ..+|++|+. |.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEe
Confidence 3455668999999999999999999999865 1 345668999999999993 567777765 999999
Q ss_pred ECCCCCC-CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPD-EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~-~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
..+.... ...++...- ....+.-.-.-..|+.+-..|..+.++.+|.++.++.||... ++.
T Consensus 87 ~W~E~~es~~~K~lwe~--~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i--------------- 148 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEV--KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRI--------------- 148 (325)
T ss_pred eehhhhhhccchhhhhh--cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEE---------------
Confidence 8876442 111111000 011111111224567788899999999999888888887743 221
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---------CCCCCeeEEEEeecCCCC
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---------YDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---------h~~~~V~sV~fs~~~~pd 435 (1395)
.+.+.||++.|.++.--... ..+++|+.||++||||.++++++.++.. |-+.+|-+++-+
T Consensus 149 ----~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~------ 217 (325)
T KOG0649|consen 149 ----QREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN------ 217 (325)
T ss_pred ----EEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc------
Confidence 57889999999999984433 4799999999999999999999988753 444577777764
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
..||+++| ...+.||+++.. .|..+|...... ..+.| +...+++++..+.|.-|
T Consensus 218 edWlvCGg--Gp~lslwhLrss------------e~t~vfpipa~v----------~~v~F--~~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 218 EDWLVCGG--GPKLSLWHLRSS------------ESTCVFPIPARV----------HLVDF--VDDCVLIGGEGNHVQSY 271 (325)
T ss_pred CceEEecC--CCceeEEeccCC------------CceEEEecccce----------eEeee--ecceEEEeccccceeee
Confidence 67888754 678999999987 666666544321 12333 34567778888889888
Q ss_pred EcCC
Q 039790 516 HMDY 519 (1395)
Q Consensus 516 dl~~ 519 (1395)
.+..
T Consensus 272 ~l~G 275 (325)
T KOG0649|consen 272 TLNG 275 (325)
T ss_pred eecc
Confidence 8753
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=164.75 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=189.7
Q ss_pred CCCCEEEEEEecCC----CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 215 DPGLVLGRQIAVNR----NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Spdg----~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
|....+.++|+.|- -++|.|+.-|.|||.|+..+. ...+.+|.+.|+.|.|++.+.+++++|+.|.+||+|++.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 55566777887643 489999999999999999884 6789999999999999777789999999999999999999
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC------CccccccCCCCCc-cCc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV------GKGERFSAEEPLK-CPV 362 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~------~~~~~~s~~~~~~-~~~ 362 (1395)
.. ++..+--..+|.+.|.++.|+.++.+++++|.+..+..|..... .....|+.++..+ ...
T Consensus 168 ~~-----------Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 168 DV-----------CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred Ce-----------EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 87 22233334568889999999999999999999999999887621 1111222222110 000
Q ss_pred cccccc-eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-C-------------ceeEEecCCCCCCeeEEE
Q 039790 363 DELING-VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-S-------------TPLAVLRPYDGHPVNCVT 427 (1395)
Q Consensus 363 ~~~~~~-~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g-------------~~l~tl~~h~~~~V~sV~ 427 (1395)
-...-+ ...-..|...|-|+.|- | .++++-|.++.|..|-... + ..+.++.-... .|+-+.
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfir 312 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIR 312 (385)
T ss_pred cccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEE
Confidence 000000 12344689999999986 3 6899999999999997621 1 22344444444 677777
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|.-+ +-+++|+.++ ..|.|.+||++..+. ..+........+. .++-.+|+.||.+|+..+
T Consensus 313 f~~d--~~~~~la~gn-q~g~v~vwdL~~~ep---------~~~ttl~~s~~~~--------tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 313 FAFD--PWQKMLALGN-QSGKVYVWDLDNNEP---------PKCTTLTHSKSGS--------TVRQTSFSRDGSILVLVC 372 (385)
T ss_pred Eeec--HHHHHHhhcc-CCCcEEEEECCCCCC---------ccCceEEeccccc--------eeeeeeecccCcEEEEEe
Confidence 6522 6678888866 999999999998722 1222222211111 223589999999999999
Q ss_pred CCCeEEEEEc
Q 039790 508 KKNAIYAIHM 517 (1395)
Q Consensus 508 ~Dg~I~iWdl 517 (1395)
+|++|.-||.
T Consensus 373 dd~~Vwrwdr 382 (385)
T KOG1034|consen 373 DDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEEe
Confidence 9999999985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-15 Score=160.92 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=192.3
Q ss_pred EeccCCCCeEEEEEee----CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe--cCCCCCccEEEEeCC
Q 039790 252 LLRGHTQRVTDMAFFA----EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL--ADGDSVHPRVCWHPH 325 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s----~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~--~~~~~~v~~v~~sp~ 325 (1395)
...+|+..|..++|++ .....+++.|.+ ++.||...... .+..++.+ .+++...+.++|+-+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~-----------~ir~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDG-----------GIRLLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcc-----------ceeeeeeccCCCCCcceEEEEEEec
Confidence 4457889999999942 123456666654 78888876432 22333333 345667778888765
Q ss_pred CC----eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 326 KQ----EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 326 ~~----~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
.. .++++|.-|.|.+++.....- ...+.+|...|+.+.|+|+.+++|+++|.|..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~--------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQC--------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhh--------------------ccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 32 455556556666666543211 455778999999999999998999999999999
Q ss_pred EEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC--CCCCCC----CcccccEE
Q 039790 402 KIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE--GWLLPS----DIESWKCT 472 (1395)
Q Consensus 402 rIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~--~~~~~~----~~~~~~~l 472 (1395)
|+||+++..|+..|- ||.+ .|.+|.|+ ++|.+|+++| .|.+|++|++...+ ..+..+ ..++....
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~----~~gd~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRD-EVLSVDFS----LDGDRIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred EEEeccCCeEEEEecccccccC-cEEEEEEc----CCCCeeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 999999999999875 6776 99999999 9999999988 99999999998541 111000 00111000
Q ss_pred EEEeccCcc--cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc-CCCCC-----CCCcceeeeeeeeccc-----c
Q 039790 473 QTLELKSSA--ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM-DYGPN-----PASTRMDYIAEFTVTM-----P 539 (1395)
Q Consensus 473 ~tl~~h~~~--i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl-~~g~~-----~~~~~~~~i~~f~~~~-----~ 539 (1395)
-+...|-.. ....+..|+.+ +.| -|.++++-+.+|.|..|.. ..++. +.......+.+|.... .
T Consensus 235 pt~~~~fp~fst~diHrnyVDC-vrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDC-VRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred CccccccccccccccccchHHH-HHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 000000000 11122222222 222 2689999999999999997 33222 1222344566666553 2
Q ss_pred EEEEecCCCCcC--cCCCCeEEEEEcCCCceeee-------cccceEEecCCCCC-eecccCCCceEEEeecC
Q 039790 540 ILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQY-------ALDLSQCLPPPLEN-AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 540 ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~~-------~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~ 602 (1395)
.++|+... +.+ ....|.|++||+..-+-..+ ......-..|+.|+ +.+.-.|.+.+.-||..
T Consensus 312 rf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 34444443 333 24578999999988644211 11223344566665 44444466776678754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=167.20 Aligned_cols=256 Identities=14% Similarity=0.139 Sum_probs=182.7
Q ss_pred cceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 207 TPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
..+..+..|.+.|.++.|+| +-..|.+.++||+||.-|++++. +..+......+.++.| +.+...++.++.=|.+
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNF 303 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc-cCCCccEEEeecccce
Confidence 34567788999999999999 45678888999999999999873 3444434556788888 5555566667777799
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE-EEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL-KIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii-~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+||++++..+ +....-|+..|+.++++|...+++++++-+... +||.+.......
T Consensus 304 ~~iD~R~~~s~-------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------- 360 (498)
T KOG4328|consen 304 NVIDLRTDGSE-------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------- 360 (498)
T ss_pred EEEEeecCCcc-------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------
Confidence 99999998732 222334566889999999999888887766655 555554432210
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC----CCceeEEecCCCC---CC--eeEEEEeecC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDG---HP--VNCVTFLIGP 432 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~----sg~~l~tl~~h~~---~~--V~sV~fs~~~ 432 (1395)
++.....|...|.+..|||.|++ |+|.+.|.+|||||.. .-.++.++. |.. .+ .....|.
T Consensus 361 ------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~--- 429 (498)
T KOG4328|consen 361 ------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWD--- 429 (498)
T ss_pred ------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeC---
Confidence 12333459999999999999965 9999999999999983 334455554 321 12 3456787
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNA 511 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~ 511 (1395)
|+..+++++- .-..|-|+|-..+ +.+..|..... ..+..+..|+|-+. +++.+...|.
T Consensus 430 -P~~~li~vg~-~~r~IDv~~~~~~------------q~v~el~~P~~-------~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 430 -PDYNLIVVGR-YPRPIDVFDGNGG------------QMVCELHDPES-------STIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred -CCccEEEEec-cCcceeEEcCCCC------------EEeeeccCccc-------cccccceeecccccceeccCCccce
Confidence 8888888755 7888999998877 65655544332 12334678899888 5555557888
Q ss_pred EEEEEcC
Q 039790 512 IYAIHMD 518 (1395)
Q Consensus 512 I~iWdl~ 518 (1395)
||||--.
T Consensus 489 i~vft~k 495 (498)
T KOG4328|consen 489 IYVFTNK 495 (498)
T ss_pred EEEEecC
Confidence 9999643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-13 Score=159.49 Aligned_cols=331 Identities=18% Similarity=0.279 Sum_probs=227.3
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEeccCCC-CeEEEEEeeCCCC-EEEEEEC-CCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLLRGHTQ-RVTDMAFFAEDVH-LLASASV-DGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l~~H~~-~V~slaf~s~dg~-~LaSgs~-DgtV~IW 285 (1395)
.+..|...+.++.|..++..++.++.|+.+.+|+...+ ....+.++.. .+..+.+...++. +++.++. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45678899999999999999999999999999999988 4666766443 6777776323454 5555455 9999999
Q ss_pred ECCC-CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITE-GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~t-g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+.. .. .......|...+..++|++++..++.++. ++.+..|+... ..
T Consensus 140 ~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------- 189 (466)
T COG2319 140 DLSTPGK--------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GK--------------- 189 (466)
T ss_pred EecCCCe--------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-Cc---------------
Confidence 9987 33 45566677788889999999986666654 56666665533 11
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.+..+.+|...|.+++|++++..++++++.|+.|++||...+..+. .+.+|.. .+ ...|+ +++.+++++
T Consensus 190 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~~ 259 (466)
T COG2319 190 ----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFS----PDGSLLASG 259 (466)
T ss_pred ----eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeEC----CCCCEEEEe
Confidence 1566677999999999999883366666999999999999888888 6888976 54 33788 888777765
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCccccc-EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWK-CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~-~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ .|+.+++||+... . ++..+..|...+ ..+.|.+++..+++++.|+.+.+|++..+.
T Consensus 260 ~-~d~~~~~~~~~~~------------~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 260 S-SDGTIRLWDLRSS------------SSLLRTLSGHSSSV---------LSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred c-CCCcEEEeeecCC------------CcEEEEEecCCccE---------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 5 9999999999876 2 244444443332 246888888888889999999999887643
Q ss_pred CCCCcceeeee--eeeccccEEEEecCCCC--cC--c-CCCCeEEEEEcCCCce-eeeccc---ceEEecCCCCCeecc-
Q 039790 522 NPASTRMDYIA--EFTVTMPILSLTGTTTD--AS--P-DGEHIVQIYCVQTQAI-QQYALD---LSQCLPPPLENAELE- 589 (1395)
Q Consensus 522 ~~~~~~~~~i~--~f~~~~~ils~~~~~~d--~~--~-s~dg~V~lWdv~t~~i-~~~~~~---~~~cl~~s~d~l~~~- 589 (1395)
. ..... .+......+.+ . . + .+ . ..|+.+++|++..... ...... ...+..+ . ....+
T Consensus 318 ~-----~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 387 (466)
T COG2319 318 L-----LSSLTLKGHEGPVSSLSF-S-P-DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSS 387 (466)
T ss_pred e-----EEEeeecccCCceEEEEE-C-C-CCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEE
Confidence 2 11111 11111222233 2 1 1 11 1 3458899999998862 211111 2223333 3 32222
Q ss_pred cCCCceEEEeecCCCCcceeeccC
Q 039790 590 KTDSNATRAFDVANPDGSASLESS 613 (1395)
Q Consensus 590 ~sd~~v~~iWD~~tg~~~~~l~g~ 613 (1395)
......+.+|+.............
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
T COG2319 388 GSTDGTVRLWDLSTGSLLRNLDGH 411 (466)
T ss_pred ecCCCceEEEecccCeeeeeccCC
Confidence 345566779999988877666633
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-15 Score=170.19 Aligned_cols=228 Identities=25% Similarity=0.308 Sum_probs=168.6
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ- 327 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~- 327 (1395)
+-..++||++.|.+|.. .+.|.+|++|+.||+|+||.+.+|.| +..+.+ +..|.+|+|+|.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRc-----------vr~~~~----d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRC-----------VRTVQF----DSEIRSVAWNPLSDL 455 (733)
T ss_pred eeeeEeccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceE-----------EEEEee----cceeEEEEecCCCCc
Confidence 45678999999999999 88999999999999999999999982 223222 34789999999876
Q ss_pred eEEEEEeCCeEEEEEcCCCCcccc------c-cC---CC-CCccCccc------cccceEEEcccCCCeEEEEEecCCCc
Q 039790 328 EILMLAIGNRILKIDSNRVGKGER------F-SA---EE-PLKCPVDE------LINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~------~-s~---~~-~~~~~~~~------~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
.+++++.++.+.+++.....+... | .. .. ......|. ...++++...|...|+.|.|+..| .
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-D 534 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-D 534 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-c
Confidence 677888888866666543311111 1 11 00 00111222 334456666799999999999999 8
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
||++..-| ..|.|+++..+....-|.-..| .|.++.|. |...+|+++. -..|+|||+...
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FH----Ps~p~lfVaT--q~~vRiYdL~kq---------- 597 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFH----PSKPYLFVAT--QRSVRIYDLSKQ---------- 597 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhcCC-ceeEEEec----CCCceEEEEe--ccceEEEehhHH----------
Confidence 99987764 4589999988766666655555 89999997 8888888854 688999999876
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..+..+... +.+...+++++.|.-|+.|+.|+.+..+|+..+.
T Consensus 598 --elvKkL~tg---------~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 598 --ELVKKLLTG---------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred --HHHHHHhcC---------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 555444322 3344579999999999999999999999998764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=160.64 Aligned_cols=300 Identities=18% Similarity=0.226 Sum_probs=194.6
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCe
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN 239 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~ 239 (1395)
.|+||+.|..||+|-+.. ..++... ..+..+..+..|...|++|.|+++|.+||+|+.+|.
T Consensus 28 ~laT~G~D~~iriW~v~r-----------------~~~~~~~--~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNR-----------------SEPGGGD--MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred ceecccCccceeeeeeee-----------------cCCCCCc--eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 789999999999998431 1111100 122445678889999999999999999999999999
Q ss_pred EEEEECC--------C-----C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 240 IRILNII--------T-----A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 240 IrIWd~~--------~-----~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|.+|... + . ....+++|...|++++| ++++.++++++.|.++++||+..|.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~----------- 156 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQ----------- 156 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc-cCCCceeeeeeccceEEEEEeccce-----------
Confidence 9999876 3 1 24578899999999999 9999999999999999999999998
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC-CCccCccccccceEEEcccCC----
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE-PLKCPVDELINGVQLVGKHDG---- 377 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~h~~---- 377 (1395)
.+....+|+..+..++|.|.++++..-+.+.....+............... ...........-.+.+ |++
T Consensus 157 ---l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlks 231 (434)
T KOG1009|consen 157 ---LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKS 231 (434)
T ss_pred ---eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhh
Confidence 567788899999999999999888777776533322221110000000000 0000000000112222 332
Q ss_pred CeEEEEEecCCCcEEEEEeC----CCcE-----EEEeCCC-CceeEEecCCCCCCeeEEEEeecC--------------C
Q 039790 378 EITELSMCQWLTTRLASASL----DGTV-----KIWDDRK-STPLAVLRPYDGHPVNCVTFLIGP--------------H 433 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~----Dg~I-----rIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~--------------~ 433 (1395)
....++|+|+| .+|++.+. ++.+ ++|+-.. .+++..+.+... ++..+.|+|-. -
T Consensus 232 FFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 232 FFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred hhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEecccccccccccc
Confidence 35678999998 68877642 2322 3443221 244455555444 55666665110 0
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
|.+-.++.+ ....|.|||..+. ..+.... .|-..++ -++|+.||..|+..+.||..
T Consensus 310 pyrlvfaiA--t~~svyvydtq~~------------~P~~~v~nihy~~iT---------Diaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 310 PYRLVFAIA--TKNSVYVYDTQTL------------EPLAVVDNIHYSAIT---------DIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred ccceEEEEe--ecceEEEeccccc------------cceEEEeeeeeeeec---------ceeecCCCcEEEEeccCCce
Confidence 334444554 3678999998775 3333322 2333333 38999999999999999988
Q ss_pred EEEEcCCC
Q 039790 513 YAIHMDYG 520 (1395)
Q Consensus 513 ~iWdl~~g 520 (1395)
-+.-++..
T Consensus 367 S~vtfe~~ 374 (434)
T KOG1009|consen 367 SLVTFEPW 374 (434)
T ss_pred EEEEEcch
Confidence 77777653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=169.89 Aligned_cols=269 Identities=14% Similarity=0.178 Sum_probs=192.8
Q ss_pred cCCCCCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe
Q 039790 176 KVPKGRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL 253 (1395)
Q Consensus 176 ~sp~Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l 253 (1395)
+.|||..| +.+++++.++.. ++..+.++++|.+.|+|++|+.||+++|+|+.|..|.||+-.-.-...
T Consensus 20 fkPDGsqL~lAAg~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk- 89 (1081)
T KOG1538|consen 20 FKPDGTQLILAAGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK- 89 (1081)
T ss_pred ECCCCceEEEecCCEEEEEeCC---------CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-
Confidence 66888877 556777777765 346678899999999999999999999999999999999876432222
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
..|++.|.||.| .|-.+.|+||+-. ..-+|........ .......+.++.|..+|.+++.+-
T Consensus 90 YSH~D~IQCMsF-NP~~h~LasCsLs-dFglWS~~qK~V~----------------K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 90 YSHNDAIQCMSF-NPITHQLASCSLS-DFGLWSPEQKSVS----------------KHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eccCCeeeEeec-CchHHHhhhcchh-hccccChhhhhHH----------------hhhhheeEEEeeecCCCcEEEEec
Confidence 359999999999 7888899999875 5778887654310 011233456789999997555544
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC----cEEEEEeCCCcEEEEeCCCC
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT----TRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~----~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.+|+ +.+.... +.. ...+..-+|....|++++|+|..+ ..++...+..++.+|.+. |
T Consensus 152 ~nGT-IsiRNk~-gEe----------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G 212 (1081)
T KOG1538|consen 152 FNGT-ISIRNKN-GEE----------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-G 212 (1081)
T ss_pred cCce-EEeecCC-CCc----------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-c
Confidence 4444 4444322 111 001344456788999999998742 378888888888888764 4
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
+.+..-+.-. ....|+.|. ++|.+++.+| .|+.+++|-- .| ..+.++-. .+.
T Consensus 213 ~~Igk~r~L~-FdP~CisYf----~NGEy~LiGG-sdk~L~~fTR-~G------------vrLGTvg~---------~D~ 264 (1081)
T KOG1538|consen 213 KQIGKDRALN-FDPCCISYF----TNGEYILLGG-SDKQLSLFTR-DG------------VRLGTVGE---------QDS 264 (1081)
T ss_pred eeecccccCC-CCchhheec----cCCcEEEEcc-CCCceEEEee-cC------------eEEeeccc---------cce
Confidence 4443222221 246788888 9999999988 8999999953 23 44444432 344
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|.+.+...|++..++.|+.||+|--|++-.
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 556789999999999999999999998865
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=183.25 Aligned_cols=268 Identities=15% Similarity=0.222 Sum_probs=194.1
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+-++++.+|...|+|+.|...|.||++|+.|..|+||..+++ ++..++||.+.|++++. +.+..++++++.|..|++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlav-s~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAV-SSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhcc-chhhhhhhhcccCceEEE
Confidence 3567788999999999999999999999999999999999987 68899999999999999 788889999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc------ccccCCCCC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG------ERFSAEEPL 358 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~------~~~s~~~~~ 358 (1395)
|.+.++. .+.++.+|.+.|+.++|+|-. +..+++.+++|+.+.... ..|... .+
T Consensus 259 Wrl~~~~--------------pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~-~~ 318 (1113)
T KOG0644|consen 259 WRLPDGA--------------PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK-DL 318 (1113)
T ss_pred EecCCCc--------------hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccc-cc
Confidence 9999987 566778899999999999965 344444555554442110 011111 11
Q ss_pred cc-----Ccccc-ccc----------eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCC
Q 039790 359 KC-----PVDEL-ING----------VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP 422 (1395)
Q Consensus 359 ~~-----~~~~~-~~~----------~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~ 422 (1395)
.| ..|.. ..+ .-.+..|...+.-+.++.|-..+.+++-.+-.+++|++.+|..++.+.+|.. .
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~ 397 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-E 397 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-c
Confidence 11 00000 000 0011122222333333333324566666778899999999999999999987 9
Q ss_pred eeEEEEeecCCCCCcEE-EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCC
Q 039790 423 VNCVTFLIGPHPQHIVL-ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L-~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++.+.|. |-+..+ .++| .||...|||+..| ..++.+. +|...+ ...||.||
T Consensus 398 ~yvLd~H----pfn~ri~msag-~dgst~iwdi~eg------------~pik~y~~gh~kl~----------d~kFSqdg 450 (1113)
T KOG0644|consen 398 VYVLDVH----PFNPRIAMSAG-YDGSTIIWDIWEG------------IPIKHYFIGHGKLV----------DGKFSQDG 450 (1113)
T ss_pred eeeeeec----CCCcHhhhhcc-CCCceEeeecccC------------Ccceeeecccceee----------ccccCCCC
Confidence 9999997 766554 4555 9999999999887 5555544 333221 27899999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCC
Q 039790 501 LFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..++....-|.+||.....++.
T Consensus 451 ts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceEecCCCCCceEEeccCCCcc
Confidence 9999999999999987765544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=152.53 Aligned_cols=266 Identities=16% Similarity=0.181 Sum_probs=185.5
Q ss_pred eeeeCCCCCEEEEEEec-CCCEEEEEEcC-------CeEEEEECCCC----------ceEEec-cCCCCeEEEEEeeCCC
Q 039790 210 TKYISDPGLVLGRQIAV-NRNYICYGLKL-------GNIRILNIITA----------LRSLLR-GHTQRVTDMAFFAEDV 270 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Sp-dg~~LasGs~D-------G~IrIWd~~~~----------~~~~l~-~H~~~V~slaf~s~dg 270 (1395)
..|..|.+.|+.++-+| |.++|+++..+ ..+.||.+... ++..|. .+-+.|.||.| .|++
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-~Pns 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-EPNS 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-cCCC
Confidence 35667888999998888 55667776542 34779998653 222333 46679999999 7899
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
..|++-. |..|.+|++..+..+.. .........+....++-.|+| +....+++..++.+..||.+.....
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~va--------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVA--------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchhe--------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 9988876 78999999998763110 001111122344566788999 4557788888888888888754332
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEE
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTF 428 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~f 428 (1395)
..+-..|...|.++.|+|+-..+||+|+.||.|||||.|.- .+++++.+|.- +|++|.|
T Consensus 207 -------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRf 266 (370)
T KOG1007|consen 207 -------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRF 266 (370)
T ss_pred -------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEe
Confidence 23345688999999999998779999999999999999974 78999999986 9999999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCC--CCCCCC-------C--c------ccccEEEEEeccCcccccccccccc
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEE--GWLLPS-------D--I------ESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~--~~~~~~-------~--~------~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
. |....|+-+|+.|..|.+|....-. ..+... + . -....+.+|..|.+.+++
T Consensus 267 n----~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~------- 335 (370)
T KOG1007|consen 267 N----PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA------- 335 (370)
T ss_pred c----CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE-------
Confidence 8 6554444445599999999875431 111000 0 0 112334567777766554
Q ss_pred eEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 039790 492 QVVALNR-AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 492 ~~l~~S~-dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
++||. |.-++++-+.||.+.|=.+.
T Consensus 336 --~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 --LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred --EeeccCCCeeEEEeccCceEEeecCC
Confidence 66655 55566778899999886654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-14 Score=155.65 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=182.1
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ceEEec--cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LRSLLR--GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
.+.+.+|.+.|.++.|+.++++||+|+.|..++||+++.. +-..+. .|...|+|++| .....+|.+|+.+|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-DLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-ccCCeeEecCCCcc
Confidence 3466789999999999999999999999999999998753 112233 35578999999 66678999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+|...|+.+.+ .+.++.+ ..+.|+.+..+|..+.++++..++.+.+||.+......
T Consensus 128 ~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~-------- 185 (609)
T KOG4227|consen 128 TVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI-------- 185 (609)
T ss_pred eeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC--------
Confidence 99999999876 4444433 34578899999998777777777777777765432110
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCC-----CCeeEEEEeecC
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDG-----HPVNCVTFLIGP 432 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~-----~~V~sV~fs~~~ 432 (1395)
....+.......+++.|+|..+.+|++.+..+-+-+||++.. .++....+..+ ..-.++.|+
T Consensus 186 ---------~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~--- 253 (609)
T KOG4227|consen 186 ---------SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS--- 253 (609)
T ss_pred ---------ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC---
Confidence 023344456678899999999899999999999999999864 33333322221 123678899
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-cccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
|.|..|++.- .-..-.+||+-+. +|. .|+..... .++ ..+. ...++|-.| .-+++|+.+-.
T Consensus 254 -~~G~Q~msiR-R~~~P~~~D~~S~------------R~~-V~k~D~N~~GY~-N~~T-~KS~~F~~D-~~v~tGSD~~~ 315 (609)
T KOG4227|consen 254 -PSGNQFMSIR-RGKCPLYFDFISQ------------RCF-VLKSDHNPNGYC-NIKT-IKSMTFIDD-YTVATGSDHWG 315 (609)
T ss_pred -CCCCeehhhh-ccCCCEEeeeecc------------cce-eEeccCCCCcce-eeee-eeeeeeecc-eeeeccCcccc
Confidence 9998888754 4445567888764 332 22222111 111 1111 124666444 44899999999
Q ss_pred EEEEEcCCCC
Q 039790 512 IYAIHMDYGP 521 (1395)
Q Consensus 512 I~iWdl~~g~ 521 (1395)
|++|.+....
T Consensus 316 i~~WklP~~~ 325 (609)
T KOG4227|consen 316 IHIWKLPRAN 325 (609)
T ss_pred eEEEecCCCc
Confidence 9999997644
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=156.34 Aligned_cols=191 Identities=19% Similarity=0.313 Sum_probs=136.4
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
..+|++..+|.|++||..++ .+..|++|...++.+.|.+. ..+.+.+|+.||+|++||++...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-----------~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-----------R 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-----------h
Confidence 67999999999999999997 47789999999999999544 56789999999999999999865211 1
Q ss_pred EEEecCCCCCccEEEEeCC-CCeEEEEEe-----CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 307 IQILADGDSVHPRVCWHPH-KQEILMLAI-----GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~-~~~lla~g~-----~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
+.+....... -++|..+ ...++++|. +-.++.||.+...+. + ......|.+.|+
T Consensus 110 ~~~~~~~~~~--f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l----------~~~~eSH~DDVT 169 (376)
T KOG1188|consen 110 ISWTQQSGTP--FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--------L----------RQLNESHNDDVT 169 (376)
T ss_pred eeccCCCCCc--ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--------h----------hhhhhhccCcce
Confidence 1111111122 3444443 335666664 233555554432221 0 234567999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++.|+|.++++|+|||.||.|.|||+..- .++.++. |.. .|.++.|. .++ +.|.+- +...+..+|++.
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~s-SI~~igw~----~~~ykrI~cl-TH~Etf~~~ele 242 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGS-SIHLIGWL----SKKYKRIMCL-THMETFAIYELE 242 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccc-eeeeeeee----cCCcceEEEE-EccCceeEEEcc
Confidence 99999999999999999999999998754 2344443 544 79999998 555 223333 378999999998
Q ss_pred CC
Q 039790 456 EE 457 (1395)
Q Consensus 456 tg 457 (1395)
.+
T Consensus 243 ~~ 244 (376)
T KOG1188|consen 243 DG 244 (376)
T ss_pred CC
Confidence 87
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-14 Score=155.43 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=161.0
Q ss_pred eeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 211 KYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+.||.+.|..++|+| +...||+|+.|.+|.||.+-.+ .+..|.||..+|.-|+||+.-.+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 6678999999999999998764 366899999999999998888899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|.|||+.+|. .+..+. |.+.|++++|+.+|..++.++.+++|.+||.+...-
T Consensus 156 v~iWnv~tge--------------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------------- 207 (472)
T KOG0303|consen 156 VSIWNVGTGE--------------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------------- 207 (472)
T ss_pred EEEEeccCCc--------------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-------------
Confidence 9999999998 222233 889999999999999999999999999888755321
Q ss_pred ccccccceEEEcccCC-CeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCC
Q 039790 362 VDELINGVQLVGKHDG-EITELSMCQWLTTRLASAS---LDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~-~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+..-.+|.+ .-..+.|-.+| .++.||- .+..+-+||-..- -.+.++.... .|.---|. +
T Consensus 208 -------v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD----~ 273 (472)
T KOG0303|consen 208 -------VSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYD----P 273 (472)
T ss_pred -------eeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeec----C
Confidence 222234655 23455666676 5444443 3678999986553 3455665554 47666776 8
Q ss_pred CCcEEEEEecCCCeEEEEECCCC
Q 039790 435 QHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|...+..+|..|+.||.|.+...
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCC
Confidence 88899999999999999999876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=158.48 Aligned_cols=174 Identities=22% Similarity=0.245 Sum_probs=138.2
Q ss_pred CCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 216 PGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
...|..+.|..+.. .||+|+.|..||||.+..+ -...|..|...|+++.| +++|++|+||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-SPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-cCCcCeeeecCCCceEEE
Confidence 46788999998776 9999999999999988763 13467889999999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|....-.. . ..+. .... ... . |
T Consensus 92 Wk~~~~~~---~---------------~~d~---e~~~------------~ke-------------------~-----w- 113 (434)
T KOG1009|consen 92 WKQGDVRI---F---------------DADT---EADL------------NKE-------------------K-----W- 113 (434)
T ss_pred EEecCcCC---c---------------cccc---hhhh------------Ccc-------------------c-----e-
Confidence 98774210 0 0000 0000 000 0 0
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.-.+.+.+|...|++++|++++ .++++++.|..+++||+..|..+..+..|+. .|..++|. |-++++++-+
T Consensus 114 --~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawD----pl~qyv~s~s- 184 (434)
T KOG1009|consen 114 --VVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWD----PLNQYVASKS- 184 (434)
T ss_pred --EEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccc-ccceeecc----hhhhhhhhhc-
Confidence 0035567899999999999999 8999999999999999999999999999997 99999998 9999999876
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|...+++++...
T Consensus 185 ~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 185 SDRHPEGFSAKLK 197 (434)
T ss_pred cCcccceeeeeee
Confidence 7887777776543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=166.24 Aligned_cols=259 Identities=13% Similarity=0.119 Sum_probs=186.5
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
..++..|.+.|..++|.+....|++|+.||+|.+|++... .+.+|++|.++|.|+++ +.++..+++||.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-PSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-cCCceEEEeeccC
Confidence 3477789999999999999999999999999999999331 57899999999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|+.|++..... .+. .-........+.+|.+.++.+++|.....++.+..++++..|.......
T Consensus 366 g~I~~w~~p~n~d--p~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----------- 430 (577)
T KOG0642|consen 366 GTIRCWNLPPNQD--PDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----------- 430 (577)
T ss_pred ceeeeeccCCCCC--ccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----------
Confidence 9999998773221 110 0011112345567888899999999999888888888888887754322
Q ss_pred cCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC------CCCeeEEEEeec
Q 039790 360 CPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD------GHPVNCVTFLIG 431 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~------~~~V~sV~fs~~ 431 (1395)
.+|.. -.+.-.+|+|-.......++...-+.--++|...+..+..+..-. ...+..|.+.
T Consensus 431 ----------~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-- 498 (577)
T KOG0642|consen 431 ----------CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-- 498 (577)
T ss_pred ----------cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec--
Confidence 11111 122334555543321222222223333344444454444443211 0146777776
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
|.+.+.+++. .|+.|+++|..++ ..+.....|...+. ++++.++|-+|++++.|+.
T Consensus 499 --~~~~~~~~~h-ed~~Ir~~dn~~~------------~~l~s~~a~~~svt---------slai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 499 --PTADITFTAH-EDRSIRFFDNKTG------------KILHSMVAHKDSVT---------SLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred --CCCCeeEecc-cCCceeccccccc------------ccchheeeccceec---------ceeecCCCceEEeecCCce
Confidence 8999999877 9999999999998 88887777776654 4999999999999999999
Q ss_pred EEEEEcCC
Q 039790 512 IYAIHMDY 519 (1395)
Q Consensus 512 I~iWdl~~ 519 (1395)
|++|.+..
T Consensus 555 v~l~kld~ 562 (577)
T KOG0642|consen 555 VRLWKLDV 562 (577)
T ss_pred eehhhccc
Confidence 99999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=163.20 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=183.3
Q ss_pred EecCCCEEEEE--EcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 224 IAVNRNYICYG--LKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 224 ~Spdg~~LasG--s~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|..+..++|+- +..|.|-||+++.. .+-.+. ....|+++.|.+-|...|+.++.||.|++|.+..+...+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 44566666653 44689999999863 122222 3357999999878899999999999999999988763221
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
....-..+..|...|+.+.|||-...++++++.+..+.+|+...+.. ...+.+|
T Consensus 666 -------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-------------------~~~l~gH 719 (1012)
T KOG1445|consen 666 -------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-------------------YSRLVGH 719 (1012)
T ss_pred -------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-------------------hheeccC
Confidence 11223455667888999999998888888877776666666554332 4567789
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~ 450 (1395)
.+.|.+++||||| +++|+.+.||+|++|+-+++ ++++.-++..+..--.|.|. -||+++++.| .| +.|.
T Consensus 720 tdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa----cdgr~viv~G-fdk~SeRQv~ 793 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA----CDGRIVIVVG-FDKSSERQVQ 793 (1012)
T ss_pred cCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE----ecCcEEEEec-ccccchhhhh
Confidence 9999999999999 89999999999999999987 56666655544456778888 8999999988 55 5688
Q ss_pred EEECCCCCCCCCCCCcccccEEEE--EeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCCCCCcc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQT--LELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGPNPASTR 527 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~t--l~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~~~~~~~ 527 (1395)
+||..+-. ...+.+ ++...... +-.+..| +.++++|-.|..|++|.+-+. ..+
T Consensus 794 ~Y~Aq~l~----------~~pl~t~~lDvaps~L----------vP~YD~Ds~~lfltGKGD~~v~~yEv~~e----sPy 849 (1012)
T KOG1445|consen 794 MYDAQTLD----------LRPLYTQVLDVAPSPL----------VPHYDYDSNVLFLTGKGDRFVNMYEVIYE----SPY 849 (1012)
T ss_pred hhhhhhcc----------CCcceeeeecccCccc----------cccccCCCceEEEecCCCceEEEEEecCC----Cce
Confidence 99876541 122333 22222211 1123344 457788889999999998773 446
Q ss_pred eeeeeeeeccc
Q 039790 528 MDYIAEFTVTM 538 (1395)
Q Consensus 528 ~~~i~~f~~~~ 538 (1395)
+..+..|....
T Consensus 850 ~lpl~~f~sp~ 860 (1012)
T KOG1445|consen 850 LLPLAPFMSPV 860 (1012)
T ss_pred eeecccccCCC
Confidence 66666666543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-13 Score=164.02 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=182.1
Q ss_pred ccccceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEE
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~La 274 (1395)
.++..+..+..|...|..++.+.. +.++++|+.||+|+|||...- ...++.-...++.++.+ ..+++.+|
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-~~~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-CGNGDQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-ccCCCeEE
Confidence 456778888889999988887764 599999999999999998651 22334435678888888 77899999
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-CCCc-cEEEEeCCCC--eEEEEEeCCeEEEEEcCCCCccc
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-DSVH-PRVCWHPHKQ--EILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-~~~v-~~v~~sp~~~--~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.++.||.|++.++.-..... ....+......+ .+.+ ..-+|..... .++.+...+.++.||.+....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~-------~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-- 1185 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSK-------RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-- 1185 (1431)
T ss_pred EEcCCCeEEEEEcccccccc-------ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--
Confidence 99999999999998632100 011112222221 2222 2223333222 344455566677776654321
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEee
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
. |.. ...-..+.|++++.+|.+ +++++|+..|.+.+||+|-+.++..+......+|..|..++
T Consensus 1186 ~-----------w~l-----k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1186 A-----------WRL-----KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred H-----------Hhh-----hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 1 111 112245789999999998 89999999999999999999999888632223888888762
Q ss_pred cCCCCCcEEEEEec-CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-cccc--c-------cccccceEEEEeCC
Q 039790 431 GPHPQHIVLITGGP-LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-AELR--L-------EDAFFNQVVALNRA 499 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs-~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-~i~~--~-------~~~~~~~~l~~S~d 499 (1395)
-. +...+.+++|+ ..+.|.+|++.+| .|..+|....+ .... . ....-...+.+...
T Consensus 1249 ~~-~~~S~~vs~~~~~~nevs~wn~~~g------------~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1249 TY-PQESVSVSAGSSSNNEVSTWNMETG------------LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK 1315 (1431)
T ss_pred cC-CCCceEEEecccCCCceeeeecccC------------cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC
Confidence 21 33357777776 7899999999998 55555543311 0000 0 00011113445556
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 039790 500 GLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++.+|+.|..|+.||....
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeecCCccceeeccCCCc
Confidence 678889999999999998764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=146.02 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=157.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-...|+|.+|+.|+..+|.+..+..|.||..... ..+++..|...|+.|+| .+..+.|++|+.|..-+||....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-ap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-APKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-cCCCCceeEccCCCCccccccCCC
Confidence 3478999999999999999999999999998876 46789999999999999 899999999999999999999543
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
. .+...+.+ ..+....++|.|+|.++.| ++|++..++.++...... . |-.. .+
T Consensus 88 ~----------~WkptlvL-lRiNrAAt~V~WsP~enkF-AVgSgar~isVcy~E~EN--------d-----WWVs--Kh 140 (361)
T KOG1523|consen 88 G----------TWKPTLVL-LRINRAATCVKWSPKENKF-AVGSGARLISVCYYEQEN--------D-----WWVS--KH 140 (361)
T ss_pred C----------eeccceeE-EEeccceeeEeecCcCceE-EeccCccEEEEEEEeccc--------c-----eehh--hh
Confidence 3 13333333 3456778899999999754 555555555444322111 1 1000 12
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------------------CCceeEEecCCCCCCeeEEEEeecC
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR------------------KSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~------------------sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
+.+.+...|++++|+|++ -+|+.|+.|+..|||... -|..+..+....+ +|..+.|+
T Consensus 141 ikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs--- 215 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFS--- 215 (361)
T ss_pred hCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeC---
Confidence 233577889999999998 899999999999998632 1234445544444 99999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCC
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|..|+-.| .|++|.+-|....
T Consensus 216 -~sG~~lawv~-Hds~v~~~da~~p 238 (361)
T KOG1523|consen 216 -PSGNRLAWVG-HDSTVSFVDAAGP 238 (361)
T ss_pred -CCCCEeeEec-CCCceEEeecCCC
Confidence 9999999988 9999999998765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-14 Score=149.18 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=183.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+...++.|.+.|+++.|-.+++ |.+|..-|.|++|++.+.. ...++ .|...|+.+.. -++ ..|.+-+.|+++.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~-~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQS-IPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceee-cCC-cchhhcCCCceEEE
Confidence 46677789999999999998886 8999999999999999873 55566 46778999887 454 67899999999999
Q ss_pred EECCCCCCCCCCcc------------c-ccceEE----------------------EEEEecC----CCCCccEEEEeC-
Q 039790 285 WNITEGPDEEDKPQ------------I-LGKIVV----------------------AIQILAD----GDSVHPRVCWHP- 324 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~------------~-~~~~i~----------------------~l~~~~~----~~~~v~~v~~sp- 324 (1395)
|++..+........ . ..+... .+.+..+ ..+.+.+..|.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 99987331110000 0 000000 0000000 112233333222
Q ss_pred CC-CeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 325 HK-QEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 325 ~~-~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
.+ ..++++|.. +.++.||.........|. .. | +-+.....|...|.++.|.+.. ..=++|+.+..+.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~-----~---kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~ 230 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QS-----S---KVESPNASHKQPVLSLDYASSC-DRGISGGADDKLV 230 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccc--cc-----c---ccccchhhccCcceeeeechhh-cCCcCCCccccce
Confidence 22 245555654 555666554422211110 00 1 1133445699999999998765 5667888888899
Q ss_pred EEeCCCC--ce----eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 403 IWDDRKS--TP----LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 403 IWDl~sg--~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
.|.+... .+ ..+++ |. .|..+.+- ||++.++++| +|+.||||..++. +.+..++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lk-np--Gv~gvrIR----pD~KIlATAG-WD~RiRVyswrtl------------~pLAVLk 290 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLK-NP--GVSGVRIR----PDGKILATAG-WDHRIRVYSWRTL------------NPLAVLK 290 (323)
T ss_pred eeeeccccCcccccceEEec-CC--CccceEEc----cCCcEEeecc-cCCcEEEEEeccC------------Cchhhhh
Confidence 9987643 22 11222 33 58999998 9999999999 9999999999998 8999999
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|...+. .++|+++..+++++++|+.|-+|++
T Consensus 291 yHsagvn---------~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVN---------AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhccee---------EEEeCCCCchhhhccCCceEEeeec
Confidence 9997654 4999999999999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-13 Score=148.00 Aligned_cols=289 Identities=12% Similarity=0.136 Sum_probs=191.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~~LasGs~ 236 (1395)
..++++-..|.||++|.. .+..+..|+++...+..+.|.. ..+.+.+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~----------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG----------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred eeEEEEecCCeEEEEecc----------------------------chhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence 567788888899998821 1234567788888899999987 5688999999
Q ss_pred CCeEEEEECCCC---ceEEeccCC-CCeEEEEEeeCCCCEEEEEEC----CCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 237 LGNIRILNIITA---LRSLLRGHT-QRVTDMAFFAEDVHLLASASV----DGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 237 DG~IrIWd~~~~---~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~----DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
||+||+||++.. .+..+..|. .+-.+++. .-+++++++|.. |-.|.+||++..+- . .-.
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----------~--l~~ 159 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQ----------L--LRQ 159 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccc----------h--hhh
Confidence 999999999985 245566666 34455555 335677777643 66799999998661 0 123
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+...|...|++++|||.+..++++|+-++++-+.+.+... ..+.+.....|...|.++.|..++
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~----------------EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN----------------EEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc----------------chhhHHHhhcccceeeeeeeecCC
Confidence 4567899999999999999988888866655544433221 111233344588899999999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCC--CCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPH--PQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~--pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
-..|.+-+..++..+|++..+.+...+....- .....+.+.-+.| .++..++.+|..-+...++-+...
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~---- 299 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT---- 299 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec----
Confidence 55789999999999999998876655542210 0111222211111 345555555533555555544321
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
......+.+..+.+++..+ ++.+.|...+.++.+|+.||.+.+|..+
T Consensus 300 --~s~~~~~~~a~l~g~~~ei--------VR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 300 --SSGSLLTEPAILQGGHEEI--------VRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred --ccccccCccccccCCcHHH--------HHHHhhhcccceeeccCCCceEEEEecC
Confidence 0002234455566644332 2246677889999999999999999964
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=146.93 Aligned_cols=254 Identities=12% Similarity=0.089 Sum_probs=160.0
Q ss_pred CCEEEEEEecCCCEEEEEE-cCCeEEEEECCC-CceEEec--cCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGL-KLGNIRILNIIT-ALRSLLR--GHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~-~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~ 291 (1395)
+....+.|+|++++|++++ .++.|.+|+++. +.+.... ...+....|+| ++++++|++++. ++.|.+|++.+..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~-~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST-DHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE-CCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4456789999999987764 478999999973 4332221 23345678999 889998887764 8899999997432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
... . .+..... ......++++|++++++++..+ +.+.+|+....+... .. .....
T Consensus 114 ~~~-------~---~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~---~~----------~~~~~ 169 (330)
T PRK11028 114 IPV-------A---PIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV---AQ----------EPAEV 169 (330)
T ss_pred CCC-------C---ceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc---cc----------CCCce
Confidence 100 0 1111111 2234568899999999888776 666666654322110 00 00000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCC--C--ceeEEecCCC----C-CCeeEEEEeecCCCCCcEEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASL-DGTVKIWDDRK--S--TPLAVLRPYD----G-HPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrIWDl~s--g--~~l~tl~~h~----~-~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+. .......++|+|+| ++|+++.. +++|.+||+.. + +.+..+..+. + .+...+.|+ |+|++|+
T Consensus 170 ~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~----pdg~~ly 243 (330)
T PRK11028 170 TTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT----PDGRHLY 243 (330)
T ss_pred ecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC----CCCCEEE
Confidence 111 12346789999998 66666655 89999999973 3 3344443211 1 133468898 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
++...++.|.+|++.... ...+.+..+.... ....+.+++||++|+++. .+++|.+|+++.
T Consensus 244 v~~~~~~~I~v~~i~~~~--------~~~~~~~~~~~~~----------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 244 ACDRTASLISVFSVSEDG--------SVLSFEGHQPTET----------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EecCCCCeEEEEEEeCCC--------CeEEEeEEEeccc----------cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 986568999999996541 1112233322211 112488999999888766 489999999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=158.49 Aligned_cols=229 Identities=21% Similarity=0.305 Sum_probs=172.2
Q ss_pred CeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|.+-|.-+... .+..+.+|.+.|+++.|++-+..+|++|+.|..|+||.+..|... ..-..-..+++
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q--------~LSape~~~g~ 126 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ--------KLSAPEIDVGG 126 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc--------ccCCcceeecC
Confidence 34555544432 355788999999999997777889999999999999999865411 11112234566
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
....+.++.|||....|++++..+.+++||...... ...+.+|.+.|.+..|+.|| .+|
T Consensus 127 ~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~--------------------~~el~~h~d~vQSa~WseDG-~ll 185 (1012)
T KOG1445|consen 127 GNVIVECLRFHPTADGILASGAHGSVYITDISTQKT--------------------AVELSGHTDKVQSADWSEDG-KLL 185 (1012)
T ss_pred CceEEEEeecccCcCceEEeccCceEEEEEcccCce--------------------eecccCCchhhhccccccCC-ceE
Confidence 677788999999999999999999999999865432 45567899999999999999 899
Q ss_pred EEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCCCCCCCCCCcc
Q 039790 393 ASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg~~~~~~~~~~ 467 (1395)
++++.|+.|+|||-|. ++++++..+|.+..=..|.|. .+...|+++| .+ +.|++||.+.. .
T Consensus 186 atscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~----Gn~~rlisTG-F~~~R~reV~~~Dtr~f---------~ 251 (1012)
T KOG1445|consen 186 ATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA----GNWERLISTG-FTTKRIREVRAYDTRKF---------G 251 (1012)
T ss_pred eeecCCcceEEeCCccCCCccccccccccchhheeeec----cchhhhhhcc-cchhhheeeeeeecccc---------C
Confidence 9999999999999986 589999999998777889997 5656888888 44 57999999875 2
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCE-EEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF-LLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~-LaSgs~Dg~I~iWdl~~ 519 (1395)
..+.++........ -.--|.+|.++ +++|-.++.|+.+.+..
T Consensus 252 --~p~~tleld~stGv--------LiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 252 --APVHTLELDSSTGV--------LIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred --CcceeEEeecccce--------EeeeecCCCceEEEecCCcceEEEEEecC
Confidence 34445544332210 12345677654 55666788888888765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-12 Score=152.00 Aligned_cols=307 Identities=16% Similarity=0.164 Sum_probs=209.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--C---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--A---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
.|.-.++|++++|+++++|+|..||.|.||.-.. + ..+.+.-|...|.+++| +.+|.+|+|||..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-SSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-ecCCceEeecccceEEEEEeec
Confidence 3556689999999999999999999999997544 2 46688899999999999 9999999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ -+++..-...+..+.|+|++....++..|+.|+.+...........+.-.+ + .
T Consensus 282 T~~---------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~--~-~------ 337 (792)
T KOG1963|consen 282 TGK---------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP--P-T------ 337 (792)
T ss_pred CCC---------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC--C-C------
Confidence 987 234455567788899999999999999999999987754432111100000 0 0
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCC-----CeeEEEEeecCCCCCcE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGH-----PVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~-----~V~sV~fs~~~~pdg~~ 438 (1395)
-.......+-.+.++++|.- +.++-.+..|.|.+||+.+...+..+. .+.+. .+++++++ -.|.+
T Consensus 338 ~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~----~~gs~ 412 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS----RFGSW 412 (792)
T ss_pred ccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh----ccceE
Confidence 00011234556788899955 688888999999999998877666553 12221 57788887 67999
Q ss_pred EEEEe-------cCC--CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeC
Q 039790 439 LITGG-------PLN--RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAK 508 (1395)
Q Consensus 439 L~s~G-------s~D--g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~ 508 (1395)
++|.- ..| -.+|+|-.... ...|.+...+...++. .+...+.+++... ..++++.
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~--------~kt~~L~T~I~~PH~~-------~~vat~~~~~~rs~~~vta~~ 477 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPN--------SKTFILNTKINNPHGN-------AFVATIFLNPTRSVRCVTASV 477 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCC--------cceeEEEEEEecCCCc-------eeEEEEEecCcccceeEEecc
Confidence 98853 123 35788987654 3455555555544322 2222334444444 8899999
Q ss_pred CCeEEEEEcCCCCCCC----CcceeeeeeeeccccEEEEecCC--CCcCcCCCCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYGPNPA----STRMDYIAEFTVTMPILSLTGTT--TDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~----~~~~~~i~~f~~~~~ils~~~~~--~d~~~s~dg~V~lWdv~t~ 566 (1395)
||.++||-+...++.. .-+++.+..|. ..++.+..+.. .-...+.|++|.|||-.+.
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCeEEEEEEecccccCcCccceEEeeeeccc-cCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 9999999996544322 12344555552 22333333222 0112467889999999984
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=136.16 Aligned_cols=260 Identities=15% Similarity=0.117 Sum_probs=169.3
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeE
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~i 338 (1395)
.|.+-+| ++.+++|+.|..+|+|.+..+.+-..-..++ .++ ..+.....|+..++.++|+. .++.+|.++.+
T Consensus 12 tvf~qa~-sp~~~~l~agn~~G~iav~sl~sl~s~sa~~--~gk--~~iv~eqahdgpiy~~~f~d---~~Lls~gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAI-SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP--PGK--LKIVPEQAHDGPIYYLAFHD---DFLLSGGDGLV 83 (325)
T ss_pred HHHHHhh-CCcceEEEEecCCCeEEEEEehhhhccccCC--CCC--cceeeccccCCCeeeeeeeh---hheeeccCceE
Confidence 4666778 8889999999999999999987643211111 111 12334478899999999982 45666666777
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
+-|.-....+.. -.-++|....+.+.-.-.--.|+++-..|.. +-++.++.|+.++-||+++|+..++++||
T Consensus 84 ~gw~W~E~~es~-------~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 84 YGWEWNEEEESL-------ATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred EEeeehhhhhhc-------cchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 776433222110 0013344444433311122368999999887 55666668999999999999999999999
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-ccccccceEEEEe
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-LEDAFFNQVVALN 497 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-~~~~~~~~~l~~S 497 (1395)
.+ .|.+|.-- .....+++++ .||++||||++++ +|++.+..-...... ++.+-+ ..++.
T Consensus 156 tD-YvH~vv~R----~~~~qilsG~-EDGtvRvWd~kt~------------k~v~~ie~yk~~~~lRp~~g~w--igala 215 (325)
T KOG0649|consen 156 TD-YVHSVVGR----NANGQILSGA-EDGTVRVWDTKTQ------------KHVSMIEPYKNPNLLRPDWGKW--IGALA 215 (325)
T ss_pred cc-eeeeeeec----ccCcceeecC-CCccEEEEecccc------------ceeEEeccccChhhcCcccCce--eEEEe
Confidence 98 99999984 3444567755 9999999999999 999888754433221 222222 46666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCC-CCeEEEEEcC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDG-EHIVQIYCVQ 564 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~-dg~V~lWdv~ 564 (1395)
-+..+|++|+. -.+.+|++...+ ..+-|....++-..++.. |.+ ..| .+.|.-|.+.
T Consensus 216 ~~edWlvCGgG-p~lslwhLrsse--------~t~vfpipa~v~~v~F~~-d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 216 VNEDWLVCGGG-PKLSLWHLRSSE--------STCVFPIPARVHLVDFVD-DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCceEEecCC-CceeEEeccCCC--------ceEEEecccceeEeeeec-ceEEEeccccceeeeeec
Confidence 77889988774 458999998743 233344333443444443 222 234 3467777653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-13 Score=153.78 Aligned_cols=275 Identities=13% Similarity=0.149 Sum_probs=185.5
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.|..++|.|||..|+.+.. ..+.|||.+.| .+.++++|.+.|++++| +.||.+|+||+.|..|.||.-.-..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAy-s~dGkrFASG~aDK~VI~W~~klEG----- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAY-AKDGKRFASGSADKSVIIWTSKLEG----- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEE-ccCCceeccCCCceeEEEecccccc-----
Confidence 7889999999998888765 47899999987 68899999999999999 9999999999999999999866422
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.+...|.+.+.|+.|+|-...+++++-.+ .-.|.. + ..-.......
T Consensus 87 -----------~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~-----------~-----------qK~V~K~kss 132 (1081)
T KOG1538|consen 87 -----------ILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP-----------E-----------QKSVSKHKSS 132 (1081)
T ss_pred -----------eeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh-----------h-----------hhhHHhhhhh
Confidence 12335678888999999886655554332 222211 1 1000111133
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCC-CcEEEEEecCCCeEEEEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQ-HIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pd-g~~L~s~Gs~Dg~I~IWD 453 (1395)
..|.+++|..|| .+|+.|-.||+|.|-+ .+|+....+. |..+.+|++++|+|+..+. ...+++.. ++.++.+|.
T Consensus 133 ~R~~~CsWtnDG-qylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~ 209 (1081)
T KOG1538|consen 133 SRIICCSWTNDG-QYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQ 209 (1081)
T ss_pred eeEEEeeecCCC-cEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEE
Confidence 568899999999 8999999999999986 4454444443 2223499999999554332 23455544 888888887
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+... .+. ... ...|-..++.+-++|.+++.|+.|+.+.+|--+. .++-.+.+
T Consensus 210 LsG~-------------~Ig----k~r-----~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------vrLGTvg~ 261 (1081)
T KOG1538|consen 210 LSGK-------------QIG----KDR-----ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------VRLGTVGE 261 (1081)
T ss_pred ecce-------------eec----ccc-----cCCCCchhheeccCCcEEEEccCCCceEEEeecC------eEEeeccc
Confidence 7542 111 110 1112223577779999999999999999986432 23334444
Q ss_pred eeccccEEEEecCCCCcC----cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS----PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~----~s~dg~V~lWdv~t~~ 567 (1395)
+ ...+++....+ ++. +.-||+|-.|++-...
T Consensus 262 ~--D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 262 Q--DSWIWTVQAKP-NSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred c--ceeEEEEEEcc-CCceEEEEEccCeeehhhhHHhH
Confidence 2 24555555444 322 2457788888765543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=156.78 Aligned_cols=299 Identities=15% Similarity=0.182 Sum_probs=185.9
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccC---CCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGH---TQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H---~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
.-..+.|++-...|+++...-.|+|||.+.+. +..|..+ ...|++|.+-. .|..++++|+.||.||||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34557788888899999877899999999874 3344333 35799999843 4566899999999999998543220
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. + .+. .-+|.+-.+ .+
T Consensus 1146 ~--~----~eL---------------VTaw~~Ls~-------------------------------------------~~ 1161 (1387)
T KOG1517|consen 1146 K--K----PEL---------------VTAWSSLSD-------------------------------------------QL 1161 (1387)
T ss_pred C--C----cee---------------EEeeccccc-------------------------------------------cC
Confidence 0 0 000 011111100 00
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+..+.-.-+.|....+ +|++++.-..|||||...-.+++.+....+..|+++.-+ ...|..+++ |..||.|++|
T Consensus 1162 ~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~---~~~gn~i~A-GfaDGsvRvy 1236 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD---LVHGNIIAA-GFADGSVRVY 1236 (1387)
T ss_pred ccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeeccc---ccCCceEEE-eecCCceEEe
Confidence 11112224466777664 455555578999999998888887765554477877665 134666666 5599999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE-EEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF-LLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~-LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
|.+.. .....+..++.|..... + -.+.+.+.|.- |++|+.||.|++||++....+....+.+-
T Consensus 1237 D~R~a---------~~ds~v~~~R~h~~~~~------I-v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1237 DRRMA---------PPDSLVCVYREHNDVEP------I-VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred ecccC---------CccccceeecccCCccc------c-eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 99876 22245667777776521 1 13677777765 99999999999999987532222222222
Q ss_pred eeeeccccEEEEecCCC-CcCcCCC-CeEEEEEcCCCce--eee-------cccceEEecCCCCC--eecccCCCceEEE
Q 039790 532 AEFTVTMPILSLTGTTT-DASPDGE-HIVQIYCVQTQAI--QQY-------ALDLSQCLPPPLEN--AELEKTDSNATRA 598 (1395)
Q Consensus 532 ~~f~~~~~ils~~~~~~-d~~~s~d-g~V~lWdv~t~~i--~~~-------~~~~~~cl~~s~d~--l~~~~sd~~v~~i 598 (1395)
.+|... ...++.... +.+++|. +.|+||++....+ ..+ .+....|+.|.+.. ++++ +++.++.+
T Consensus 1301 ~~yGs~--lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG-~~Ds~V~i 1377 (1387)
T KOG1517|consen 1301 WEYGSA--LTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG-SADSTVSI 1377 (1387)
T ss_pred cccCcc--ceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc-cCCceEEE
Confidence 333322 222232221 2233333 8899999987543 222 23335799999987 5555 45577767
Q ss_pred eecCCC
Q 039790 599 FDVANP 604 (1395)
Q Consensus 599 WD~~tg 604 (1395)
|-...+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 755433
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=153.63 Aligned_cols=313 Identities=14% Similarity=0.162 Sum_probs=208.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFF 283 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~ 283 (1395)
....+|..|.+.|..|.|...|..|++|+.|..|.+||+..+. +....||...|.--.|.+.. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456788999999999999999999999999999999998873 44556899999988885433 35699999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
+=.+.... .+........|.+.+..++..|+..+-|.++. ++.+..+|.+.......+
T Consensus 213 ~s~i~~t~-----------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~---------- 271 (559)
T KOG1334|consen 213 VSEILETG-----------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF---------- 271 (559)
T ss_pred eeeecccc-----------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee----------
Confidence 98876543 12223456678888999999998886555554 555556665443221111
Q ss_pred cccccceEEEcccCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------eeEEecCCC-----CCCeeEEEE
Q 039790 363 DELINGVQLVGKHDG---EITELSMCQWLTTRLASASLDGTVKIWDDRKST------PLAVLRPYD-----GHPVNCVTF 428 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~------~l~tl~~h~-----~~~V~sV~f 428 (1395)
.....+.. ..++++..|...+.|++|+.|-.+++||.+.-. .+..|-.|. .-.|++++|
T Consensus 272 -------~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 272 -------VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred -------eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 11222333 567899999887899999999999999987531 233333221 126999999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCCCC-CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEEGW-LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~-~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+ .++.-|+++- .|-.|+++.-..+++. ..++........+.|++|....+ +..+-.|-|...|+++|+
T Consensus 345 s----h~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T------VKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 345 S----HDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT------VKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred c----CCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhhcccccccc------cceeeeccCccceEEecC
Confidence 8 5665555544 6888999965544331 11222121222334888876543 223456678999999999
Q ss_pred CCCeEEEEEcCCCCCC----CCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYGPNP----ASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~----~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
+-|.|+||+-.+++.. +...+...-+-..+.|++.-.|. |.-|+||--.+-
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi--------d~DVKIWTP~~~ 468 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI--------DHDVKIWTPLTA 468 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC--------ccceeeecCCcc
Confidence 9999999998776421 11111111122223455544444 556999976553
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=141.27 Aligned_cols=199 Identities=17% Similarity=0.235 Sum_probs=149.0
Q ss_pred CCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 215 DPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
+...+++..|+. +-++|.+.+-|-+..|||++++ ....|-.|..+|++|+|.-..-+.|+++|.||.||+||++.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 456788888876 7799999999999999999997 35678899999999999433346899999999999999997
Q ss_pred CCCCCCCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEE--eCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLA--IGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g--~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
-.- .++-..... .....+++|++...+++++- ....++++|.+....
T Consensus 229 leH------------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------ 278 (364)
T KOG0290|consen 229 LEH------------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------ 278 (364)
T ss_pred ccc------------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------
Confidence 541 012122222 45566899999887666543 356677888755432
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
++..+.+|.+.|+.++|.|.....|+||+.|..+-|||+.+. .++..+. ..+ .|..+.|++ ..+.+++
T Consensus 279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~-EVNqi~Ws~---~~~Dwia 352 (364)
T KOG0290|consen 279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG-EVNQIQWSS---SQPDWIA 352 (364)
T ss_pred -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc-eeeeeeecc---cCCCEEE
Confidence 367788999999999999998889999999999999998753 2344444 223 899999982 2455676
Q ss_pred EEecCCCeEEE
Q 039790 441 TGGPLNRELKI 451 (1395)
Q Consensus 441 s~Gs~Dg~I~I 451 (1395)
.+ .++.+.|
T Consensus 353 i~--~~kklei 361 (364)
T KOG0290|consen 353 IC--FGKKLEI 361 (364)
T ss_pred EE--ecCeeeE
Confidence 64 4555554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=155.55 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=166.6
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE-EeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS-LLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~-~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWd 286 (1395)
..+.||.+.|.|+.|+.||.+|++|+.|-.+.|||....+ ++ .-.||...|+++.|-+. +..+++||..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 5678999999999999999999999999999999988653 33 44689999999999554 345789999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+...+.-. .+|.. .
T Consensus 124 l~~~~~~~----------------~d~~~--------------------------------------------------~ 137 (758)
T KOG1310|consen 124 LDSSKEGG----------------MDHGM--------------------------------------------------E 137 (758)
T ss_pred cccccccc----------------cccCc--------------------------------------------------c
Confidence 98644000 00000 0
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-ee------EE---ecCCCCCCeeEEEEeecCCCCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PL------AV---LRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l------~t---l~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.....+..|...|..|+-.|++++.|.+++.||+|+-||+|... |- .. +.+.-- ...|+..+ |..
T Consensus 138 ~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li-elk~ltis----p~r 212 (758)
T KOG1310|consen 138 ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI-ELKCLTIS----PSR 212 (758)
T ss_pred chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh-eeeeeeec----CCC
Confidence 11233445889999999999999999999999999999998731 11 11 111111 56788888 665
Q ss_pred cEEEEEecCCCeEEEEECCCCCC-----CC-CCCCcccccEEEEEeccCc-cccccccccc--ceEEEEeCCCCEEEEEe
Q 039790 437 IVLITGGPLNRELKIWASAEEEG-----WL-LPSDIESWKCTQTLELKSS-AELRLEDAFF--NQVVALNRAGLFLLANA 507 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~-----~~-~~~~~~~~~~l~tl~~h~~-~i~~~~~~~~--~~~l~~S~dg~~LaSgs 507 (1395)
.+++..|..|-..++||.+.... +. .+.+.....|++-|...+- ........++ ++-+.|+|+|.-|+..-
T Consensus 213 p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~ 292 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW 292 (758)
T ss_pred CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEee
Confidence 54444444899999999643311 11 1222344456766643221 1111111222 45688999998776666
Q ss_pred CCCeEEEEEcCCCCC
Q 039790 508 KKNAIYAIHMDYGPN 522 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~ 522 (1395)
....||++|+..++.
T Consensus 293 ~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 293 GGEHVYLFDVNEDKS 307 (758)
T ss_pred CCeEEEEEeecCCCC
Confidence 667799999998764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=142.42 Aligned_cols=302 Identities=11% Similarity=0.090 Sum_probs=202.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeC-CCCCEEEEEEecCCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYIS-DPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~-h~~~V~~va~Spdg~~ 230 (1395)
+.++..+..|++|+.|..+++|.+. +.+.....++|..... |...|.|++|....++
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~d----------------------e~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVD----------------------ELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechH----------------------HHHhhcCCCCceeccCccccceEEEEEccCCee
Confidence 4445566889999999999999833 0000111144544443 4589999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCCC---CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHTQ---RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~~---~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
|++|..+|+|..-|+++.+...+..|.. .|+.|.. +|..+.|++.+.+|.|.+||++.... .+ .+
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~-------~~----~~ 187 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQN-------PI----SL 187 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCC-------CC----ce
Confidence 9999999999999999987555555654 8999999 67789999999999999999997651 01 11
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..........+.+.|+|....++++... +++-+||.+...+.. +... ...-+......-..+.|+|
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~-~~~~------------~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV-YQRS------------MFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH-Hhhh------------ccccCcccchhhhheeeCC
Confidence 1223334556689999999988877764 556666665433210 1000 0011111112235678999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCC--C----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC-C
Q 039790 387 WLTTRLASASLDGTVKIWDDRKST-PLAVLRPYD--G----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE-E 458 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~--~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg-~ 458 (1395)
.| +.|.+--....-.+||+.+.+ ++..+. |. | ..+.+++|. +...+++ |+.+-.|++|.+... +
T Consensus 255 ~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~-----~D~~v~t-GSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 255 SG-NQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFI-----DDYTVAT-GSDHWGIHIWKLPRAND 326 (609)
T ss_pred CC-CeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeee-----cceeeec-cCcccceEEEecCCCcc
Confidence 98 677776666667788988744 344444 22 1 157788896 4444555 669999999998543 1
Q ss_pred CCC----------CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 459 GWL----------LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 459 ~~~----------~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+. .|+.....+.+..+++|.+.+.. +.|++...+|++.+-.+.++||.-
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ---------VRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ---------VRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccc---------eeecCCcceEeccchhhheecccc
Confidence 111 11222233455678888876544 899999999999999999999974
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=157.53 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=143.5
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IW 285 (1395)
..+..|...+.+..|+|||++|++++.+ ..|++||+.++....+....+....++| ++||++|+.++ .+|.+.||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~w-SPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAF-SPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeE-CCCCCEEEEEEecCCcEEEE
Confidence 4456677889999999999999998754 3699999998854444433334557899 89999888765 68876555
Q ss_pred --ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 --NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 --dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|+.++. +..+..+...+....|+|++..++.++. ++...+|.....+..
T Consensus 276 ~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------------- 327 (429)
T PRK01742 276 VMGANGGT---------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------------- 327 (429)
T ss_pred EEECCCCC---------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------------
Confidence 655544 1122334556778999999998877764 344444432211110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...+ ++.. .+..|+||| ++|+.++.++ +.+||+.++........+ ...++.|+ |||++|+.+
T Consensus 328 ------~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~s----PdG~~i~~~ 389 (429)
T PRK01742 328 ------ASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSIS----PNGIMIIYS 389 (429)
T ss_pred ------eEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceEC----CCCCEEEEE
Confidence 1222 2333 467899999 7887777765 556999988765433332 34678899 999999997
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
+ .++.+++|++... .+.+++.+..|.+.
T Consensus 390 s-~~g~~~~l~~~~~----------~G~~~~~l~~~~g~ 417 (429)
T PRK01742 390 S-TQGLGKVLQLVSA----------DGRFKARLPGSDGQ 417 (429)
T ss_pred E-cCCCceEEEEEEC----------CCCceEEccCCCCC
Confidence 7 7888888886431 11777888766654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=150.19 Aligned_cols=313 Identities=13% Similarity=0.174 Sum_probs=206.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..++|....++++-.||.|.+|.-+.. . .+....+.+.+|.+.|.+++|+++|.||
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~----------------~--------~~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGS----------------S--------DDSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccc----------------c--------cccccceEEEecccccceeEEecCCceE
Confidence 566777788888888888888873310 0 1113457889999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
.+|+..|.+.+|.+.++....|..-...|..+.+ ++|+++.+.+..|..|.+-...+...... +.+-.-..-....
T Consensus 267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~v-S~ds~~~sl~~~DNqI~li~~~dl~~k~t---Isgi~~~~~~~k~ 342 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVV-SPDSDLYSLVLEDNQIHLIKASDLEIKST---ISGIKPPTPSTKT 342 (792)
T ss_pred eecccceEEEEEeecCCCcccccccCCeeEEEEE-cCCCCeEEEEecCceEEEEeccchhhhhh---ccCccCCCccccc
Confidence 9999999999999999988778878889999999 89999999999999999988765431110 0000000000011
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
...+..+.++++|..+.++..|..+.+..++.........+. .| ......+ ...+...++.++++..| .+
T Consensus 343 ~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~-----v~-~~n~~~~---~~n~~v~itav~~~~~g-s~ 412 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ-----VC-DENYSDG---DVNIQVGITAVARSRFG-SW 412 (792)
T ss_pred cccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-----EE-eecccCC---cceeEEeeeeehhhccc-eE
Confidence 234455678888866677777778888777765432210000 00 0000000 00233457888888886 89
Q ss_pred EEEEe--------CCC--cEEEEeCCCC----ceeEE-ecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECC
Q 039790 392 LASAS--------LDG--TVKIWDDRKS----TPLAV-LRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASA 455 (1395)
Q Consensus 392 LaSgs--------~Dg--~IrIWDl~sg----~~l~t-l~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++|+- .|| .+|+|-.... .+... ...|.. .+...+|.. +... .++++| .||.++||-+.
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~-~~vat~~~~---~~rs~~~vta~-~dg~~KiW~~~ 487 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN-AFVATIFLN---PTRSVRCVTAS-VDGDFKIWVFT 487 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc-eeEEEEEec---CcccceeEEec-cCCeEEEEEEe
Confidence 98874 243 4889965433 22222 347776 666666662 3333 778877 99999999985
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+. .......|.|...=..|...+. .++|+.||.+|+ .+.|++|.+||..+
T Consensus 488 ~~~n--~~k~~s~W~c~~i~sy~k~~i~---------a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 488 DDSN--IYKKSSNWTCKAIGSYHKTPIT---------ALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred cccc--cCcCccceEEeeeeccccCccc---------chhhcCCCcEEE-EecCCEEEEecCCC
Confidence 4411 1122356777765544554443 489999997765 55688999999876
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-11 Score=131.81 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=138.4
Q ss_pred CEEEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKL--GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~D--G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
.|.-+.|+. .++|..+.+ ..+++++.+.+....-.-....|.+|.+ +.++|+.+-.+. |+|||+++.+.+
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklL-- 119 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLL-- 119 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEE---ccceEEEEEccc-EEEEecccceee--
Confidence 344455654 455555444 4588999887753332234557999999 567788887764 999999988732
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+.....+...+..+.++..+.++..-+. .+.+++||..... ++..+.
T Consensus 120 ---------hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------------------~v~~I~ 170 (391)
T KOG2110|consen 120 ---------HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------------------PVNTIN 170 (391)
T ss_pred ---------hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------------------eeeEEE
Confidence 233333233333333334444434443332 4567777664432 256778
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.|++.+-+++|+++| .+|||+|..|+ ||||.+.+|+.+..|+- -.-..|++++|+ +|+.+|.+++ ..++|+|
T Consensus 171 aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs----~ds~~L~~sS-~TeTVHi 244 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS----PDSQFLAASS-NTETVHI 244 (391)
T ss_pred ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC----CCCCeEEEec-CCCeEEE
Confidence 999999999999999 89999999998 89999999999999973 222368999999 9999998876 8999999
Q ss_pred EECCCC
Q 039790 452 WASAEE 457 (1395)
Q Consensus 452 WDl~tg 457 (1395)
|.+...
T Consensus 245 FKL~~~ 250 (391)
T KOG2110|consen 245 FKLEKV 250 (391)
T ss_pred EEeccc
Confidence 998764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-11 Score=141.66 Aligned_cols=239 Identities=12% Similarity=0.132 Sum_probs=150.9
Q ss_pred EEcCCeEEEEECCC-Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEECCC-CCCCCCCcccccceEEEE
Q 039790 234 GLKLGNIRILNIIT-AL---RSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNITE-GPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~-~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l 307 (1395)
...++.|++||+.+ +. +..+. +.+....++| ++++++|+.++ .++.|.+|++.. +. +..+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~-spd~~~lyv~~~~~~~i~~~~~~~~g~------------l~~~ 73 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVI-SPDKRHLYVGVRPEFRVLSYRIADDGA------------LTFA 73 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEE-CCCCCEEEEEECCCCcEEEEEECCCCc------------eEEe
Confidence 36789999999964 43 23333 4456778999 88999886654 588999999973 22 1111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
.... .......++|+|+++.++++.. ++.+..|+....+... .....+. +.....+++|+|
T Consensus 74 ~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~----------------~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV----------------APIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred eeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC----------------Cceeecc-CCCcccEeEeCC
Confidence 1111 1223457999999998888876 5556666653222100 0012222 233467889999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLA-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
++..++++...++.|.+||+.+...+. .+....+.....+.|+ |+|++|+++...+++|.+||+....
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~----pdg~~lyv~~~~~~~v~v~~~~~~~--- 208 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH----PNQQYAYCVNELNSSVDVWQLKDPH--- 208 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC----CCCCEEEEEecCCCEEEEEEEeCCC---
Confidence 984444666677999999997633221 1121222357889998 9999998877569999999997420
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
...+.++++......... ..+...+.++|+|++|+++. .++.|.+|+++.
T Consensus 209 -----~~~~~~~~~~~~p~~~~~---~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 209 -----GEIECVQTLDMMPADFSD---TRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -----CCEEEEEEEecCCCcCCC---CccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 112445555432211000 11223478899999888875 578999999965
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-13 Score=151.68 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=159.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
..|+.++.||.+.|.+-.......+..|.+.|.+-.| ++||.-|+++|+||.|+||.-. |-. -.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW-~~dGtgLlt~GEDG~iKiWSrs-GML--------------RS 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRW-SPDGAGLLTAGEDGVIKIWSRS-GML--------------RS 139 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhccc-CCCCceeeeecCCceEEEEecc-chH--------------HH
Confidence 5688889999999998877777788899999999999 9999999999999999999854 330 11
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+....+..|+|++|.|+...++.+..+...+.- .... ..+...+.|++-|.++.|++..
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp-L~~n--------------------~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQGGHISIKP-LAAN--------------------SKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEecCCeEEEee-cccc--------------------cceeEEeccCcEEEEeecCccc
Confidence 223446678999999999887776554433321 1111 1144556899999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+++++|+.|-..+||| ..|..+.+-..|+- +|++|+|. || ..++. | .-+++|+=..+.|
T Consensus 199 -~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey-~ITSva~n----pd-~~~~v-~-S~nt~R~~~p~~G----------- 257 (737)
T KOG1524|consen 199 -NIIASGGEDFRFKIWD-AQGANLFTSAAEEY-AITSVAFN----PE-KDYLL-W-SYNTARFSSPRVG----------- 257 (737)
T ss_pred -cceeecCCceeEEeec-ccCcccccCChhcc-ceeeeeec----cc-cceee-e-eeeeeeecCCCcc-----------
Confidence 8999999999999999 56788888888885 99999999 88 44443 4 3455553333222
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+ | .++||+||..+++|+..|.+.+-++
T Consensus 258 ------------Si-------f--nlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 258 ------------SI-------F--NLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ------------ce-------E--EEEEcCCCceeeccccCceEEEeee
Confidence 11 1 3899999999999999998766554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=154.37 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred CCCchhhHhhhccCCCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCccccccee
Q 039790 131 SSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPIT 210 (1395)
Q Consensus 131 ~~~g~~l~~ll~~~~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~ 210 (1395)
+++.+.+.+.|.............+++.+.+++||.||+||+|++.. +.|+..++ +...
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-----~~~~~~s~----------------rS~l 1092 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-----LEGEGGSA----------------RSEL 1092 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh-----hhcCccee----------------eeeE
Confidence 44555666666544444444455566669999999999999999542 21111111 1223
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------ceEEeccC-CCC-eEEEEEeeCCCC-EEEEEECC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--------LRSLLRGH-TQR-VTDMAFFAEDVH-LLASASVD 279 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H-~~~-V~slaf~s~dg~-~LaSgs~D 279 (1395)
+|.-....+.++....+++.+|+|++||.|++.+++.. +......+ .+. |...+|....+. .|+.+..-
T Consensus 1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec
Confidence 33334577888999999999999999999999998862 11111122 233 444455334444 78888899
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+.|..||++...... .++. .-..+.|++++.+|.+.+++.+...|.+..||.+......
T Consensus 1173 ~~iv~~D~r~~~~~w-----------~lk~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--------- 1231 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAW-----------RLKN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--------- 1231 (1431)
T ss_pred cceEEecchhhhhHH-----------hhhc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceee---------
Confidence 999999999765211 1111 1234678999999999977777777777777775432211
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceeEEecCCCCC--------------
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGH-------------- 421 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~-------------- 421 (1395)
..-..+...|+.+..+|--+ ...++++ ..+.|-+|++.+|.+-.++...++.
T Consensus 1232 ----------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~k 1301 (1431)
T KOG1240|consen 1232 ----------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARK 1301 (1431)
T ss_pred ----------cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCC
Confidence 11123456777777776543 4555554 4678999999999877776543210
Q ss_pred ----CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 422 ----PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 422 ----~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
.....++. .-+.+++++| .|..||.||....+.
T Consensus 1302 p~~~~~~~~~~~----~~~~~~ltgg-sd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1302 PDSLAGISCGVC----EKNGFLLTGG-SDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CCcccceeeecc----cCCceeeecC-CccceeeccCCCccc
Confidence 11122222 2234666766 899999999987644
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-12 Score=155.12 Aligned_cols=211 Identities=9% Similarity=0.102 Sum_probs=144.7
Q ss_pred CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 237 DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
+..|+|||.+......+..|...|.+.+| ++||++|+.++.+ ..|++||+.++.. ..+...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~w-SPDG~~la~~s~~~~~~~i~i~dl~tg~~------------~~l~~~--- 246 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAW-SPDGSKLAYVSFENKKSQLVVHDLRSGAR------------KVVASF--- 246 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceE-cCCCCEEEEEEecCCCcEEEEEeCCCCce------------EEEecC---
Confidence 57899999988777778889999999999 9999999988754 3699999987751 112112
Q ss_pred CCCccEEEEeCCCCeEEEEEe-CCeEE--EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 314 DSVHPRVCWHPHKQEILMLAI-GNRIL--KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~-~~~ii--~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......++|+|++..++++.. ++.+. .++... +. ...+..+...+.+.+|+||| .
T Consensus 247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-~~--------------------~~~lt~~~~~~~~~~wSpDG-~ 304 (429)
T PRK01742 247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG-GT--------------------PSQLTSGAGNNTEPSWSPDG-Q 304 (429)
T ss_pred CCccCceeECCCCCEEEEEEecCCcEEEEEEECCC-CC--------------------eEeeccCCCCcCCEEECCCC-C
Confidence 222346899999998887764 44333 233211 11 33445566778899999999 5
Q ss_pred EEE-EEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLA-SASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~La-Sgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+|+ ++..+|..+||++... .....+ .+.+ .++.|+ |||++|+.++ .++ +.+||+.++
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~S----pDG~~ia~~~-~~~-i~~~Dl~~g----------- 363 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQIS----ADGKTLVMIN-GDN-VVKQDLTSG----------- 363 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCC----CCCCEEEEEc-CCC-EEEEECCCC-----------
Confidence 555 5556788899986542 223333 4432 467898 9999998876 554 666999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.+........ . ....|+|||.+|+.++.++.+++|++.
T Consensus 364 -~~~~lt~~~~--~---------~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 364 -STEVLSSTFL--D---------ESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CeEEecCCCC--C---------CCceECCCCCEEEEEEcCCCceEEEEE
Confidence 4332211111 0 136799999999999999988888764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-12 Score=150.72 Aligned_cols=187 Identities=23% Similarity=0.314 Sum_probs=110.7
Q ss_pred CCeEEEEECCCCce--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC--CCCCCCCcccccceEEEEEEecC
Q 039790 237 LGNIRILNIITALR--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE--GPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 237 DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t--g~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
.+.|++-+.....+ ..++|..+.|-++.|.+-+...+. -.-|.++|||+.- |+. ...+ .+.....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i-------q~~l--~v~~~~p 178 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI-------QPQL--EVTPITP 178 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc-------ccce--EEeecCc
Confidence 46788888777643 577889999999999544443333 3447899999874 221 1111 2233333
Q ss_pred CCCCccEEEEeCCCC--eEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE------
Q 039790 313 GDSVHPRVCWHPHKQ--EILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS------ 383 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~--~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla------ 383 (1395)
....+..|.|+|.-. ..+.++ .++.+..+...+... ..+.+|..++++++
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---------------------~l~rsHs~~~~d~a~~~~g~ 237 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---------------------SLFRSHSQRVTDMAFFAEGV 237 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------------HHHHhcCCCcccHHHHhhch
Confidence 444556788877422 222222 234443332222111 22333554444443
Q ss_pred -----EecCCCcEEEEEeCCCcEEEEeCC-----CCceeEEecCCCCCCeeEEEEeecC-----CCCCcEEEEEecCCCe
Q 039790 384 -----MCQWLTTRLASASLDGTVKIWDDR-----KSTPLAVLRPYDGHPVNCVTFLIGP-----HPQHIVLITGGPLNRE 448 (1395)
Q Consensus 384 -----fspdg~~~LaSgs~Dg~IrIWDl~-----sg~~l~tl~~h~~~~V~sV~fs~~~-----~pdg~~L~s~Gs~Dg~ 448 (1395)
+|||| +.||.++.||.+++|.+. .-.|++.++.|++++-.|..|.-.. .+...+++++...+..
T Consensus 238 ~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre 316 (1283)
T KOG1916|consen 238 LKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNRE 316 (1283)
T ss_pred hhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcc
Confidence 58998 899999999999999764 3478889999986444444343000 0123467777777889
Q ss_pred EEEEECCC
Q 039790 449 LKIWASAE 456 (1395)
Q Consensus 449 I~IWDl~t 456 (1395)
+++|....
T Consensus 317 ~k~w~~a~ 324 (1283)
T KOG1916|consen 317 EKFWAEAP 324 (1283)
T ss_pred eeEeeccc
Confidence 99998744
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=151.61 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=176.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~~LasGs~ 236 (1395)
+.++++...-.|++|| | .+|+.|.|-+ .|. .-...|+.+.+-- |..++.+|+.
T Consensus 1077 p~i~~ad~r~~i~vwd-~-e~~~~l~~F~---------n~~--------------~~~t~Vs~l~liNe~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWD-W-EKGRLLNGFD---------NGA--------------FPDTRVSDLELINEQDDALLLTASS 1131 (1387)
T ss_pred ceeEEcCCcceEEEEe-c-ccCceecccc---------CCC--------------CCCCccceeeeecccchhheeeecc
Confidence 6677777667888888 3 3455552100 000 1123455554432 5578999999
Q ss_pred CCeEEEEECCC-C----c-eEEe---c----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 237 LGNIRILNIIT-A----L-RSLL---R----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 237 DG~IrIWd~~~-~----~-~~~l---~----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
||.||||+-.- + + +..+ . +-.+.=.-+.| .....+|+++|.-..|+|||.....+....+
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW-qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP------ 1204 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW-QQQSGHLLVTGDVRSIRIWDAHKEQVVADIP------ 1204 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccCccCCCCCeeeeh-hhhCCeEEecCCeeEEEEEecccceeEeecc------
Confidence 99999997432 1 1 1111 1 11222244667 4444455555557899999999766332222
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~s 381 (1395)
.+.+..++.+.-+..++.++++|..++.+++++.+..... ..+.....|.+. |..
T Consensus 1205 -------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------s~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1205 -------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------SLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred -------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc----------------ccceeecccCCccccee
Confidence 2244455555555555566666666555555554432211 225666778887 999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCC--CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYD--GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~--~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.+.+.|-..|++|+.||.|++||+|... ...++..|- |..++++... ++...+++|+ . +.|+||++...
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH----~hapiiAsGs-~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH----EHAPIIASGS-A-QLIKIYSLSGE 1335 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec----cCCCeeeecC-c-ceEEEEecChh
Confidence 99999875569999999999999999742 222333443 3248888886 7888877754 4 99999998653
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+..++.+.+-... ..+ -..+++|+|-..+|++|+.|++|.||....+
T Consensus 1336 -------------~l~~~k~n~~F~~q-~~g-s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 -------------QLNIIKYNPGFMGQ-RIG-SVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -------------hhcccccCcccccC-cCC-CcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 23333322211111 111 1247999999999999999999999987653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=146.81 Aligned_cols=315 Identities=16% Similarity=0.204 Sum_probs=211.1
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC--
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-- 326 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-- 326 (1395)
....|.+|.+.|..|.| ...|..|++|+.|..|.+||...+.. .+.+..+|...+....|-|..
T Consensus 134 l~~kL~~H~GcVntV~F-N~~Gd~l~SgSDD~~vv~WdW~~~~~-------------~l~f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHF-NQRGDVLASGSDDLQVVVWDWVSGSP-------------KLSFESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hhhcccCCCCccceeee-cccCceeeccCccceEEeehhhccCc-------------ccccccccccchhhhhccCCCCC
Confidence 34578899999999999 88999999999999999999998762 345566666666666666643
Q ss_pred CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 327 QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 327 ~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
..++.++.++.+..-.....+.. .....+..|.+.|..++.-|+.+.-|.+++.|+.++-+|+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~-----------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYV-----------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred cCceeccccCceeeeeeccccce-----------------ecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence 35666677777665544333221 2245667799999999999999999999999999999999
Q ss_pred CCCceeEEec--CCCCC---CeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 407 RKSTPLAVLR--PYDGH---PVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 407 ~sg~~l~tl~--~h~~~---~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+.+.+-..+. .++.. ..++++.. |... .++++| .|..+++||.+..... .....+..|..|.-
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~----P~nt~~faVgG-~dqf~RvYD~R~~~~e------~~n~~~~~f~p~hl 331 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVD----PRNTNEFAVGG-SDQFARVYDQRRIDKE------ENNGVLDKFCPHHL 331 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecC----CCCccccccCC-hhhhhhhhcccchhhc------cccchhhhcCCccc
Confidence 9886544432 22221 45677776 6666 455555 9999999999875210 11122344443332
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC----Ccceeeeee-eecccc-----EEEEecCCCCc
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA----STRMDYIAE-FTVTMP-----ILSLTGTTTDA 550 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~----~~~~~~i~~-f~~~~~-----ils~~~~~~d~ 550 (1395)
.. .....+.+++|+.+|.-|++.-.|-.||++.-+.+.... .++-.++.. |++|.. -+-|-|-....
T Consensus 332 ~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 332 VE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred cc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 21 223344579999888877788889999999655433211 222234444 666522 22333321133
Q ss_pred C--cCCCCeEEEEEcCCCceeee---cccceEEecCCCCC--eecccCCCceEEEeecCCCCccee
Q 039790 551 S--PDGEHIVQIYCVQTQAIQQY---ALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDGSAS 609 (1395)
Q Consensus 551 ~--~s~dg~V~lWdv~t~~i~~~---~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~ 609 (1395)
+ ++.-|.|.||+-.++++.++ --+.+.||-+.+.- ++.++-|..|+ ||---+.+....
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVK-IWTP~~~er~~~ 473 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVK-IWTPLTAERATE 473 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcccee-eecCCccccccC
Confidence 3 24569999999999988643 33478999999865 88888886665 996655554333
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=134.78 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=121.4
Q ss_pred CCCeEEEEEeeCCCC--EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 257 TQRVTDMAFFAEDVH--LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~--~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
.+.|.+..|-..++. +|+.|.++|.|.+||+.++.....++.- .....-...|...+.++.|.+....=+.+|.
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~----~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS----SKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc----cccccchhhccCcceeeeechhhcCCcCCCc
Confidence 345666665222232 5778899999999999997522222110 0112223457788888988876666677777
Q ss_pred CCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE
Q 039790 335 GNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA 413 (1395)
Q Consensus 335 ~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~ 413 (1395)
++.++.|..... +.. .+.....+ ..-.|..+.+-||+ +.|||+++|++||||..++..++.
T Consensus 226 ~dkl~~~Sl~~s~gsl---------------q~~~e~~l--knpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSL---------------QIRKEITL--KNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred cccceeeeeccccCcc---------------cccceEEe--cCCCccceEEccCC-cEEeecccCCcEEEEEeccCCchh
Confidence 788887765432 110 00001222 23357889999998 899999999999999999999999
Q ss_pred EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 414 VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 414 tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.++-|.+ .|.+|+|+ |+...+++++ .|++|.+|++
T Consensus 288 VLkyHsa-gvn~vAfs----pd~~lmAaas-kD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSA-GVNAVAFS----PDCELMAAAS-KDARISLWKL 322 (323)
T ss_pred hhhhhhc-ceeEEEeC----CCCchhhhcc-CCceEEeeec
Confidence 9999997 99999999 9988888866 9999999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=132.34 Aligned_cols=264 Identities=13% Similarity=0.105 Sum_probs=180.6
Q ss_pred ceeeeeCCCCCEEEEEEec---CCCEEEEEEc----CCeEEEEECC--CCceEEe--ccCCCCeEEEEEeeCCC-----C
Q 039790 208 PITKYISDPGLVLGRQIAV---NRNYICYGLK----LGNIRILNII--TALRSLL--RGHTQRVTDMAFFAEDV-----H 271 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Sp---dg~~LasGs~----DG~IrIWd~~--~~~~~~l--~~H~~~V~slaf~s~dg-----~ 271 (1395)
.+.+|..+ -.++++.|+. .+.+||.|+. ...|.|..++ +++.... ..|.-+++.+.| .|+. +
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~w-iPd~~g~~pd 114 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMW-IPDSKGVYPD 114 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEe-cCCccccCcc
Confidence 34445433 4567777874 3457888874 4667776554 3433222 479999999999 6654 4
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC-ccc
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG-KGE 350 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~-~~~ 350 (1395)
+|||++. .+|+|.+...... .....+........+...++++.|+.-...++.+++-++.+.+|+...+ .+.
T Consensus 115 lLATs~D--~LRlWri~~ee~~-----~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 115 LLATSSD--FLRLWRIGDEESR-----VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred hhhcccC--eEEEEeccCcCCc-----eehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 6777654 7999999853200 0011111112234456788899999888888877776666666654433 110
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCC-CCCeeEEEE
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYD-GHPVNCVTF 428 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~-~~~V~sV~f 428 (1395)
-...+..|++.|++++|...+...||+.+.||.||+||+|...--.. ++... ..+...++|
T Consensus 188 -----------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 188 -----------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred -----------------eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 02345579999999999998878999999999999999998643222 22222 237899999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEe
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANA 507 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs 507 (1395)
+ ..|-++|++-.-....|.|.|++.. ...+.++..|...+.. ++|.| .+..|++++
T Consensus 251 n---kqDpnymATf~~dS~~V~iLDiR~P-----------~tpva~L~~H~a~VNg---------IaWaPhS~~hictaG 307 (364)
T KOG0290|consen 251 N---KQDPNYMATFAMDSNKVVILDIRVP-----------CTPVARLRNHQASVNG---------IAWAPHSSSHICTAG 307 (364)
T ss_pred C---cCCchHHhhhhcCCceEEEEEecCC-----------CcceehhhcCcccccc---------eEecCCCCceeeecC
Confidence 8 2456678877756678999999875 3667889999887755 66655 567999999
Q ss_pred CCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYG 520 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g 520 (1395)
+|..+.|||+..-
T Consensus 308 DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 308 DDCQALIWDLQQM 320 (364)
T ss_pred CcceEEEEecccc
Confidence 9999999999863
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=133.22 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=159.8
Q ss_pred ceeeee-CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce--EEe-----ccCCCCeEEEEEee-CCCCEEEEEEC
Q 039790 208 PITKYI-SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR--SLL-----RGHTQRVTDMAFFA-EDVHLLASASV 278 (1395)
Q Consensus 208 ~i~~l~-~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l-----~~H~~~V~slaf~s-~dg~~LaSgs~ 278 (1395)
++..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..+.. ..+ .+|....++-+|++ .+++.+++.+
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence 333443 4557899999999999888765 78999999988632 222 23666788889954 4777777655
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|+++..||+++.++ ...+...|...+..+.|+|+.++++++|.+++-+++|+.+..+
T Consensus 192 d~tl~~~D~RT~~~-------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------- 248 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKK-------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------- 248 (370)
T ss_pred CCcEEEEEccchhh-------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----------
Confidence 78999999998762 2234455667788899999999999888877666666544322
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----------------------------
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----------------------------- 409 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----------------------------- 409 (1395)
.++..+.+|..+|+++.|+|....+|++|+.|..|.+|...+-
T Consensus 249 --------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 249 --------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred --------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 2367788999999999999998789999999999999964210
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+.++..|.+ .|++++|+ .-..+++++=|.||.+.|=.+..
T Consensus 321 g~l~tydehED-SVY~~aWS----sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 321 GQLETYDEHED-SVYALAWS----SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccc-ceEEEeec----cCCCeeEEEeccCceEEeecCCh
Confidence 13457788887 99999999 66778887777999998876643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-13 Score=158.45 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=164.7
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..+++|+.|..|++|+.. + ..++..+.||.+.|+.++.+.+..++++++.|
T Consensus 202 g~~Iitgsdd~lvKiwS~e--------------------t--------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 202 GRYIITGSDDRLVKIWSME--------------------T--------ARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred cceEeecCccceeeeeecc--------------------c--------hhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 4667777777777777722 1 24556778999999999999999999999999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc---ccc-cceEEEEEEecC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP---QIL-GKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~---~~~-~~~i~~l~~~~~ 312 (1395)
..|++|.+.++ .+..++||++.|++|+| +|-. +.+.||++++||.+-.. ....| .++ +..+..+.+...
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiaf-sP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAF-SPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeecc-Cccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeeeecccc
Confidence 99999999998 47899999999999999 6643 78899999999998211 00000 001 111111111100
Q ss_pred C-------------CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEcccCC
Q 039790 313 G-------------DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVGKHDG 377 (1395)
Q Consensus 313 ~-------------~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~~h~~ 377 (1395)
. ......++|.... .+++.+.++.- ..............|.+..+ .+.+.+|.+
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~-lif~t~ssd~~----------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRSNL-LIFVTRSSDLS----------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhccc-eEEEecccccc----------ccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0 0111122222221 12222221100 00000111112234555555 677889999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.++.+.|+|.++....+++.||...|||+-.|.+++.+. +|. .+....|| +||..++..- .-|.+.|.....
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~--kl~d~kFS----qdgts~~lsd-~hgql~i~g~gq 469 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG--KLVDGKFS----QDGTSIALSD-DHGQLYILGTGQ 469 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc--eeeccccC----CCCceEecCC-CCCceEEeccCC
Confidence 999999999998888899999999999999998887665 553 68899999 9999988744 668888876544
Q ss_pred C
Q 039790 457 E 457 (1395)
Q Consensus 457 g 457 (1395)
+
T Consensus 470 s 470 (1113)
T KOG0644|consen 470 S 470 (1113)
T ss_pred C
Confidence 3
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=127.81 Aligned_cols=321 Identities=16% Similarity=0.159 Sum_probs=194.5
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.-.+..++|++.-..+|++..|-.|||||-...+...++.- ...|++|+|.+-.+..|+.|+.. -|.||.....-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~- 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA- 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc-
Confidence 35677889998777789999999999999888665555543 35699999965566778888875 5899987643210
Q ss_pred CCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+ +.+....+.+++ ..+...|+++.|.+++..++.++.++.-+++|+...+... ....
T Consensus 176 ~r~-~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-------------------pL~~ 235 (445)
T KOG2139|consen 176 NRN-IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-------------------PLIP 235 (445)
T ss_pred ccc-cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-------------------cccc
Confidence 000 000011122222 2234789999999999988888888887777776655431 1112
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDD-RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl-~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.+.-+.||||| .+|..++-|+..++|+. ++..+.+-.-+. + .|...+|+ |+|++|+.+.+ |.=+||
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgs-g-rvqtacWs----pcGsfLLf~~s--gsp~ly 306 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGS-G-RVQTACWS----PCGSFLLFACS--GSPRLY 306 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccC-C-ceeeeeec----CCCCEEEEEEc--CCceEE
Confidence 244678899999999 79999999999999954 445544444443 4 89999999 99999888764 455566
Q ss_pred ECCCCCC--CCC-CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe--------EEEEEcCCCC
Q 039790 453 ASAEEEG--WLL-PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA--------IYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~--~~~-~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~--------I~iWdl~~g~ 521 (1395)
.+.-.+. ... +.+.+.-..+..+............+--.+.++|.|.|.+|++.-+.+. |.+||.....
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 5543311 111 1111111122222111100000001112347999999999998765443 4555543311
Q ss_pred CCCCcceeeeeeeeccccE-EEEecCCCCcCcCCCCeEEEEEcCCCceeeecccce
Q 039790 522 NPASTRMDYIAEFTVTMPI-LSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLS 576 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~~~i-ls~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~ 576 (1395)
. -.+.+.....+..|. ++|... ..++.+..-+-.||.++.|-+.+.
T Consensus 387 ~---vels~cg~i~ge~P~~IsF~pl------~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 387 P---VELSYCGMIGGEYPAYISFGPL------KNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred c---eEEEecccccCCCCceEEeeec------ccCCcEEEEEeccCceEeeeeEEE
Confidence 0 011111222222232 344444 246667777777898888876655
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=143.27 Aligned_cols=201 Identities=19% Similarity=0.188 Sum_probs=146.3
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
.+++|+.+|..|++|+.||++|||++..- .+..+..|...|.+|.| ++||.+|++-+.| ..+||+..+|.++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~F-S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDF-SPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCcccccee-CCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 78899999999999999999999996654 56677889999999999 9999999999999 999999999863322210
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCC---Ce-EEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHK---QE-ILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~---~~-lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...+.....|.|..++ .. +++... .+.+..++...- +... .-..+...
T Consensus 226 ------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w------~~~~---------~l~~~~~~ 278 (398)
T KOG0771|consen 226 ------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW------SGSN---------FLRLRKKI 278 (398)
T ss_pred ------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee------cccc---------ccchhhhh
Confidence 1122233356665554 22 222222 344444433211 1100 00011112
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.....|.+++.+.+| +++|.|+.||.|-|++..+-++++..+ .|.+ .|+.|.|+ ||.+++++.. .|.++.|.
T Consensus 279 ~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~-~VT~ltF~----Pdsr~~~svS-s~~~~~v~ 351 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG-FVTGLTFS----PDSRYLASVS-SDNEAAVT 351 (398)
T ss_pred hccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhhhee-eeeeEEEc----CCcCcccccc-cCCceeEE
Confidence 234579999999999 899999999999999999988887665 7877 99999999 9999999965 88888888
Q ss_pred ECCC
Q 039790 453 ASAE 456 (1395)
Q Consensus 453 Dl~t 456 (1395)
.+.-
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7754
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=149.25 Aligned_cols=250 Identities=12% Similarity=0.045 Sum_probs=174.4
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE--EE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY--IC 232 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~--La 232 (1395)
|+++..|+.|..+|.|.+||+.....+... ..-.....|...|+.+.|-.+..- ++
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s----------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPS----------------------GLSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCc----------------------ccccccccCCcCeEEEEEeccCCCCceE
Confidence 445578888888889989885432211110 011223468899999999876544 99
Q ss_pred EEEcCCeEEEEECCCC----ceEEe--c-------cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 233 YGLKLGNIRILNIITA----LRSLL--R-------GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~----~~~~l--~-------~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
+++.||.|+.|+++.- ....+ . .-...+++++|...+...|+.|+.+|.|+--+-.......
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~----- 384 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP----- 384 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc-----
Confidence 9999999999987652 01111 1 1234689999977788899999999998874333222000
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
............|.+.|+.+.++|-+..+|.++.+.++.+|...... .++..+..+.+.|
T Consensus 385 -~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-------------------~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 385 -EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-------------------SPLLSLDSSPDYV 444 (555)
T ss_pred -cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-------------------Ccchhhhhcccee
Confidence 01111233455678899999999999988888887777666543111 1133445577789
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++++|||-.+..|+++..||.|.|||+... .++.+.+-+.. ..+.+.|+ +.|+.|++| ...|+|++|++...
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s----~~g~~lavG-d~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWS----PNGKLLAVG-DANGTTHILKLSES 518 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecC----CCCcEEEEe-cCCCcEEEEEcCch
Confidence 999999998889999999999999998764 56666665543 77888887 779888885 49999999999643
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=145.68 Aligned_cols=229 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
-+.+.++.+|++|+.|+..|.|-.+|+.++.++.-..-...|.++.| -.+..+||.+- ...++|||-. |.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~-LHneq~~AVAQ-K~y~yvYD~~-Gt------- 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTF-LHNEQFFAVAQ-KKYVYVYDNN-GT------- 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhh-hcchHHHHhhh-hceEEEecCC-Cc-------
Confidence 35678999999999999999999999999876655555678999999 56666776664 4689999965 33
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
-+.|++. ...+..+.|-|.. +++++++..+...|-+...|.. +..+....+.
T Consensus 202 ----ElHClk~----~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl-------------------Va~~~t~~G~ 253 (545)
T KOG1272|consen 202 ----ELHCLKR----HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL-------------------VASIRTGAGR 253 (545)
T ss_pred ----EEeehhh----cCchhhhcccchh-heeeecccCCceEEEeechhhh-------------------hHHHHccCCc
Confidence 2334322 2346678888876 6777777777777766665543 2233345567
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+..++-+|.+ -.+-+|...|+|.+|......++..+-.|.+ +|.+|++. ++|+|++|+| .|+.|+|||++..
T Consensus 254 ~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~----~~G~YMaTtG-~Dr~~kIWDlR~~- 325 (545)
T KOG1272|consen 254 TDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVD----RGGRYMATTG-LDRKVKIWDLRNF- 325 (545)
T ss_pred cchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEEC----CCCcEEeecc-cccceeEeeeccc-
Confidence 7888889987 6899999999999999999999999999998 99999998 9999999999 9999999999987
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..+.++.... ....+++|..|.+. .+....|.||.
T Consensus 326 -----------~ql~t~~tp~----------~a~~ls~SqkglLA--~~~G~~v~iw~ 360 (545)
T KOG1272|consen 326 -----------YQLHTYRTPH----------PASNLSLSQKGLLA--LSYGDHVQIWK 360 (545)
T ss_pred -----------cccceeecCC----------Ccccccccccccee--eecCCeeeeeh
Confidence 4444444311 11247787766543 44456789995
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-10 Score=131.68 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=132.5
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEec-----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRSLLR-----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~~l~-----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.+--|..|-..|.|.++|........+. -....|+++.|-+-+...|+.+-.+|.+++||..-.-. .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-~------ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-A------ 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-C------
Confidence 46677888888899999887664322211 12368999999777778888999999999999742110 0
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
...+....+++..+ +... +...... .++....--.+.|+
T Consensus 256 ---------------t~p~~~~~k~~~~f-~i~t------~ksk~~r-------------------NPv~~w~~~~g~in 294 (636)
T KOG2394|consen 256 ---------------TAPSYQALKDGDQF-AILT------SKSKKTR-------------------NPVARWHIGEGSIN 294 (636)
T ss_pred ---------------CCCcccccCCCCee-EEee------eeccccC-------------------CccceeEecccccc
Confidence 00011111222211 1111 0000000 01111112345899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
.++|++|| .+||+.+.||.+||||..+.+++..++.+-+ ...||+|| |||+||+++| .|.-|.||.+...
T Consensus 295 ~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWS----PDGKyIvtGG-EDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 295 EFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCWS----PDGKYIVTGG-EDDLVTVWSFEER--- 364 (636)
T ss_pred ceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEEc----CCccEEEecC-CcceEEEEEeccc---
Confidence 99999998 8999999999999999999998888888877 89999999 9999999988 9999999999877
Q ss_pred CCCCCcccccEEEEEeccCccccc
Q 039790 461 LLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+.+..=.+|.+++..
T Consensus 365 ---------RVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 365 ---------RVVARGQGHKSWVSV 379 (636)
T ss_pred ---------eEEEeccccccceee
Confidence 777766777665543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-10 Score=138.23 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=137.3
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEE-ECCC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA-SVDG 280 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSg-s~Dg 280 (1395)
.+...+.+..+...+.+.+|+|||+.|++.+. +..|++||+.++....+....+.+..++| ++||+.|+.. +.+|
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~-SPDG~~La~~~~~~g 265 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF-SPDGSKLAFALSKTG 265 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEE-CCCCCEEEEEEcCCC
Confidence 34444555566678899999999999998653 45799999998876655555555667899 9999988765 4455
Q ss_pred --cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCC
Q 039790 281 --RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 281 --tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~ 355 (1395)
.|++||+.++. ..++ ..+...+....|+|++..++.++..+ .++.++... +.
T Consensus 266 ~~~I~~~d~~tg~--------------~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g~------- 322 (429)
T PRK03629 266 SLNLYVMDLASGQ--------------IRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-GA------- 322 (429)
T ss_pred CcEEEEEECCCCC--------------EEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-CC-------
Confidence 49999998776 1122 22334567899999999887776543 333333321 11
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+...+.+..|+||| ++|+..+.+ ..|.+||+.++... .+... . ......|+
T Consensus 323 -------------~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~S--- 382 (429)
T PRK03629 323 -------------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIA--- 382 (429)
T ss_pred -------------eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceEC---
Confidence 22222344456678999999 666665543 35889999888643 44322 1 34578899
Q ss_pred CCCCcEEEEEecCCCe---EEEEECC
Q 039790 433 HPQHIVLITGGPLNRE---LKIWASA 455 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~---I~IWDl~ 455 (1395)
|||++|+.++ .++. +.+|++.
T Consensus 383 -pDG~~i~~~s-~~~~~~~l~~~~~~ 406 (429)
T PRK03629 383 -PNGTMVIYSS-SQGMGSVLNLVSTD 406 (429)
T ss_pred -CCCCEEEEEE-cCCCceEEEEEECC
Confidence 9999999877 5553 6777774
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=126.24 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=131.7
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
-+....|.+.|.|-.|++||.-|++++.||.|+||....-.+.++......|+|++| .++.+-++-|-. +.+.|=-+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W-~p~S~~vl~c~g-~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW-APNSNSIVFCQG-GHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE-CCCCCceEEecC-CeEEEeecc
Confidence 345567999999999999999999999999999999766566667777789999999 666665555543 355555554
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
... .+--...|++.+.++.|++..+.++.+|.+-+..+||. .. ..
T Consensus 175 ~n~--------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G-~~------------------- 219 (737)
T KOG1524|consen 175 ANS--------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QG-AN------------------- 219 (737)
T ss_pred ccc--------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cC-cc-------------------
Confidence 432 22334578899999999999875555555555555543 21 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
+..-..|..+|++++|.|+ ..++.+|.. ++| |. ...| .|..++|| +||..++.++ ..|
T Consensus 220 Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R------------~~~p~~G-SifnlsWS----~DGTQ~a~gt-~~G 278 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR------------FSSPRVG-SIFNLSWS----ADGTQATCGT-STG 278 (737)
T ss_pred cccCChhccceeeeeeccc--cceeeeeee-eee------------ecCCCcc-ceEEEEEc----CCCceeeccc-cCc
Confidence 2333469999999999998 466666643 333 33 2334 89999999 9999888765 677
Q ss_pred eEEE
Q 039790 448 ELKI 451 (1395)
Q Consensus 448 ~I~I 451 (1395)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 6654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-09 Score=130.63 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=141.0
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||.+......+..+...+.+.+| ++||+.|+..+. +..|++||+.+++.. .+ ....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~w-SPDG~~la~~s~~~g~~~i~i~dl~~G~~~------------~l---~~~~ 242 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAW-SPDGSKLAYVTFESGRSALVIQTLANGAVR------------QV---ASFP 242 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEE-cCCCCEEEEEEecCCCcEEEEEECCCCCeE------------Ec---cCCC
Confidence 3799999988766666677788999999 999999887643 457999999887510 11 1122
Q ss_pred CCccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.......|+|+|..++.+... + .+++|+... +. ...+..+...+....|+||| +.
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~--------------------~~~lt~~~~~~~~~~wSPDG-~~ 300 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ--------------------IRQVTDGRSNNTEPTWFPDS-QN 300 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC--------------------EEEccCCCCCcCceEECCCC-CE
Confidence 234468999999988876542 2 355555422 11 23333344567889999999 66
Q ss_pred EEEEeC-CCcEEEE--eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCCCCCCc
Q 039790 392 LASASL-DGTVKIW--DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs~-Dg~IrIW--Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+..+. ++..+|| |+.++.. ..+..+.. .+.+..|+ |||++|+.++..+ ..|.+||+.++
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~-~~~~~~~S----pDG~~Ia~~~~~~g~~~I~~~dl~~g--------- 365 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVS----SDGKFMVMVSSNGGQQHIAKQDLATG--------- 365 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCe-EEeecCCC-CccCEEEC----CCCCEEEEEEccCCCceEEEEECCCC---------
Confidence 666554 4554555 6666654 34443433 56789999 9999998876343 35888998776
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe---EEEEEcC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA---IYAIHMD 518 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~---I~iWdl~ 518 (1395)
.. ..+.... . .....|++||.+|+..+.++. +++|+++
T Consensus 366 ---~~-~~Lt~~~-~---------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 366 ---GV-QVLTDTF-L---------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ---Ce-EEeCCCC-C---------CCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 32 2222111 0 113678999999999887764 6777764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=133.92 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=141.7
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.|||..++....+..|...+.+.+| ++||+.|+.++.+ ..|++||+.++.. . .+....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~w-SpDg~~la~~s~~~~~~~l~~~dl~~g~~--------------~-~l~~~~ 247 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAW-SPDGKKLAYVSFERGRSAIYVQDLATGQR--------------E-LVASFR 247 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccC-CCCCCEEEEEecCCCCcEEEEEECCCCCE--------------E-EeccCC
Confidence 4699999987777777778889999999 8999999988743 4699999988761 1 111223
Q ss_pred CCccEEEEeCCCCeEEEEEe-CC--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAI-GN--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~-~~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.......|+|++..++.+.. ++ .+++|+... +. ...+..+......++|+||| ++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~--------------------~~~lt~~~~~~~~~~~spDG-~~ 305 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ--------------------LTRLTNHFGIDTEPTWAPDG-KS 305 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC--------------------eEECccCCCCccceEECCCC-CE
Confidence 33457899999998876544 33 366665432 11 23334455556788999998 66
Q ss_pred EEEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCc
Q 039790 392 LASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+.++ .+|. |.+||+.++... .+..+.. ....++|+ |||++|+.+...++ .|.+||+.++
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~-~~~~~~~S----pDG~~Ia~~~~~~~~~~I~v~d~~~g--------- 370 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN-YNARASVS----PDGKKIAMVHGSGGQYRIAVMDLSTG--------- 370 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeE-EeecCCC-CccCEEEC----CCCCEEEEEECCCCceeEEEEECCCC---------
Confidence 66555 4555 666677776543 3322333 45678999 99999987653333 6999999776
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~ 519 (1395)
... .+. +... .....|++||++|+..+.+ +.|++|++..
T Consensus 371 ---~~~-~Lt-~~~~---------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 371 ---SVR-TLT-PGSL---------DESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ---CeE-ECC-CCCC---------CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 332 222 1111 1136899999988777653 4578887743
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-10 Score=135.99 Aligned_cols=207 Identities=13% Similarity=0.147 Sum_probs=139.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDG 280 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dg 280 (1395)
.+...+.+..+...+.+..|+|||++|++++.+ ..|++||+.++....+..+.+...+++| ++||+.|+ +.+.+|
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~-SpDG~~l~~~~s~~g 270 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSF-SPDGRRLALTLSRDG 270 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceE-CCCCCEEEEEEeCCC
Confidence 344455666777789999999999999998743 4699999999877666666666778899 89998765 556666
Q ss_pred --cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCC
Q 039790 281 --RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 281 --tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~ 355 (1395)
.|++||+.++.. ..+..+.......+|+|++..++.++..+ .++.++... +.
T Consensus 271 ~~~Iy~~d~~~g~~---------------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~------- 327 (433)
T PRK04922 271 NPEIYVMDLGSRQL---------------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS------- 327 (433)
T ss_pred CceEEEEECCCCCe---------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-------
Confidence 599999988761 11222333445789999999887776432 244444321 11
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+......++|+||| ++|+..+.++ .|.+||+.++... .+. +.. ......|+
T Consensus 328 -------------~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~-~~~~p~~s--- 387 (433)
T PRK04922 328 -------------AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGS-LDESPSFA--- 387 (433)
T ss_pred -------------eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCC-CCCCceEC---
Confidence 12222233445578999999 6766654433 5999999888754 443 322 45678999
Q ss_pred CCCCcEEEEEecCC--CeEEEEECCC
Q 039790 433 HPQHIVLITGGPLN--RELKIWASAE 456 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~D--g~I~IWDl~t 456 (1395)
|||++|+.+.... +.|.+|++..
T Consensus 388 -pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 388 -PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CCCCEEEEEEecCCceEEEEEECCC
Confidence 9999888765332 3577777743
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=132.24 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=144.6
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||.+++....+..|...|.+.+| ++||+.|+..+. +..|++||+.++.. ..+....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~w-SpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------~~l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRF-SPNRQEITYMSYANGRPRVYLLDLETGQR---------------ELVGNFP 245 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEE-CCCCCEEEEEEecCCCCEEEEEECCCCcE---------------EEeecCC
Confidence 4799999988777778889999999999 899999888764 46899999988761 1222334
Q ss_pred CCccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
..+....|+|+|..++.+... + .|++++... +. ...+..+.......+|+||| ++
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~--------------------~~~Lt~~~~~~~~~~~spDG-~~ 303 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GT--------------------TTRLTDSPAIDTSPSYSPDG-SQ 303 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCC-Cc--------------------eEEccCCCCccCceeEcCCC-CE
Confidence 455678999999988766543 2 355555422 11 23344455667789999999 66
Q ss_pred EEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCCCCCCc
Q 039790 392 LASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+..+. +| .|.+||+..+... .+..+.+ .+....|+ |||++|+.+.... ..|.+||+..+
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~S----pdG~~ia~~~~~~~~~~i~~~d~~~~--------- 368 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWS----PRGDLIAFTKQGGGQFSIGVMKPDGS--------- 368 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEEC----CCCCEEEEEEcCCCceEEEEEECCCC---------
Confidence 666553 33 5888898766543 3433344 57788999 9999998765222 36788887544
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK------NAIYAIHMDYG 520 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D------g~I~iWdl~~g 520 (1395)
..+.+.. ... .....|++||++|+..+.+ ..|+++++..+
T Consensus 369 ----~~~~lt~-~~~---------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 369 ----GERILTS-GFL---------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ----ceEeccC-CCC---------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 1222221 111 1247899999988775542 35777777543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-09 Score=113.61 Aligned_cols=178 Identities=17% Similarity=0.309 Sum_probs=122.7
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
..|.|||-... ++..+ ....+|.+|.+ ..+.|+..- .+.|+||...+.. +.+..+.+.....+
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l---~r~riVvvl-~~~I~VytF~~n~----------k~l~~~et~~NPkG- 138 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKL---RRDRIVVVL-ENKIYVYTFPDNP----------KLLHVIETRSNPKG- 138 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEE---cCCeEEEEe-cCeEEEEEcCCCh----------hheeeeecccCCCc-
Confidence 47999994444 33333 35678999999 345666655 4689999998543 12233333332222
Q ss_pred ccEEEEeCCCC-eEEE-EEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 317 HPRVCWHPHKQ-EILM-LAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 317 v~~v~~sp~~~-~lla-~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
-++.+|... .+++ -|. .|.+.+.+......+ ....+..|...|.|++.+.+| .++|
T Consensus 139 --lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------------------~p~~I~AH~s~Iacv~Ln~~G-t~vA 197 (346)
T KOG2111|consen 139 --LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------------------APSIINAHDSDIACVALNLQG-TLVA 197 (346)
T ss_pred --eEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------------------CceEEEcccCceeEEEEcCCc-cEEE
Confidence 233334332 2222 222 345555555432211 246678899999999999999 8999
Q ss_pred EEeCCCc-EEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 394 SASLDGT-VKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 394 Sgs~Dg~-IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|..|+ |||||..+|..+..++ |-....|++++|| |+..+|++++ +-|+|+||.++..
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS----p~~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS----PNSSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC----CCccEEEEEc-CCCeEEEEEeecC
Confidence 9999998 8999999999999987 4333479999999 9999999865 8999999999764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-08 Score=116.51 Aligned_cols=262 Identities=12% Similarity=0.100 Sum_probs=148.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~I 284 (1395)
+.+.++......-..+.|++||+++++++.||.|.+||+.+++ +..+.. ...-.++++ ++||+++++++ .++.|.|
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~-s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAV-SPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE---TTTEEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEE-cCCCCEEEEEecCCCceeE
Confidence 4455555443333456799999999999999999999999985 445543 345678999 89999888665 6899999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|..+.+ .+..+..... ....+..+..++.+..+++.-. .+.+..++.......
T Consensus 105 ~D~~tle-----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~---------- 163 (369)
T PF02239_consen 105 IDAETLE-----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL---------- 163 (369)
T ss_dssp EETTT-------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE----------
T ss_pred ecccccc-----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc----------
Confidence 9999876 2222222111 2234445666777775555544 477777775443110
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~pd 435 (1395)
............+..|+|++..+++....+..|-++|..+++.+..+.. |.+ ++..+- ||.
T Consensus 164 ---------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~-~~~~~p-----hp~ 228 (369)
T PF02239_consen 164 ---------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG-PGANFP-----HPG 228 (369)
T ss_dssp ---------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET-TEEEEE-----ETT
T ss_pred ---------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc-cccccc-----CCC
Confidence 1122234557788999999843445556678999999999987776542 322 222221 233
Q ss_pred C-cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE----eCCC
Q 039790 436 H-IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN----AKKN 510 (1395)
Q Consensus 436 g-~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg----s~Dg 510 (1395)
. ....+.+..+..+-+...... ...+...|+.++++...+... .+..+|++.+|... ...+
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v----~v~d~~~wkvv~~I~~~G~gl----------Fi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPV----SVHDDYAWKVVKTIPTQGGGL----------FIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TT----T-STTTBTSEEEEEE-SSSS------------EE--TT-SEEEEE-TT-SSHT
T ss_pred cceEEeeccccceecccccCCcc----ccchhhcCeEEEEEECCCCcc----------eeecCCCCccEEeeccCCCCCc
Confidence 2 222232222222222222111 112335679999999876542 26779999999988 4568
Q ss_pred eEEEEEcCCC
Q 039790 511 AIYAIHMDYG 520 (1395)
Q Consensus 511 ~I~iWdl~~g 520 (1395)
.|.++|..+.
T Consensus 295 ~v~viD~~tl 304 (369)
T PF02239_consen 295 TVQVIDKKTL 304 (369)
T ss_dssp -EEEEECCGT
T ss_pred eEEEEECcCc
Confidence 8999998763
|
... |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-09 Score=117.41 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=164.8
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPD 292 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~ 292 (1395)
...+..+.|..+...|..|+.|| .++|+...-.. .........|.-+-| ...++|..+.+. .+++++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF---SSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF---SSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec---ccceeEEEecCCCceEEEEEcccCce
Confidence 34566677999999999999998 46787765322 111122234666667 345665555543 488999887651
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
+ |-.++ ...+.+|.++. ..++++-.+.|+++|.....- ..-+...
T Consensus 81 I------------Ce~~f---pt~IL~VrmNr---~RLvV~Lee~IyIydI~~Mkl-----------------LhTI~t~ 125 (391)
T KOG2110|consen 81 I------------CEIFF---PTSILAVRMNR---KRLVVCLEESIYIYDIKDMKL-----------------LHTIETT 125 (391)
T ss_pred E------------EEEec---CCceEEEEEcc---ceEEEEEcccEEEEeccccee-----------------ehhhhcc
Confidence 1 11111 22344555543 234555556688888865321 1112233
Q ss_pred cccCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe-E
Q 039790 373 GKHDGEITELSMCQWLTTRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE-L 449 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~-I 449 (1395)
..+...+.+++++..+ .+||--+ ..|.|.|||+.+-+++.++..|++ .+-+++|+ ++|.+|++++ ..|+ |
T Consensus 126 ~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs----~~G~llATAS-eKGTVI 198 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFS----PDGTLLATAS-EKGTVI 198 (391)
T ss_pred CCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEEC----CCCCEEEEec-cCceEE
Confidence 3455667777777766 5776533 358899999999999999999998 99999999 9999999976 6776 5
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|||++.+| ..+..|+-... +.-...++|++|+.+|++.+..++|.||.++.-.
T Consensus 199 RVf~v~~G------------~kl~eFRRG~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEG------------QKLYEFRRGTY-------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCc------------cEeeeeeCCce-------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999988 77776653222 1223479999999999999999999999998744
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-09 Score=132.59 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=144.4
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~D 279 (1395)
..+...+.+..|...+.+..|+|||+.|++.+. +..|++||+.++....+..+.+.+.+.+| ++||+.|+ +.+.+
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~ 267 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF-SPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE-CCCCCEEEEEEecC
Confidence 345555667788889999999999999999864 46899999999987777778888889999 89998765 55666
Q ss_pred Cc--EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccC
Q 039790 280 GR--FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 280 gt--V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~ 354 (1395)
|. |++||+.++.. ..+..+........|+|++..++.++..+ .+++++... +.
T Consensus 268 g~~~Iy~~d~~~~~~---------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~------ 325 (435)
T PRK05137 268 GNTDIYTMDLRSGTT---------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN------ 325 (435)
T ss_pred CCceEEEEECCCCce---------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC------
Confidence 65 77889887651 12233344556789999999887766432 355555321 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
...+..+.+.+....|+||| ++|+..+.+ ..|.+||+..+. .+.+.. .. .+..+.|+
T Consensus 326 --------------~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~-~~~~p~~s-- 385 (435)
T PRK05137 326 --------------PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GF-LVEGPTWA-- 385 (435)
T ss_pred --------------eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCc-eEeccC-CC-CCCCCeEC--
Confidence 22232234556778999999 677665543 358888975553 344432 22 57789999
Q ss_pred CCCCCcEEEEEecCC-----CeEEEEECCCC
Q 039790 432 PHPQHIVLITGGPLN-----RELKIWASAEE 457 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~D-----g~I~IWDl~tg 457 (1395)
|||++|+..+... ..|.++|+..+
T Consensus 386 --pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 386 --PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred --CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9999988765333 25777777554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=133.23 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=133.7
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCc
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGR 281 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dgt 281 (1395)
+.....+..+...+.+.+|+|||+.|++.+.+ ..|.+||+.++....+....+.+.+.+| ++||+.|+ +.+.+|.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAW-SPDGRTLAVALSRDGN 263 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEEccCCC
Confidence 33444555677889999999999999988753 4599999999876666656667788999 89998876 5677887
Q ss_pred EEEEECC--CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-Ce--EEEEEcCCCCccccccCCC
Q 039790 282 FFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NR--ILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 282 V~IWdl~--tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~--ii~~d~~~~~~~~~~s~~~ 356 (1395)
..||.+. .+. +..+..+........|+|++..++.++.. +. ++.++... +.
T Consensus 264 ~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-g~-------- 319 (427)
T PRK02889 264 SQIYTVNADGSG---------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-GA-------- 319 (427)
T ss_pred ceEEEEECCCCC---------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-Cc--------
Confidence 6666553 332 11222333445568899999988776643 23 33332211 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+..+.......+|+||| ++|+..+.++ .|.+||+.++... .+..+ . ....+.|+
T Consensus 320 ------------~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~-~~~~p~~s---- 379 (427)
T PRK02889 320 ------------AQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-T-RDESPSFA---- 379 (427)
T ss_pred ------------eEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-EccCC-C-CccCceEC----
Confidence 11111122334568899999 7777766554 6999999888754 33322 2 45788999
Q ss_pred CCCcEEEEEecCCCe--EEEEEC
Q 039790 434 PQHIVLITGGPLNRE--LKIWAS 454 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~--I~IWDl 454 (1395)
|||++|+.++...|. +.+.++
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEEC
Confidence 999999887744443 344444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=132.45 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=134.5
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||........+..+...+.+.+| ++||+.|+..+.+ ..|++||+.++. ...+ ....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~~~~~I~~~dl~~g~--------------~~~l-~~~~ 239 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFESKKPVVYVHDLATGR--------------RRVV-ANFK 239 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccCCCcEEEEEECCCCC--------------EEEe-ecCC
Confidence 4677888866666667778889999999 8999999887753 359999999876 1111 1222
Q ss_pred CCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
.......|+|++..++.+.. ++...+|.....+. ....+..+.+.+....|+||| ++|+
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-------------------~~~~lt~~~~~~~~~~wSpDG-~~l~ 299 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-------------------GLRRLTQSSGIDTEPFFSPDG-RSIY 299 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCC-------------------CcEECCCCCCCCcCeEEcCCC-CEEE
Confidence 34457899999998876544 44333322211110 023344455556778999999 5655
Q ss_pred EEe-CCCcEEEEeC--CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCccc
Q 039790 394 SAS-LDGTVKIWDD--RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 394 Sgs-~Dg~IrIWDl--~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
..+ .+|...||.+ .++.. ..+..+.. ......|+ |||++|+.++..++ .|.+||+.++
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~-~~~~~~~S----pDG~~Ia~~s~~~g~~~I~v~d~~~g----------- 362 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGS-YNTSPRIS----PDGKLLAYISRVGGAFKLYVQDLATG----------- 362 (427)
T ss_pred EEecCCCCcEEEEEECCCCce-EEEecCCC-CcCceEEC----CCCCEEEEEEccCCcEEEEEEECCCC-----------
Confidence 444 4567777754 44443 22222222 45578999 99999987662322 6999999876
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl 517 (1395)
... .+.... . .....|++||++|+..+.++ .+++.++
T Consensus 363 -~~~-~lt~~~-~---------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 363 -QVT-ALTDTT-R---------DESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -CeE-EccCCC-C---------ccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 322 222111 1 12378999999988877544 2455454
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-09 Score=124.26 Aligned_cols=251 Identities=13% Similarity=0.156 Sum_probs=168.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYI-CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~L-asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..|..|. +....+.+.+++||+|+ |+|.+.-.|++||+..-.+..-++-...|..+...+.|-..++--..|.+|-+.
T Consensus 43 eLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 3444443 67788899999999985 677888999999998654443333344555555445565556666677777665
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
.--... ..++ -......++++.-...++++|.+..+++++.....-
T Consensus 122 ak~G~h-------------y~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----------------- 167 (703)
T KOG2321|consen 122 AKYGRH-------------YRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----------------- 167 (703)
T ss_pred hhcCee-------------eeee----cCcCCccccccCCCccEEEeecCcceEEEEcccccc-----------------
Confidence 433111 0111 112234577887778899999999999998744211
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------CCC----CCeeEEEEeecCCCC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------YDG----HPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------h~~----~~V~sV~fs~~~~pd 435 (1395)
+.-+....+.+++|..++.+ .+|++|+.||.|.+||.|....+.++.. |.+ ..|+++.|+ -+
T Consensus 168 ---L~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~----d~ 239 (703)
T KOG2321|consen 168 ---LNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR----DD 239 (703)
T ss_pred ---ccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec----CC
Confidence 23344455789999999988 7999999999999999998877766652 222 149999998 66
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC--CCEEEEEeCCCeEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA--GLFLLANAKKNAIY 513 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~ 513 (1395)
|-.+++| ..+|.|.|||+++. +.+. .+.|..... ...+.|-+. +..|++. +...++
T Consensus 240 gL~~aVG-ts~G~v~iyDLRa~------------~pl~-~kdh~~e~p-------i~~l~~~~~~~q~~v~S~-Dk~~~k 297 (703)
T KOG2321|consen 240 GLHVAVG-TSTGSVLIYDLRAS------------KPLL-VKDHGYELP-------IKKLDWQDTDQQNKVVSM-DKRILK 297 (703)
T ss_pred ceeEEee-ccCCcEEEEEcccC------------Ccee-ecccCCccc-------eeeecccccCCCceEEec-chHHhh
Confidence 8778775 59999999999987 4333 233332211 112444332 4455544 456799
Q ss_pred EEEcCCCCC
Q 039790 514 AIHMDYGPN 522 (1395)
Q Consensus 514 iWdl~~g~~ 522 (1395)
|||-.+|+.
T Consensus 298 iWd~~~Gk~ 306 (703)
T KOG2321|consen 298 IWDECTGKP 306 (703)
T ss_pred hcccccCCc
Confidence 999988864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=118.32 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=87.9
Q ss_pred cCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEE
Q 039790 375 HDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELK 450 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~ 450 (1395)
..+.|.+++|+|+| ..|+. |..++.|.|||++ ++.+..+. .. .+..|.|+ |+|++|+++|. ..|.|.
T Consensus 58 ~~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~-~~n~i~ws----P~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 58 KEGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQ-PRNTISWS----PDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-ccEeEeec--CC-CceEEEEC----CCCCEEEEEEccCCCcEEE
Confidence 34579999999999 55443 4467899999996 77777775 33 68899999 99999999873 346899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC------CCeEEEEEcC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK------KNAIYAIHMD 518 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~------Dg~I~iWdl~ 518 (1395)
+||+++. +++.++.... ...+.|+|||++|+++.. |+.++||++.
T Consensus 129 ~wd~~~~------------~~i~~~~~~~-----------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 129 FWDVRKK------------KKISTFEHSD-----------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEECCCC------------EEeeccccCc-----------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9999877 7776665322 125899999999999874 7889999985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=130.15 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
-+...|++||||| +||++|+.|..|.||.+..++.+..-.||+. ||..|+|.
T Consensus 332 FGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 332 FGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKS-WVSVVAFD 383 (636)
T ss_pred ccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEecccccc-ceeeEeec
Confidence 3568999999999 8999999999999999999999999999998 99999997
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-09 Score=115.32 Aligned_cols=147 Identities=15% Similarity=0.257 Sum_probs=104.6
Q ss_pred EEEEecCCCEEEEEEc----------CCeEEEEEC--CCCceEEec-cCCCCeEEEEEeeCCCCEEEEE--ECCCcEEEE
Q 039790 221 GRQIAVNRNYICYGLK----------LGNIRILNI--ITALRSLLR-GHTQRVTDMAFFAEDVHLLASA--SVDGRFFIW 285 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~----------DG~IrIWd~--~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSg--s~DgtV~IW 285 (1395)
.+.|+++|++|+.-.. -|...||.+ .......+. ...+.|.+++| +|+|+.|+.+ ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W-sP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW-SPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE-CcCCCEEEEEEccCCcccEEE
Confidence 4568888887765433 133445544 333333332 23457999999 8888886554 456789999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|++ ++ .
T Consensus 89 d~~-~~--------------~----------------------------------------------------------- 94 (194)
T PF08662_consen 89 DVK-GK--------------K----------------------------------------------------------- 94 (194)
T ss_pred cCc-cc--------------E-----------------------------------------------------------
Confidence 986 22 0
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
+..+ +...++.|.|+|+| ++|++|+.+ |.|.|||+++.+.+.++. |. .++.++|+ |||++|+++
T Consensus 95 ---i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~--~~t~~~Ws----PdGr~~~ta 161 (194)
T PF08662_consen 95 ---IFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS--DATDVEWS----PDGRYLATA 161 (194)
T ss_pred ---eEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccc-cC--cEEEEEEc----CCCCEEEEE
Confidence 1111 23466789999999 788888754 669999999999888876 43 47999999 999999998
Q ss_pred ecC-----CCeEEEEECC
Q 039790 443 GPL-----NRELKIWASA 455 (1395)
Q Consensus 443 Gs~-----Dg~I~IWDl~ 455 (1395)
.+. |+.++||++.
T Consensus 162 ~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeccceeccccEEEEEec
Confidence 753 8899999985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=117.63 Aligned_cols=273 Identities=12% Similarity=0.195 Sum_probs=175.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ceEEeccCC------------CCeEEEEEeeC-CCCEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LRSLLRGHT------------QRVTDMAFFAE-DVHLLAS 275 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~~~l~~H~------------~~V~slaf~s~-dg~~LaS 275 (1395)
..+-|.+|.|...|.+||+|.++|.|.+|.-... -...+..|. ..|..+.|+.+ +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3467889999999999999999999999965432 123444553 46888999543 3346777
Q ss_pred EECCCcEEEEECCCCCCCCCC----cccccc-----------------eEEEEEEe-cCCCCCccEEEEeCCCCeEEEEE
Q 039790 276 ASVDGRFFIWNITEGPDEEDK----PQILGK-----------------IVVAIQIL-ADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~----~~~~~~-----------------~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
.+.|.+|++|.+......... ...... ...+.+++ ..|...+.++.++.++. .+.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec
Confidence 888999999999875422200 000000 00111222 23556677888888875 45556
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH-----DGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h-----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
.+=.|..|...-.... |. +.-++.| ..-|++..|+|..-++|+-.+..|+||+-|+|.
T Consensus 183 DdLRINLWnlei~d~s--Fn---------------IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS--FN---------------IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc--ee---------------EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6666666655332211 10 1112222 345888999998778999999999999999995
Q ss_pred CceeE----EecCCCC-----------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 409 STPLA----VLRPYDG-----------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 409 g~~l~----tl~~h~~-----------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
..+.- .|..... ..|..|.|+ .+|+|+++ - .--+|+|||+... .+.+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs----~sGryils-R-Dyltvk~wD~nme-----------~~pv~ 308 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFS----HSGRYILS-R-DYLTVKLWDLNME-----------AKPVE 308 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEc----cCCcEEEE-e-ccceeEEEecccc-----------CCcce
Confidence 43211 1110000 168899999 89999997 2 3489999999532 15666
Q ss_pred EEeccCcccccc-----ccccc-ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 474 TLELKSSAELRL-----EDAFF-NQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 474 tl~~h~~~i~~~-----~~~~~-~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
++..|...-... .++.| .--++|+.++.++++|+..+.++++++..|..
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 776664321110 11112 22578999999999999999999999877653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=134.91 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=155.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+.++++|..-+.+++=+........+ .++|....+ ..+...++.++.+..+.+||...+..........--...+.
T Consensus 61 ~~~~v~~~~~~~v~~~~~~~~~~~~~---s~wi~g~~l-~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEASNQIIERF---SDWIFGAKL-FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred cceEEEEEeecceeecchhhhhhhhc---cccccccch-hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 34566665544454433333222222 234444455 45667888888889999999987652111100000000011
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
. .+.++++.-++.++..-+.++.|....... -..+.||.+.|.++.|+-|
T Consensus 137 ~----------~~g~s~~~~~i~~gsv~~~iivW~~~~dn~--------------------p~~l~GHeG~iF~i~~s~d 186 (967)
T KOG0974|consen 137 L----------IIGDSAEELYIASGSVFGEIIVWKPHEDNK--------------------PIRLKGHEGSIFSIVTSLD 186 (967)
T ss_pred E----------EEeccCcEEEEEeccccccEEEEeccccCC--------------------cceecccCCceEEEEEccC
Confidence 1 122233333566666778888887642111 1256789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
| +++++.|.|.++|+|++.+++.+. +.-+|.. .|+.++|. |+ .++++| .|.+.++|+...
T Consensus 187 g-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~----~n--~i~t~g-edctcrvW~~~~---------- 247 (967)
T KOG0974|consen 187 G-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFL----PN--RIITVG-EDCTCRVWGVNG---------- 247 (967)
T ss_pred C-cEEEEEecCcceeeeecccccccCcccccccc-eeEEEEec----cc--eeEEec-cceEEEEEeccc----------
Confidence 8 899999999999999999987766 7778998 99999998 66 888877 999999997643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+..|+.|..... +.++.+.+..++++++.|+.+++|++..
T Consensus 248 ---~~l~~y~~h~g~~i--------w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 ---TQLEVYDEHSGKGI--------WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---ceehhhhhhhhcce--------eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44457777765422 3588889999999999999999999875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=117.60 Aligned_cols=220 Identities=11% Similarity=0.137 Sum_probs=160.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~ 335 (1395)
-..+|+|.+| +.|+..++.+.....|.||...... ......++..|+..++.|+|.|..++|+.++.+
T Consensus 9 ~~~pitchAw-n~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 9 LLEPITCHAW-NSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred ccCceeeeee-cCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4568999999 8999999999999999999988655 223567788899999999999999999999999
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----e
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----P 411 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~ 411 (1395)
+.-++|.....+. -++..++..|...+++|.|+|.. +.||+||.-+.|.||-++.-. .
T Consensus 77 rnayVw~~~~~~~-----------------WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 77 RNAYVWTQPSGGT-----------------WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred CCccccccCCCCe-----------------eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehh
Confidence 9988886533221 12234455588999999999998 899999999999999876532 2
Q ss_pred eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC--CCCCCCC----CcccccEEEEEeccCcccccc
Q 039790 412 LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE--EGWLLPS----DIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 412 l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg--~~~~~~~----~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
.+.-+.+.. .|++++|. |++-.|++ |+.|+..|||..--. +..--+. ...-+.++..+...
T Consensus 139 KhikkPirS-tv~sldWh----pnnVLlaa-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~------- 205 (361)
T KOG1523|consen 139 KHIKKPIRS-TVTSLDWH----PNNVLLAA-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS------- 205 (361)
T ss_pred hhhCCcccc-ceeeeecc----CCcceecc-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-------
Confidence 223345555 89999997 88877776 559999999975211 0000000 00111222222222
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+-+...+.|+++|..|+-.+.|..|.+-|....
T Consensus 206 --ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 206 --GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred --CCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 223456999999999999999999999987643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-10 Score=126.68 Aligned_cols=198 Identities=12% Similarity=0.048 Sum_probs=142.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.++...++..|++++.||++|+|+ | |+ ...+.....|.+.|.++.|++||++
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~-~-Ps--------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWE-W-PS--------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEe-c-Cc--------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 467777889999999999999999 3 11 1334455578899999999999999
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEe--ccCCCCeEEEEEeeCCC-----CEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLL--RGHTQRVTDMAFFAEDV-----HLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l--~~H~~~V~slaf~s~dg-----~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|++-+.| ..+||+++++ .+... .+-......+.| ..|+ .+++....-+.|+.||+......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------- 269 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------- 269 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccc---------
Confidence 9999999 8999999998 23322 233445667788 6666 33444445567888877654310
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
.+......-.....+.++..+.+|.++.+++.++.+.+++....... ......|...|+.+
T Consensus 270 ~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-------------------~~vk~aH~~~VT~l 330 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-------------------QYVKEAHLGFVTGL 330 (398)
T ss_pred cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------------------EeehhhheeeeeeE
Confidence 01111112223446789999999998888888888888877543321 33446799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.|+||. +++++.+.|.++.|.-+.
T Consensus 331 tF~Pds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 331 TFSPDS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEcCCc-CcccccccCCceeEEEEe
Confidence 999998 899999999888887654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-08 Score=123.99 Aligned_cols=212 Identities=12% Similarity=0.105 Sum_probs=138.1
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.++|...+....+..+...+.+.+| ++||++|+.++.+ ..|++||+.++.. .......
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~-Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------~~~~~~~ 233 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAW-SPDGQKLAYVSFESGKPEIYVQDLATGQR---------------EKVASFP 233 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccC-CCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------EEeecCC
Confidence 4688889877666667778888999999 9999999988754 4799999988751 1112233
Q ss_pred CCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.....++|+|++..++.+...+ .++.|+.... . ...+..+........|++|| .+
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~--------------------~~~l~~~~~~~~~~~~s~dg-~~ 291 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-Q--------------------LTRLTNGPGIDTEPSWSPDG-KS 291 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCCC-C--------------------EEECCCCCCCCCCEEECCCC-CE
Confidence 4455689999998887665432 3555554221 1 22233344445577899998 66
Q ss_pred EEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC---eEEEEECCCCCCCCCCCC
Q 039790 392 LASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR---ELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 392 LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~ 465 (1395)
|+.++. ++ .|.+||+.+++.. .+..+.. .+..+.|+ |+|++|+.++ .++ .|.+||+.++
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~s----pdg~~i~~~~-~~~~~~~i~~~d~~~~-------- 356 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWS----PDGDLIAFVH-REGGGFNIAVMDLDGG-------- 356 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEEC----CCCCEEEEEE-ccCCceEEEEEeCCCC--------
Confidence 655543 34 5888888777643 4443444 67889999 9999998876 554 7888888765
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEc
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHM 517 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl 517 (1395)
.. ..+.... .. ....|++||.+|+..+.++ .+++++.
T Consensus 357 ----~~-~~l~~~~-~~---------~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 357 ----GE-RVLTDTG-LD---------ESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ----Ce-EEccCCC-CC---------CCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 22 2222111 11 1257899999888877654 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=119.69 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=148.0
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECC--CcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVD--GRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--gtV~IWdl 287 (1395)
..+.|.+++.. | ..|++|-.+|.+.+|..+.+ .+..+..+ ..+..|.-+..+..++++||.. ..+.|||+
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 34455554332 3 46778888999999999854 44455544 4566777655666788889998 88999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
...+.+. .++.+..=.+--.....++.+.|-+. ...|+++...+.+.+||.....+
T Consensus 181 e~~~qiw-----~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR----------------- 238 (412)
T KOG3881|consen 181 EQSKQIW-----SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR----------------- 238 (412)
T ss_pred ccceeee-----eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-----------------
Confidence 9864111 11110000000001122345666665 55666666777777777754332
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
++..|.-....|+++...|++ +++++|..-|.+..||++.++.+.. +++-.| .|++|... |.+++|++||
T Consensus 239 --PV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~h----p~~~~las~G- 309 (412)
T KOG3881|consen 239 --PVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCH----PTHPVLASCG- 309 (412)
T ss_pred --ceeEeccccCcceeeeecCCC-cEEEEecccchhheecccCceeeccccCCccC-CcceEEEc----CCCceEEeec-
Confidence 245555567889999999998 8999999999999999999988877 888888 99999997 9999999988
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|+.|||+|+.+.
T Consensus 310 LDRyvRIhD~ktr 322 (412)
T KOG3881|consen 310 LDRYVRIHDIKTR 322 (412)
T ss_pred cceeEEEeecccc
Confidence 9999999999885
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-09 Score=117.70 Aligned_cols=253 Identities=11% Similarity=0.070 Sum_probs=171.2
Q ss_pred CCCCEEEEEEecCCC--EEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 215 DPGLVLGRQIAVNRN--YICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spdg~--~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
....|..++|..++. .|..++.|..+..+.+.... .......+..|.+++. -...|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEE
Confidence 335677777876653 34444466677777666542 2244556778888887 34578899999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
....+..- ...+..+. ....+..+.-++...+|++.|... .+.+|+... . ...|+....-.-
T Consensus 131 ~~k~~d~h-------ss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~-~-~qiw~aKNvpnD-- 195 (412)
T KOG3881|consen 131 HDKSGDLH-------SSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ-S-KQIWSAKNVPND-- 195 (412)
T ss_pred eccCCccc-------cccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeeccc-c-eeeeeccCCCCc--
Confidence 99966511 11111111 123445666677777888866544 344444433 2 223333221100
Q ss_pred cccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.+. +. -.-+++++.|-+. . +.||+++.-+.||+||.+.+ +++..|..-.. +|+++... |+|.++
T Consensus 196 -~L~--Lr----VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~----p~gn~I 262 (412)
T KOG3881|consen 196 -RLG--LR----VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLT----PSGNFI 262 (412)
T ss_pred -ccc--ce----eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccC-cceeeeec----CCCcEE
Confidence 000 00 1235678888776 4 79999999999999999976 78888886665 99999998 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++. .-+.+..||++.+ +.+.. |++..+.+.. +...+.+.+|++++-|..|||+|+.
T Consensus 263 y~gn-~~g~l~~FD~r~~------------kl~g~~~kg~tGsirs---------ih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 263 YTGN-TKGQLAKFDLRGG------------KLLGCGLKGITGSIRS---------IHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred EEec-ccchhheecccCc------------eeeccccCCccCCcce---------EEEcCCCceEEeeccceeEEEeecc
Confidence 9865 8899999999988 65554 6666666543 7778899999999999999999998
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
+.
T Consensus 321 tr 322 (412)
T KOG3881|consen 321 TR 322 (412)
T ss_pred cc
Confidence 73
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=128.81 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=176.3
Q ss_pred CEEEEEEecCC--CEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 218 LVLGRQIAVNR--NYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Spdg--~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|-.+.|++.. .+-++......-.||++... ....+.||+..|+++.|+..+...|++|+.|-.|..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 45567787743 34444444455568998653 3457789999999999988888999999999999999999865
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+..........+.|.|+.....+++...++.+.+|+.+..+.. +..
T Consensus 149 -------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p-------------------l~s 196 (1081)
T KOG0309|consen 149 -------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP-------------------LCS 196 (1081)
T ss_pred -------------cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc-------------------eEE
Confidence 234444455566778999999999999999999999988665432 667
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc--EEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI--VLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I 449 (1395)
+++|...|+.++|...-...+.+++.||+|++||......-....--...+|+.-.|. |-|. ++.-.- .+..+
T Consensus 197 ~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~----Pfg~g~~~mp~~-G~n~v 271 (1081)
T KOG0309|consen 197 LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL----PFGEGYCIMPMV-GGNMV 271 (1081)
T ss_pred ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc----ccCceeEecccc-CCeee
Confidence 7789999999999876546899999999999999876532222111122367777776 5444 322211 23356
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccce---EEEE--eCCCCEEEEEeCCCeEEEEEcCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQ---VVAL--NRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~---~l~~--S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.+++.++...+.. .....+.+.+|.+|.+.+.. |... -+.+ ......|++-+.|..+++|-+..
T Consensus 272 ~~~~c~n~d~e~n--~~~~~~pVh~F~GH~D~V~e----FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 272 PQLRCENSDLEWN--VFDLNTPVHTFVGHDDVVLE----FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeccccchhhhhc--cccCCcceeeecCcchHHHH----HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 6665554311000 00134778999999877543 1100 0111 22235799999999999999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=120.24 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=147.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-Eec---cCCCCeEEEEEe-------------------eCCCCEEEEEECCCcE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLR---GHTQRVTDMAFF-------------------AEDVHLLASASVDGRF 282 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~---~H~~~V~slaf~-------------------s~dg~~LaSgs~DgtV 282 (1395)
+.+.|+|+...||.+||||...+.++ .|. .-++..++..|. +.+...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45679999999999999999987543 222 123444555552 2344568888889999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+|++..|+ + ...+. +.|.+.|.++.|+.+-..|..++.+..++.|.......
T Consensus 83 ~~ys~~~g~------------i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------- 136 (541)
T KOG4547|consen 83 LLYSVAGGE------------I-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------- 136 (541)
T ss_pred EEEEecCCe------------E-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-------------
Confidence 999999887 1 23333 67888999999999998999999888888887643211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-CCCcEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLI 440 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-pdg~~L~ 440 (1395)
++.+......+.+++++||| ..|++++ +.|++||+.+++.+.+|.||.+ +|+++.|..... --|.+++
T Consensus 137 -------~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 137 -------IRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred -------eeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceee
Confidence 44555667788999999998 7888876 6899999999999999999998 999999983211 1278888
Q ss_pred EEecCCCeEEEEECCC
Q 039790 441 TGGPLNRELKIWASAE 456 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~t 456 (1395)
++...+.-|.+|-+..
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 8766777888997765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-10 Score=130.39 Aligned_cols=193 Identities=12% Similarity=0.174 Sum_probs=155.0
Q ss_pred eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 260 VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 260 V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
-+.+.| +.+|..|+.|+..|.|-.+|..++.. .+.-.-...|.++.|-... .+|+++-.+.++
T Consensus 132 PY~~~y-trnGrhlllgGrKGHlAa~Dw~t~~L---------------~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDY-TRNGRHLLLGGRKGHLAAFDWVTKKL---------------HFEINVMETVRDVTFLHNE-QFFAVAQKKYVY 194 (545)
T ss_pred Ceeeee-cCCccEEEecCCccceeeeeccccee---------------eeeeehhhhhhhhhhhcch-HHHHhhhhceEE
Confidence 456888 89999999999999999999998872 1111223345667775544 578888888888
Q ss_pred EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC
Q 039790 340 KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD 419 (1395)
Q Consensus 340 ~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~ 419 (1395)
++|...+. ++.+.. ...|..+.|-|.. .+|++++..|.++--|+.+|+.+..+..-.
T Consensus 195 vYD~~GtE---------------------lHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 195 VYDNNGTE---------------------LHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred EecCCCcE---------------------Eeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccC
Confidence 88764322 444543 3578999999998 899999999999999999999999998777
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
+ .+..++-+ |.+..+-++. .+|+|.+|..... ..+..+-.|.+.+. .+++.++
T Consensus 252 G-~~~vm~qN----P~NaVih~Gh-snGtVSlWSP~sk------------ePLvKiLcH~g~V~---------siAv~~~ 304 (545)
T KOG1272|consen 252 G-RTDVMKQN----PYNAVIHLGH-SNGTVSLWSPNSK------------EPLVKILCHRGPVS---------SIAVDRG 304 (545)
T ss_pred C-ccchhhcC----CccceEEEcC-CCceEEecCCCCc------------chHHHHHhcCCCcc---------eEEECCC
Confidence 7 88888888 8887777755 8999999998877 66666677777764 4999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 039790 500 GLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|.|+++.+.|+.|+|||+..
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CcEEeecccccceeEeeecc
Confidence 99999999999999999976
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-09 Score=115.73 Aligned_cols=210 Identities=16% Similarity=0.249 Sum_probs=144.5
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR 337 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ 337 (1395)
-.+..++| +++-..++++..|-.|++||-.... ...+.......+++++|.|.+...+++|...+
T Consensus 99 ~dlr~~aW-hqH~~~fava~nddvVriy~ksst~--------------pt~Lks~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 99 IDLRGVAW-HQHIIAFAVATNDDVVRIYDKSSTC--------------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred cceeeEee-chhhhhhhhhccCcEEEEeccCCCC--------------CceecchhhcceeEEEeccCCcceeeeeecce
Confidence 35778899 5666778999999999999977622 12233445677899999999999999999999
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceeEEec
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~tl~ 416 (1395)
|.+|.......... .++. .......+....|| ..|+++.|.+|| ..|++++. |..|.|||..++.++....
T Consensus 164 IciW~~s~tln~~r-----~~~~-~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 164 ICIWSDSRTLNANR-----NIRM-MSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred eEEEEcCccccccc-----cccc-ccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc
Confidence 99998765432110 0000 00001112333455 689999999998 78888775 5789999999987666553
Q ss_pred CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE
Q 039790 417 PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL 496 (1395)
Q Consensus 417 ~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~ 496 (1395)
..-+ .++-+.|| |||.+|+++. -|+..++|.... .|.+.+-..+.+ . ++..+|
T Consensus 236 ~glg-g~slLkwS----Pdgd~lfaAt-~davfrlw~e~q-----------~wt~erw~lgsg-r---------vqtacW 288 (445)
T KOG2139|consen 236 KGLG-GFSLLKWS----PDGDVLFAAT-CDAVFRLWQENQ-----------SWTKERWILGSG-R---------VQTACW 288 (445)
T ss_pred cCCC-ceeeEEEc----CCCCEEEEec-ccceeeeehhcc-----------cceecceeccCC-c---------eeeeee
Confidence 2233 69999999 9999999876 899999996543 344444333333 2 346899
Q ss_pred eCCCCEEEEEe-CCCeEEEEEc
Q 039790 497 NRAGLFLLANA-KKNAIYAIHM 517 (1395)
Q Consensus 497 S~dg~~LaSgs-~Dg~I~iWdl 517 (1395)
+|+|++|+... ..-.||-..+
T Consensus 289 spcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEee
Confidence 99998765544 4444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-08 Score=116.85 Aligned_cols=321 Identities=16% Similarity=0.195 Sum_probs=200.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----------------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA----------------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----------------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....|+.|+....|||+|+.||.++|..+.+. .-+++.||.+.|.-+.| ..+...|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW-Ne~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW-NENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe-ccccccccccCCCc
Confidence 55789999999999999999999999988752 12478899999999999 77788899999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE-------EcCCCC----cc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI-------DSNRVG----KG 349 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~-------d~~~~~----~~ 349 (1395)
.|.||-+-.|...+.. +.....+.|.+++|..+|..+..+-.+|.+++- |..... ..
T Consensus 94 lIiVWmlykgsW~EEM------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~h 161 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEM------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAH 161 (1189)
T ss_pred eEEEEeeecccHHHHH------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccc
Confidence 9999999887621111 112334567788999999888777777666542 221110 01
Q ss_pred ccccCCC-------------------CC--ccCccccccceEEEcccCCCeEEEEEe--------cCCCcEEEEEeCCCc
Q 039790 350 ERFSAEE-------------------PL--KCPVDELINGVQLVGKHDGEITELSMC--------QWLTTRLASASLDGT 400 (1395)
Q Consensus 350 ~~~s~~~-------------------~~--~~~~~~~~~~~~~l~~h~~~V~slafs--------pdg~~~LaSgs~Dg~ 400 (1395)
..|+.+. .+ ++.......+...+......|-.+.|. ||. -.|+.+-..|.
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGR 240 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCce
Confidence 1222221 11 111111111112222222335556663 344 48899999999
Q ss_pred EEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC---------CeEEEEECCCCCCCCCCCCccccc
Q 039790 401 VKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN---------RELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 401 IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D---------g~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+.|-.-.+. .++-.-.| ..|....|+ ++|..|+++| .| +.|.+|..- | +
T Consensus 241 ~QiMR~eND~~Pvv~dtg---m~~vgakWn----h~G~vLAvcG-~~~da~~~~d~n~v~Fysp~-G------------~ 299 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDTG---MKIVGAKWN----HNGAVLAVCG-NDSDADEPTDSNKVHFYSPY-G------------H 299 (1189)
T ss_pred ehhhhhcCCCCCeEEecc---cEeecceec----CCCcEEEEcc-CcccccCccccceEEEeccc-h------------h
Confidence 888754433 33333223 378999999 9999999988 43 245555422 2 6
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
.+.+|+..+..+.. ++|-..|..++- .-|+.||+-+++. .|...|-....++...+..
T Consensus 300 i~gtlkvpg~~It~---------lsWEg~gLriA~-AvdsfiyfanIRP---------~ykWgy~e~TvVy~y~~~e--- 357 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITG---------LSWEGTGLRIAI-AVDSFIYFANIRP---------EYKWGYIEETVVYVYQKEE--- 357 (1189)
T ss_pred heEEEecCCceeee---------eEEcCCceEEEE-EecceEEEEeecc---------cceEEEeeeEEEEEEccCC---
Confidence 77788877766543 888777766654 4588999988754 2555554444555555543
Q ss_pred CcCCCCeEEEEEcCCCceeeecccceEEecCCCCC-eecccCCCceE
Q 039790 551 SPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN-AELEKTDSNAT 596 (1395)
Q Consensus 551 ~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~-l~~~~sd~~v~ 596 (1395)
.-...|.+||..+.+-.--....-.|+++..+. +-....|++++
T Consensus 358 --~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 358 --LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred --CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCC
Confidence 224579999988864221112223477777765 22223344443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=132.47 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=126.1
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+-++.+.-|+++|+--+.|.+|+..... -..+.||.+.|.++.| +.||.+++++++|+++|+|++.+.+..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~------- 210 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVL------- 210 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEE-ccCCcEEEEEecCcceeeeeccccccc-------
Confidence 3467788899999999999999988433 3358999999999999 999999999999999999999987610
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
.....+|...|+
T Consensus 211 --------------------------------------------------------------------~~~~fgHsaRvw 222 (967)
T KOG0974|consen 211 --------------------------------------------------------------------GCTGFGHSARVW 222 (967)
T ss_pred --------------------------------------------------------------------CcccccccceeE
Confidence 001126999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+.|.+. +++|++.|-+.++|+. .+..+.++++|.+..|+.++.. ++...++++| .|+.+++||+...
T Consensus 223 ~~~~~~n---~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~----~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN---RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVP----IGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc---eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEc----CCceEEEeec-cCcchhhhhhhcc
Confidence 9999984 8999999999999964 4666779999998899999996 6666777766 9999999998654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=126.15 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=124.7
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCe
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ 328 (1395)
....|.||++.|+++.| +.+|.+|++|+.|-.+.|||.-..+..
T Consensus 42 lE~eL~GH~GCVN~LeW-n~dG~lL~SGSDD~r~ivWd~~~~Kll----------------------------------- 85 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEW-NADGELLASGSDDTRLIVWDPFEYKLL----------------------------------- 85 (758)
T ss_pred hhhhhccccceecceee-cCCCCEEeecCCcceEEeecchhccee-----------------------------------
Confidence 45678999999999999 899999999999999999998754410
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCC
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~ 407 (1395)
...-.||...|.++.|-|... .++++|..|..|++||+.
T Consensus 86 ----------------------------------------hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 86 ----------------------------------------HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ----------------------------------------eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 111236999999999988642 588999999999999997
Q ss_pred CC----------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 408 KS----------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 408 sg----------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.. ..++.+..|.. .|..++-. |++...+-+++.||+|+-+|++.. ..|-.....
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~-rVKria~~----p~~PhtfwsasEDGtirQyDiREp-----------h~c~p~~~~ 189 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTD-RVKRIATA----PNGPHTFWSASEDGTIRQYDIREP-----------HVCNPDEDC 189 (758)
T ss_pred cccccccccCccchhhhhhhhhh-hhhheecC----CCCCceEEEecCCcceeeecccCC-----------ccCCccccc
Confidence 41 34556667876 89999988 888544444459999999999864 011111111
Q ss_pred cCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcC
Q 039790 478 KSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.....-...-.--.++.++|. ..+|+.|+.|-..++||..
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1100000000000124666654 5688999999999999964
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-08 Score=121.62 Aligned_cols=203 Identities=16% Similarity=0.175 Sum_probs=137.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCC-
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDG- 280 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dg- 280 (1395)
+...+.+..+...+....|++||++|++++.+ ..|++||+.++....+..+.+.+.+++| ++||+.|+ +.+.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAF-SPDGSKLAVSLSKDGN 257 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEECCCCC
Confidence 34445566666778899999999999998754 4799999999876666667777888999 89998776 444444
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCC
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~ 356 (1395)
.|++||+.++.. ..+..+........|++++..++.++..+ .++.++... +.
T Consensus 258 ~~i~~~d~~~~~~---------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-------- 313 (417)
T TIGR02800 258 PDIYVMDLDGKQL---------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-------- 313 (417)
T ss_pred ccEEEEECCCCCE---------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC--------
Confidence 589999987651 11122233344678999998887766532 355554321 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+..+...+..+.|+|+| .+|+.++.++ .|.+||+.++.. ..+.... ......|+
T Consensus 314 ------------~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~p~~s---- 373 (417)
T TIGR02800 314 ------------VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG--LDESPSFA---- 373 (417)
T ss_pred ------------EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-EEccCCC--CCCCceEC----
Confidence 22333355667889999998 7777777765 789999988653 3333222 34567898
Q ss_pred CCCcEEEEEecCCC--eEEEEE
Q 039790 434 PQHIVLITGGPLNR--ELKIWA 453 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg--~I~IWD 453 (1395)
|||++|+.+...++ .+.+.+
T Consensus 374 pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 374 PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCCCEEEEEEeCCCcEEEEEEE
Confidence 99999888764443 344444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-08 Score=114.75 Aligned_cols=322 Identities=11% Similarity=0.089 Sum_probs=173.8
Q ss_pred CEE-EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYI-CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~L-asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+++ ++-..+|.|.|+|..+.+ +..+......-..+.| ++||++++.++.||.|.+||+.+++ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~-s~Dgr~~yv~~rdg~vsviD~~~~~-----------~v~~ 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF-SPDGRYLYVANRDGTVSVIDLATGK-----------VVAT 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE--TT-SSEEEEEETTSEEEEEETTSSS-----------EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe-cCCCCEEEEEcCCCeEEEEECCccc-----------EEEE
Confidence 344 445678999999999875 5566544433345667 9999999999999999999999987 2222
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-------ccCCC
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-------KHDGE 378 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-------~h~~~ 378 (1395)
+ ..+ .....++++++|+++++++. .+.+.++|...... ++.+. .....
T Consensus 74 i---~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--------------------v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 74 I---KVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--------------------VKTIPTGGMPVDGPESR 129 (369)
T ss_dssp E---E-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--------------------EEEEE--EE-TTTS---
T ss_pred E---ecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccc--------------------eeecccccccccccCCC
Confidence 2 222 23457999999999988875 56677777644321 22221 12346
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+..+..++....++++.-.-+.|-+-|......+..-.-+.+.......|+ |+++|++++...++.|-++|..++
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d----pdgry~~va~~~sn~i~viD~~~~- 204 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD----PDGRYFLVAANGSNKIAVIDTKTG- 204 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-----TTSSEEEEEEGGGTEEEEEETTTT-
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC----cccceeeecccccceeEEEeeccc-
Confidence 778888888733444444458888889877654432221222368889999 999998887667889999999887
Q ss_pred CCCCCCCcccccEEEEEeccCcc----cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 459 GWLLPSDIESWKCTQTLELKSSA----ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~----i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
+.+..+...... ........+..+......+...++.-....+.+|+.. .++.+...
T Consensus 205 -----------k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~--------~wkvv~~I 265 (369)
T PF02239_consen 205 -----------KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY--------AWKVVKTI 265 (369)
T ss_dssp -----------EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT--------BTSEEEEE
T ss_pred -----------eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh--------cCeEEEEE
Confidence 666655432211 1000000000011112222222222222223333322 23344444
Q ss_pred eccccEEEEecCCCCc--------CcCCCCeEEEEEcCCCceeee-c---ccceEEecCCCCC---eecccCCCceEEEe
Q 039790 535 TVTMPILSLTGTTTDA--------SPDGEHIVQIYCVQTQAIQQY-A---LDLSQCLPPPLEN---AELEKTDSNATRAF 599 (1395)
Q Consensus 535 ~~~~~ils~~~~~~d~--------~~s~dg~V~lWdv~t~~i~~~-~---~~~~~cl~~s~d~---l~~~~sd~~v~~iW 599 (1395)
.....-+.+.-+. +. +..+...|.|+|+++.++... . ......+.|+.|+ +.+....++-+.+|
T Consensus 266 ~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 3332212111111 11 113467899999999866422 1 1125566777776 33333333256699
Q ss_pred ecCCCCcceeec
Q 039790 600 DVANPDGSASLE 611 (1395)
Q Consensus 600 D~~tg~~~~~l~ 611 (1395)
|..|.+..+.+.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999888776
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-08 Score=109.93 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=157.3
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
+.+.+.+.|.++|+|- +--. |+.-+ .|. ..-...++++.+.++...|++|-.+|
T Consensus 37 ~gv~~~s~drtvrv~l-krds------------------~q~wp-----sI~--~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWL-KRDS------------------GQYWP-----SIY--HYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred CCeEEccccceeeeEE-eccc------------------cccCc-----hhh--hhCCCCceEeeeeccceEEEEEEecc
Confidence 6789999999999997 2111 11111 011 11246788899999999999999999
Q ss_pred eEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc----ccceEEEEEE
Q 039790 239 NIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI----LGKIVVAIQI 309 (1395)
Q Consensus 239 ~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~----~~~~i~~l~~ 309 (1395)
++.-+.+... ..+....|..+|..+-| +....++++++.|..+..--.+.+..+..+... .........+
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEe-cCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 9998877653 34566789999999999 788899999999988776666665522211000 0000111222
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
.+++.+.++.+.+.+.+ ...+..+.+|.+.+++++|.+..
T Consensus 170 vGd~~gqvt~lr~~~~~---------------------------------------~~~i~~~~~h~~~~~~l~Wd~~~- 209 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNG---------------------------------------CQLITTFNGHTGEVTCLKWDPGQ- 209 (404)
T ss_pred ecccccceEEEEEeecC---------------------------------------CceEEEEcCcccceEEEEEcCCC-
Confidence 33333333222222211 11256788999999999999977
Q ss_pred cEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|.+|..|..|.+||+--++ ....+.+|.+ .|..+.+. ..-+.|++++ .||.|.+||++..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~----~~t~~l~S~~-edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYA----QHTRQLISCG-EDGGIVVWNMNVK 272 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchh-hhhhhhhh----hhheeeeecc-CCCeEEEEeccce
Confidence 899999999999999987653 3457778887 89999987 6677888877 9999999999765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.8e-08 Score=119.04 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=136.3
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.|.++|.+++....+..+...+...+| ++||+.|+..+.+ ..|++||+.++.. +.+.....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~w-SpDG~~la~~s~~~~~~~l~~~~l~~g~~---------------~~l~~~~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRW-SPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------------EQITNFEG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeE-CCCCCEEEEEEcCCCCCEEEEEECCCCCE---------------EEccCCCC
Confidence 488889887776777778888999999 8999999877654 3699999988761 11112223
Q ss_pred CccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
......|+|++..++.+... + .+++++... +. ...+..+........|+||| ..|
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~--------------------~~~lt~~~~~~~~~~~spDg-~~i 301 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ--------------------LSRVTNHPAIDTEPFWGKDG-RTL 301 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC--------------------eEEcccCCCCcCCeEECCCC-CEE
Confidence 34468999999988765543 2 355555432 11 22233455556678999999 555
Q ss_pred EEEe-CCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcc
Q 039790 393 ASAS-LDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs-~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+..+ .+| .|.+||+.+++..... .... ......|+ |||++|+.....++ .|.+||+.++
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~S----pdg~~i~~~~~~~~~~~l~~~dl~tg---------- 365 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLS----ADGKTLVMVHRQDGNFHVAAQDLQRG---------- 365 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEEC----CCCCEEEEEEccCCceEEEEEECCCC----------
Confidence 4444 444 5777888877643322 1222 34567899 99999988763444 5788898876
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMD 518 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~ 518 (1395)
.. ..+.. ... .....|++||.+|+..+.+ ..|+++++.
T Consensus 366 --~~-~~lt~-~~~---------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 --SV-RILTD-TSL---------DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred --CE-EEccC-CCC---------CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 32 22221 111 1125789999988877643 347777764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-07 Score=110.77 Aligned_cols=234 Identities=14% Similarity=0.241 Sum_probs=153.2
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCC-C-CEEEE-----EECCCcEEEEECCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAED-V-HLLAS-----ASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~d-g-~~LaS-----gs~DgtV~IWdl~tg~~ 292 (1395)
++..|+.|..+.|-- ..+.+++|+...-....-.-|...|..+.+ ++. . ..+++ .|.-+.|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~l-Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSL-SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEe-cCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 467788887754443 347899999987543333446778999999 554 2 23332 35566799999874320
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC------------eEEEEEcCCCCccccccCCCCCcc
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN------------RILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~------------~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
...+..-.++ ......+.|+..+.-+|+....+ .++.+... +
T Consensus 207 --------~~~~a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g------------- 260 (566)
T KOG2315|consen 207 --------HQPVANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--G------------- 260 (566)
T ss_pred --------cchhhhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--C-------------
Confidence 0011111111 12233678888888776655421 12222221 0
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
....+-....++|.++.|++++ +-|+. |-.-..+-|||++ +.++..|. .+ +=+++-|+ |.|++
T Consensus 261 ------~s~~V~L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr-~~~v~df~--eg-pRN~~~fn----p~g~i 325 (566)
T KOG2315|consen 261 ------ESVSVPLLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLR-GKPVFDFP--EG-PRNTAFFN----PHGNI 325 (566)
T ss_pred ------ceEEEecCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCC-CCEeEeCC--CC-CccceEEC----CCCCE
Confidence 0022222357899999999998 44433 4456789999975 56666653 44 67899999 99999
Q ss_pred EEEEecCC--CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC------CC
Q 039790 439 LITGGPLN--RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK------KN 510 (1395)
Q Consensus 439 L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~------Dg 510 (1395)
|+.+|..+ |.|-|||+.+. +++..++..... .+.|+|||.+++++.. |+
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~------------K~i~~~~a~~tt-----------~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNR------------KLIAKFKAANTT-----------VFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred EEEeecCCCCCceEEEeccch------------hhccccccCCce-----------EEEEcCCCcEEEEEeccccEEecC
Confidence 99998543 89999999887 888888765533 5899999999998874 78
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.++|||+..
T Consensus 383 g~KiwhytG 391 (566)
T KOG2315|consen 383 GIKIWHYTG 391 (566)
T ss_pred CeEEEEecC
Confidence 899999853
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=112.04 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=164.4
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
+.|.-+.|+.|..++..+ ..|+.|.+|++...+ ...+......+..++| +||| ++|.+...|-+|.||.+.+.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~W-SPdgrhiL~tseF~lriTVWSL~t~~-- 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISW-SPDGRHILLTSEFDLRITVWSLNTQK-- 125 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeE-CCCcceEeeeecceeEEEEEEeccce--
Confidence 456667788888776655 789999999998765 3356666778999999 8999 667778889999999999865
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc--------------CC-CCccccccCCCCC
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS--------------NR-VGKGERFSAEEPL 358 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~--------------~~-~~~~~~~s~~~~~ 358 (1395)
...+......+..++|+++|++.......+..-.+.. .. ...+..|++++.+
T Consensus 126 -------------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 126 -------------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred -------------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 1223333445567899999986666655443211110 00 1123445555544
Q ss_pred ccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------------------------
Q 039790 359 KCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKST--------------------------- 410 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--------------------------- 410 (1395)
.. +|+..-..+++.-|. -.+..++|+|.+ ++|+.|+.|+.+||.+--+.+
T Consensus 193 la-Vwd~~Leykv~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 193 LA-VWDNVLEYKVYAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred EE-EecchhhheeeeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 32 233222233332233 578999999988 899999999999986532111
Q ss_pred ---------------------------------eeEEecCCC-----CCCeeEEEEeecCCCCCcEEEEEec-CCCeEEE
Q 039790 411 ---------------------------------PLAVLRPYD-----GHPVNCVTFLIGPHPQHIVLITGGP-LNRELKI 451 (1395)
Q Consensus 411 ---------------------------------~l~tl~~h~-----~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~I 451 (1395)
.++.++... ...+.-++|+ +|..++++-.+ .-+.+-|
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs----~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS----CDSTYAATRNDKYPNALWL 346 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec----CCceEEeeecCCCCceEEE
Confidence 011111100 0146788999 89988888431 1246899
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
||+... +....+... ..+ ....|.|....|+.+.....+|+|...
T Consensus 347 Wdlq~l------------~l~avLiQk-~pi---------raf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 347 WDLQNL------------KLHAVLIQK-HPI---------RAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred Eechhh------------hhhhhhhhc-cce---------eEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 999875 322222211 111 246778888888877777889999864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=115.99 Aligned_cols=218 Identities=13% Similarity=0.107 Sum_probs=144.4
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.|||+|+|||+++.- .+.|-|.++-++..+..--+.|.-+.| ..|..+++ ....|+.|.+|++...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW-~ads~~ilC~~yk~~~vqvwsl~Qpe--------- 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEW-KADSCHILCVAYKDPKVQVWSLVQPE--------- 82 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheee-eccceeeeeeeeccceEEEEEeecce---------
Confidence 4699999999999865 777888887654433333457888999 66655544 55778899999999765
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
+ ...+..+...+..++|+|+|++++..+.-+.-+.+|.....+ ...+.--+..+.
T Consensus 83 --w---~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~~pK~~~k 137 (447)
T KOG4497|consen 83 --W---YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLPHPKTNVK 137 (447)
T ss_pred --e---EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEecccccCce
Confidence 1 122334556677899999998888777654444444333222 222332334568
Q ss_pred EEEEecCCCcEEEEEeCCCc---EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC----eEEEEE
Q 039790 381 ELSMCQWLTTRLASASLDGT---VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR----ELKIWA 453 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~---IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg----~I~IWD 453 (1395)
.++|++|| ++.+.++.-.. +.|..-.....++.++...- ..+.+.|+ |||.+|++ .|. .|.+|.
T Consensus 138 g~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~-DltgieWs----Pdg~~laV---wd~~Leykv~aYe 208 (447)
T KOG4497|consen 138 GYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI-DLTGIEWS----PDGNWLAV---WDNVLEYKVYAYE 208 (447)
T ss_pred eEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc-cccCceEC----CCCcEEEE---ecchhhheeeeee
Confidence 89999999 77777765322 33333334456666665554 67899999 99988876 333 222222
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
...| ...+.|+|.+++|+.|+.|+.+||.+-
T Consensus 209 ~~lG---------------------------------~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 209 RGLG---------------------------------LKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eccc---------------------------------eeEEEeccccceEEeeccchhhhhhce
Confidence 2111 124889999999999999999988653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=105.04 Aligned_cols=256 Identities=11% Similarity=0.130 Sum_probs=162.0
Q ss_pred CCEEEEEEecCCCEEEEEEc----CCeEEEEECCC--CceE---EeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLK----LGNIRILNIIT--ALRS---LLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWN 286 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~----DG~IrIWd~~~--~~~~---~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWd 286 (1395)
.....+++++++++|.+... +|.|..|++.. +.+. ........-..+++ .+++++|+++. .+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-DPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-CTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-ecCCCEEEEEEccCCeEEEEE
Confidence 34456779999999998876 57999998876 3332 23323445667888 89999888887 489999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEec----------CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILA----------DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~----------~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.... .+........ .......++.|+|++++++++..+ +.|.+++.......
T Consensus 116 l~~~g----------~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~------ 179 (345)
T PF10282_consen 116 LDDDG----------SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK------ 179 (345)
T ss_dssp ECTTS----------EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T------
T ss_pred ccCCc----------ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce------
Confidence 98732 1111211111 122334579999999998887764 56666655332110
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCc--eeEEecC----CCC-CCeeEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KST--PLAVLRP----YDG-HPVNCV 426 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg~--~l~tl~~----h~~-~~V~sV 426 (1395)
+.............-..++|+|++..+++..-.+++|.+|++. .+. .+..+.. ..+ .....|
T Consensus 180 ---------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 180 ---------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp ---------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred ---------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 0000111223456788999999995556666778999999988 442 2333321 121 157889
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
.++ |||++|.++...+++|.+|++.... ...+.+..+....... ..+.++++|++|+++
T Consensus 251 ~is----pdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~~~~G~~P---------r~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 251 AIS----PDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTVPTGGKFP---------RHFAFSPDGRYLYVA 309 (345)
T ss_dssp EE-----TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEEEESSSSE---------EEEEE-TTSSEEEEE
T ss_pred EEe----cCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEEeCCCCCc---------cEEEEeCCCCEEEEE
Confidence 999 9999999988788999999994321 1124444444332222 358999999988776
Q ss_pred e-CCCeEEEEEcCC
Q 039790 507 A-KKNAIYAIHMDY 519 (1395)
Q Consensus 507 s-~Dg~I~iWdl~~ 519 (1395)
. .++.|.+|+++.
T Consensus 310 ~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 310 NQDSNTVSVFDIDP 323 (345)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ecCCCeEEEEEEeC
Confidence 5 778999998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-08 Score=119.85 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=125.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEE-EECCCc--EE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLAS-ASVDGR--FF 283 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaS-gs~Dgt--V~ 283 (1395)
+.+..+...+.+..|+|||++|++.+.+ ..|++||+.++....+....+.....+| ++||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w-SPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRF-SPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeE-CCCCCEEEEEEeCCCCeEEE
Confidence 3444455677788999999999987643 2588999988865555544445567899 899997764 566665 78
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+||+.++.. ..+..+.......+|+|++..++.++..+ .+++++... +.
T Consensus 290 ~~dl~tg~~---------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~------------ 341 (448)
T PRK04792 290 VVDIATKAL---------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK------------ 341 (448)
T ss_pred EEECCCCCe---------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC------------
Confidence 888887651 11222334456789999999887776532 344444321 11
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
...+..+.......+|+||| ++|+..+ .++. |.++|+.++... .+.... ......|+ |||+
T Consensus 342 --------~~~Lt~~g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~--~d~~ps~s----pdG~ 405 (448)
T PRK04792 342 --------VSRLTFEGEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR--LDESPSVA----PNGT 405 (448)
T ss_pred --------EEEEecCCCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-EccCCC--CCCCceEC----CCCC
Confidence 11111122233457899999 5555544 3443 555788777643 333221 23355798 9999
Q ss_pred EEEEEecCCCe--EEEEECC
Q 039790 438 VLITGGPLNRE--LKIWASA 455 (1395)
Q Consensus 438 ~L~s~Gs~Dg~--I~IWDl~ 455 (1395)
+|+.+...++. |.+++..
T Consensus 406 ~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 406 MVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCCceEEEEEECC
Confidence 98876645544 6666763
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-08 Score=118.03 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=133.7
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~D 279 (1395)
..+.....+..+...+....|+|||++|++.+.+ ..|.+||+.++....+....+.+...+| ++||+.|+ +...+
T Consensus 186 ~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~-SpDG~~la~~~~~~ 264 (430)
T PRK00178 186 YDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAW-SPDGSKLAFVLSKD 264 (430)
T ss_pred CCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEE-CCCCCEEEEEEccC
Confidence 3444455566677788999999999999987654 3699999999876666655666678899 89998876 45555
Q ss_pred C--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccC
Q 039790 280 G--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 280 g--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~ 354 (1395)
| .|++||+.++.. ..+..+........|+|++..++.++..+ .+++++... +.
T Consensus 265 g~~~Iy~~d~~~~~~---------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~------ 322 (430)
T PRK00178 265 GNPEIYVMDLASRQL---------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR------ 322 (430)
T ss_pred CCceEEEEECCCCCe---------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC------
Confidence 5 588889987751 11222333455678999999887776432 354444321 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
...+...........|+||| ++|+..+. ++ .|.+||+.++.. ..+. +.. ......|+
T Consensus 323 --------------~~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~-~~~~p~~s-- 382 (430)
T PRK00178 323 --------------AERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTS-LDESPSVA-- 382 (430)
T ss_pred --------------EEEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-EEcc-CCC-CCCCceEC--
Confidence 11111112233457899999 56665554 33 488899988764 3333 222 33466898
Q ss_pred CCCCCcEEEEEecCCC--eEEEEECC
Q 039790 432 PHPQHIVLITGGPLNR--ELKIWASA 455 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg--~I~IWDl~ 455 (1395)
|||++|+.+...++ .|.++++.
T Consensus 383 --pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 383 --PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred --CCCCEEEEEEecCCceEEEEEECC
Confidence 99999988663443 45666664
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=123.82 Aligned_cols=252 Identities=15% Similarity=0.211 Sum_probs=165.4
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASA 276 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSg 276 (1395)
+...+..|.||...|..++--.+.+-++++++|.+|++|.++.. +..++..|+.+|.++.| -.+-+++++|
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf-L~~lr~i~Sc 802 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF-LADLRSIASC 802 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee-eeccceeeec
Confidence 34456688999999998877778888999999999999998752 56788999999999999 6777777766
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeC-CeEEEEEcCCCCccccccC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIG-NRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~ 354 (1395)
||-|.+||.--|.... .+..-..+...-...|.-. +...+++++.- .++..+|.+. ..
T Consensus 803 --D~giHlWDPFigr~La-----------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce------ 862 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLA-----------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CE------ 862 (1034)
T ss_pred --cCcceeecccccchhH-----------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc-cc------
Confidence 7899999987665211 0111111111111122222 23334444443 4444444432 21
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+.| .-.+..-.+....+.+++..+.| ++++.+-..|+|.+.|.|+|+.+..++...- ....++- |
T Consensus 863 ---~~~-----E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmec-dllqlaa-----p 927 (1034)
T KOG4190|consen 863 ---WTC-----ELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMEC-DLLQLAA-----P 927 (1034)
T ss_pred ---cee-----eEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccc-hhhhhcC-----c
Confidence 111 00011223455678999999988 8999999999999999999999998886654 4455554 6
Q ss_pred CCcEEEEEecCCCeEEE-EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 435 QHIVLITGGPLNRELKI-WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~I-WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
..+.|+.+. .|.++.+ |....+ ....+.+... +...|. ..-|.-|++....+.+.
T Consensus 928 sdq~L~~sa-ldHslaVnWhaldg------------imh~q~kppp------epahfl-----qsvgpSLV~a~~Gn~lg 983 (1034)
T KOG4190|consen 928 SDQALAQSA-LDHSLAVNWHALDG------------IMHLQDKPPP------EPAHFL-----QSVGPSLVTAQNGNILG 983 (1034)
T ss_pred hhHHHHhhc-ccceeEeeehhcCC------------eeeeccCCCC------cchhhh-----hccCceeEEeccCcEEE
Confidence 778888876 8999999 987766 3332222222 112222 23366677777777788
Q ss_pred EEE
Q 039790 514 AIH 516 (1395)
Q Consensus 514 iWd 516 (1395)
+|.
T Consensus 984 VYa 986 (1034)
T KOG4190|consen 984 VYA 986 (1034)
T ss_pred EEe
Confidence 875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.7e-07 Score=97.67 Aligned_cols=237 Identities=15% Similarity=0.188 Sum_probs=151.0
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC-c--eEEeccCCCCeEEEEEeeCCCCEEEE-EECC------CcEEEEEC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA-L--RSLLRGHTQRVTDMAFFAEDVHLLAS-ASVD------GRFFIWNI 287 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~--~~~l~~H~~~V~slaf~s~dg~~LaS-gs~D------gtV~IWdl 287 (1395)
....++|+-|...+++|..+| .|||+.+-- + ...+....-.+.-|-| ..++|+- ||.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345589999999999988766 899998752 1 1111111123444445 3344443 3333 46999994
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.... .+..+.+ ...|..|++..+ .+++...+.|.+|.....-+.
T Consensus 83 ~k~~-----------~i~el~f----~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~------------------ 126 (346)
T KOG2111|consen 83 LKER-----------CIIELSF----NSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKL------------------ 126 (346)
T ss_pred ccCc-----------EEEEEEe----ccceeeEEEcCC---eEEEEecCeEEEEEcCCChhh------------------
Confidence 3333 2333332 345667777664 456666777777755322110
Q ss_pred ceEEEcc--cCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCce--eEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 368 GVQLVGK--HDGEITELSMCQWLTTRLAS-ASLDGTVKIWDDRKSTP--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 368 ~~~~l~~--h~~~V~slafspdg~~~LaS-gs~Dg~IrIWDl~sg~~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
++.+.. ....+.+++-+... .+||. |-.-|.|+|-|+...+. -..+.+|++ .|.||+.+ -+|..|+++
T Consensus 127 -l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln----~~Gt~vATa 199 (346)
T KOG2111|consen 127 -LHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALN----LQGTLVATA 199 (346)
T ss_pred -eeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEc----CCccEEEEe
Confidence 121211 11223333322222 34444 34568999999987654 478889998 99999999 899999997
Q ss_pred ecCCCe-EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRE-LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~-I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ ..|+ |||||..+| ..++.++-.... .-..+++||+++.+|++.++.|+|.||.+....
T Consensus 200 S-tkGTLIRIFdt~~g------------~~l~E~RRG~d~-------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 200 S-TKGTLIRIFDTEDG------------TLLQELRRGVDR-------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred c-cCcEEEEEEEcCCC------------cEeeeeecCCch-------heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 6 7776 599999998 888877632221 123469999999999999999999999998644
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=115.98 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=131.7
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-C--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-G--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-g--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.|.++|.+......+..+...+.+..| ++||++|+..+.+ + .|++||+.+++. ..+ .....
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~w-SPDG~~La~~s~~~g~~~L~~~dl~tg~~------------~~l---t~~~g 262 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAW-SPDGRKLAYVSFENRKAEIFVQDIYTQVR------------EKV---TSFPG 262 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceE-CCCCCEEEEEEecCCCcEEEEEECCCCCe------------EEe---cCCCC
Confidence 677788877766667777889999999 9999988876543 2 589999987761 011 11122
Q ss_pred CccEEEEeCCCCeEEEEEeCCe---EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNR---ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~---ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
......|+|++..++.+...+. +++++... +. ...+..+.......+|+||| ++|
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~--------------------~~~lt~~~~~~~~p~wSpDG-~~I 320 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KA--------------------LTRITRHRAIDTEPSWHPDG-KSL 320 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CC--------------------eEECccCCCCccceEECCCC-CEE
Confidence 3346899999998877654333 55554421 11 23333455566788999999 555
Q ss_pred EEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCCCCCCCCCCcc
Q 039790 393 ASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg~~~~~~~~~~ 467 (1395)
+..+ .++. |.+||+.+++... +..+.. .....+|+ |||++|+.++..++. |.++|+.++
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~S----pDG~~l~~~~~~~g~~~I~~~dl~~g---------- 384 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSIT----PDGRSMIMVNRTNGKFNIARQDLETG---------- 384 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeEC----CCCCEEEEEEecCCceEEEEEECCCC----------
Confidence 4444 4444 6667887776433 222222 34567899 999999887644554 445676665
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-C--eEEEEEcC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-N--AIYAIHMD 518 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-g--~I~iWdl~ 518 (1395)
.. ..+.... . .....|++||.+|+..+.+ + .+++++++
T Consensus 385 --~~-~~lt~~~-~---------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 385 --AM-QVLTSTR-L---------DESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred --Ce-EEccCCC-C---------CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 32 2222111 1 1124789999988776543 3 36777763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-06 Score=99.51 Aligned_cols=302 Identities=14% Similarity=0.173 Sum_probs=177.9
Q ss_pred EEEEEcC----CeEEEEEC--CCCceEEec--cCCCCeEEEEEeeCCCCEEEEEEC----CCcEEEEECCCCCCCCCCcc
Q 039790 231 ICYGLKL----GNIRILNI--ITALRSLLR--GHTQRVTDMAFFAEDVHLLASASV----DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 231 LasGs~D----G~IrIWd~--~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~----DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.|++. +.|++|++ .++.+..+. .-......|++ ++++++|.++.. +|.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~-~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV-SPDGRRLYVVNEGSGDSGGVSSYRIDPDT------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE-EeCCCEEEEEEccccCCCCEEEEEECCCc-------
Confidence 4566665 79999988 445433222 23345667888 889999999887 5689999988641
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-----
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----- 372 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----- 372 (1395)
+ .+..+............+++++++.+++++.. ++.+.++.....+... .....+
T Consensus 74 --g-~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~----------------~~~~~~~~~g~ 134 (345)
T PF10282_consen 74 --G-TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG----------------EVVQTVRHEGS 134 (345)
T ss_dssp --T-EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE----------------EEEEEEESEEE
T ss_pred --c-eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc----------------eeeeecccCCC
Confidence 0 12222223223344457899999999888886 5566666654433211 001111
Q ss_pred -----cccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCc--e--eEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 373 -----GKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRKST--P--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 373 -----~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~sg~--~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
........++.|+|++ ++|++.. ....|.+|++.... . ...+....+.....+.|+ |+|+++.+.
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~----pdg~~~Yv~ 209 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS----PDGKYAYVV 209 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-----TTSSEEEEE
T ss_pred CCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc----CCcCEEEEe
Confidence 1123457899999998 5555544 45679999987654 2 234444444478999998 999999888
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~g~ 521 (1395)
+..+++|.+|++.... ..++.++++....... ........+.+++||++|.+ ....+.|.+|+++..
T Consensus 210 ~e~s~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~- 277 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSD--------GSLTEIQTISTLPEGF---TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA- 277 (345)
T ss_dssp ETTTTEEEEEEEETTT--------TEEEEEEEEESCETTS---CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-
T ss_pred cCCCCcEEEEeecccC--------CceeEEEEeeeccccc---cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-
Confidence 8889999999998321 1234455554332211 11113346899999997655 446788999999531
Q ss_pred CCCCcceeeeeeeec--cccE-EEEecCCCCcC--c-CCCCeEEEEEc--CCCceeee----cccceEEec
Q 039790 522 NPASTRMDYIAEFTV--TMPI-LSLTGTTTDAS--P-DGEHIVQIYCV--QTQAIQQY----ALDLSQCLP 580 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~--~~~i-ls~~~~~~d~~--~-s~dg~V~lWdv--~t~~i~~~----~~~~~~cl~ 580 (1395)
...+..+..+.. ..|. +.++... +.+ . ..++.|.+|++ .+|.+... .+.-..|+.
T Consensus 278 ---~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 278 ---TGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp ---TTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred ---CCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 123444444433 2222 3333232 222 1 35678998876 56766433 344455654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-08 Score=112.64 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=158.1
Q ss_pred cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEE
Q 039790 255 GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILML 332 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~ 332 (1395)
+|...-+.|.. ++||.|+ ++|..--.|++||+..- .+++..+.+..+..+..-. +-..++..
T Consensus 49 e~p~ast~ik~-s~DGqY~lAtG~YKP~ikvydlanL---------------SLKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKV-SPDGQYLLATGTYKPQIKVYDLANL---------------SLKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEe-cCCCcEEEEecccCCceEEEEcccc---------------eeeeeecccccceeEEEeccchhhheEe
Confidence 57778889999 9999975 45666778999999864 3555555555443332221 11122222
Q ss_pred EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 333 AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 333 g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
..+..|-..-- .| .+.-..-.....+++++... .-|..++....|+-+++..|+.+
T Consensus 113 ~~DR~IefHak--~G---------------------~hy~~RIP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 113 QNDRTIEFHAK--YG---------------------RHYRTRIPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL 168 (703)
T ss_pred ecCceeeehhh--cC---------------------eeeeeecCcCCccccccCCC-ccEEEeecCcceEEEEccccccc
Confidence 22221111100 00 00000112334567776554 23444445566888999999999
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc--cccccc
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR--LEDAFF 490 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~--~~~~~~ 490 (1395)
.-|....+ .+++|..+ +...+|++|+ .||.|.+||.++. ..+.++......... .....-
T Consensus 169 ~P~~~~~~-~lN~v~in----~~hgLla~Gt-~~g~VEfwDpR~k------------srv~~l~~~~~v~s~pg~~~~~s 230 (703)
T KOG2321|consen 169 NPFETDSG-ELNVVSIN----EEHGLLACGT-EDGVVEFWDPRDK------------SRVGTLDAASSVNSHPGGDAAPS 230 (703)
T ss_pred cccccccc-cceeeeec----CccceEEecc-cCceEEEecchhh------------hhheeeecccccCCCccccccCc
Confidence 99987776 89999998 7777777655 8999999999987 555666554431110 111223
Q ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCC---CcCcC-CCCeEEEEEcCCC
Q 039790 491 NQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTT---DASPD-GEHIVQIYCVQTQ 566 (1395)
Q Consensus 491 ~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~---d~~~s-~dg~V~lWdv~t~ 566 (1395)
+..+.|+.+|..++.|..+|.|+|||+.+... -.+..+....|+..+++... +.+.+ ....++|||-.+|
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~p------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKP------LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCc------eeecccCCccceeeecccccCCCceEEecchHHhhhcccccC
Confidence 45799999999999999999999999987432 13444555567878777542 11223 4577999999998
Q ss_pred ce
Q 039790 567 AI 568 (1395)
Q Consensus 567 ~i 568 (1395)
+.
T Consensus 305 k~ 306 (703)
T KOG2321|consen 305 KP 306 (703)
T ss_pred Cc
Confidence 65
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-08 Score=113.43 Aligned_cols=194 Identities=17% Similarity=0.243 Sum_probs=136.5
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEe------C-------------CCC
Q 039790 267 AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWH------P-------------HKQ 327 (1395)
Q Consensus 267 s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~s------p-------------~~~ 327 (1395)
++...+||....||.+||||...++....+. -.....+..++..|. | .+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA-----------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec-----------cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence 5667899999999999999999887322221 011111111222221 1 122
Q ss_pred eEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 328 EILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 328 ~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
..++.|. .+.+..+..... .. .....-.+|.+.|+++.++.+- ..|.|++.|+.+..|+.
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-~i-----------------t~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-EI-----------------TAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILE 131 (541)
T ss_pred eEEEeecCCccEEEEEecCC-eE-----------------EEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEec
Confidence 3444444 444444444222 11 0012235799999999999887 79999999999999999
Q ss_pred CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc
Q 039790 407 RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 407 ~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
..+..++.+++-.. .+.+++++ |||..|++++ ++|++||+.++ +.+.+|.+|.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~-~~~sl~is----~D~~~l~~as---~~ik~~~~~~k------------evv~~ftgh~s~v~t-- 189 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKP-LVSSLCIS----PDGKILLTAS---RQIKVLDIETK------------EVVITFTGHGSPVRT-- 189 (541)
T ss_pred ccceeeeeeccCCC-ccceEEEc----CCCCEEEecc---ceEEEEEccCc------------eEEEEecCCCcceEE--
Confidence 99999999998876 89999999 9999999865 89999999998 999999999988765
Q ss_pred ccccceEEEEeCC-----CCEEEEEe-CCCeEEEEEcCC
Q 039790 487 DAFFNQVVALNRA-----GLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 487 ~~~~~~~l~~S~d-----g~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
+.|-.+ |.+++++. .+..|.+|-++.
T Consensus 190 -------~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 190 -------LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -------EEEEEeccccccceeeeccccccceeEEEEEc
Confidence 555444 66666554 556678887765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-07 Score=112.61 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=134.6
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCE--E-EEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHL--L-ASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~--L-aSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+.|.+.|.+++....+..+...+.+-+| +|||+. + ++...+| .|++.++..+... .+ ..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~w-SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------~l---t~ 228 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTW-MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------KI---LA 228 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceE-ccCCCceEEEEEEccCCCceEEEEECCCCCce------------Ee---ec
Confidence 4688888888766666666667788899 999874 2 2444443 5888888877510 11 11
Q ss_pred CCCCccEEEEeCCCCeEEEEEeC-C--eEEE--EEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIG-N--RILK--IDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~-~--~ii~--~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.........|+|+|..|+.+... + .+.. |+... +.. .....+..++.+.....+|+||
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~-g~~----------------g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET-GAI----------------GKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc-CCC----------------CcceEeecCCCCCcCCeEECCC
Confidence 22333457999999988877642 1 1222 22211 100 0012233333344567899999
Q ss_pred CCcEEEEEe-CCCcEEEEe--CCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCC
Q 039790 388 LTTRLASAS-LDGTVKIWD--DRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWL 461 (1395)
Q Consensus 388 g~~~LaSgs-~Dg~IrIWD--l~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~ 461 (1395)
| +.|+..+ .+|..+||. +.. +.....+..+.+ .+....|+ |||++|+.++..+ ..|.+||+.++
T Consensus 292 G-~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wS----PDG~~Laf~~~~~g~~~I~v~dl~~g---- 361 (428)
T PRK01029 292 G-TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWS----PDGKKIAFCSVIKGVRQICVYDLATG---- 361 (428)
T ss_pred C-CEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeEC----CCCCEEEEEEcCCCCcEEEEEECCCC----
Confidence 9 5555544 567666664 432 333455555544 67889999 9999998766333 47999999877
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC---CCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---KNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---Dg~I~iWdl~~g~ 521 (1395)
++.. +...... .....|++||++|+..+. +..|++|++..++
T Consensus 362 --------~~~~-Lt~~~~~---------~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 362 --------RDYQ-LTTSPEN---------KESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------CeEE-ccCCCCC---------ccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4332 2211111 124789999998875443 3568888987653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-07 Score=112.51 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=130.4
Q ss_pred eeeeCCCCCEEEEEEecCCCE--EE-EEEcC--CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CC---
Q 039790 210 TKYISDPGLVLGRQIAVNRNY--IC-YGLKL--GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DG--- 280 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~--La-sGs~D--G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-Dg--- 280 (1395)
+.+..+...+..=.|+|||+. ++ +...+ ..|.+.++.++....+....+.....+| ++||+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w-SPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF-SPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE-CCCCCEEEEEECCCCCcc
Confidence 334444455566689999975 33 33333 4688889988876666656666778899 999998887653 22
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-Ce--EEEEEcCCCCccccccCCC
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NR--ILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~--ii~~d~~~~~~~~~~s~~~ 356 (1395)
.+.+|++..+.. +. ..++...........+|+|+|..|+.++.. +. +++++....+.
T Consensus 257 i~~~~~~~~~g~~--------g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-------- 317 (428)
T PRK01029 257 LFIQSFSLETGAI--------GK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-------- 317 (428)
T ss_pred eeEEEeecccCCC--------Cc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--------
Confidence 344477765320 00 112222222334568999999988877643 32 33333211110
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
....+..+...+....|+||| ++|+..+.+ ..|.+||+.+++... +..... .+....|+
T Consensus 318 -----------~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wS---- 379 (428)
T PRK01029 318 -----------SPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWA---- 379 (428)
T ss_pred -----------ceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEEC----
Confidence 023333445567889999999 666655443 369999999887644 332333 57889999
Q ss_pred CCCcEEEEEecC--CCeEEEEECCCC
Q 039790 434 PQHIVLITGGPL--NRELKIWASAEE 457 (1395)
Q Consensus 434 pdg~~L~s~Gs~--Dg~I~IWDl~tg 457 (1395)
|||++|+..... ...|.+||+..+
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCC
Confidence 999988765422 357888898776
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=104.27 Aligned_cols=207 Identities=17% Similarity=0.145 Sum_probs=141.4
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...++.|+..+.-++++..+|.+.+-+.... ..+.++.|.-+.+...|+..+.+++.+||.||.+..||++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 3567889999999999999999996666554 3457899999999999977778999999999999999999432
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
...|+. ...
T Consensus 200 ------------------------~~i~~n-----------------------------------------------~kv 208 (339)
T KOG0280|consen 200 ------------------------TFIWHN-----------------------------------------------SKV 208 (339)
T ss_pred ------------------------ceeeec-----------------------------------------------cee
Confidence 011111 113
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
|...|.+|.-+|..+.+|++|+.|-.|++||.|. ++++..-..- | .|+.+.+.|- -.++.|++ + .-+-.+|-+
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~--~~~~lL~~-C-Mh~G~ki~~ 282 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPE--IFHRLLAA-C-MHNGAKILD 282 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecch--hhhHHHHH-H-HhcCceEEE
Confidence 8888999999888778999999999999999995 6777654433 3 7999999822 12334554 3 344478888
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEE-EEEcCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIY-AIHMDYG 520 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~-iWdl~~g 520 (1395)
+..+.. +--..+..++.|.+..+. ..|.....+|++++ .|+.|+ +|-.-++
T Consensus 283 ~~~~~~-------e~~~~~~s~~~hdSl~YG---------~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVL-------EFQIVLPSDKIHDSLCYG---------GDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccc-------chheeeeccccccceeec---------cccccccceeeeeeccccceeeeeeeccC
Confidence 876511 000123344455443322 22222234566654 577755 7765443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=117.68 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=155.2
Q ss_pred EEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEecc--C------------CCCeEEEEEeeCCCCEEEEEE-CCCcEE
Q 039790 220 LGRQIAVN-RNYICYGLKLGNIRILNIITALRSLLRG--H------------TQRVTDMAFFAEDVHLLASAS-VDGRFF 283 (1395)
Q Consensus 220 ~~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l~~--H------------~~~V~slaf~s~dg~~LaSgs-~DgtV~ 283 (1395)
..++++++ ++++++-+.++.|++||..+.....+.+ . -..-..|+| .++++.|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav-d~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY-NAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEE-eCCCCEEEEEeCCCceEE
Confidence 46788874 5666777788999999987654443332 1 123578899 66677555544 457899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEec-------CC-------CCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILA-------DG-------DSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGK 348 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~-------~~-------~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~ 348 (1395)
++|+.++. +..+.-.+ +. -..-..++|+++++.++++..+ +.|.+|+.. .+.
T Consensus 650 ~id~~~~~------------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~ 716 (1057)
T PLN02919 650 EIDFVNET------------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGV 716 (1057)
T ss_pred EEecCCCE------------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC-CCe
Confidence 99987754 11111000 00 0122478999977677666654 555555542 222
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-------------
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL------------- 415 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl------------- 415 (1395)
...|..++.... ..+.......-...+.|+|+++|..++++-+.++.|++||+.++......
T Consensus 717 v~~~~G~G~~~~-----~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 717 TRVFSGDGYERN-----LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred EEEEecCCcccc-----CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc
Confidence 211211110000 00000000112346789999998546777777899999999876532111
Q ss_pred cCCCC-------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc-----
Q 039790 416 RPYDG-------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL----- 483 (1395)
Q Consensus 416 ~~h~~-------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~----- 483 (1395)
..+++ .....|+|+ ++|..+++- ..++.|++||..++ .+. ++-+.+....
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd----~dG~LYVAD-s~N~rIrviD~~tg------------~v~-tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCA----KDGQIYVAD-SYNHKIKKLDPATK------------RVT-TLAGTGKAGFKDGKA 853 (1057)
T ss_pred cCCCCchhhhhccCCceeeEe----CCCcEEEEE-CCCCEEEEEECCCC------------eEE-EEeccCCcCCCCCcc
Confidence 00100 134688998 899866664 48999999999876 333 2322211000
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
....-.....++++++|+++++.+.++.|++||+.++.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 00000122368999999999999999999999998754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-05 Score=90.91 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=153.5
Q ss_pred CCeEEEEECCCC--c--eEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCC--CCCCCCCcccccceEEEE
Q 039790 237 LGNIRILNIITA--L--RSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITE--GPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 237 DG~IrIWd~~~~--~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~t--g~~~~~~~~~~~~~i~~l 307 (1395)
+.-|++|++++. . ...+-.+.+.++-|+| .+++++|.++-.+ |.|-.|.++. |. +..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~-~~~~~~LY~v~~~~~~ggvaay~iD~~~G~------------Lt~l 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAV-NPDQRHLYVVNEPGEEGGVAAYRIDPDDGR------------LTFL 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEE-CCCCCEEEEEEecCCcCcEEEEEEcCCCCe------------EEEe
Confidence 467999999853 2 3344567788999999 8999888888665 6777777764 43 1111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcccCCC--------
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGE-------- 378 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~-------- 378 (1395)
.-.......-+.+++++++++++++......+.+..... +.. +.. +..+ .|.+.
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-------------~~~---v~~~-~h~g~~p~~rQ~~ 144 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-------------QPV---VQVV-KHTGSGPHERQES 144 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-------------ccc---eeee-ecCCCCCCccccC
Confidence 111112233367999999998888887766555544322 211 000 1112 24444
Q ss_pred --eEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 379 --ITELSMCQWLTTRLASASL-DGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 379 --V~slafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+....|.|++ ++|++.+. --+|.+|++..|.... ...-..+...+.|.|. |++++....+-.+++|-+|.
T Consensus 145 ~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH----pn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 145 PHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH----PNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred CccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc----CCCcEEEEEeccCCEEEEEE
Confidence 8889999998 78877764 2469999999875432 1112233468999997 99998888788999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
..... ...++++++..-... -....+...+.+++||++|.++- ..+.|.+|.+..
T Consensus 220 y~~~~--------g~~~~lQ~i~tlP~d---F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 220 YNPAV--------GKFEELQTIDTLPED---FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EcCCC--------ceEEEeeeeccCccc---cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 98741 122445544332221 12223445788999999997764 345788888865
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=128.05 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=133.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+-..|.++.=+|..-|.++|+.||.|++|....+. +..++ .-...|+.+.| +..|+.+..+..||.+.+|.+....
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f-~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF-NHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh-cccCCceeeeccCCceeecccCCcc-
Confidence 44567777777888899999999999999998873 44333 22378999999 8889999999999999999988322
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
+.....|......+.|-. ..++..|. ++.+..||....... -
T Consensus 2285 --------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-------------------s 2329 (2439)
T KOG1064|consen 2285 --------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-------------------S 2329 (2439)
T ss_pred --------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-------------------c
Confidence 222233444444455533 11222222 334444544322211 1
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
.+-..|.+.+++++|-|.. .+|++|+.+|.|++||++..+.+++|.. + ....++++ |+..|.|
T Consensus 2330 ~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~----------~-----~~~~~f~~-~ss~g~i 2392 (2439)
T KOG1064|consen 2330 LVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA----------L-----DTREYFVT-GSSEGNI 2392 (2439)
T ss_pred eeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh----------h-----hhhheeec-cCcccce
Confidence 1226799999999999998 8999999999999999999988877764 2 12345666 5699999
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
+||++...
T Consensus 2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred EEEEcccc
Confidence 99999876
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-06 Score=99.23 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=84.9
Q ss_pred ccCCCeEEEEEecCCCcEEEEE--eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--CCeE
Q 039790 374 KHDGEITELSMCQWLTTRLASA--SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--NREL 449 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSg--s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--Dg~I 449 (1395)
...+.|.+++|.|.+ +.|+++ -.+-.+-++|++.. ....+ ..+ .=..+.|+ |.+++++.+|-. -|.|
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~-~rNT~~fs----p~~r~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQ-KRNTIFFS----PHERYILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccc-eEEec--CCc-cccccccc----CcccEEEEecCCccccce
Confidence 567899999999998 555444 47889999999866 33333 233 45788999 999999998732 2689
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe------CCCeEEEEEcCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA------KKNAIYAIHMDY 519 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs------~Dg~I~iWdl~~ 519 (1395)
-|||.... ..|+..+.+.... .+.|+|||.++.+.. .|+.|.|||+..
T Consensus 343 ~i~~~~~r-----------f~~~~~~~~~n~s-----------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGR-----------FKVAGAFNGLNTS-----------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCc-----------eEEEEEeecCCce-----------EeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 99998754 2556567665432 478999999888765 478899999864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-06 Score=92.99 Aligned_cols=207 Identities=9% Similarity=0.086 Sum_probs=126.1
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-------CCCCeEEEEEeeCC-----CCEEEEEECCCcEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-------HTQRVTDMAFFAED-----VHLLASASVDGRFFIWN 286 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-------H~~~V~slaf~s~d-----g~~LaSgs~DgtV~IWd 286 (1395)
-..++||||+.+||++...|+|+|||+.+..+..+.. -...|..|.|.... ...|+.-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 4568999999999999999999999998765443332 23578888884332 23577777888888887
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+..+... .-.....+.+..+....+.+++|+|..+.++++|....-...+.
T Consensus 126 vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------------------- 176 (282)
T PF15492_consen 126 VSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------------------- 176 (282)
T ss_pred EEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-----------------------
Confidence 7543210 11233456666777888999999999987777776443100000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRL-ASASLDG------TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~L-aSgs~Dg------~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+-...+++-..-.+.+.+. ++...|+ +-.+|.+-+.+... ..+.....|..+..| |||..|
T Consensus 177 -------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlS----Pdg~~L 244 (282)
T PF15492_consen 177 -------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLS----PDGSLL 244 (282)
T ss_pred -------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEEC----CCCCEE
Confidence 0111122222211111111 1122121 12344333222221 122222389999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
++.. .+|.|.||++.+- ++.+.+..+.
T Consensus 245 a~ih-~sG~lsLW~iPsL------------~~~~~W~~~e 271 (282)
T PF15492_consen 245 ACIH-FSGSLSLWEIPSL------------RLQRSWKQDE 271 (282)
T ss_pred EEEE-cCCeEEEEecCcc------------hhhcccchhh
Confidence 9977 9999999999876 6666665443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=106.21 Aligned_cols=170 Identities=12% Similarity=0.184 Sum_probs=115.7
Q ss_pred eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 260 VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 260 V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
+..+.+ ++.+.+|+.+..+....++++..... ..+. +... ......+.+.|..+...++++-..+.++
T Consensus 65 ~~~~~~-s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl---~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~ 132 (390)
T KOG3914|consen 65 PALVLT-SDSGRLVAVATSSKQRAVFDYRENPK-------GAKL---LDVS-CVPKRPTAISFIREDTSVLVADKAGDVY 132 (390)
T ss_pred cccccc-CCCceEEEEEeCCCceEEEEEecCCC-------ccee---eeEe-ecccCcceeeeeeccceEEEEeecCCce
Confidence 444555 67788888888888877777776541 0111 1111 1122233555555565666665555555
Q ss_pred EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CC
Q 039790 340 KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PY 418 (1395)
Q Consensus 340 ~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h 418 (1395)
.++.....++ ....+-||-..+++|+|+||+ .+|+++..|..|||-....-..+..|- ||
T Consensus 133 ~~di~s~~~~------------------~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH 193 (390)
T KOG3914|consen 133 SFDILSADSG------------------RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGH 193 (390)
T ss_pred eeeeeccccc------------------CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcccc
Confidence 5555332211 134456899999999999999 899999999999998776655555544 79
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.. .|..++.. +++.|+++| .|++|++||+.+| +++.++....
T Consensus 194 ~e-FVS~isl~-----~~~~LlS~s-GD~tlr~Wd~~sg------------k~L~t~dl~s 235 (390)
T KOG3914|consen 194 KE-FVSTISLT-----DNYLLLSGS-GDKTLRLWDITSG------------KLLDTCDLSS 235 (390)
T ss_pred Hh-heeeeeec-----cCceeeecC-CCCcEEEEecccC------------CcccccchhH
Confidence 87 99999995 667788866 9999999999999 7777766543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=98.51 Aligned_cols=268 Identities=15% Similarity=0.202 Sum_probs=168.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--Cc----eEEeccCC------------CCeEEEEEeeCCC-CEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--AL----RSLLRGHT------------QRVTDMAFFAEDV-HLLAS 275 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~~----~~~l~~H~------------~~V~slaf~s~dg-~~LaS 275 (1395)
..+.|++|.|...|.||++|.+.|.|.+|.-.. +| ...|++|. ..|..|.|+.+.+ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346789999999999999999999999997654 23 23456664 3688899965443 35666
Q ss_pred EECCCcEEEEECCCCCCCC--------C----------------Ccccc--cceEE--EEEEe-cCCCCCccEEEEeCCC
Q 039790 276 ASVDGRFFIWNITEGPDEE--------D----------------KPQIL--GKIVV--AIQIL-ADGDSVHPRVCWHPHK 326 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~--------~----------------~~~~~--~~~i~--~l~~~-~~~~~~v~~v~~sp~~ 326 (1395)
.+.|.+|++|.+....... . .++.. ...+. ..+++ ..|...+.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999998652100 0 00000 01111 11122 3455566677787776
Q ss_pred CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-----CCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 327 QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-----GEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 327 ~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-----~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
. .+.++.+-.|..|........ | . +.-++.|. .-|++..|+|..-+.|.-.+..|.|
T Consensus 185 e-t~lSaDdLrINLWnl~i~D~s--F------n---------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 185 E-TLLSADDLRINLWNLEIIDGS--F------N---------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred h-eeeeccceeeeeccccccCCc--e------E---------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 5 444555555666654322110 0 0 22223333 4588899999876778888889999
Q ss_pred EEEeCCCCcee----E----EecC--------CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 402 KIWDDRKSTPL----A----VLRP--------YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 402 rIWDl~sg~~l----~----tl~~--------h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++-|+|..... . ++.+ -.. .|..+.|+ ++|+++++- .--+|+|||++..
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs----~ngryIlsR--dyltvkiwDvnm~-------- 311 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFS----DNGRYILSR--DYLTVKIWDVNMA-------- 311 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhh-hhcceEEc----CCCcEEEEe--ccceEEEEecccc--------
Confidence 99999953211 1 1111 112 68889999 999999872 4679999999865
Q ss_pred cccccEEEEEeccCcccccc-----ccccc-ceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 466 IESWKCTQTLELKSSAELRL-----EDAFF-NQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~-----~~~~~-~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..|+.++..|....... .++.| .--+.||.|...+++|+..+..-|+-..
T Consensus 312 ---k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 312 ---KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ---cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 26788887665321110 11111 2247789999999999988877776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=93.24 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=127.3
Q ss_pred CCeEEEEECCCCce----EEeccCCCCeEEEEEee--CCCC-EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 237 LGNIRILNIITALR----SLLRGHTQRVTDMAFFA--EDVH-LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 237 DG~IrIWd~~~~~~----~~l~~H~~~V~slaf~s--~dg~-~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
-|.+.+|++..-.. .....-+..++.|.|.. .+|. .|+-+-.+|.|.++..........+.......+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence 46788898876421 12223345688888832 3455 566777789999998775442111111111100
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
.....-++.|++.+..++++-..+.+..++.... ....++..+.|.-.++...|+...+
T Consensus 120 ---~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~------------------~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 120 ---SVVEALSLDISTSGTKIFVSDSRGSISGVYETEM------------------VLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred ---hheeeeEEEeeccCceEEEEcCCCcEEEEeccee------------------eeeecccccccceeeeeeecccCCC
Confidence 0012336788888888888877777765544221 1122456778999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCC-CCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDR-KSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~-sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+++.+|+.|+.+..||+| .++.+.. .+-|.. .|.++.-++ |.+.+|++ |+.|-.|++||.++-
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~---~~~~~I~T-GsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSP---PKPTYIAT-GSYDECIRVLDTRNM 243 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCC---CCCceEEE-eccccceeeeehhcc
Confidence 999999999999999999 3455554 456765 899999883 56667777 569999999999854
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=121.34 Aligned_cols=206 Identities=15% Similarity=0.198 Sum_probs=150.1
Q ss_pred cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 236 KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.++...-|..+.+-+ .++.|-..|.++.= .+...+.+||+.||.|++|....+. .+.+.+..+. .
T Consensus 2188 ~~~~~~tq~~~~~~~-~~k~~v~~v~r~~s-Hp~~~~Yltgs~dgsv~~~~w~~~~-----------~v~~~rt~g~--s 2252 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASV-MIKHPVENVRRMTS-HPSDPYYLTGSQDGSVRMFEWGHGQ-----------QVVCFRTAGN--S 2252 (2439)
T ss_pred CCccccceeccccee-EeecccCceeeecC-CCCCceEEecCCCceEEEEeccCCC-----------eEEEeeccCc--c
Confidence 344444454443322 23334556777776 5666788999999999999988766 4455555544 7
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.++++.|+..|+.+-++-.+|.+-.|-... +++.....|.....++.|-. ..++++
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---------------------k~~~s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQASP---------------------KPYTSWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccCC---------------------cceeccccCCccccceeeee---hhhhcc
Confidence 888999999998887777777777775531 11334456999999999975 467766
Q ss_pred e---CCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 396 S---LDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 396 s---~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
+ .++.+.+||.-.. .+++ ..|.+ .+++++|. |..+.|++|| .+|.|+|||++..
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~----P~~qllisgg-r~G~v~l~D~rqr------------ 2368 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYA----PKHQLLISGG-RKGEVCLFDIRQR------------ 2368 (2439)
T ss_pred ccCCCCCcccchhcccCcccceee--eecCC-CceEEEEc----CcceEEEecC-CcCcEEEeehHHH------------
Confidence 5 4688999996432 3444 77887 99999999 9999999977 9999999999876
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+++|.. +. ...++++|+..|.|+||++..
T Consensus 2369 ql~h~~~~------------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2369 QLRHTFQA------------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred HHHHHhhh------------------hh-hhheeeccCcccceEEEEccc
Confidence 66555543 11 456889999999999999875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=107.59 Aligned_cols=225 Identities=10% Similarity=0.096 Sum_probs=136.0
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccC-----------------CCCeEEEEEeeC-CCCEEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGH-----------------TQRVTDMAFFAE-DVHLLASAS 277 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H-----------------~~~V~slaf~s~-dg~~LaSgs 277 (1395)
..-.+++|.++++.|+++ ..++.|+++|..++.+.++.+- -..-++|+| .+ ++.++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~-dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF-EPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE-ecCCCeEEEEEC
Confidence 345788999988876665 4567899999988876665331 012367999 55 677888888
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEec-----CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCcccc
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-----DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGER 351 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-----~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~ 351 (1395)
.++.|++||..++.... ..+.- ......+ ..-.....++|+++++.++++..+ +.|.+|+....+. ..
T Consensus 703 ~~~~I~v~d~~~g~v~~----~~G~G-~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~ 776 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRV----FSGDG-YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RL 776 (1057)
T ss_pred CCCeEEEEECCCCeEEE----EecCC-ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EE
Confidence 89999999998765100 00000 0000000 011234569999999877777665 5666666543211 00
Q ss_pred ccCCCCC----ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-C---------
Q 039790 352 FSAEEPL----KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-P--------- 417 (1395)
Q Consensus 352 ~s~~~~~----~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~--------- 417 (1395)
+...... ...++.. .+... ...-.....++|+++| .++++-+.+++|++||..++....... +
T Consensus 777 ~~gg~~~~~~~l~~fG~~-dG~g~-~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDH-DGVGS-EVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCcccccccCC-CCchh-hhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 0000000 0000000 00000 0011234688999998 788888899999999998876543321 1
Q ss_pred ---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 418 ---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 418 ---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.-. ....|+++ ++|+.+++- ..++.|++||+.++
T Consensus 854 ~~a~l~-~P~GIavd----~dG~lyVaD-t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLS-EPAGLALG----ENGRLFVAD-TNNSLIRYLDLNKG 890 (1057)
T ss_pred cccccC-CceEEEEe----CCCCEEEEE-CCCCEEEEEECCCC
Confidence 111 57789998 899877764 48999999999887
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-06 Score=97.91 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=139.6
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEEC-----------CCcEEEEEC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASV-----------DGRFFIWNI 287 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-----------DgtV~IWdl 287 (1395)
+-+.|||.|.||++-..-| |.+|--..- .++.| .|. .|.-+.| +|+.+||+|-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idf-SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDF-SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-Cceeeec-CCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4577999999999987755 779965543 23333 365 4888999 999999999653 256999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC---------------------
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV--------------------- 346 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~--------------------- 346 (1395)
.+|.....++.+. .......-+.|+.++.++... ..+.|.+++....
T Consensus 290 ~tG~lkrsF~~~~-----------~~~~~WP~frWS~DdKy~Arm-~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 290 ATGLLKRSFPVIK-----------SPYLKWPIFRWSHDDKYFARM-TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred cccchhcceeccC-----------CCccccceEEeccCCceeEEe-ccceEEEEecCceeeecccccCCccccCcccCCC
Confidence 9998655554321 112222334455444322222 2233333322110
Q ss_pred -----------Cc---------------------------cccccCCCCCccCc----ccc-ccc----eEEEc------
Q 039790 347 -----------GK---------------------------GERFSAEEPLKCPV----DEL-ING----VQLVG------ 373 (1395)
Q Consensus 347 -----------~~---------------------------~~~~s~~~~~~~~~----~~~-~~~----~~~l~------ 373 (1395)
.. ...|...+.+.|.. -+. ..+ +.++.
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 00 00111111222200 000 000 01110
Q ss_pred -----ccCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC-C---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 374 -----KHDGEITELSMCQWLTTRLASASL---DGTVKIWDDRK-S---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 374 -----~h~~~V~slafspdg~~~LaSgs~---Dg~IrIWDl~s-g---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
.-...|..++|-|.| ..+++-+. ..++.+|-+.+ . +.+..|.. . ..+.|.|+ |.|++++.
T Consensus 438 pve~velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~-~~N~vfws----PkG~fvvv 509 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--K-FANTVFWS----PKGRFVVV 509 (698)
T ss_pred CceeeecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--c-ccceEEEc----CCCcEEEE
Confidence 134567789999998 55555443 35799998873 2 34455543 2 67999999 99999887
Q ss_pred Ee--cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 442 GG--PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 442 ~G--s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
++ |..|.+.++|+... .+..+-.. ..+.-.-+.|.|.|+|+++++.
T Consensus 510 a~l~s~~g~l~F~D~~~a------------~~k~~~~~---------eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYA------------DLKDTASP---------EHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EEecccccceEEEecchh------------hhhhccCc---------cccccccceECCCCCEEEEeee
Confidence 65 35789999998743 22221111 1111224889999999999875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=103.63 Aligned_cols=162 Identities=16% Similarity=0.074 Sum_probs=111.6
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCce----EEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALR----SLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~----~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+..+.+++++++||++..+....++++..... .....-..+-+.+.|...+ .......+....+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34456788899999998888877877766432 1111122233344442222 22233345555666666665442
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...-+|-..++.|+|++|+++|+.+-.++.|.+.|....... -...
T Consensus 145 ---------------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-------------------esfc 190 (390)
T KOG3914|consen 145 ---------------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-------------------ESFC 190 (390)
T ss_pred ---------------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-------------------hhhc
Confidence 233467778899999999999999999999988887554332 2234
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
-||+..|..++.-++ ..|++||.|++|++||+++|++++++.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 579999999999875 579999999999999999999997765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.9e-06 Score=92.70 Aligned_cols=237 Identities=12% Similarity=0.171 Sum_probs=140.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC------------CCCCccEEEEe
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD------------GDSVHPRVCWH 323 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~------------~~~~v~~v~~s 323 (1395)
..+-|.+|.| ...|.+|++|+.+|+|.++.-..... ..+ .....+.. .+..+..+.|.
T Consensus 24 eadiis~vef-~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey--------~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 24 EADIISAVEF-DHYGERLATGDKGGRVVLFEREKLYK-GEY--------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred hhcceeeEEe-ecccceEeecCCCCeEEEeecccccc-cce--------eeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 3456889999 89999999999999999997554321 000 01111111 23456789999
Q ss_pred CCCC--eEEEEEeCCeEEEEEcCCCCccc-cccCC--C------CCc------cCccccccceEEE-cccCCCeEEEEEe
Q 039790 324 PHKQ--EILMLAIGNRILKIDSNRVGKGE-RFSAE--E------PLK------CPVDELINGVQLV-GKHDGEITELSMC 385 (1395)
Q Consensus 324 p~~~--~lla~g~~~~ii~~d~~~~~~~~-~~s~~--~------~~~------~~~~~~~~~~~~l-~~h~~~V~slafs 385 (1395)
++++ .++.++.+..+..|-....+... .+... . .++ +...-...+.+++ .+|...|++++++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 8776 67778888888888665433211 11110 0 001 1111111222333 4689999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.|. ..++++ .|=+|.+|++.--. -+.-++.+.- .-|++..|+ |....++.-++..|+|+|-|++..-
T Consensus 174 sD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFh----p~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 174 SDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFH----PHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred Ccc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccC----HhHccEEEEecCCCcEEEeechhhh
Confidence 998 566665 57889999986432 2233444431 157888897 6655444445689999999998430
Q ss_pred CCCCCCCcccccEEEEEeccCccccccccccc------ceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFF------NQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~------~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
-+. .....|....... ...|| +.-+.|+.+|+++++-.. .+|++||++..
T Consensus 248 LCd--------~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 248 LCD--------AHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hhc--------chhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence 000 0001111111111 11122 235889999999998653 68999999653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00021 Score=81.29 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=159.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCC--CceEEecc---CCCCeEEEEEeeCCCCEEEEEEC-CCcEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLK---LGNIRILNIIT--ALRSLLRG---HTQRVTDMAFFAEDVHLLASASV-DGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~--~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~-DgtV~IW 285 (1395)
+.+..+-++|++++++|.++-. +|.|-.|.++. |.+..+.. -...-+.+++ +++|++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv-d~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV-DEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE-CCCCCEEEEEEccCceEEEE
Confidence 4567788899999999988855 47787777765 54433221 1223378888 899998888865 4789999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~ 355 (1395)
-+..... +...+....+.. ..+....+.|++++++++..+ ++++.++.. .+.-..
T Consensus 117 p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~---- 181 (346)
T COG2706 117 PLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTP---- 181 (346)
T ss_pred EcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCcccc----
Confidence 9976321 111222222211 115578899999988888764 777777765 221100
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEec-----CCCCCCeeEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----TPLAVLR-----PYDGHPVNCV 426 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~-----~h~~~~V~sV 426 (1395)
.. ...+ .-...-..|.|+|++....+.+-.+++|-+|..... ++++++. -....+...|
T Consensus 182 ----------~~-~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 182 ----------AD-PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred ----------cc-cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 00 1111 344567889999999433444556999999998763 2333322 1112367888
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
..+ +||++|.++......|-+|.+....+ ....+.....+.. +-+...|+++|++|++.
T Consensus 250 his----~dGrFLYasNRg~dsI~~f~V~~~~g--------~L~~~~~~~teg~---------~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 250 HIS----PDGRFLYASNRGHDSIAVFSVDPDGG--------KLELVGITPTEGQ---------FPRDFNINPSGRFLIAA 308 (346)
T ss_pred EEC----CCCCEEEEecCCCCeEEEEEEcCCCC--------EEEEEEEeccCCc---------CCccceeCCCCCEEEEE
Confidence 898 99999999765666888887764311 0112222222221 12347788999988877
Q ss_pred e-CCCeEEEEEcCC
Q 039790 507 A-KKNAIYAIHMDY 519 (1395)
Q Consensus 507 s-~Dg~I~iWdl~~ 519 (1395)
. ++..|.+|.++.
T Consensus 309 ~q~sd~i~vf~~d~ 322 (346)
T COG2706 309 NQKSDNITVFERDK 322 (346)
T ss_pred ccCCCcEEEEEEcC
Confidence 6 445688888765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-06 Score=88.45 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=128.0
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
...+||.|+.-|...+|...+.. .+....|...|.-+.=.......+..++.|.++++.++.-+.. +..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~--------~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN--------KFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc--------ccee
Confidence 34589999999999999998764 3334444443322111011223466788899999998876541 1110
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
....-.+..+.+++++....++|....+.++.....+.. .. ........+.-.+..|
T Consensus 155 ------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------------~~--~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 155 ------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------------IE--NIYEAPTSDHGFYNSF 211 (344)
T ss_pred ------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------ee--eeEecccCCCceeeee
Confidence 011122568899999999999999999988876543321 00 0123345566688999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCce-eEE----ecCCCCCCeeEEEEeecCCCCCc--EEEEEecCCCeEEEEECCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTP-LAV----LRPYDGHPVNCVTFLIGPHPQHI--VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~-l~t----l~~h~~~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+..+ ..+|++..||++.|||+|.... ..+ -..|.| .+..+.|+ +.|. +|+.+- .=+.+.+.|++++
T Consensus 212 s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fs----l~g~lDLLf~sE-hfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 212 SEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFS----LYGLLDLLFISE-HFSRVHVVDTRNY 284 (344)
T ss_pred ccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEec----CCCcceEEEEec-CcceEEEEEcccC
Confidence 9887 7999999999999999997532 222 224666 99999999 5543 344433 5678999999998
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-06 Score=98.58 Aligned_cols=231 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred cceeeeeCCCCCEEEEEEecCC------------CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEee--CCC-
Q 039790 207 TPITKYISDPGLVLGRQIAVNR------------NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFA--EDV- 270 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg------------~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s--~dg- 270 (1395)
+.|..+.-|...|+.+.|+|-. -+||++...|.|.|||...+. +..+..|.+.|.+++|-. .+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 5667778899999999998721 257888889999999999884 557778889999999942 233
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCcc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
.+|+.-....+|.+|+..+|.... ..........|+.+.|-+ .++.+.|..|.+...+.......
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~W--------------k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFW--------------KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceee--------------ccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 466666777899999999998221 112223334456777744 46667777777777766543221
Q ss_pred ----ccccCCCCC--ccCccc-cccceEEEccc--CC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC
Q 039790 350 ----ERFSAEEPL--KCPVDE-LINGVQLVGKH--DG---EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 350 ----~~~s~~~~~--~~~~~~-~~~~~~~l~~h--~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
..|....+. ..+... ...+....... .. ..-.++|+|.- +-++-...-..+.|+|++-..++.+..-
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpi 270 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPI 270 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEe
Confidence 111000000 000000 00000000000 00 12246778765 3333344677899999999999998877
Q ss_pred CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 418 YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 418 h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+ .+.-|.|.|. |....|++.- .||.+.||--+.
T Consensus 271 er~-~akfv~vlP~--~~rd~LfclH-~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 271 ERG-GAKFVDVLPD--PRRDALFCLH-SNGRLTIRVRKE 305 (1062)
T ss_pred ccC-CcceeEeccC--CCcceEEEEe-cCCeEEEEEeec
Confidence 766 7888888833 3344566654 999999997654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=103.44 Aligned_cols=90 Identities=17% Similarity=0.243 Sum_probs=68.7
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce---eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP---LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~---l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
|+..|+++..-.....+|.+.+.+|+|++||.|--++ ++++.||.+ .-.-+-+. .++....++++| +|...||
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN-~~a~l~~~--v~~eeg~I~s~G-dDcytRi 372 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN-LSAYLPAH--VKEEEGSIFSVG-DDCYTRI 372 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc-cccccccc--cccccceEEEcc-CeeEEEE
Confidence 8888998877663337899999999999999998777 999999965 22222221 125666788877 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
|.++.+ .++.++.....
T Consensus 373 Wsl~~g------------hLl~tipf~~s 389 (425)
T KOG2695|consen 373 WSLDSG------------HLLCTIPFPYS 389 (425)
T ss_pred EecccC------------ceeeccCCCCc
Confidence 999998 88888776553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-05 Score=93.02 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=147.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcC--CCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKV--PKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~s--p~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
.+|-.....++.|+.||.+++..+.. +|++.- | +.+.-....-.++.||.+.|.-+.|+.+..
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------------g-laa~snLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------------G-LAAASNLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCccccc--------------c-cccccccchhhhhccCcceEEEEEeccccc
Confidence 45555568899999999998887432 221111 1 000011122357889999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.|-+...+|.|.||-+..|. ...-......|.+|+| ..+|..|+....||.|.|=.++... +. ++-
T Consensus 85 KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdGNR-Iw------gKe--- 153 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDGNR-IW------GKE--- 153 (1189)
T ss_pred cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeeccce-ec------chh---
Confidence 99999999999999998872 2223335567999999 8899999999999998877766433 10 000
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-----------ccccC--------------------C
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-----------ERFSA--------------------E 355 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-----------~~~s~--------------------~ 355 (1395)
+. ......+.|+++...+++.-..+.++++|....... ..|+. +
T Consensus 154 --Lk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 154 --LK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred --cc---hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 00 011124667776665555555555555544321100 00000 0
Q ss_pred CCC--ccC------c---cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---------cEEEEeCCCCceeEEe
Q 039790 356 EPL--KCP------V---DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---------TVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 356 ~~~--~~~------~---~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---------~IrIWDl~sg~~l~tl 415 (1395)
.+. .|. + .....++ +....-.|....|+++| ..|+.++.|. .|.+|. .-|..+.++
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pv--v~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl 304 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPV--VVDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL 304 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCe--EEecccEeecceecCCC-cEEEEccCcccccCccccceEEEec-cchhheEEE
Confidence 000 000 0 0000111 11123467889999999 7899888642 466664 457888888
Q ss_pred cCCCCCCeeEEEEe
Q 039790 416 RPYDGHPVNCVTFL 429 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs 429 (1395)
+.... .|++++|-
T Consensus 305 kvpg~-~It~lsWE 317 (1189)
T KOG2041|consen 305 KVPGS-CITGLSWE 317 (1189)
T ss_pred ecCCc-eeeeeEEc
Confidence 87766 89999996
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-05 Score=92.79 Aligned_cols=301 Identities=10% Similarity=0.071 Sum_probs=163.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--------------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-------------- 280 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-------------- 280 (1395)
..-.+..+.|||.|+||++.... .|.+|+-..+......-|. .|..+.| +|+++||++=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~-~V~~~~f-SP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHP-DVKYLDF-SPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecC-Cceeccc-CcccceeeeeccCCccChhhccCCcccc
Confidence 44567788899999999998764 5889987776422222244 5999999 99999999976543
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC-Ccc---------
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV-GKG--------- 349 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~-~~~--------- 349 (1395)
.+++||+.+|..+. .+...........-+.|+-++.+.+-. .++.++++..... ...
T Consensus 108 n~~~vwd~~sg~iv~-----------sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~g 175 (561)
T COG5354 108 NNVFVWDIASGMIVF-----------SFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVG 175 (561)
T ss_pred CceeEEeccCceeEe-----------eccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccc
Confidence 49999999987322 222222111122246666666543333 4455555553111 110
Q ss_pred -c--cccCCC-CCccCccccc---cc--eEEEcccCC-----------CeEEEEEecCCCcEEEEEe-----------CC
Q 039790 350 -E--RFSAEE-PLKCPVDELI---NG--VQLVGKHDG-----------EITELSMCQWLTTRLASAS-----------LD 398 (1395)
Q Consensus 350 -~--~~s~~~-~~~~~~~~~~---~~--~~~l~~h~~-----------~V~slafspdg~~~LaSgs-----------~D 398 (1395)
. .|++.+ .-.+..|... ++ +.++.-... .-..+.|.+.| ++|+.-- ..
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeeecccceecc
Confidence 0 011110 0000011111 11 111110011 11245666666 3333211 12
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE-EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT-GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 399 g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s-~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
..+.|++++...+ .....-.+ +|...+|. |+++.+++ .|-.+..+.++|++.. .. +.+
T Consensus 255 snLyl~~~~e~~i-~V~~~~~~-pVhdf~W~----p~S~~F~vi~g~~pa~~s~~~lr~N-------------l~--~~~ 313 (561)
T COG5354 255 SNLYLLRITERSI-PVEKDLKD-PVHDFTWE----PLSSRFAVISGYMPASVSVFDLRGN-------------LR--FYF 313 (561)
T ss_pred ceEEEEeeccccc-ceeccccc-cceeeeec----ccCCceeEEecccccceeecccccc-------------eE--Eec
Confidence 3466677664332 22223345 89999998 76665544 3457889999999764 22 222
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCCCCCCCCcceeeeeeeeccccEEE-E--ecCCCCc-
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS-L--TGTTTDA- 550 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils-~--~~~~~d~- 550 (1395)
....-. .+.|+|.+++++.++-| |.|-+||... ++..+..|.+....++ | ++...+.
T Consensus 314 Pe~~rN---------T~~fsp~~r~il~agF~nl~gni~i~~~~~-------rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 314 PEQKRN---------TIFFSPHERYILFAGFDNLQGNIEIFDPAG-------RFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred CCcccc---------cccccCcccEEEEecCCccccceEEeccCC-------ceEEEEEeecCCceEeeccCCceEEEec
Confidence 222211 38889999999987755 5689998643 5666666655533221 1 1111000
Q ss_pred -C---cCCCCeEEEEEcCCCce
Q 039790 551 -S---PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 551 -~---~s~dg~V~lWdv~t~~i 568 (1395)
. --.|..|+||++....+
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCCcccccCcceEEEEecCchh
Confidence 0 13578899999987654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=92.79 Aligned_cols=254 Identities=9% Similarity=0.114 Sum_probs=165.3
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC-CceE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT-ALRS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~-~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
...+..++||.+.|+....-+...-+.+.+.|.++|||--.+ ++.. ....-...++++.| ..+...|+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y-~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY-VSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee-eccceEEEEEEecceE
Confidence 355678899999999988888888899999999999996544 3322 11223457889999 7788899999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.-+.+...-. .....+....|...+..+.|+-....++..|.+..+. |-....+.+.
T Consensus 93 tefs~sedfn----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~l------------ 149 (404)
T KOG1409|consen 93 TEFALSEDFN----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRL------------ 149 (404)
T ss_pred EEEEhhhhhh----------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcc------------
Confidence 9887764320 0112344556777788888888777777777766654 3322222110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe--CCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD--DRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD--l~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.++.....- +++.|.- .+...|...|.|.+-. ...-.++.++.+|.+ .+++++|. +..+.|+
T Consensus 150 ----g~Y~~~~~~----t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~Wd----~~~~~Lf 213 (404)
T KOG1409|consen 150 ----GGYNFETPA----SALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLKWD----PGQRLLF 213 (404)
T ss_pred ----cceEeeccC----CCCceee---EEEEecccccceEEEEEeecCCceEEEEcCccc-ceEEEEEc----CCCcEEE
Confidence 000000000 0011100 0222333334333322 233467889999998 99999998 7777888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++. .|..|.+||+-... -....+.+|.+.+.. +++-.--+.|++++.||.|-+|+.+..
T Consensus 214 Sg~-~d~~vi~wdigg~~-----------g~~~el~gh~~kV~~---------l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 214 SGA-SDHSVIMWDIGGRK-----------GTAYELQGHNDKVQA---------LSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ecc-ccCceEEEeccCCc-----------ceeeeeccchhhhhh---------hhhhhhheeeeeccCCCeEEEEeccce
Confidence 755 99999999997651 223455667666543 555566788999999999999998753
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-05 Score=91.20 Aligned_cols=291 Identities=14% Similarity=0.113 Sum_probs=156.7
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEE-----ECC-----CcEEEEEC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASA-----SVD-----GRFFIWNI 287 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSg-----s~D-----gtV~IWdl 287 (1395)
+...+++++|+++|++. ++.|+|++...+. +.+... ..++++.| ++.|.+|.+= ..| -.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~f-SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLF-SPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeee-cccccccccccccccccCCCCCCCceeeeee
Confidence 56667999999999875 4789999998874 333322 27999999 8999988752 122 34779999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc---------c--ccccCC-
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK---------G--ERFSAE- 355 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~---------~--~~~s~~- 355 (1395)
.++...- .+....... .+..|+.+.. +++--.++.+..++...... . ..+++.
T Consensus 113 et~~~~s-------------~~q~k~Q~~-W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 113 ETGVQRS-------------QIQKKMQNG-WVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP 177 (566)
T ss_pred ccceehh-------------heehhhhcC-cccccccchh-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence 8843110 000000111 2344444432 22212222333333222100 0 001111
Q ss_pred --------------CCCccCccccccc-------eEEEcccCCCeEEEEEecCCCcEEEEEeC--CC---------cEEE
Q 039790 356 --------------EPLKCPVDELING-------VQLVGKHDGEITELSMCQWLTTRLASASL--DG---------TVKI 403 (1395)
Q Consensus 356 --------------~~~~~~~~~~~~~-------~~~l~~h~~~V~slafspdg~~~LaSgs~--Dg---------~IrI 403 (1395)
.+..|+++..... .+.|. ...=..+.|++-|..+|+.++. |. ++++
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 1112222221100 11111 1122357777776445444433 33 5777
Q ss_pred EeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE-EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc
Q 039790 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT-GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 404 WDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s-~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i 482 (1395)
.++....+...+.. .| +|+++.|+ ++|+-+++ -|-.-..+.|||++. .-.++...+.-
T Consensus 256 l~t~g~s~~V~L~k-~G-PVhdv~W~----~s~~EF~VvyGfMPAkvtifnlr~---------------~~v~df~egpR 314 (566)
T KOG2315|consen 256 LATQGESVSVPLLK-EG-PVHDVTWS----PSGREFAVVYGFMPAKVTIFNLRG---------------KPVFDFPEGPR 314 (566)
T ss_pred EEecCceEEEecCC-CC-CceEEEEC----CCCCEEEEEEecccceEEEEcCCC---------------CEeEeCCCCCc
Confidence 77774455555543 34 99999999 88875544 465677899999854 33444444432
Q ss_pred ccccccccceEEEEeCCCCEEEEEeC---CCeEEEEEcCCCCCCCCcceeeeeeeeccc---------cEEEEecCCCCc
Q 039790 483 LRLEDAFFNQVVALNRAGLFLLANAK---KNAIYAIHMDYGPNPASTRMDYIAEFTVTM---------PILSLTGTTTDA 550 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~dg~~LaSgs~---Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~---------~ils~~~~~~d~ 550 (1395)
. .+.|+|.|++|+-+|- .|.|-|||+..-+ .|..|.... .-+.++.+. ..
T Consensus 315 N---------~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------~i~~~~a~~tt~~eW~PdGe~flTATT-aP 376 (566)
T KOG2315|consen 315 N---------TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------LIAKFKAANTTVFEWSPDGEYFLTATT-AP 376 (566)
T ss_pred c---------ceEECCCCCEEEEeecCCCCCceEEEeccchh--------hccccccCCceEEEEcCCCcEEEEEec-cc
Confidence 2 4899999999988875 4679999997632 333333321 112222221 00
Q ss_pred CcCCCCeEEEEEcCCCcee
Q 039790 551 SPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 551 ~~s~dg~V~lWdv~t~~i~ 569 (1395)
.---|..++||+.....+.
T Consensus 377 RlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cEEecCCeEEEEecCceee
Confidence 0124677999998776554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00013 Score=96.80 Aligned_cols=255 Identities=15% Similarity=0.184 Sum_probs=163.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEE----ECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC--
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRIL----NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT-- 288 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIW----d~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~-- 288 (1395)
..+.|.++.|-++...|+.+..+|.|.++ +...........-...|.+++| +||+.+|+....+|+|.+-+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~W-SPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASW-SPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEE-CCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999999 6666655555556778999999 9999999999999988775321
Q ss_pred --CCCCCCC--C----c----------ccccceEEE---------E-----EEecCCCCCccEEEEeCCCCeEEEEEe--
Q 039790 289 --EGPDEED--K----P----------QILGKIVVA---------I-----QILADGDSVHPRVCWHPHKQEILMLAI-- 334 (1395)
Q Consensus 289 --tg~~~~~--~----~----------~~~~~~i~~---------l-----~~~~~~~~~v~~v~~sp~~~~lla~g~-- 334 (1395)
....... + . ++.|..-.. + .... .+..-..|+|..||.+++++..
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 1100000 0 0 001100000 0 0111 3345568999999988777765
Q ss_pred -CC--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC
Q 039790 335 -GN--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL---DGTVKIWDDRK 408 (1395)
Q Consensus 335 -~~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~---Dg~IrIWDl~s 408 (1395)
.+ ..+++|.+. |.- ..+-..-.+--.+++|.|.| ++||+.-. ...|.+|. |+
T Consensus 232 ~~~~~R~iRVy~Re-G~L-------------------~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfE-rN 289 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GEL-------------------QSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFE-RN 289 (928)
T ss_pred CCCceeEEEEECCC-ceE-------------------EeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEe-cC
Confidence 23 666777654 110 01111122233578999999 89988765 34577776 66
Q ss_pred CceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 409 STPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 409 g~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
|-.-..|.- +....|..+.|+ .|+..|+..- .| .|.+|-..+. .|-+.+.+.........
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn----~ds~iLAv~~-~~-~vqLWt~~NY----------HWYLKqei~~~~~~~~~- 352 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWN----SDSEILAVWL-ED-RVQLWTRSNY----------HWYLKQEIRFSSSESVN- 352 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEEC----CCCCEEEEEe-cC-CceEEEeeCC----------EEEEEEEEEccCCCCCC-
Confidence 654444432 233489999999 9999999865 44 4999998764 56677777765432111
Q ss_pred cccccceEEEEeC-CCCEEEEEeCCCeEEEEEc
Q 039790 486 EDAFFNQVVALNR-AGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 486 ~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+.|++ +...|...+.+|.+..+++
T Consensus 353 -------~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 353 -------FVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred -------ceEECCCCCCEEEEEecCCcEEEEEE
Confidence 266665 4556666776677765554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.2e-07 Score=104.44 Aligned_cols=180 Identities=20% Similarity=0.343 Sum_probs=125.6
Q ss_pred eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 250 ~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
+..|.||...|..++- -.+.+-+++++.|++|++|.++.... ..-++.
T Consensus 728 L~nf~GH~~~iRai~A-idNENSFiSASkDKTVKLWSik~EgD----------------------~~~tsa--------- 775 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAA-IDNENSFISASKDKTVKLWSIKPEGD----------------------EIGTSA--------- 775 (1034)
T ss_pred eecccCcHHHhHHHHh-cccccceeeccCCceEEEEEeccccC----------------------ccccce---------
Confidence 4567899999998876 56677899999999999999985320 000000
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
| ..++..|+..|.++.|-.+. ++++++ ||.|.+||.--|
T Consensus 776 ------------------------------C--------QfTY~aHkk~i~~igfL~~l-r~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 776 ------------------------------C--------QFTYQAHKKPIHDIGFLADL-RSIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred ------------------------------e--------eeEhhhccCcccceeeeecc-ceeeec--cCcceeeccccc
Confidence 1 23455799999999999876 677654 899999998888
Q ss_pred ceeEEec-C-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 410 TPLAVLR-P-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 410 ~~l~tl~-~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
+++..+. . ..+ .+..+...+. -+...++++++...+|+++|.+.+ .|.|.-........
T Consensus 815 r~Laq~~dapk~~-a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsc----------e~~~E~kVcna~~P------ 875 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEG-AGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSC----------EWTCELKVCNAPGP------ 875 (1034)
T ss_pred chhHhhhcCcccC-CCceeEeccc--Ccchheeeeccchhhheeeecccc----------cceeeEEeccCCCC------
Confidence 7776432 1 222 4555555411 245566666678999999999987 33443333222211
Q ss_pred cccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 488 AFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+++..+.|++++++-..|+|.+.|.++|+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 1233578899999999999999999999998876
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00034 Score=82.48 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=136.3
Q ss_pred EecCCCEEEEEEc----------CCeEEEEECCCCc-eEEecc----C---CCCeEEEEEeeCCCCEEEEEE-C-CCcEE
Q 039790 224 IAVNRNYICYGLK----------LGNIRILNIITAL-RSLLRG----H---TQRVTDMAFFAEDVHLLASAS-V-DGRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~----------DG~IrIWd~~~~~-~~~l~~----H---~~~V~slaf~s~dg~~LaSgs-~-DgtV~ 283 (1395)
+|+||++|+.+.. +..|.|||..+.. +..+.- + ...-..+++ ++||++|+... . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE-CCCCCEEEEecCCCCCEEE
Confidence 8999998888754 7899999999974 333331 1 122346778 89999888776 3 68999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+|+.+++. +..+.+ .+ .. .+.-.... .+++.|.++....+-....++..
T Consensus 132 VvD~~~~kv-----------v~ei~v---p~-~~-~vy~t~e~-~~~~~~~Dg~~~~v~~d~~g~~~------------- 181 (352)
T TIGR02658 132 VVDLEGKAF-----------VRMMDV---PD-CY-HIFPTAND-TFFMHCRDGSLAKVGYGTKGNPK------------- 181 (352)
T ss_pred EEECCCCcE-----------EEEEeC---CC-Cc-EEEEecCC-ccEEEeecCceEEEEecCCCceE-------------
Confidence 999999872 222221 11 10 11111111 12233344444443322222110
Q ss_pred ccccceEEEcccCCCeEE-EEEec-CCCcEEEEEeCCCcEEEEeCCC-----CceeEEecCC-------CCCCeeEEEEe
Q 039790 364 ELINGVQLVGKHDGEITE-LSMCQ-WLTTRLASASLDGTVKIWDDRK-----STPLAVLRPY-------DGHPVNCVTFL 429 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~s-lafsp-dg~~~LaSgs~Dg~IrIWDl~s-----g~~l~tl~~h-------~~~~V~sV~fs 429 (1395)
......+.+-...+.. -.|.+ +| +++..... |+|.+.|+.. ...+..+... .+ .+.-++++
T Consensus 182 --~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~-g~q~ia~~ 256 (352)
T TIGR02658 182 --IKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG-GWQQVAYH 256 (352)
T ss_pred --EeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC-cceeEEEc
Confidence 0001111110011000 04456 66 55555554 9999999644 3333333211 11 33448998
Q ss_pred ecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 430 IGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++++++++... ..+.|.++|..++ +.+..+...... ..+++++||
T Consensus 257 ----~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~------------kvi~~i~vG~~~----------~~iavS~Dg 310 (352)
T TIGR02658 257 ----RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG------------KRLRKIELGHEI----------DSINVSQDA 310 (352)
T ss_pred ----CCCCEEEEEecCCccccccCCCCEEEEEECCCC------------eEEEEEeCCCce----------eeEEECCCC
Confidence 89988887431 1258999999888 888887753321 259999999
Q ss_pred C-EEEEEe-CCCeEEEEEcCCCC
Q 039790 501 L-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 501 ~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
+ +|++.. .++.|.++|..+++
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCe
Confidence 9 777555 67889999998865
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-05 Score=90.41 Aligned_cols=237 Identities=11% Similarity=0.058 Sum_probs=126.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++..++.++.+|.|+.||..+|.+.--..-.+.+.+.-. - .+..++.++.||.|+.||..+|+...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~-v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---- 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL-V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---- 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE-E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc----
Confidence 567888888999999999988864322222233332211 1 3456777888999999999998732211100000
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe-EEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI-TELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V-~slafs 385 (1395)
+. . .... ..... ++.++++..++.++.++...... .|.... ... .+...+. +-..+ .+..+.
T Consensus 178 ~~-~---~~~~-sp~~~--~~~v~~~~~~g~v~ald~~tG~~--~W~~~~------~~~-~g~~~~~-~~~~~~~~p~~~ 240 (377)
T TIGR03300 178 LT-L---RGSA-SPVIA--DGGVLVGFAGGKLVALDLQTGQP--LWEQRV------ALP-KGRTELE-RLVDVDGDPVVD 240 (377)
T ss_pred ee-e---cCCC-CCEEE--CCEEEEECCCCEEEEEEccCCCE--eeeecc------ccC-CCCCchh-hhhccCCccEEE
Confidence 00 0 0000 11111 23455555567777777533211 111000 000 0000000 00000 111121
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
+ .+++.++.+|.++.||..+|+.+...... ....... ++..++++. .||.|..+|..++
T Consensus 241 --~-~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~------~~~~vyv~~-~~G~l~~~d~~tG-------- 299 (377)
T TIGR03300 241 --G-GQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV------DDNRLYVTD-ADGVVVALDRRSG-------- 299 (377)
T ss_pred --C-CEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE------eCCEEEEEC-CCCeEEEEECCCC--------
Confidence 3 47777888999999999999888766521 2233333 345566544 8999999999888
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-.+....... +. .... .+..|+.++.+|.|++||..+|+
T Consensus 300 ----~~~W~~~~~~~~~-------~s-sp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 300 ----SELWKNDELKYRQ-------LT-APAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ----cEEEccccccCCc-------cc-cCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 4443331111110 00 1111 35688888999999999988875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=87.45 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=144.8
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
.+.++++++.+|.|.-||..+|.+. .+.-.......... ++..++.++.||.|+.||..+|+.....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~--------- 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRA--------- 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeee---------
Confidence 4678888889999999999888543 32222222223333 4677888889999999999998732111
Q ss_pred EEEEecCCCCCcc-EEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEcccCCCeEEE
Q 039790 306 AIQILADGDSVHP-RVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVGKHDGEITEL 382 (1395)
Q Consensus 306 ~l~~~~~~~~~v~-~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~~h~~~V~sl 382 (1395)
.+ ...+. .... .++.+++...++.++.++...... .|..... ...+.... +.
T Consensus 132 --~~----~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-------------~W~~~~~~~~~~~~~~~----sp 186 (377)
T TIGR03300 132 --KL----SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-------------LWTYSRVTPALTLRGSA----SP 186 (377)
T ss_pred --cc----CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-------------eeEEccCCCceeecCCC----CC
Confidence 10 01111 1111 244667766777788887643211 1111000 00001011 11
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC---CCe-------eEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG---HPV-------NCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~---~~V-------~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+. + ..++.+..+|.+..+|.++|+.+........ ..+ .+..+ .+..+++++ .+|.++.|
T Consensus 187 ~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~------~~~~vy~~~-~~g~l~a~ 256 (377)
T TIGR03300 187 VIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV------DGGQVYAVS-YQGRVAAL 256 (377)
T ss_pred EEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE------ECCEEEEEE-cCCEEEEE
Confidence 111 2 3677788899999999999987765432110 001 11122 244566655 89999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIA 532 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~ 532 (1395)
|..++ +.+-...... . . ... .++..|+.++.||.|+.+|..+|+..- ....+.
T Consensus 257 d~~tG------------~~~W~~~~~~-~--~--------~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W--~~~~~~ 309 (377)
T TIGR03300 257 DLRSG------------RVLWKRDASS-Y--Q--------GPA--VDDNRLYVTDADGVVVALDRRSGSELW--KNDELK 309 (377)
T ss_pred ECCCC------------cEEEeeccCC-c--c--------Cce--EeCCEEEEECCCCeEEEEECCCCcEEE--cccccc
Confidence 99888 4443333111 0 0 011 245566677789999999998775210 000011
Q ss_pred eeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 533 EFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 533 ~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
......|.+ .+.. -.+.+.+|.|++|+..++++.
T Consensus 310 ~~~~ssp~i--~g~~-l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 310 YRQLTAPAV--VGGY-LVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CCccccCEE--ECCE-EEEEeCCCEEEEEECCCCCEE
Confidence 101112221 2221 112456889999999999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=84.47 Aligned_cols=309 Identities=16% Similarity=0.136 Sum_probs=181.0
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC-cEEEEECCCCCCCCCCccccc
Q 039790 224 IAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-RFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 224 ~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-tV~IWdl~tg~~~~~~~~~~~ 301 (1395)
|++ +|.+++..+. |...|.+...+-...+ +|.+.|.-..+ ..+++-++.|..|| .|-|+|..+++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~-~~~~e~~vigt~dgD~l~iyd~~~~e---------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRI-QVDPEGDVIGTNDGDKLGIYDKDGGE---------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEE-ccCCcceEEeccCCceEEEEecCCce----------
Confidence 444 7899999887 7888888777654433 57778999998 77788899999999 89999999876
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEIT 380 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~ 380 (1395)
++.+...-+.+..+..+++|..++++.....+..++..+.. .+.+ ....+-|+
T Consensus 394 -----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn---------------------v~~idkS~~~lIt 447 (668)
T COG4946 394 -----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN---------------------VRLIDKSEYGLIT 447 (668)
T ss_pred -----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC---------------------eeEecccccceeE
Confidence 33344445667789999999877777767777777764422 1222 23456799
Q ss_pred EEEEecCCCcEEEEEeCCC----cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe------cCCCeEE
Q 039790 381 ELSMCQWLTTRLASASLDG----TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG------PLNRELK 450 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G------s~Dg~I~ 450 (1395)
.++|||++ ++||-+--+| .|++||+..++....-. ..+ .=.+-+|. ||+++|..-+ +.|..+.
T Consensus 448 df~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta-~DfsPaFD----~d~ryLYfLs~RsLdPs~Drv~f 520 (668)
T COG4946 448 DFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA-YDFSPAFD----PDGRYLYFLSARSLDPSNDRVIF 520 (668)
T ss_pred EEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc-cccCcccC----CCCcEEEEEeccccCCCCCeeEE
Confidence 99999998 8999876665 59999998887554332 111 22344454 9999876543 1334333
Q ss_pred EEECCCC-CCCCCCCCcccccE----EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 451 IWASAEE-EGWLLPSDIESWKC----TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 451 IWDl~tg-~~~~~~~~~~~~~~----l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
=+....- ..++.+........ .+......+...-........-+-..+....-+++-.+|.|.++.+.-.
T Consensus 521 nf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~----- 595 (668)
T COG4946 521 NFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIH----- 595 (668)
T ss_pred EEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeecc-----
Confidence 3322211 11111111100000 0001000000000000000001122233445577778888888876431
Q ss_pred cceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceeeecccceEEecCCCCC--eecccCCCceEEEeecCC
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN--AELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~t 603 (1395)
.+|.. .-+ |. ..-|.+.+||+.+++..++.-..+ .+..+.|+ +.+ . +.+-+++||+..
T Consensus 596 ------Gefs~----yy~-gq------~~kG~l~~ydletkk~~e~k~nvs-s~rlS~D~s~ilv-k-~d~kl~~f~vek 655 (668)
T COG4946 596 ------GEFSQ----YYW-GQ------PEKGRLEKYDLETKKVEEYKDNVS-SFRLSSDGSKILV-K-LDGKLRLFDVEK 655 (668)
T ss_pred ------chhhh----hhc-CC------CccceEEEEecchhhHHHHhcccc-eEEEcCCCCEEEE-E-eCCeEEEEeccc
Confidence 11110 001 11 345789999999998876655443 34444444 444 4 446677999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.7e-05 Score=90.73 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=117.6
Q ss_pred CEEEEEEecCCCE-EEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEE-EECC--CcEEEEECCCC
Q 039790 218 LVLGRQIAVNRNY-ICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLAS-ASVD--GRFFIWNITEG 290 (1395)
Q Consensus 218 ~V~~va~Spdg~~-LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaS-gs~D--gtV~IWdl~tg 290 (1395)
.+..-.|+|||+. +++.+.+ ..|.++|+.++....+....+.+....| ++||+.|+. .+.+ ..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~-SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV-SKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE-CCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999985 6665443 5699999999977776666677778889 899986654 3333 46888888776
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
. ..+ +..+........|+|+|..++.+...+ .|++++... +.
T Consensus 268 ~--------------~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~------------------- 312 (419)
T PRK04043 268 T--------------LTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS------------------- 312 (419)
T ss_pred c--------------EEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-------------------
Confidence 5 111 112222233457999999888776532 345554422 11
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLD---------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~D---------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+...... ...|+||| ++|+..+.. ..|.+.|+.++.. +.+... + ......|+ |||+.
T Consensus 313 -~~rlt~~g~~--~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~S----PDG~~ 381 (419)
T PRK04043 313 -VEQVVFHGKN--NSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFS----SDGGS 381 (419)
T ss_pred -eEeCccCCCc--CceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEEC----CCCCE
Confidence 1111111111 24899999 555554433 3678889888764 444433 2 34468899 99998
Q ss_pred EEEEecCCCe--EEEEECC
Q 039790 439 LITGGPLNRE--LKIWASA 455 (1395)
Q Consensus 439 L~s~Gs~Dg~--I~IWDl~ 455 (1395)
|+......+. |.+.++.
T Consensus 382 I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEccCCcEEEEEEecC
Confidence 8776533333 4455553
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-07 Score=110.60 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=138.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RF 282 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV 282 (1395)
.+.++.|..|....+|++|+.+.++|+.|+..|.|++|++.+|. .....+|...|+.+.= +.+|..+++.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~veP-s~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEP-SVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccc-cCCcceeeeeccccCchH
Confidence 46677888899999999999999999999999999999999995 6688899999999998 78888777665443 47
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.+|++..-- ... +.-..-.++.|+.....-++++..+...++|.........|
T Consensus 1170 aLW~~~s~~----------~~~-------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty---------- 1222 (1516)
T KOG1832|consen 1170 ALWDASSTG----------GPR-------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY---------- 1222 (1516)
T ss_pred HHhcccccc----------Ccc-------ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh----------
Confidence 789987521 000 11112236777776555566666677777776543221110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
..+ ..+....-++..|+|++ .+++ .|| .+||+|..+.++.|..... . ..-.| ||.|..++.-
T Consensus 1223 ---lt~---~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~-~~G~F----HP~g~eVIIN 1284 (1516)
T KOG1832|consen 1223 ---LTD---TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTD-Y-GGGGF----HPSGNEVIIN 1284 (1516)
T ss_pred ---cCc---chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhhee-c-ccccc----cCCCceEEee
Confidence 000 01122233788999998 5554 466 4899999988888865432 1 12235 4999988874
Q ss_pred ecCCCeEEEEECCCC
Q 039790 443 GPLNRELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg 457 (1395)
. .|||+++.
T Consensus 1285 S------EIwD~RTF 1293 (1516)
T KOG1832|consen 1285 S------EIWDMRTF 1293 (1516)
T ss_pred c------hhhhhHHH
Confidence 3 59999987
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00035 Score=92.83 Aligned_cols=221 Identities=12% Similarity=0.155 Sum_probs=141.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEE----ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIW----NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IW----dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
..+.|.++.| -.+...|+.+..+|.|.++ +..+. .+...+.-+..+.+++|+||+..++.
T Consensus 74 ~~~~ivs~~y-l~d~~~l~~~~~~Gdi~~~~~~~~~~~~---------------~~E~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 74 PNDKIVSFQY-LADSESLCIALASGDIILVREDPDPDED---------------EIEIVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCCcEEEEEe-ccCCCcEEEEECCceEEEEEccCCCCCc---------------eeEEEEEEcCcEEEEEECCCcCEEEE
Confidence 4568999999 6777888899999999999 44433 35566677888999999999998888
Q ss_pred EEeCCeEEEEEcCCC------CccccccCCCCCccC-----------cccc-----ccc------eEEEcccCCCeEEEE
Q 039790 332 LAIGNRILKIDSNRV------GKGERFSAEEPLKCP-----------VDEL-----ING------VQLVGKHDGEITELS 383 (1395)
Q Consensus 332 ~g~~~~ii~~d~~~~------~~~~~~s~~~~~~~~-----------~~~~-----~~~------~~~l~~h~~~V~sla 383 (1395)
+...+.++....... .....+.....+.+. ..+. .++ ...+. +++.-..|+
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 888888877633210 000111111111110 0000 000 11222 555677899
Q ss_pred EecCCCcEEEEEeC---C---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECC
Q 039790 384 MCQWLTTRLASASL---D---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASA 455 (1395)
Q Consensus 384 fspdg~~~LaSgs~---D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~ 455 (1395)
|-.|| .+||+.+. + +.||||+ |.|....+-+.-.+ --.+++|. |.|.+|+++-. ....|.+|.-+
T Consensus 217 WRGDG-~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~g-Le~~l~Wr----PsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 217 WRGDG-EYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDG-LEGALSWR----PSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred ECCCC-cEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCC-ccCCccCC----CCCCEEEEEEEcCCCcEEEEEecC
Confidence 99999 78888875 3 4799999 66876666665444 55789998 99999988653 23456677632
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
| -....|...... ...-+..+.|+.|+.+|+....|. |.+|....
T Consensus 290 -G------------LrhgeF~l~~~~-----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 290 -G------------LRHGEFTLRFDP-----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred -C------------cEeeeEecCCCC-----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 2 222233332210 111224699999999999987665 99998754
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00065 Score=77.13 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=128.5
Q ss_pred EEEEec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 221 GRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 221 ~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
+..|.+ ++.++++-...+.|+.|+..++....+.... ...+++..+++ .|+.+..+ .+.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~-------- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGK-------- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTE--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCc--------
Confidence 567887 7777777778899999999998765544333 77888833564 55555554 45666988875
Q ss_pred ccceEEEEEEe-cC-CCCCccEEEEeCCCCeEEEEEeC---------CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 300 LGKIVVAIQIL-AD-GDSVHPRVCWHPHKQEILMLAIG---------NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 300 ~~~~i~~l~~~-~~-~~~~v~~v~~sp~~~~lla~g~~---------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
........ .. .....+.+++.++|. ++++... +.+++++.. ++
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-------------------- 125 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-------------------- 125 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE--------------------
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce--------------------
Confidence 11122222 22 345567899999987 4444432 346666653 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-c------eeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-T------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
+..+...-...+.|+|++++..++++-+..+.|..||+... . .+..+....+ ..-.+++. .+|++.++
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD----~~G~l~va 200 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVD----SDGNLWVA 200 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEB----TTS-EEEE
T ss_pred EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEc----CCCCEEEE
Confidence 22222234567899999999545567778889999998632 2 1222222222 47889998 88987776
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.- ..+.|.++|.. | +.+..+.....
T Consensus 201 ~~-~~~~I~~~~p~-G------------~~~~~i~~p~~ 225 (246)
T PF08450_consen 201 DW-GGGRIVVFDPD-G------------KLLREIELPVP 225 (246)
T ss_dssp EE-TTTEEEEEETT-S------------CEEEEEE-SSS
T ss_pred Ec-CCCEEEEECCC-c------------cEEEEEcCCCC
Confidence 54 78999999987 6 78887876633
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=80.57 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=87.5
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC---c---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITA---L---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~---~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++.+.||+.||.- .|..|.|-..++. . ...-+.-.-.=..++| ++|+.+||.+...|+|+++|+........
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W-SpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW-SPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEE-CCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 4567889888774 5677887766654 1 2222222334578999 99999999999999999999986442111
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCC------CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPH------KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~------~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
.+. ....++-...+..++|-.. ...+++....+.+..+.... +....|...+ ..
T Consensus 81 ~p~--------~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~-gt~q~y~e~h-----------sf 140 (282)
T PF15492_consen 81 PPA--------MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV-GTNQGYQENH-----------SF 140 (282)
T ss_pred Ccc--------cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc-ccCCcceeeE-----------EE
Confidence 110 0011122233333444322 23677777777776665421 1111111100 01
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeC
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~ 397 (1395)
.....+...|+++.|+|.. ++|+.|+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h-~LLlVgG~ 167 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKH-RLLLVGGC 167 (282)
T ss_pred EecccCCCceeEEEEcCCC-CEEEEecc
Confidence 2222346789999999988 66665553
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-05 Score=94.19 Aligned_cols=240 Identities=14% Similarity=0.191 Sum_probs=152.1
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-----------CCCEEEEEECCCcEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-----------DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-----------dg~~LaSgs~DgtV~IWd 286 (1395)
-.++.|++.| +||+|+. ..|.|.|..+- .+..+.-|...|+.+.|.+. ..-+|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4567788877 7999987 57888888775 47788889999999999421 123688888999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
...+. .+..+.++...+..+||-+. ...++++-.+...+.+|....|..
T Consensus 96 ~~~~s--------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------- 147 (1062)
T KOG1912|consen 96 FVLAS--------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------- 147 (1062)
T ss_pred ehhhh--------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------
Confidence 99876 33445667777788888664 334555544444444443333321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCCCC-----------C----
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPYDG-----------H---- 421 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h~~-----------~---- 421 (1395)
+...........|+.+.|.+.+.|...+..|.|.+-+.-. |+..+.-..|.. .
T Consensus 148 -----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 148 -----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred -----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 1111122335667888887767777666777777665421 233333223221 0
Q ss_pred ---------CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccce
Q 039790 422 ---------PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQ 492 (1395)
Q Consensus 422 ---------~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~ 492 (1395)
....++|+ |.-+.++... ..+.+.|+|+.-. .|+.......+...
T Consensus 223 ~~~sa~fity~a~faf~----p~~rn~lfi~-~prellv~dle~~------------~~l~vvpier~~ak--------- 276 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFS----PHWRNILFIT-FPRELLVFDLEYE------------CCLAVVPIERGGAK--------- 276 (1062)
T ss_pred CCcchhHHHHHHhhhcC----hhhhceEEEE-eccceEEEcchhh------------ceeEEEEeccCCcc---------
Confidence 11234555 5444333334 6899999999876 78877766554321
Q ss_pred EEEEeCCC--CEEEEEeCCCeEEEEEcCC
Q 039790 493 VVALNRAG--LFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 493 ~l~~S~dg--~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.+.+-|++ ..|.+.-.||.+.||--..
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 24444554 4788888999999997654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=102.89 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=128.2
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
.+..|++.+.|..|.+||..+|+-. +|.... +| .....|+|+. +++.+|+ +
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~~p-------~ys~~~-------------------w~-s~asqVkwnyk~p~vlas-s 177 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPHRP-------FYSTSS-------------------WR-SAASQVKWNYKDPNVLAS-S 177 (1081)
T ss_pred CCcceeeccccccceeeeccCCCcc-------eeeeec-------------------cc-ccCceeeecccCcchhhh-c
Confidence 3478999999999999997766522 222211 12 2334567876 5555555 5
Q ss_pred cCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 236 KLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
....|+|||...| .+..+++|...|+.++|+...-..+.+++.||+|+.||......+..+.. ..
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-------------tt 244 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-------------TT 244 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-------------cc
Confidence 5678999999887 68899999999999999655566799999999999999987653222211 11
Q ss_pred CCCccEEEEeCCCCeE-EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC----
Q 039790 314 DSVHPRVCWHPHKQEI-LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL---- 388 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~l-la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg---- 388 (1395)
...+..-++-|-|.-+ +.-..++.++......... ......+...+++.|.||++.|..+-|-..+
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d---------~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD---------LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchh---------hhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 2333344444544322 2222233333322211100 0001123445689999999999887774322
Q ss_pred -----CcEEEEEeCCCcEEEEeCCC
Q 039790 389 -----TTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 389 -----~~~LaSgs~Dg~IrIWDl~s 408 (1395)
...|+|-|.|.++|+|-+.+
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 14799999999999998754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00031 Score=85.91 Aligned_cols=213 Identities=12% Similarity=0.070 Sum_probs=123.1
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCE-EEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHL-LASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~-LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
..|.+-|.+......+.... .+..-.| ++||+. ++..+.+ ..|+++|+.+++ ...+. ..
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~w-SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------~~~lt-~~ 231 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKW-ANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------KEKIA-SS 231 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEE-CCCCCcEEEEEEccCCCCEEEEEECCCCc--------------EEEEe-cC
Confidence 45666666655444343333 7888999 899984 5544443 469999998876 11121 23
Q ss_pred CCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 314 DSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
........|+|++..++.+... ..+++++... +. ...+..+........|+|||..
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~--------------------~~~LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KT--------------------LTQITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-Cc--------------------EEEcccCCCccCccEECCCCCE
Confidence 3344457899999988766542 2355554321 11 2223333333345689999944
Q ss_pred EEEEEeCCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--------CeEEEEECCCCCCC
Q 039790 391 RLASASLDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--------RELKIWASAEEEGW 460 (1395)
Q Consensus 391 ~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--------g~I~IWDl~tg~~~ 460 (1395)
++++....| .|.++|+.++...+... . + . ....|+ |||++|+.+...+ ..|.+.|+.++
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g-~-~~~~~S----PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--- 359 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-G-K-NNSSVS----TYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--- 359 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCcc-C-C-C-cCceEC----CCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---
Confidence 444443444 57888888776543332 1 2 1 224899 9999998876333 36777787765
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-C--eEEEEEcCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-N--AIYAIHMDY 519 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-g--~I~iWdl~~ 519 (1395)
.. +.+.... . +....|+|||..|+....+ + .+++++++.
T Consensus 360 ---------~~-~~LT~~~-~---------~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 360 ---------YI-RRLTANG-V---------NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ---------Ce-EECCCCC-C---------cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 22 2222211 1 1137899999987766533 2 355566543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.8e-06 Score=88.64 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=107.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEec-cCCCCeEEEEEeeCCCCEEEEEEC-----C
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLR-GHTQRVTDMAFFAEDVHLLASASV-----D 279 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~-~H~~~V~slaf~s~dg~~LaSgs~-----D 279 (1395)
+...+..|...-.+-+.+.-++.+++|+.||.+.+++.+.-. ...+. .|.+ -.+.++ -..+++|.+++. -
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~-~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKI-CRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccce-eecccEEecCCcceEeec
Confidence 334444444443344456667889999999999999987621 11111 1221 122333 233454544322 1
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+..++|+++..+ .+.........++++|-||..+.++++|.+++++.+|+.+...
T Consensus 159 d~~~a~~~~p~~--------------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----------- 213 (319)
T KOG4714|consen 159 DNFYANTLDPIK--------------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----------- 213 (319)
T ss_pred cceeeecccccc--------------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------
Confidence 245666665433 1111122233388999999999999999998888887765432
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.+...+..|+..|+.+-|+|.++..|++++.||.+-.||..
T Consensus 214 -------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 214 -------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 12456778999999999999998999999999999999965
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-05 Score=92.19 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=128.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
+.+.|+++ .+++|+-|+.+|.|++++..... .....|+.. ..+|.+++||+.||+|.|-.+-+++..
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 44555555 46899999999999999988766 555556554 457999999999999999998887621
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCC-----CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPH-----KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-----~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
...+....+.+|+++|+ .+.++++|..| ++.....-.+.. .-..
T Consensus 107 ------------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk------------------~~v~ 155 (846)
T KOG2066|consen 107 ------------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK------------------DSVV 155 (846)
T ss_pred ------------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc------------------ccee
Confidence 11233556778999997 33455555555 555433222211 0123
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
+....+.|.++.|. | +++|-++.+| |+|||+.+++.+..+..... ..-..+.|. +...|+. | +-
T Consensus 156 l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-----~~~~LVI-G-W~ 224 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-----DEDRLVI-G-WG 224 (846)
T ss_pred eecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-----CCCeEEE-e-cC
Confidence 44567899999996 3 7999998888 99999999988887764432 134567885 4445555 6 78
Q ss_pred CeEEEEECCC
Q 039790 447 RELKIWASAE 456 (1395)
Q Consensus 447 g~I~IWDl~t 456 (1395)
.+|+|..++.
T Consensus 225 d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 DSVKICSIKK 234 (846)
T ss_pred CeEEEEEEec
Confidence 8999999873
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=91.29 Aligned_cols=264 Identities=14% Similarity=0.110 Sum_probs=164.2
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--C--ceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--A--LRSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~t 289 (1395)
|.+.|+-|.. .-.+++.+++.||.++.|.-.. | -+..++.|-+.|.+++. +.++.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~-S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV-SYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc-cccceeEeeccCcccceeEEEeec
Confidence 6666665533 3467999999999999998765 2 35567889999999998 889999999888 99999999987
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC----eEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ----EILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~----~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-.... -+++ ...-..++|....+ .+.++.. ++.+.++|.......
T Consensus 86 ~Dmin-----------miKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--------------- 135 (558)
T KOG0882|consen 86 FDMIN-----------MIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--------------- 135 (558)
T ss_pred cchhh-----------hccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc---------------
Confidence 54211 0000 00011233332222 2333333 445555554322211
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC------CceeEEec---------CCCCCCeeEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK------STPLAVLR---------PYDGHPVNCVTFL 429 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~---------~h~~~~V~sV~fs 429 (1395)
.....+-|..+|.++.+.+-+ ..+++....|.|.-|.... .+....++ -.++ ...++.|+
T Consensus 136 ---~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efs 210 (558)
T KOG0882|consen 136 ---DGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFS 210 (558)
T ss_pred ---cceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEc
Confidence 123344599999999999998 7899999999999998762 12222222 2223 67999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC-----CCC---cccccEEEEEeccC----cccccccccccceEEEEe
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLL-----PSD---IESWKCTQTLELKS----SAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~-----~~~---~~~~~~l~tl~~h~----~~i~~~~~~~~~~~l~~S 497 (1395)
|+|..+.+.+ .|..|+++++++++-... ... .++..-+..+.... ......+.......++|.
T Consensus 211 ----p~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 211 ----PDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ----cccCcccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 9999999988 999999999999831100 000 00000000000000 000000111122358899
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..|++|+-|+-=| |++.++.++.
T Consensus 286 es~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecCe
Confidence 9999999988766 8999988753
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=87.24 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=85.8
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+.|++++-+|.-.+++++|+.||.|-+||.|.. .+...++.|+. +++.|-|.| .++..|++++ .||.+--||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHp---k~p~~Lft~s-edGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHP---KNPEHLFTCS-EDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccC---CCchheeEec-CCCcEEEEcCC
Confidence 349999999987679999999999999999987 45567789997 999999973 4677889866 99999999987
Q ss_pred CCCCCCCC-CC-cccc---cEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 456 EEEGWLLP-SD-IESW---KCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 456 tg~~~~~~-~~-~~~~---~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+.--.+-+ .+ ...| ..++. ++..+-. ..-.-..-.|.--|..|++|+.-+.||+++
T Consensus 255 ~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll-----~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 255 TTFLSISNQASVISSWLSGDPVKSRIEITSLL-----PSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CceEEecCccccccccccCCcccceEeeeccc-----cccceeeeeeeccCceEEeccccceEEEec
Confidence 43000000 00 0000 11111 1100000 000111345666789999999999999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0015 Score=77.09 Aligned_cols=216 Identities=9% Similarity=0.071 Sum_probs=124.2
Q ss_pred EEEEEecCCCEEEEEE-c-CCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGL-K-LGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs-~-DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
..+++++||++|+... . +..|.|+|+.++.+. .+.- .+...-... +.+. .+ .-|.||......+.+....
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t-~e~~-~~-~~~~Dg~~~~v~~d~~g~~--- 180 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPT-ANDT-FF-MHCRDGSLAKVGYGTKGNP--- 180 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEe-cCCc-cE-EEeecCceEEEEecCCCce---
Confidence 4678999999998765 3 789999999998533 2322 222222222 2222 22 3345666666555443210
Q ss_pred cccccceEEEEEEecCCCCCc-cEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEEEc
Q 039790 297 PQILGKIVVAIQILADGDSVH-PRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQLVG 373 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v-~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~l~ 373 (1395)
......++......+ ..=.|.+ ++..++++ ..+.+..+|........ ...|..... ...-.
T Consensus 181 ------~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~eG~V~~id~~~~~~~~---------~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 181 ------KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT-YTGKIFQIDLSSGDAKF---------LPAIEAFTEAEKADG 244 (352)
T ss_pred ------EEeeeeeecCCccccccCCceEcCCCcEEEEe-cCCeEEEEecCCCccee---------cceeeeccccccccc
Confidence 111222222111110 0113455 56555544 44999999864322110 000110000 00001
Q ss_pred ccCCCeEEEEEecCCCcEEEEEe---------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEe
Q 039790 374 KHDGEITELSMCQWLTTRLASAS---------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGG 443 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs---------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~G 443 (1395)
-..+.+.-+++++++.++++... ..+.|.++|..+++.+..+..- ..+..|+|+ +||+ +|+++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS----~Dgkp~lyvtn 318 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVS----QDAKPLLYALS 318 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEEC----CCCCeEEEEeC
Confidence 13344455999999954444331 1257999999999999988743 279999999 9999 777665
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
..++.|.++|..++ +.+.++.
T Consensus 319 ~~s~~VsViD~~t~------------k~i~~i~ 339 (352)
T TIGR02658 319 TGDKTLYIFDAETG------------KELSSVN 339 (352)
T ss_pred CCCCcEEEEECcCC------------eEEeeec
Confidence 47889999999988 8888773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=87.78 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=132.3
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCC-eEEEEEeeCCCCEEEEEECCCc-----EEEEECCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQR-VTDMAFFAEDVHLLASASVDGR-----FFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~-V~slaf~s~dg~~LaSgs~Dgt-----V~IWdl~tg~ 291 (1395)
.|.| |++.+..+|.|+.+|.|.+++-.-...+.|..+... |..+-. -.+.++|++.+.|+. |+|||+..-+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 889999999999999998887666666788888777 544443 444478999888865 8999998653
Q ss_pred CCCCCcccccceEEEEEEec----CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 292 DEEDKPQILGKIVVAIQILA----DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~----~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.-. ...++...+.+. ....++.+++.+.+- ..+++|..++.+...-....+.. ..
T Consensus 104 ~n~-----sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr---------------gs 162 (933)
T KOG2114|consen 104 KNN-----SPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR---------------GS 162 (933)
T ss_pred CCC-----CcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc---------------cc
Confidence 111 122332223333 235667788888885 45666666555555433322110 00
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcE-EEEEecC
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIV-LITGGPL 445 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~-L~s~Gs~ 445 (1395)
.........++|+.++|..++...+. ...-..|.+|.+....+ +..+..|.. .+.|..|+ ++.. ++++|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lF-v~Tt~~V~~y~l~gr~p~~~~ld~~G~-~lnCss~~-----~~t~qfIca~-- 233 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLF-VATTEQVMLYSLSGRTPSLKVLDNNGI-SLNCSSFS-----DGTYQFICAG-- 233 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEE-EEecceeEEEEecCCCcceeeeccCCc-cceeeecC-----CCCccEEEec--
Confidence 12223334578999999998844233 33445799999884443 445666655 89999997 3444 55544
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
+..|.+||....
T Consensus 234 ~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 234 SEFLYFYDSDGR 245 (933)
T ss_pred CceEEEEcCCCc
Confidence 678999998643
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.9e-05 Score=85.07 Aligned_cols=84 Identities=7% Similarity=0.124 Sum_probs=70.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
+.+.-+.+|...|.+++|||..+ ++..++.+..|+|.|+++.+ ...+..| ..+|+++|.-.+.++|..|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33445667888999999999776 78899999999999999985 5556666 789999996566788999999999999
Q ss_pred EECCCCC
Q 039790 285 WNITEGP 291 (1395)
Q Consensus 285 Wdl~tg~ 291 (1395)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9999765
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.1e-05 Score=86.84 Aligned_cols=292 Identities=10% Similarity=0.010 Sum_probs=180.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc-
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK- 236 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~- 236 (1395)
...+.+++.||.++.|- .++ +-.+ ..+..+..|-+.|.+++.+-+|.++++++.
T Consensus 20 a~fiiqASlDGh~KFWk-Ks~----------isGv--------------EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWK-KSR----------ISGV--------------EFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred hheEEeeecchhhhhcC-CCC----------ccce--------------eehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 36788999999999998 321 0011 234556678888999999999999999887
Q ss_pred CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCC----CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 237 LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDV----HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 237 DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg----~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|..++++|+.+-.. ..+..-.+. +.|....| .+-++.-.+|.|.|+|-..+.|. ...+
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------------~~~f 139 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------------DGYF 139 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc------------ccee
Confidence 99999999987421 111111122 22322233 33444556789999997765432 2234
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc--cceEEEcccCCCeEEEEEecC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI--NGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~l~~h~~~V~slafspd 387 (1395)
.+-|...|.++.+.+.+..+++. ..++++-+|.... .|..... -..|... .-+..+........++.|+|+
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSi-D~~gmVEyWs~e~----~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSI-DISGMVEYWSAEG----PFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred cccccCceEEEEeeccccceeec-cccceeEeecCCC----cccCccc--cccccccccchhhcccccccCccceEEccc
Confidence 45577788888888888654444 4445555555431 0100000 0001111 112233345667889999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEec--------------------------------CCCCCCeeEEEEeecCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLR--------------------------------PYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--------------------------------~h~~~~V~sV~fs~~~~pd 435 (1395)
| ..+.+-+.|..||++++++|+.++.+. .|....-+.++|. ..
T Consensus 213 g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd----es 287 (558)
T KOG0882|consen 213 G-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD----ES 287 (558)
T ss_pred c-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc----CC
Confidence 9 899999999999999999987666543 1222234567776 77
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-----------------ccccccceEEEEeC
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-----------------LEDAFFNQVVALNR 498 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-----------------~~~~~~~~~l~~S~ 498 (1395)
|.+|+.+. ==-|++.++.++ .+++.+--.. .++- ......+-.+-+.+
T Consensus 288 ~~flly~t--~~gikvin~~tn------------~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~ 352 (558)
T KOG0882|consen 288 GNFLLYGT--ILGIKVINLDTN------------TVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK 352 (558)
T ss_pred CCEEEeec--ceeEEEEEeecC------------eEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccCC
Confidence 88888743 334899999887 5555442111 0000 00011223455778
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 039790 499 AGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWd 516 (1395)
|..+++++-..+.+|+|.
T Consensus 353 dpt~~c~a~kk~rfylf~ 370 (558)
T KOG0882|consen 353 DPTIVCTAFKKNRFYLFR 370 (558)
T ss_pred CCeEEEeeeecceEEEEe
Confidence 888999988999999993
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0019 Score=83.16 Aligned_cols=222 Identities=10% Similarity=0.124 Sum_probs=132.8
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
.+.|.++.| -.+++.|+.+..+|.|.+.|..+.. +...+..+..|.+++|+|++..++.+...+
T Consensus 68 d~~i~s~~f-l~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 68 DDEIVSVQF-LADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred CcceEEEEE-ecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 368999999 7788888889999999999888764 455666778899999999998777776666
Q ss_pred eEEEEEcCCC---Cccc---cccCCCCCccCccccccceE----------------EEc--ccCCCeEEEEEecCCCcEE
Q 039790 337 RILKIDSNRV---GKGE---RFSAEEPLKCPVDELINGVQ----------------LVG--KHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 337 ~ii~~d~~~~---~~~~---~~s~~~~~~~~~~~~~~~~~----------------~l~--~h~~~V~slafspdg~~~L 392 (1395)
.++....... .+.. .+...........+..+..+ .+. .-.+.=+.|+|--|| .++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEE
Confidence 6665433110 0000 00000000110011000000 000 011223568999888 788
Q ss_pred EEEe----CC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECCCCCCCCCCCC
Q 039790 393 ASAS----LD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 393 aSgs----~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
|+.. .+ +.|+|||-. |..-.+-....+ -=.+++|- |.|.++++... .|+.|.+|.-+.-
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~-l~~~LsWk----Psgs~iA~iq~~~sd~~IvffErNGL-------- 276 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEG-LQHSLSWK----PSGSLIAAIQCKTSDSDIVFFERNGL-------- 276 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccc-cccceeec----CCCCeEeeeeecCCCCcEEEEecCCc--------
Confidence 8733 23 789999965 554333333333 45789998 99999888652 4567888875432
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE---EeCCCeEEEEEcCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA---NAKKNAIYAIHMDY 519 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS---gs~Dg~I~iWdl~~ 519 (1395)
..+...-.+...... +..++|+.++.+|+. ......|++|.+..
T Consensus 277 -~hg~f~l~~p~de~~---------ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 277 -RHGEFVLPFPLDEKE---------VEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -cccccccCCcccccc---------hheeeecCCCCceeeeecccccceEEEEEecC
Confidence 111111111111110 335999999999988 55566699999754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0013 Score=73.85 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCce-EEecc---CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 237 LGNIRILNIITALR-SLLRG---HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 237 DG~IrIWd~~~~~~-~~l~~---H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+|.|..||..+|.. -...- ... ..+..+ .++.++++++.++.|+.||..+|+. +..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~-----------~W~~~~--~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGG-PVATAV--PDGGRVYVASGDGNLYALDAKTGKV-----------LWRFDL--P 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSS-EEETEE--EETTEEEEEETTSEEEEEETTTSEE-----------EEEEEC--S
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCC-ccceEE--EeCCEEEEEcCCCEEEEEECCCCCE-----------EEEeec--c
Confidence 68999999988743 22221 222 221122 2566777889999999999999871 112222 1
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCc
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~ 390 (1395)
..... . ....++.+++...++.++.++... ++. .|.. .... ... ......+..++ .
T Consensus 66 ~~~~~-~--~~~~~~~v~v~~~~~~l~~~d~~t-G~~------------~W~~----~~~~~~~~~-~~~~~~~~~~~-~ 123 (238)
T PF13360_consen 66 GPISG-A--PVVDGGRVYVGTSDGSLYALDAKT-GKV------------LWSI----YLTSSPPAG-VRSSSSPAVDG-D 123 (238)
T ss_dssp SCGGS-G--EEEETTEEEEEETTSEEEEEETTT-SCE------------EEEE----EE-SSCTCS-TB--SEEEEET-T
T ss_pred ccccc-e--eeecccccccccceeeeEecccCC-cce------------eeee----ccccccccc-cccccCceEec-C
Confidence 11111 1 123445677777777788887433 221 0110 0000 011 11222222224 6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCC----------eeEEEEeecCCCCCcEEEEEecCCCe-EEEEECCCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHP----------VNCVTFLIGPHPQHIVLITGGPLNRE-LKIWASAEEEG 459 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~----------V~sV~fs~~~~pdg~~L~s~Gs~Dg~-I~IWDl~tg~~ 459 (1395)
.++.+..++.|..+|.++|+.+..+....... ...+.+ .++ .++.+. .++. +.+ |+.++
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~v~~~~-~~g~~~~~-d~~tg-- 193 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-----SDG-RVYVSS-GDGRVVAV-DLATG-- 193 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-----CTT-EEEEEC-CTSSEEEE-ETTTT--
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-----ECC-EEEEEc-CCCeEEEE-ECCCC--
Confidence 78888889999999999999998887654211 123333 345 555544 6675 555 99988
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-... .... ......++..|+.++.++.|++||+.+|+
T Consensus 194 ----------~~~w~~~-~~~~-----------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 194 ----------EKLWSKP-ISGI-----------YSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----------EEEEEEC-SS-E-----------CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----------CEEEEec-CCCc-----------cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5332222 1111 01134667777777799999999999874
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0019 Score=75.15 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=143.9
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-------cCCC-----CeEEEE-EeeCCCCEEEEEECCCcEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-------GHTQ-----RVTDMA-FFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-------~H~~-----~V~sla-f~s~dg~~LaSgs~DgtV~IW 285 (1395)
.++...+.||+.|+-. ..|.|.+||..+..+..+. .... ++.-+. |+..+|++++..+. |..+|.
T Consensus 269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 3455567799988774 5589999999886433221 1111 111122 44568899998886 678887
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+...+- .+++ .+...|.-..+..+...++.+..++ .+.+++... +.
T Consensus 347 ~~~~~~--------------~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-~e---------------- 393 (668)
T COG4946 347 RPWDGY--------------SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-GE---------------- 393 (668)
T ss_pred CCCCCe--------------eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC-ce----------------
Confidence 776654 2222 2233355555555555555555555 555555432 21
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+...-+.|.++..+++| ++++.+.....|-++|+.+|.....=+...+ -|+...|+ |+++|++-+=
T Consensus 394 ----~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~----~nsr~iAYaf- 462 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWH----PNSRWIAYAF- 462 (668)
T ss_pred ----EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEc----CCceeEEEec-
Confidence 45566677889999999999 7888888888899999999986555445555 89999998 9999999753
Q ss_pred CC----CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 445 LN----RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 445 ~D----g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
-+ ..|+|+|+.++ +.... ...... ..+-+|.+||++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~------------Kiy~v-TT~ta~---------DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGG------------KIYDV-TTPTAY---------DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCC------------eEEEe-cCCccc---------ccCcccCCCCcEEEEEe
Confidence 34 47999999887 43322 111111 11367889998876544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.6e-06 Score=91.34 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=95.0
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-----TPLAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRE 448 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-----~~l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~ 448 (1395)
..+.|.++.|...+ +++..|+..|.|..+|+|.+ .+.+.+. |.. .|+++... . ++++|++++ .+|+
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S-svtslq~L----q~s~q~LmaS~-M~gk 322 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS-SVTSLQIL----QFSQQKLMASD-MTGK 322 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc-chhhhhhh----ccccceEeecc-CcCc
Confidence 56778889998877 79999999999999999864 4555554 665 89998876 3 678888866 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccE---EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKC---TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~---l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++||++-. +| ++++.+|....... -+-..+....|++++.|-..|||.+..|.
T Consensus 323 ikLyD~R~~------------K~~~~V~qYeGHvN~~a~l-------~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 323 IKLYDLRAT------------KCKKSVMQYEGHVNLSAYL-------PAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred eeEeeehhh------------hcccceeeeeccccccccc-------ccccccccceEEEccCeeEEEEEecccCc
Confidence 999999887 67 99999998653221 13345666778889999999999998864
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=62.18 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=36.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILN 244 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd 244 (1395)
+++..+.+|.+.|++++|++++++|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0063 Score=69.08 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=116.3
Q ss_pred EEEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEecc------CCCCeEEEEEeeCCCCEEEEEECC--------CcEE
Q 039790 219 VLGRQIA-VNRNYICYGLKLGNIRILNIITALRSLLRG------HTQRVTDMAFFAEDVHLLASASVD--------GRFF 283 (1395)
Q Consensus 219 V~~va~S-pdg~~LasGs~DG~IrIWd~~~~~~~~l~~------H~~~V~slaf~s~dg~~LaSgs~D--------gtV~ 283 (1395)
..++.+. +++. |+.+.. +.++++|..++....+.. .....+++++ .++|++.++.... |.|+
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceE
Confidence 7788888 5654 555555 445666999885443322 3456889999 8999988877654 5577
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.++.. ++ +......-.....++|+++++.++++.. .+.|.+++....+...
T Consensus 119 ~~~~~-~~---------------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~------------ 170 (246)
T PF08450_consen 119 RIDPD-GK---------------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL------------ 170 (246)
T ss_dssp EEETT-SE---------------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE------------
T ss_pred EECCC-Ce---------------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce------------
Confidence 77776 43 1111122334568999999988776554 5677777764322100
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
........+....+..-.+++..+| ++.++....+.|.++|.. |+.+..+..... .+++++|. .++...|+.+
T Consensus 171 -~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fg---g~~~~~L~vT 243 (246)
T PF08450_consen 171 -SNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFG---GPDGKTLYVT 243 (246)
T ss_dssp -EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEE---STTSSEEEEE
T ss_pred -eeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEE---CCCCCEEEEE
Confidence 0000011122222347789999998 788877788999999977 998888886644 89999995 1565555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00074 Score=73.57 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=94.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
.+..++.|.++++.++.-+..-..+....- .+.++.++ +|++++++.| ....|.+|.+... ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~-~~ns~~~s----nd~~~~~~Vg-ds~~Vf~y~id~~----------sey 193 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNL-TQNSLHYS----NDPSWGSSVG-DSRRVFRYAIDDE----------SEY 193 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecccc-ceeeeEEc----CCCceEEEec-CCCcceEEEeCCc----------cce
Confidence 456677888899888765543222221111 48899999 9999999999 8889999998764 224
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEe-cCCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLT-GTTTD 549 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~-~~~~d 549 (1395)
.+.+...... +.+| ...|+.....+|.+..||++.|||++....+....-..-....+....+.|+ +..+|
T Consensus 194 ~~~~~~a~t~-----D~gF---~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 194 IENIYEAPTS-----DHGF---YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLD 265 (344)
T ss_pred eeeeEecccC-----CCce---eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcce
Confidence 4443333221 1222 3788999999999999999999999874332111100111122223333333 22223
Q ss_pred cC--cCCCCeEEEEEcCCCce
Q 039790 550 AS--PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 550 ~~--~s~dg~V~lWdv~t~~i 568 (1395)
.+ ..+-+.+.|-|+.++.-
T Consensus 266 LLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 266 LLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEEecCcceEEEEEcccCce
Confidence 33 23456788888888754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0092 Score=68.38 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=134.8
Q ss_pred EEEEEec-CCCEEEEEEcCCe-EEEEECCCCc-eEEeccCCCCeE--EEEEeeCCCCEEEEEEC-----CCcEEEEECCC
Q 039790 220 LGRQIAV-NRNYICYGLKLGN-IRILNIITAL-RSLLRGHTQRVT--DMAFFAEDVHLLASASV-----DGRFFIWNITE 289 (1395)
Q Consensus 220 ~~va~Sp-dg~~LasGs~DG~-IrIWd~~~~~-~~~l~~H~~~V~--slaf~s~dg~~LaSgs~-----DgtV~IWdl~t 289 (1395)
.+++.+| .+..++.+-.-|+ ..+||..++. ...+....++.+ .-+| ++||++|++.=. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~f-s~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVF-SPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEE-cCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4567788 5667777777664 5678998874 323332222221 2457 999999998643 47899999994
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE-------EEEcCCCCccccccCCCCCccCc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL-------KIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii-------~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
+- ..+.-+..+.-.-..+.|.|++..++ ++.++... +++...+.....|-. ...
T Consensus 87 ~~-------------~ri~E~~s~GIGPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld-----~~s 147 (305)
T PF07433_consen 87 GY-------------RRIGEFPSHGIGPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLD-----ARS 147 (305)
T ss_pred Cc-------------EEEeEecCCCcChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEe-----cCC
Confidence 32 12223333333344688999996444 44433221 122211111111100 000
Q ss_pred cccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEeCCCCceeEEec-------CCCCCCeeEE
Q 039790 363 DELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG-------TVKIWDDRKSTPLAVLR-------PYDGHPVNCV 426 (1395)
Q Consensus 363 ~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg-------~IrIWDl~sg~~l~tl~-------~h~~~~V~sV 426 (1395)
..+.. ...+ .-|.-.|..+++..+| ..++..=..| .|-+|+ .+..+..+. .-.+ .|-+|
T Consensus 148 G~ll~-q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~-Y~gSI 222 (305)
T PF07433_consen 148 GALLE-QVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNG-YIGSI 222 (305)
T ss_pred Cceee-eeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCC-ceEEE
Confidence 11111 1223 3366789999999987 4444433332 134443 233333332 2233 79999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
+|+ .+|.++++++..-+.+.+||..++ .++........ +.++...++ ++++.
T Consensus 223 a~~----~~g~~ia~tsPrGg~~~~~d~~tg------------~~~~~~~l~D~-----------cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 223 AAD----RDGRLIAVTSPRGGRVAVWDAATG------------RLLGSVPLPDA-----------CGVAPTDDG-FLVSS 274 (305)
T ss_pred EEe----CCCCEEEEECCCCCEEEEEECCCC------------CEeeccccCce-----------eeeeecCCc-eEEeC
Confidence 999 899999888889999999999998 77766655432 134555555 66665
Q ss_pred eCCC
Q 039790 507 AKKN 510 (1395)
Q Consensus 507 s~Dg 510 (1395)
+...
T Consensus 275 G~G~ 278 (305)
T PF07433_consen 275 GQGQ 278 (305)
T ss_pred CCcc
Confidence 5433
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.9e-05 Score=91.58 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 039790 1002 EGKRLEASLG 1011 (1395)
Q Consensus 1002 e~~~lE~~l~ 1011 (1395)
.+++||.-|.
T Consensus 909 ~ik~Le~dlk 918 (1102)
T KOG1924|consen 909 QIKKLERDLK 918 (1102)
T ss_pred HHHHHHHHHH
Confidence 4666666654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.9e-05 Score=59.64 Aligned_cols=39 Identities=15% Similarity=0.451 Sum_probs=36.1
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
|++++++.+|.+ .|++|+|+ |++.+|++++ .|++|+|||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~----~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWS----PDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEE----TTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEe----cccccceeeC-CCCEEEEEC
Confidence 468899999998 99999999 9999999977 999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0042 Score=80.18 Aligned_cols=224 Identities=14% Similarity=0.195 Sum_probs=139.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC----CCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI----TEGPD 292 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl----~tg~~ 292 (1395)
+.|.++.|..++.-|+.+..+|.|.+-|..+........-.+.|.+++| ++|+.+++-.+.++++.+-+- -..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aasw-S~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASW-SPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEee-cCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 6899999999999999999999999999988876666667788999999 999999999998888876442 11111
Q ss_pred CCC----C-cccccceEE---EEE----------------Eec--CCCCCccEEEEeCCCCeEEEEEe----CCeEEEEE
Q 039790 293 EED----K-PQILGKIVV---AIQ----------------ILA--DGDSVHPRVCWHPHKQEILMLAI----GNRILKID 342 (1395)
Q Consensus 293 ~~~----~-~~~~~~~i~---~l~----------------~~~--~~~~~v~~v~~sp~~~~lla~g~----~~~ii~~d 342 (1395)
... + ...+..|.. .++ ..+ ..++.-+.|+|..+|.++.+... +.+-+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 100 0 000111111 111 000 01223456999999986665432 31444444
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCceeEE----e
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---LDGTVKIWDDRKSTPLAV----L 415 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg~~l~t----l 415 (1395)
++. +.-.. .-..-.+.=.+++|-|.| .++++-. .|+.|.+|. ++|-.-.. +
T Consensus 228 drE-g~Lns-------------------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 228 DRE-GALNS-------------------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPF 285 (1265)
T ss_pred ccc-chhhc-------------------ccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEe-cCCccccccccCC
Confidence 433 11000 000112233579999988 7777754 456799997 55533222 2
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEE---EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLIT---GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s---~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
..... .|..++|+ .++..|++ ++ ....|++|-+.+. .|-..+.+....
T Consensus 286 p~de~-~ve~L~Wn----s~sdiLAv~~~~~-e~~~v~lwt~~Ny----------hWYLKq~l~~~~ 336 (1265)
T KOG1920|consen 286 PLDEK-EVEELAWN----SNSDILAVVTSNL-ENSLVQLWTTGNY----------HWYLKQELQFSQ 336 (1265)
T ss_pred ccccc-chheeeec----CCCCceeeeeccc-ccceEEEEEecCe----------EEEEEEEEeccc
Confidence 22332 59999999 88888877 44 5666999998764 455555555544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00032 Score=77.43 Aligned_cols=246 Identities=14% Similarity=0.168 Sum_probs=139.9
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC-CCCCCcccccceEEE--EEEe--cCCCCCccEEEEeCCCC--e
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP-DEEDKPQILGKIVVA--IQIL--ADGDSVHPRVCWHPHKQ--E 328 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~-~~~~~~~~~~~~i~~--l~~~--~~~~~~v~~v~~sp~~~--~ 328 (1395)
..+.|+++.| ...|.||++|...|+|.+|.-.... |+..+ .+...-.. +... -.-+..+..+.|..+++ +
T Consensus 25 ead~ItaVef-d~tg~YlatGDkgGRVvlfer~~s~~ceykf--~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEF-DETGLYLATGDKGGRVVLFEREKSYGCEYKF--FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEe-ccccceEeecCCCceEEEeecccccccchhh--hhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 3457999999 8889999999999999999765432 11100 00000000 0000 01123466788876654 6
Q ss_pred EEEEEeCCeEEEEEcCCCC----------ccccccCCCCC---------ccCccc---cccceEEE-cccCCCeEEEEEe
Q 039790 329 ILMLAIGNRILKIDSNRVG----------KGERFSAEEPL---------KCPVDE---LINGVQLV-GKHDGEITELSMC 385 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~----------~~~~~s~~~~~---------~~~~~~---~~~~~~~l-~~h~~~V~slafs 385 (1395)
++.++.+..|.+|...... .+..+...+++ +|.-.+ ...+.++. ..|...|++++|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 8888888888888654320 00011111111 111111 11223334 5788999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.|. ..++++ .|=+|.+|++..-. -+..++.|.- .-|++..|+ |....++.-++..|.|++-|++..-
T Consensus 182 sD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFh----p~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 182 SDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFH----PEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred Cch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccC----HhHcceEEEecCCCcEEehhhhhhh
Confidence 986 566664 57789999976432 2334555642 157888887 6555444444579999999998430
Q ss_pred CCCCCCCcccccEEEEEeccCccccccccccc------ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFF------NQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~------~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
-+. .....+...-.. ....|| ..-+.|+++|++|++-+. .+|+|||++..+.
T Consensus 256 lcd--------n~~klfe~~~D~---v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 256 LCD--------NSKKLFELTIDG---VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hcc--------CchhhhhhccCc---ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 000 000011100000 011111 235789999999988764 6799999987654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.016 Score=70.72 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=121.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEE-EEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTD-MAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~s-laf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++..++.++.+|.++-+|..+|+.. .... .+.+.+ ..+ .+..++.+..+|.|+.+|..+|+....+.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--- 191 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--- 191 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC-CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC---
Confidence 4566778888999999999988533 2222 222322 122 245667788899999999999983322210000
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC--CC---Cc------cCccc-cccceEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE--EP---LK------CPVDE-LINGVQLV 372 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~--~~---~~------~~~~~-~~~~~~~l 372 (1395)
.+.. ..... ..+ .++.++++..++.++.++...... .|... .+ .. ..... ...+...+
T Consensus 192 -~~~~-~~~~s--P~v----~~~~v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 192 -SLTL-RGESA--PAT----AFGGAIVGGDNGRVSAVLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred -cccc-cCCCC--CEE----ECCEEEEEcCCCEEEEEEccCChh--hheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 0000 00000 011 123455555556666555432111 11100 00 00 00000 00011111
Q ss_pred cccCCCeEEEEE-------e----------cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC
Q 039790 373 GKHDGEITELSM-------C----------QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 373 ~~h~~~V~slaf-------s----------pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
....+.+.++.. . ..+ ..|+.++.||.|..+|..+|+.+.....-.+....+..+.
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~------ 334 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYGSVNDFAVDG-GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY------ 334 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCCCccCcEEEC-CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE------
Confidence 112222222221 0 122 4666777889999999988887665432211123333332
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
+.+|+.+. .||.|.++|..+| +.+..++........ .-.+ . +..|+.++.||.|+.+
T Consensus 335 ~g~l~v~~-~~G~l~~ld~~tG------------~~~~~~~~~~~~~~s--------~P~~-~-~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 335 NGYLVVGD-SEGYLHWINREDG------------RFVAQQKVDSSGFLS--------EPVV-A-DDKLLIQARDGTVYAI 391 (394)
T ss_pred CCEEEEEe-CCCEEEEEECCCC------------CEEEEEEcCCCccee--------CCEE-E-CCEEEEEeCCceEEEE
Confidence 34555544 8999999999988 776666543322111 1112 2 3467777889999988
Q ss_pred Ec
Q 039790 516 HM 517 (1395)
Q Consensus 516 dl 517 (1395)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 64
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.039 Score=67.27 Aligned_cols=224 Identities=9% Similarity=0.160 Sum_probs=122.9
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEECCCCCCC--CCCccc--ccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 256 HTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNITEGPDE--EDKPQI--LGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl~tg~~~--~~~~~~--~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
+.+.|+++.+ ..++|+..- .+..+.+--+...... .....+ .+..+..+.+.+..+..+ .+++.
T Consensus 84 ~~d~isda~~---t~~~i~~s~~~~~~lt~v~~~k~~~~~~~~~ekls~~d~ki~~~~ipg~~~rr~--------~r~l~ 152 (545)
T PF11768_consen 84 ISDTISDAVI---TDSFILLSFLEQNKLTFVQFTKKVDNSPKRPEKLSALDPKISYVDIPGPKGRRL--------ERHLS 152 (545)
T ss_pred ccccccceEe---cCCEEEEEEcCCCeEEEEEeecCCCCCccChhhccccCceEEEEECCCCCCCcc--------ceeEe
Confidence 4567888888 334555555 6777777665543210 000000 011111222222211111 12344
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCC----CccCcccccc-ceEE--EcccCCCeEEEEEecCCCcEEEEE----eCCC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEP----LKCPVDELIN-GVQL--VGKHDGEITELSMCQWLTTRLASA----SLDG 399 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~----~~~~~~~~~~-~~~~--l~~h~~~V~slafspdg~~~LaSg----s~Dg 399 (1395)
.....+-+++||.........|++-.. -.+.+..... .+.. +........++.|+-..++.+.+. +.+|
T Consensus 153 ~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g 232 (545)
T PF11768_consen 153 VNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG 232 (545)
T ss_pred eccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC
Confidence 444566778898877666555544210 0111111111 1111 111234456777876554555543 2344
Q ss_pred c----EEEEeCCCCc--eeE--EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 400 T----VKIWDDRKST--PLA--VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 400 ~----IrIWDl~sg~--~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
. -.+|++...+ ++. .+ .... .|.+++++ |+...|+.|+ .||.|.+||...+
T Consensus 233 ~~~~d~ciYE~~r~klqrvsvtsi-pL~s-~v~~ca~s----p~E~kLvlGC-~DgSiiLyD~~~~-------------- 291 (545)
T PF11768_consen 233 EPSADSCIYECSRNKLQRVSVTSI-PLPS-QVICCARS----PSEDKLVLGC-EDGSIILYDTTRG-------------- 291 (545)
T ss_pred CceeEEEEEEeecCceeEEEEEEE-ecCC-cceEEecC----cccceEEEEe-cCCeEEEEEcCCC--------------
Confidence 3 3467765443 222 23 3444 79999999 9999999977 9999999998765
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+..+.- ..+....++|+|+|.+++.|+..|.+.+||+..+
T Consensus 292 ~t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 292 VTLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eeeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 111111 1223346999999999999999999999998764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00072 Score=77.48 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
...+.+|...|.+++|+|....++..++.+.+|+|.|+++..++..+..|. .+++++|. -|....+.+|..+|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~--~~wSC~wD----lde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN--QIWSCCWD----LDERHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC--Cceeeeec----cCCcceeEEeccCce
Confidence 456778889999999999984589999999999999999999999999884 79999998 777888888889999
Q ss_pred EEEEECCCCCC
Q 039790 449 LKIWASAEEEG 459 (1395)
Q Consensus 449 I~IWDl~tg~~ 459 (1395)
|.|||++..++
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999998743
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0025 Score=77.98 Aligned_cols=210 Identities=15% Similarity=0.152 Sum_probs=124.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
|...|.--+++..++||+.|+.-|.+++|+-.++....++ +-.+.+..+.. +.+..++|.|+..|.|.|+.+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe-cchhHhhhhhcCCceEEeehhhccCC
Confidence 3445555567888999999999999999999998644443 34455555666 77888899999999999999887431
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...+..-.....|...|++++|++++..++++-+.|.+........ ..|. ...+.+
T Consensus 111 --------~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~---~~~~-------------~~~q~i 166 (726)
T KOG3621|consen 111 --------RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR---QAFL-------------SKSQEI 166 (726)
T ss_pred --------CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh---hhhc-------------ccccee
Confidence 1111111222336889999999999999998888888877655331 0000 012333
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
-.-++.|..+.+.. + .+|++...- ..+++...+...+.-+ ..++-.-...+|-+.......-.+.|+ . --.|+
T Consensus 167 l~~ds~IVQlD~~q-~-~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-R-PG~Rl 240 (726)
T KOG3621|consen 167 LSEDSEIVQLDYLQ-S-YLLVSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-R-PGLRL 240 (726)
T ss_pred eccCcceEEeeccc-c-eehHhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-c-CCCce
Confidence 34567788888765 2 444444332 2344444332111111 011102345566532211133344444 3 33788
Q ss_pred EECC
Q 039790 452 WASA 455 (1395)
Q Consensus 452 WDl~ 455 (1395)
|..+
T Consensus 241 Wead 244 (726)
T KOG3621|consen 241 WEAD 244 (726)
T ss_pred EEee
Confidence 8765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0043 Score=73.74 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred EEeccCCCccCcccccceeeeeCC---------CCCEEEEEEecCCCEEEEEEc-----------CCeEEEEECCCCc-e
Q 039790 192 IDVRLDGEVQPQLEVTPITKYISD---------PGLVLGRQIAVNRNYICYGLK-----------LGNIRILNIITAL-R 250 (1395)
Q Consensus 192 v~~~~~G~~~~~~~~~~i~~l~~h---------~~~V~~va~Spdg~~LasGs~-----------DG~IrIWd~~~~~-~ 250 (1395)
+.+++.|..+..+....|..+.|. .-.|.-+.|||+.+||++=+. ...++|||+.+|. .
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk 295 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK 295 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence 344444544444444444444331 245778899999999998653 2579999999994 3
Q ss_pred EEecc--CCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 251 SLLRG--HTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 251 ~~l~~--H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
..|.. ....++ -..| +.|++++|.-..| +|.||+...
T Consensus 296 rsF~~~~~~~~~WP~frW-S~DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 296 RSFPVIKSPYLKWPIFRW-SHDDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred cceeccCCCccccceEEe-ccCCceeEEeccc-eEEEEecCc
Confidence 44433 222333 3567 8899999887775 677877654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.6e-05 Score=92.62 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=128.3
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC-
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR- 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg- 447 (1395)
.+.|..|+...+|++|+-+. +.|+.|+..|.|++|++.+|.......+|.. .|+-|.-+ -||..+++++++..
T Consensus 1094 w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs----~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS----VDGSTQLTSSSSSSP 1167 (1516)
T ss_pred chhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccccccccccc-cccccccc----CCcceeeeeccccCc
Confidence 45566788999999999987 8999999999999999999999999999997 99999988 89999888775655
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcc
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTR 527 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~ 527 (1395)
-..+|++... .....+|.... ++.|+.....-+.|+......+||+.++.. .
T Consensus 1168 lsaLW~~~s~-----------~~~~Hsf~ed~-------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~----l 1219 (1516)
T KOG1832|consen 1168 LSALWDASST-----------GGPRHSFDEDK-------------AVKFSNSLQFRALGTEADDALLYDVQTCSP----L 1219 (1516)
T ss_pred hHHHhccccc-----------cCccccccccc-------------eeehhhhHHHHHhcccccceEEEecccCcH----H
Confidence 5689998643 23344444322 466666555555566666788999998653 2
Q ss_pred eeeeeeeecc---ccEEEEecCCCCcCcCCCCeEEEEEcCCCc-ee---eecccceEEecCCCCC--eecccCCCceEEE
Q 039790 528 MDYIAEFTVT---MPILSLTGTTTDASPDGEHIVQIYCVQTQA-IQ---QYALDLSQCLPPPLEN--AELEKTDSNATRA 598 (1395)
Q Consensus 528 ~~~i~~f~~~---~~ils~~~~~~d~~~s~dg~V~lWdv~t~~-i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~i 598 (1395)
..|+..-... ....+|... |.+.-.|| .+||+.... |. ++.... .-.|.+.+ +.+- + .|
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~--D~LIlndG--vLWDvR~~~aIh~FD~ft~~~--~G~FHP~g~eVIIN-S-----EI 1287 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPC--DTLILNDG--VLWDVRIPEAIHRFDQFTDYG--GGGFHPSGNEVIIN-S-----EI 1287 (1516)
T ss_pred HHhcCcchhhhhhccccccCCC--cceEeeCc--eeeeeccHHHHhhhhhheecc--cccccCCCceEEee-c-----hh
Confidence 2222221111 122222222 22222344 379988752 22 111111 11133332 2221 1 39
Q ss_pred eecCCCCcceeeccCCC
Q 039790 599 FDVANPDGSASLESSHG 615 (1395)
Q Consensus 599 WD~~tg~~~~~l~g~~~ 615 (1395)
||+.|...++....-.+
T Consensus 1288 wD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred hhhHHHHHHhcCccccc
Confidence 99999998887763333
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=3e-05 Score=92.77 Aligned_cols=206 Identities=17% Similarity=0.251 Sum_probs=134.9
Q ss_pred CCCCEEEEEEecC--CCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEE----CCCcEEEE
Q 039790 215 DPGLVLGRQIAVN--RNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASAS----VDGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spd--g~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs----~DgtV~IW 285 (1395)
....+.|+++..+ ..+++.|..+|.|-+-.+.... .....+|....++++|..-|.++||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4567888887764 4588999999999998877642 3456678889999999777778888773 35679999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.++-.. +.....+.........++||..+...++++.....+.++|.+.....
T Consensus 135 di~s~ltv---------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------- 189 (783)
T KOG1008|consen 135 DINSLLTV---------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------- 189 (783)
T ss_pred ecccccCC---------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----------------
Confidence 99987310 11122233333444558999977666666666667777776532110
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCC-ceeEEecCCCCC----CeeEEEEeecCCCCCc-E
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD-DRKS-TPLAVLRPYDGH----PVNCVTFLIGPHPQHI-V 438 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD-l~sg-~~l~tl~~h~~~----~V~sV~fs~~~~pdg~-~ 438 (1395)
.. .-.+..+..+...|..++++++-+ ||.|-+|| .++- .++..+. |... .+..++|+ |... .
T Consensus 190 ---~~--svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~-~~~N~~~~~l~~~ayc----Ptrtgl 258 (783)
T KOG1008|consen 190 ---VS--SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL-RNENKKPKQLFALAYC----PTRTGL 258 (783)
T ss_pred ---hh--hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh-hCCCCcccceeeEEec----cCCcch
Confidence 00 113345667888886657888766 99999999 4443 3333333 2221 48999999 4433 3
Q ss_pred EEEEecCCCeEEEEECCC
Q 039790 439 LITGGPLNRELKIWASAE 456 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~t 456 (1395)
+++.....++|+++|+..
T Consensus 259 la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccCcceEEEecccc
Confidence 444444668999999864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.1 Score=57.26 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
..+++.|+..|.+.-.|..+|.+.--.--..+|-+-+. - -|++++.|+..|.+++.+..+|... ..+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~-v-vgdfVV~GCy~g~lYfl~~~tGs~~-----------w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI-V-VGDFVVLGCYSGGLYFLCVKTGSQI-----------WNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE-E-ECCEEEEEEccCcEEEEEecchhhe-----------eee
Confidence 46788888888888888888865433333445555444 1 4788999999999999999998611 111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~ 347 (1395)
... +..-.+....++++.++.+..++..+.+|..+.+
T Consensus 90 ~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 90 VIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeh---hhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 111 1122244566788888888889999999886543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=73.98 Aligned_cols=208 Identities=10% Similarity=0.101 Sum_probs=134.9
Q ss_pred CEEEEeCcCCCCCeeee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC-CEEEEEEcCC-----eE
Q 039790 169 PVRLRSSKVPKGRHLIG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR-NYICYGLKLG-----NI 240 (1395)
Q Consensus 169 ~Vrlwd~~sp~Gr~L~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG-----~I 240 (1395)
.|.+|+ +..|+.+.| ++.||.+..+. ..++.|..+...|....|.-++ .+|++-+.|+ .|
T Consensus 27 ~isc~~--s~~~~vvigt~~G~V~~Ln~s~----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 27 AISCCS--SSTGSVVIGTADGRVVILNSSF----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred ceeEEc--CCCceEEEeeccccEEEecccc----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 677777 334555544 56677775542 3445566666553333344444 6787777664 58
Q ss_pred EEEECCCC-------ce--EEeccC-----CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 241 RILNIITA-------LR--SLLRGH-----TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 241 rIWd~~~~-------~~--~~l~~H-----~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|||++.- +. +.+.+| ..++.+++. +.+-..+|+|-.||.|..+.-+--+. ....
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RD----------rgsr 163 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRD----------RGSR 163 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhc----------cccc
Confidence 99998752 22 123332 456888999 78888999999999999885332110 1113
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..........|+.+.+..++..++.+.....+..+...... . ...++..|+..++|.+|++
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p------------------~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P------------------SLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c------------------ceeeeccCCccceeeecCC
Confidence 45556678899999999999886666667767666654211 0 1455778899999999998
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDG 420 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~ 420 (1395)
.. .-|++++ +..|.+||.....+...|. ||..
T Consensus 225 ~t-~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 225 GT-YQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CC-ccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 65 3344444 4569999988777777777 6653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=67.73 Aligned_cols=210 Identities=11% Similarity=0.089 Sum_probs=118.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEE-----cCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEEC--
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGL-----KLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASV-- 278 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs-----~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-- 278 (1395)
.-+.|.||. .||+||++|++.= ..|.|-|||...+ .+..|..|.-.-..|.+ .+||..|+.+-.
T Consensus 48 ~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l-~pDG~tLvVANGGI 120 (305)
T PF07433_consen 48 PGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLL-MPDGETLVVANGGI 120 (305)
T ss_pred CCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEE-cCCCCEEEEEcCCC
Confidence 345667773 5999999998853 3489999999954 45677777766677888 889977776632
Q ss_pred -----CCcEEEEECCCCCCCCCC-cccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCe------EEEEEcCC
Q 039790 279 -----DGRFFIWNITEGPDEEDK-PQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNR------ILKIDSNR 345 (1395)
Q Consensus 279 -----DgtV~IWdl~tg~~~~~~-~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~------ii~~d~~~ 345 (1395)
.|..++ |+.+......+ ...++..+....+. ..+.-.+..+++..++.-++..-..+. ++-.....
T Consensus 121 ~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 121 ETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred ccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 122222 12211100000 01122233332222 234556677788877753333322111 11111100
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s 425 (1395)
. ....+... ......-.++|-+|+|+.++....+|+-..+.+.+||..++..+....-.+ +..
T Consensus 200 ~-~~~~~~~p-------------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D---~cG 262 (305)
T PF07433_consen 200 G-ALRLLPAP-------------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD---ACG 262 (305)
T ss_pred C-cceeccCC-------------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc---eee
Confidence 0 00000000 001123457899999999985455677788999999999999988876553 677
Q ss_pred EEEeecCCCCCcEEEEEecCCCeE
Q 039790 426 VTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
|+-. .++ +++++| .|.+
T Consensus 263 va~~----~~~-f~~ssG--~G~~ 279 (305)
T PF07433_consen 263 VAPT----DDG-FLVSSG--QGQL 279 (305)
T ss_pred eeec----CCc-eEEeCC--CccE
Confidence 7775 555 777755 4543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=82.40 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++..++.|+....+..+|+.+.+...... ....|+-|+. ++++|.+|...|+|.+-|..+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~-------------- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE-------------- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCc--------------
Confidence 45566667666677778888876544332 2334766766 67888888888999888887654
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
. ++.+..|.+.|.++...
T Consensus 209 ~--------------------------------------------------------------iht~~aHs~siSDfDv~ 226 (1118)
T KOG1275|consen 209 T--------------------------------------------------------------IHTFDAHSGSISDFDVQ 226 (1118)
T ss_pred e--------------------------------------------------------------eeeeeccccceeeeecc
Confidence 0 34556688888777664
Q ss_pred cCCCcEEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECC
Q 039790 386 QWLTTRLASASL---------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 386 pdg~~~LaSgs~---------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
| ++|++|+. |..|+|||+|.-+.+.-+.-+.+ ..-+.|. |.- ..++++ +..|.+.+-|..
T Consensus 227 --G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~----Psl~t~~~V~-S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 227 --G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFH----PSLTTRLAVT-SQSGQFQFVDTA 296 (1118)
T ss_pred --C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhc----ccccceEEEE-ecccceeecccc
Confidence 4 78888775 67799999998877776666654 3556665 433 344443 478999998844
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+-.+ .....+..+... -....+.+|++|..|+.|..+|.|.+|.
T Consensus 297 ~lsN----------P~~~~~~v~p~~-------s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSN----------PPAGVKMVNPNG-------SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCC----------CccceeEEccCC-------CcceeEEecCCCceEEEecccCcEeeec
Confidence 3200 111222222111 0123588999999999999999999998
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.016 Score=65.01 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=106.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.++.++++++.++.|+.||..+|.+. .+.. .+.+..... .++..++.++.|+.|+.+|..+|+. +
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~tG~~-----------~ 99 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--VDGGRVYVGTSDGSLYALDAKTGKV-----------L 99 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--EETTEEEEEETTSEEEEEETTTSCE-----------E
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee--ecccccccccceeeeEecccCCcce-----------e
Confidence 36677888889999999999998533 3322 222221112 2455677777889999999999882 2
Q ss_pred EEEEEec-CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe-EEE
Q 039790 305 VAIQILA-DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI-TEL 382 (1395)
Q Consensus 305 ~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V-~sl 382 (1395)
....... ..............+..+++...++.++.++.......-.+....+ .....+. ....+ ..+
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~---------~~~~~~~-~~~~~~~~~ 169 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP---------RGSSPIS-SFSDINGSP 169 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT----------SS--EE-EETTEEEEE
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC---------CCCccee-eecccccce
Confidence 2211111 1111111222222366677777788888888643221000000000 0000000 00111 222
Q ss_pred EEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 383 SMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+. ++ .+..++.++. +.+ |+.+++.+.... .. .+..+.. .++..|+.++ .++.|.+||++++
T Consensus 170 ~~~-~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--~~~~~~~-----~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 170 VIS-DG--RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--GIYSLPS-----VDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp ECC-TT--EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---ECECEE-----CCCTEEEEEE-TTTEEEEEETTTT
T ss_pred EEE-CC--EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--CccCCce-----eeCCEEEEEe-CCCEEEEEECCCC
Confidence 222 33 5666666775 555 999998775444 22 3444222 5677777766 8999999999998
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.046 Score=66.74 Aligned_cols=271 Identities=11% Similarity=-0.000 Sum_probs=137.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-E--eccCCC--------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-L--LRGHTQ--------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~--l~~H~~--------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.+..|++++.+|.|.-+|..+|+.. . +..... .+ ..+.. ++..++.++.+|.|+.+|..+|+...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 3557777778888888898887532 1 111000 11 11233 35567778889999999999998443
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLV 372 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l 372 (1395)
.+... + ........ .++.+++...++.++.+|...... . |..... ....
T Consensus 145 ~~~~~-~-------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~--~-----------W~~~~~~~~~~~ 195 (394)
T PRK11138 145 QTKVA-G-------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV--K-----------WTVNLDVPSLTL 195 (394)
T ss_pred cccCC-C-------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE--e-----------eeecCCCCcccc
Confidence 32210 0 00000011 134566666667777777643221 1 111100 0000
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC---CC---eeEEEEeecCCCCCcEEEEEecCC
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG---HP---VNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~---~~---V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.+...++ .. + ..++.++.+|.+..+|..+|+.+..+..... .. ...+..+|. -.+..+++++ .+
T Consensus 196 ~~~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~--v~~~~vy~~~-~~ 265 (394)
T PRK11138 196 RGESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV--VVGGVVYALA-YN 265 (394)
T ss_pred cCCCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE--EECCEEEEEE-cC
Confidence 1111111 11 2 2466677889999999999987766542110 00 111111100 1234555545 78
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.+..+|..++ +.+-+..... .. .+. .++..|+.++.+|.|+.+|..+|+..-
T Consensus 266 g~l~ald~~tG------------~~~W~~~~~~--~~---------~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W-- 318 (394)
T PRK11138 266 GNLVALDLRSG------------QIVWKREYGS--VN---------DFA--VDGGRIYLVDQNDRVYALDTRGGVELW-- 318 (394)
T ss_pred CeEEEEECCCC------------CEEEeecCCC--cc---------CcE--EECCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 99999999988 3332222111 00 011 234556666778889888887764210
Q ss_pred ceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
....+.......|++ .+.. -.+.+.+|.|+++|..+|++.
T Consensus 319 ~~~~~~~~~~~sp~v--~~g~-l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 319 SQSDLLHRLLTAPVL--YNGY-LVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred cccccCCCcccCCEE--ECCE-EEEEeCCCEEEEEECCCCCEE
Confidence 000011111122322 1111 112466889999999999874
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.028 Score=68.45 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=62.2
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
.....|.|++++|+. ..|+.|+.||.|.+||...+..... -.. -.++.++|. |+|..+++++ .-|.|.+||
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~--ka~-~~P~~iaWH----p~gai~~V~s-~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLA--KAE-FIPTLIAWH----PDGAIFVVGS-EQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeee--eec-ccceEEEEc----CCCcEEEEEc-CCceEEEEE
Confidence 477889999999998 8999999999999999877743332 222 268999997 9999999866 889999999
Q ss_pred CCCC
Q 039790 454 SAEE 457 (1395)
Q Consensus 454 l~tg 457 (1395)
+...
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 9765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0042 Score=77.03 Aligned_cols=190 Identities=8% Similarity=0.148 Sum_probs=120.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
.+.+.|+++ .++.|+-|..+|.|++++..... .....|... .-.|.++.+++.||
T Consensus 39 ~D~is~~av---~~~~~~~GtH~g~v~~~~~~~~~----------------~~~~~~s~~------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 39 NDAISCCAV---HDKFFALGTHRGAVYLTTCQGNP----------------KTNFDHSSS------ILEGEYVASCSDDG 93 (846)
T ss_pred hhHHHHHHh---hcceeeeccccceEEEEecCCcc----------------ccccccccc------ccCCceEEEecCCC
Confidence 356778888 57899999999999999987431 001111111 33566666666666
Q ss_pred eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCC---CC
Q 039790 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW----LTTRLASASLDGTVKIWDDR---KS 409 (1395)
Q Consensus 337 ~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd----g~~~LaSgs~Dg~IrIWDl~---sg 409 (1395)
++++.-...... ...+ ....++.+|+++|+ ..+.+++|+.-| +.++.-+ ..
T Consensus 94 kv~I~sl~~~~~--------------------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 94 KVVIGSLFTDDE--------------------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred cEEEeeccCCcc--------------------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 677665433221 1111 24567899999998 225899999988 7776522 11
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
..+ .+..-.| +|.++.|. |.+++-+. |--|+|||+.++ +.+..+......+ ....
T Consensus 152 ~~v-~l~~~eG-~I~~i~W~------g~lIAWan--d~Gv~vyd~~~~------------~~l~~i~~p~~~~---R~e~ 206 (846)
T KOG2066|consen 152 DSV-VLSEGEG-PIHSIKWR------GNLIAWAN--DDGVKVYDTPTR------------QRLTNIPPPSQSV---RPEL 206 (846)
T ss_pred cce-eeecCcc-ceEEEEec------CcEEEEec--CCCcEEEecccc------------ceeeccCCCCCCC---Cccc
Confidence 222 3434455 99999995 77888754 555999999887 5555555544332 2334
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+...+.|.++.++++. +..+|+|..+..+
T Consensus 207 fpphl~W~~~~~LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 207 FPPHLHWQDEDRLVIG--WGDSVKICSIKKR 235 (846)
T ss_pred CCCceEecCCCeEEEe--cCCeEEEEEEecc
Confidence 4456888777666553 3456888888743
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.15 Score=55.95 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
-|++++.|++.|.+++.+.++|. ...+.. -+.|.+-+-...++.+|..|+.|++.+..|.++..+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c------------- 127 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC------------- 127 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccce-------------
Confidence 47889999999999999999994 333332 233443333356899999999999999999998763
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR 345 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~ 345 (1395)
+....-......+=+..+-...++++...+.++......
T Consensus 128 -VykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 128 -VYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred -EEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 222222222222334455455677777777777765544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.074 Score=63.90 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=103.3
Q ss_pred ecCCCEEEEEE---------cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 225 AVNRNYICYGL---------KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 225 Spdg~~LasGs---------~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|||+++++... ..+.+.|||+.++....+......+....| +|+|+.|+-.. ++.|+++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~-sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKW-SPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccccccee-ecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777777632 246899999999987777666778999999 99999998886 57899999877641100
Q ss_pred CcccccceEEEEEE--e-cCCCCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 296 KPQILGKIVVAIQI--L-ADGDSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~--~-~~~~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
-......+...+.- . ..--..-..+.|+|++.+|+....+.. +..+.. ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~--------------------------~~ 132 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL--------------------------PD 132 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE--------------------------EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe--------------------------ec
Confidence 00000000000000 0 000122346889999998876654432 211111 11
Q ss_pred EcccCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--Ee---cCCCCCCeeEEEEeecCCCCCc-EEEEE
Q 039790 372 VGKHDG---EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VL---RPYDGHPVNCVTFLIGPHPQHI-VLITG 442 (1395)
Q Consensus 372 l~~h~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl---~~h~~~~V~sV~fs~~~~pdg~-~L~s~ 442 (1395)
...... .+..+.+-.-|. -... -.+.|+|+.+++... .. ..-. ..+..+.|. +++. .++.-
T Consensus 133 ~~~~~~~yp~~~~~~YPk~G~-~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~-~yl~~v~W~----~d~~~l~~~~ 202 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKAGD-PNPR----VSLFVVDLASGKTTELDPPNSLNPQD-YYLTRVGWS----PDGKRLWVQW 202 (353)
T ss_dssp ESSSTESS-EEEEEE--BTTS----E----EEEEEEESSSTCCCEE---HHHHTSS-EEEEEEEEE----ETTEEEEEEE
T ss_pred cCCccccCCcccccccCCCCC-cCCc----eEEEEEECCCCcEEEeeeccccCCCc-cCcccceec----CCCcEEEEEE
Confidence 111111 344555433331 1111 136678988886532 11 1222 378999999 8888 44443
Q ss_pred ecCCC---eEEEEECCCC
Q 039790 443 GPLNR---ELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg---~I~IWDl~tg 457 (1395)
.+.+. .+.++|..++
T Consensus 203 ~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp EETTSTEEEEEEEEECTT
T ss_pred cccCCCEEEEEEEECCCC
Confidence 32332 4567777666
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.072 Score=60.22 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=116.0
Q ss_pred eeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEE--eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~--l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+.+-...+.+++|.++.+ ++|+....+.|..++..+..+.. +.+ .+..-+|++ ..++.++++--.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y-~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-FGDYEGITY-LGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE--STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-CCCceeEEE-ECCCEEEEEEcCCCcEEEEEEe
Confidence 334446699999999755 66666778899888986554333 344 356889999 6777777666568999999996
Q ss_pred CCCCCCCCcccccceEEEEE--EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQ--ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~--~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
...... .......+. +...+....-.++|++.++.++++-..+-..++........ ..+......
T Consensus 95 ~~~~~~-----~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--------~~~~~~~~~ 161 (248)
T PF06977_consen 95 DDTTSL-----DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--------FDLFVSDDQ 161 (248)
T ss_dssp ---TT-------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--------S--EEEE-H
T ss_pred cccccc-----chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--------cceeecccc
Confidence 543110 011112222 22234455778999999999988876654333332211000 000000000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC--------CCeeEEEEeecCCCCCcE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG--------HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~ 438 (1395)
........-..+.+++|+|..+++++....+..|.++| .+|+.+..+.-..+ ...-.|+|. ++|..
T Consensus 162 -~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d----~~G~L 235 (248)
T PF06977_consen 162 -DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD----PDGNL 235 (248)
T ss_dssp -HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-----TT--E
T ss_pred -ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC----CCCCE
Confidence 00001123345789999998878888888999999999 78887776653321 146789998 88877
Q ss_pred EEEEecCCCeEEEE
Q 039790 439 LITGGPLNRELKIW 452 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IW 452 (1395)
.++ + .-+..++|
T Consensus 236 YIv-s-EpNlfy~f 247 (248)
T PF06977_consen 236 YIV-S-EPNLFYRF 247 (248)
T ss_dssp EEE-E-TTTEEEEE
T ss_pred EEE-c-CCceEEEe
Confidence 766 4 55555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0042 Score=76.54 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE-eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSL-LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~-l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+++++|+|..-.|+.|-.-|.+.+|...+.+.++ ...|...|..+.| +++|..|+|+..-|.|.+|.....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~w-S~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDW-SHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEe-cCCCCeEEEcCCCceeEEEEeeec
Confidence 4568899999999999999999999998876554 4569999999999 999999999999999999998743
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=80.11 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=104.6
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECC---------CcEEEEECCCCCCC
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVD---------GRFFIWNITEGPDE 293 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---------gtV~IWdl~tg~~~ 293 (1395)
.-.+++++++|...|+|.+-|.++. .++++..|++.|.++.. .|++|++||.. .-|+|||++.-+.+
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 3457899999999999999999986 58899999999999877 79999999874 45799999986622
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. .+.+..+. .-+.|+|.=. .++++...+....++....... ..++..+
T Consensus 260 ~-----------PI~~~~~P----~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP----------------~~~~~~v 308 (1118)
T KOG1275|consen 260 S-----------PIQFPYGP----QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP----------------PAGVKMV 308 (1118)
T ss_pred C-----------CcccccCc----hhhhhcccccceEEEEecccceeeccccccCCC----------------ccceeEE
Confidence 1 11111111 2356666544 4455555666666665433221 1113334
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWD 405 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD 405 (1395)
......+..+++++.+ ..++.|..+|.|.+|-
T Consensus 309 ~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 4445569999999998 8999999999999997
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.028 Score=72.47 Aligned_cols=150 Identities=11% Similarity=0.174 Sum_probs=96.2
Q ss_pred CCCCEEEEE-ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-----CCCeEEEEEeCCeEEEE
Q 039790 268 EDVHLLASA-SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-----HKQEILMLAIGNRILKI 341 (1395)
Q Consensus 268 ~dg~~LaSg-s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-----~~~~lla~g~~~~ii~~ 341 (1395)
.+.++|+.- .....|+-.|+..|+ ++..+.+.. ...+..++-.. .....|++-+++.+++|
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GK-----------VV~eW~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGK-----------VVEEWKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCc-----------EEEEeecCC--CcceeEecccccccccCCCceEEEECCCceEEe
Confidence 344454443 455788889999887 333333221 12233332221 13457888888999999
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDG 420 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~ 420 (1395)
|.+-.+.... +.. .+.+ .......|++-+.+| +||.|+.+|.||+|| +.|..-+ .|.+-..
T Consensus 558 DpR~~~~k~v-----------~~~---~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLV-----------DSQ---SKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCcee-----------ecc---cccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhhhhcCCCCCC
Confidence 9875432100 100 1111 244567888888776 899999999999999 4453333 4445554
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+|..|+.+ .||+||+++| +..|.|++..
T Consensus 620 -pI~~iDvt----~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 620 -PIIGIDVT----ADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred -CeeEEEec----CCCcEEEEee--cceEEEEEEe
Confidence 99999999 9999999977 7889999874
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.065 Score=65.58 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=104.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+.+..+.+..+.|.++.|+.+.+++ .-..||.+++||+.+.. .....-....|....| ..+|-.+++ .+
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~-~~~GivvLt--~~ 146 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF-YKNGIVVLT--GN 146 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCccccccccccc-CCCCEEEEC--CC
Confidence 4555555555899999999876655 55689999999987544 1111111222333344 335533333 34
Q ss_pred CcEEEEECCCCC-CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 280 GRFFIWNITEGP-DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 280 gtV~IWdl~tg~-~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+.|++.+-.... .....+...+. ...............++.+....+....++.+..++.....
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~----~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----------- 211 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGL----WTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----------- 211 (410)
T ss_pred CeEEEEeCccccchhhccccCCCc----ccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----------
Confidence 445444322211 00000000000 00000000110013345555555666666666656543210
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
.+ ...+.+..|++||+| ++||.-..+|.+.|+...-.+.+..+..........+.|+
T Consensus 212 ------------~i-~~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 212 ------------QI-DSDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred ------------cc-cCCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 01 134579999999999 7999999999999998776777777765533367888887
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.075 Score=64.41 Aligned_cols=245 Identities=13% Similarity=0.111 Sum_probs=120.8
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------------------------------------------ceEEe
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA--------------------------------------------LRSLL 253 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------------------------------------------~~~~l 253 (1395)
.|+.+.|+.+..-|++|...|.|.||.+... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778889998888999999999988864321 01122
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-----CCCCCccEEEEeC----
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-----DGDSVHPRVCWHP---- 324 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-----~~~~~v~~v~~sp---- 324 (1395)
....+.|++++. + |--+++.|..+|.+.|.|++... .+....+.. .....++++.|.-
T Consensus 83 ~~~~g~vtal~~-S-~iGFvaigy~~G~l~viD~RGPa-----------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 83 DAKQGPVTALKN-S-DIGFVAIGYESGSLVVIDLRGPA-----------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTE-----------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred eccCCcEeEEec-C-CCcEEEEEecCCcEEEEECCCCe-----------EEeeccccccccccccccCeeEEEEEEEecC
Confidence 334689999998 4 56699999999999999997544 121111111 1334455666641
Q ss_pred -CC---CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE-EecCCC----------
Q 039790 325 -HK---QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS-MCQWLT---------- 389 (1395)
Q Consensus 325 -~~---~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla-fspdg~---------- 389 (1395)
++ -.++++...|.++.|...-...+ .|. . ........+.+.|..+. |+.+.+
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g-~f~------v------~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNG-RFS------V------QFAGATTNHDSPILSIIPINADTGESALATISAM 216 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG--EE------E------EEEEEE--SS----EEEEEETTT--B-B-BHHHH
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCC-ceE------E------EEeeccccCCCceEEEEEEECCCCCcccCchhHh
Confidence 11 14555566677766655321111 111 0 00111223555665555 322211
Q ss_pred ----------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC-CCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 390 ----------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 390 ----------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~-~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.+++. ..+..|||+...+.+..+......- .+..++|.+.. ...+..|++-- .||.|++|.+-.-
T Consensus 217 ~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~L- 292 (395)
T PF08596_consen 217 QGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSL- 292 (395)
T ss_dssp HGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--
T ss_pred hccccCCCcCcEEEE-EcccceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCc-
Confidence 13444 4467799999988887766552211 34445553100 02345555555 8999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.+..+........ . ......++.+|.+++..+.
T Consensus 293 -----------kei~~~~l~~~~d~----~-~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 293 -----------KEIKSVSLPPPLDS----R-RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ------------EEEEEE-SS---H----H-HHTT-EE-TTS-EEEE-SS
T ss_pred -----------hHhhcccCCCcccc----c-cccccEECCCCCEEEEeCc
Confidence 77777766432111 1 1113566778877665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=61.36 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--c-------C---------CCCeEEEEEeeCCCCEEEEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--G-------H---------TQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~-------H---------~~~V~slaf~s~dg~~LaSgs 277 (1395)
...+....|||+|++||... ++.|.+++..++....+. | - -+.-..+-| +||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W-Spd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW-SPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE-CCCCCEEEEEE
Confidence 46677889999999999986 579999998877433222 2 0 112345778 99999988875
Q ss_pred CC
Q 039790 278 VD 279 (1395)
Q Consensus 278 ~D 279 (1395)
.|
T Consensus 120 ~d 121 (353)
T PF00930_consen 120 FD 121 (353)
T ss_dssp EE
T ss_pred EC
Confidence 54
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.12 Score=64.71 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=77.1
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCC-----CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRK-----STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~s-----g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
++| ++... .+++|.++|.++ ...+..+.--. ....|.++ |||++++++|..+.+|.|.|+.+.+.+
T Consensus 286 kdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vS----PDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 286 KAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTS----PDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCC--CccceEEC----CCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 455 44443 367899999998 35555555333 68999999 999999999988999999999876211
Q ss_pred CCCCCcc-cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 461 LLPSDIE-SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 461 ~~~~~~~-~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+. ...+ ....+.+...-.+. ....|..+|....+-.-|..|-.|++..
T Consensus 357 ~~-~~~~~~~~vvaevevGlGP----------LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FD-GKIKPRDAVVAEPELGLGP----------LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hh-ccCCccceEEEeeccCCCc----------ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 10 0000 01122333321111 1478899999888888999999999976
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.29 Score=58.12 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=104.0
Q ss_pred EEEecCCCEEEEEEc-C--CeEEEEECCCCceEEeccCCCC-eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 222 RQIAVNRNYICYGLK-L--GNIRILNIITALRSLLRGHTQR-VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 222 va~Spdg~~LasGs~-D--G~IrIWd~~~~~~~~l~~H~~~-V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
-+|..||+.|+.++. | ..+.+.|+.++.+..|..+.+. .....+ +++++.|+-......|+-.|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~-s~~~~~~~Yv~~~~~l~~vdL~T~e~----- 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFL-SPDDRALYYVKNGRSLRRVDLDTLEE----- 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--E-----
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEE-ecCCCeEEEEECCCeEEEEECCcCcE-----
Confidence 357889977766654 4 5677789999988888766532 334555 67778877666667899999998761
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCc----cccccCCCCCccCccccccc-eEE
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGK----GERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~----~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
-.++...+..+-...|..+ +...+++.. +..-+.....+ .+.|......++..-++..+ ...
T Consensus 115 ---------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e---~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 115 ---------RVVYEVPDDWKGYGTWVANSDCTKLVGIE---ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp ---------EEEEE--TTEEEEEEEEE-TTSSEEEEEE---EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ---------EEEEECCcccccccceeeCCCccEEEEEE---EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 1222222333333444322 222222221 00000000000 00000000000000011111 333
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeC---CCc-EEEEeCCC-CceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEe--
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASL---DGT-VKIWDDRK-STPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGG-- 443 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~---Dg~-IrIWDl~s-g~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~G-- 443 (1395)
+..-..++.-+-|+|.++.+|+-|-. |.. -|||=+++ |.-.+.+..|. +..+.-=-|. +||..|.--+
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~----~DG~~i~y~~~~ 258 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV----PDGSTIWYDSYT 258 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-----TTSS-EEEEEEE
T ss_pred EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc----CCCCEEEEEeec
Confidence 33456678899999998777777654 332 36775543 33344443332 2134444577 8887665432
Q ss_pred --cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 444 --PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 444 --s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
..+..|.-+|+.++ ......... .+.-...++||.+++.-+.|.
T Consensus 259 ~~~~~~~i~~~d~~t~------------~~~~~~~~p-----------~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG------------ERRRLMEMP-----------WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp TTT--EEEEEE-TTT--------------EEEEEEE------------SEEEEEE-TTSSEEEEEE---
T ss_pred CCCCceEEEeeCCCCC------------CceEEEeCC-----------ceeeeEEcCCCCEEEecCCCC
Confidence 23446666777765 222111111 112356679999998877653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.59 Score=53.82 Aligned_cols=239 Identities=15% Similarity=0.215 Sum_probs=123.0
Q ss_pred cCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc-ccccce
Q 039790 226 VNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP-QILGKI 303 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~-~~~~~~ 303 (1395)
..++.|+.|+.+| |.+++.... ....+. +...|..|.. -++-+.|+.-+ ||.|+++++..-....... ....+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~v-l~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSV-LPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEE-ecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999988 899998332 222222 2233999998 55555555554 4999999998754221110 000000
Q ss_pred EEEEEEecCCCCCccEEE--EeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 304 VVAIQILADGDSVHPRVC--WHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~--~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
............+..++ -...+...++++....+.++........ |. ...+.+. -.+.+.+
T Consensus 81 -~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~--f~-------------~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 81 -RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS--FS-------------KLLKEIS-LPDPPSS 143 (275)
T ss_pred -ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc--cc-------------ceeEEEE-cCCCcEE
Confidence 00000001111122222 1234556777777777776654332110 00 1123332 4478899
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-----------CCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-----------GHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-----------~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
++|.. +.|+.|..++ ..+.|+.++.....+.... ..++..+.. +++.+|++ .|..-.
T Consensus 144 i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~Ll~---~~~~g~ 211 (275)
T PF00780_consen 144 IAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-----SDNEFLLC---YDNIGV 211 (275)
T ss_pred EEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-----CCceEEEE---ecceEE
Confidence 99983 5677776554 7889999876544442211 113444444 46667764 344444
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.|.... ..+ ...+...... ..+.+ ...+|++-.. +.|.||++.+|+
T Consensus 212 fv~~~G~----------~~r-~~~i~W~~~p----------~~~~~--~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 212 FVNKNGE----------PSR-KSTIQWSSAP----------QSVAY--SSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred EEcCCCC----------cCc-ccEEEcCCch----------hEEEE--ECCEEEEECC-CEEEEEECcCCc
Confidence 4444221 001 1233322211 12333 3346666554 559999999874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.093 Score=63.57 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=133.6
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCC---C-Ce-----------e---eeCceEEEEEeccCCCccCcccccceeeeeC
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPK---G-RH-----------L---IGNHSVYDIDVRLDGEVQPQLEVTPITKYIS 214 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~---G-r~-----------L---~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~ 214 (1395)
++.+....|+.+-..|.|-+|. |..+ | +. + .+...+.|+..+.+..+. -...+...+..
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~--~gf~P~~l~~~ 84 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFK-FGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK--EGFLPLTLLDA 84 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEE-EEE------------------S--GGGSS-SEEE-GGG--TT-S--EEEEEEEEE--
T ss_pred EecCCCceEEEEccCCcEEEEE-cccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc--cccCchhheec
Confidence 3444557889999999998887 3211 1 00 1 113345555444332211 12456666777
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE---Eecc------CCCCeEEEEEe----eCCC---CEEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS---LLRG------HTQRVTDMAFF----AEDV---HLLASASV 278 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~---~l~~------H~~~V~slaf~----s~dg---~~LaSgs~ 278 (1395)
..+.|++++.| |=-++|.|+.+|.+.|.|++...+. .+.. ....|+++.|. ..|+ -+|++|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 78999999997 5569999999999999999665321 2222 33468889883 1222 37889999
Q ss_pred CCcEEEEECCCCCCCCCCcccccce-EEEEEEecCCCCCccEEE-EeCCC--------------------CeEEEEEeCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKI-VVAIQILADGDSVHPRVC-WHPHK--------------------QEILMLAIGN 336 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~-i~~l~~~~~~~~~v~~v~-~sp~~--------------------~~lla~g~~~ 336 (1395)
.|.+.+|.+.-.. .+.+ +........+.+.+..++ ++.+. ..+++++...
T Consensus 164 ~G~v~~fkIlp~~--------~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 164 SGNVLTFKILPSS--------NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp TSEEEEEEEEE-G--------GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred CCCEEEEEEecCC--------CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 9999999986211 1111 122222223334444333 32221 2355555566
Q ss_pred eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe-----cCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC-----QWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 337 ~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs-----pdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
.+.++........ .+.+ .....+..+.|- ..+ ..|++-..+|.|++|.+-.-+.
T Consensus 236 ~irv~~~~~~k~~-------------------~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 236 DIRVFKPPKSKGA-------------------HKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEEE-TT---EE-------------------EEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--E
T ss_pred ceEEEeCCCCccc-------------------ceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchH
Confidence 6666544322110 1122 111122333342 233 7888999999999999999888
Q ss_pred eEEecCCCC---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 412 LAVLRPYDG---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 412 l~tl~~h~~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+..+..+.. ..+...+|+ .+|+.++-.| ...+.+|.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis----~~Gdi~~~~g--psE~~l~sv 334 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSIS----RNGDIFYWTG--PSEIQLFSV 334 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-----TTS-EEEE-S--SSEEEEEEE
T ss_pred hhcccCCCccccccccccEEC----CCCCEEEEeC--cccEEEEEE
Confidence 887765321 145667777 8888877755 445555544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.42 Score=58.70 Aligned_cols=199 Identities=12% Similarity=0.143 Sum_probs=103.4
Q ss_pred EEEEEecCCCEEEEE-EcCC----eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC-----------cEE
Q 039790 220 LGRQIAVNRNYICYG-LKLG----NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-----------RFF 283 (1395)
Q Consensus 220 ~~va~Spdg~~LasG-s~DG----~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-----------tV~ 283 (1395)
....+||||++||++ +..| .|+|+|+.+|....-.-....-..+.| ..+++.|+....|. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W-~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSW-SDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEE-CTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEE-eCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357899999999987 4444 499999999853321101111223999 78878776665443 378
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecC-CCCC-ccEEEEeCCCCeEEEEEeCCe----EEEEEcCCCCccccccCCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILAD-GDSV-HPRVCWHPHKQEILMLAIGNR----ILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~-v~~v~~sp~~~~lla~g~~~~----ii~~d~~~~~~~~~~s~~~~ 357 (1395)
.|++.++... ...++.. .... ...+.++.++.++++....+. +..++......
T Consensus 206 ~~~~gt~~~~------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~--------- 264 (414)
T PF02897_consen 206 RHKLGTPQSE------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS--------- 264 (414)
T ss_dssp EEETTS-GGG-------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT---------
T ss_pred EEECCCChHh------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC---------
Confidence 8888776411 1122322 2222 457888999988877665443 33333322100
Q ss_pred CccCccccccceEEEcccCCCe-EEEEEecCCCcEEEEEeC---CCcEEEEeCCCCce---eEEecCCCC-CCeeEEEEe
Q 039790 358 LKCPVDELINGVQLVGKHDGEI-TELSMCQWLTTRLASASL---DGTVKIWDDRKSTP---LAVLRPYDG-HPVNCVTFL 429 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V-~slafspdg~~~LaSgs~---Dg~IrIWDl~sg~~---l~tl~~h~~-~~V~sV~fs 429 (1395)
.......+..+...+ ..+... .+ .+++.... .+.|.-.++..... ...+..|.. ..+..+...
T Consensus 265 -------~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 265 -------PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp -------SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred -------CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence 000123333333333 334443 33 44444332 35677777776642 224555543 134455443
Q ss_pred ecCCCCCcEEEEEecCCC--eEEEEECC
Q 039790 430 IGPHPQHIVLITGGPLNR--ELKIWASA 455 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg--~I~IWDl~ 455 (1395)
+.+|+.....|+ .|++||+.
T Consensus 336 ------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 336 ------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp ------TTEEEEEEEETTEEEEEEEETT
T ss_pred ------CCEEEEEEEECCccEEEEEECC
Confidence 555655553554 57888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.065 Score=66.87 Aligned_cols=234 Identities=12% Similarity=-0.011 Sum_probs=124.2
Q ss_pred EecCCCEEEEE-EcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCC----cEEEEECCCCCCCCCCc
Q 039790 224 IAVNRNYICYG-LKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDG----RFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 224 ~Spdg~~LasG-s~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~Dg----tV~IWdl~tg~~~~~~~ 297 (1395)
+++||+.+... -..+.+.++|..+..+. .+. -.+.-..++| +++|.++++++.+. ++..-+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~-Vdgnpd~v~~-spdGk~afvTsyNsE~G~tl~em~a~e~d------ 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM-VDGNLDNVDT-DYDGKYAFSTCYNSEEGVTLAEMMAAERD------ 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEE-eCCCcccceE-CCCCCEEEEeccCcccCcceeeeccccCc------
Confidence 56688766433 34577888888875322 211 1224456677 77888887776321 22222221111
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.+..+.+.. ...+.++|.+.++ .++.+.++|........ ..+..+-.-..
T Consensus 272 -----~~vvfni~~-------iea~vkdGK~~~V--~gn~V~VID~~t~~~~~----------------~~v~~yIPVGK 321 (635)
T PRK02888 272 -----WVVVFNIAR-------IEEAVKAGKFKTI--GGSKVPVVDGRKAANAG----------------SALTRYVPVPK 321 (635)
T ss_pred -----eEEEEchHH-------HHHhhhCCCEEEE--CCCEEEEEECCccccCC----------------cceEEEEECCC
Confidence 010110000 0122345655554 35678888865410000 00122222456
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------------eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------------LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------------l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
....|+++|||..+++++..+.+|-|.|+.+.+. +.+..- +......+|. ++|....+ -..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFD----g~G~ayts-lf~ 394 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFD----GRGNAYTT-LFL 394 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEEC----CCCCEEEe-Eee
Confidence 6788999999966666677799999999987542 333332 2246778897 78865444 558
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
|..|..||+...-. .....+.+..+..+..|-..... +....-.-.+||+||++..+
T Consensus 395 dsqv~kwn~~~a~~--~~~g~~~~~v~~k~dV~y~pgh~----~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 395 DSQIVKWNIEAAIR--AYKGEKVDPIVQKLDVHYQPGHN----HASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cceeEEEehHHHHH--HhccccCCcceecccCCCcccee----eecCCCcCCCCCCEEEEccc
Confidence 99999999976200 00011223555555544332110 00001122688999988654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.37 Score=59.09 Aligned_cols=204 Identities=14% Similarity=0.075 Sum_probs=104.4
Q ss_pred EEEecCCCEEEEEEcC----------C-eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 222 RQIAVNRNYICYGLKL----------G-NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 222 va~Spdg~~LasGs~D----------G-~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
++.++.|..||....+ . .|+||+..+..+..+.--.+.|.++.| .. ...|+.-..||++++||+. |
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~w-t~-~e~LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGW-TD-DEELVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEE-CC-CCeEEEEEcCCEEEEEeCC-C
Confidence 4556666666665443 2 599999988876655444489999999 55 4567778899999999987 4
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. .+. .+..+ ....-.+..+..+ +..+.+ +++...++.++.+........ +.. .........
T Consensus 111 ~~--~fs--l~~~i---~~~~v~e~~i~~~-~~~~~G-ivvLt~~~~~~~v~n~~~~~~--~~~-------~~~~p~~~~ 172 (410)
T PF04841_consen 111 EF--QFS--LGEEI---EEEKVLECRIFAI-WFYKNG-IVVLTGNNRFYVVNNIDEPVK--LRR-------LPEIPGLWT 172 (410)
T ss_pred ce--eec--hhhhc---cccCccccccccc-ccCCCC-EEEECCCCeEEEEeCccccch--hhc-------cccCCCccc
Confidence 31 000 00000 0000001111111 222222 444445555655544221100 000 000000000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.+..+.....-..++.++ ...+....++.+.+.+-..... +.. .+ ++..++.| |+|++|+.-. .+|.+.
T Consensus 173 ~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~---i~~-~~-~i~~iavS----png~~iAl~t-~~g~l~ 241 (410)
T PF04841_consen 173 KFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ---IDS-DG-PIIKIAVS----PNGKFIALFT-DSGNLW 241 (410)
T ss_pred ccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc---ccC-CC-CeEEEEEC----CCCCEEEEEE-CCCCEE
Confidence 001111110012344444 4555555666666444332211 332 23 79999999 9999998876 789998
Q ss_pred EEECCCC
Q 039790 451 IWASAEE 457 (1395)
Q Consensus 451 IWDl~tg 457 (1395)
|+..+-.
T Consensus 242 v~ssDf~ 248 (410)
T PF04841_consen 242 VVSSDFS 248 (410)
T ss_pred EEECccc
Confidence 8876554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.93 Score=57.04 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCC------Ce--EEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQ------RV--TDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~------~V--~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..++.++.+|.|+-+|..+|++. .+..... .+ ..+.+ .++..++.++.||.|+-+|.++|+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCC
Confidence 445777777899999999888532 2221111 11 11222 122678888899999999999998
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.85 Score=51.70 Aligned_cols=217 Identities=13% Similarity=0.160 Sum_probs=107.5
Q ss_pred EeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 252 LLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.+.+-...+..|+| .++ +.+++.....+.|...+.. |+ .+..+.+.+ ....-.|++..++.+++
T Consensus 16 ~l~g~~~e~SGLTy-~pd~~tLfaV~d~~~~i~els~~-G~-----------vlr~i~l~g--~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTY-NPDTGTLFAVQDEPGEIYELSLD-GK-----------VLRRIPLDG--FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEE-ETTTTEEEEEETTTTEEEEEETT--------------EEEEEE-SS---SSEEEEEE-STTEEEE
T ss_pred ECCCccCCccccEE-cCCCCeEEEEECCCCEEEEEcCC-CC-----------EEEEEeCCC--CCCceeEEEECCCEEEE
Confidence 45566667999999 554 5677777888888888864 55 444444433 34455788876664444
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE--EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ--LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
+.-..+.++.+.......... ..+ ...+. ....+...+-.++|.+.+ +.|+.+-...-.+||.+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~----------~~~-~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLD----------RAD-VQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EETTTTEEEEEEE----TT------------EEE-EEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEES
T ss_pred EEcCCCcEEEEEEeccccccc----------hhh-ceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEcc
Confidence 443467777776633221100 000 00011 112355678999999987 4555566666666766543
Q ss_pred ---CceeEEec--------CCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 409 ---STPLAVLR--------PYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 409 ---g~~l~tl~--------~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
...+.... .+.. .+.+++|. |.. .+++. +..++.|.++| ..| +.+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-d~S~l~~~----p~t~~lliL-S~es~~l~~~d-~~G------------~~~~~~~ 209 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVR-DLSGLSYD----PRTGHLLIL-SDESRLLLELD-RQG------------RVVSSLS 209 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS----EEEEE----TTTTEEEEE-ETTTTEEEEE--TT--------------EEEEEE
T ss_pred ccCccceeeccccccccccceec-cccceEEc----CCCCeEEEE-ECCCCeEEEEC-CCC------------CEEEEEE
Confidence 22222111 1222 57899998 554 44444 55899999999 555 6677666
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
...+...-...-.--..++|.++|++.+++ .-|..|+|
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 555321100000012369999999877765 46666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.46 Score=55.62 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=113.5
Q ss_pred EEecCCCE-EEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 223 QIAVNRNY-ICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 223 a~Spdg~~-LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|.++... +.+--..+.|.-|+..++....+..... +.++.. -..+..|+++.. -+++++.+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-~~~~~~-~d~~g~Lv~~~~--g~~~~~~~~~~~--------- 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-FSSGAL-IDAGGRLIACEH--GVRLLDPDTGGK--------- 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-ccccee-ecCCCeEEEEcc--ccEEEeccCCce---------
Confidence 36666664 4444667899999998887776664443 455544 334445555543 477888765541
Q ss_pred ceEEEEE-Ee-cCCCCCccEEEEeCCCCeEEEEEeC-----------CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 302 KIVVAIQ-IL-ADGDSVHPRVCWHPHKQEILMLAIG-----------NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 302 ~~i~~l~-~~-~~~~~~v~~v~~sp~~~~lla~g~~-----------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+..+. .. .......+.+...|+|...+..... +.+++++. ....
T Consensus 98 --~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p---------------------~g~~ 154 (307)
T COG3386 98 --ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP---------------------DGGV 154 (307)
T ss_pred --eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC---------------------CCCE
Confidence 01111 11 1122344567788887644433221 11222221 0111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--C----ce-eEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--S----TP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g----~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
.+.+..|-..-+.|+||||+..++++=+..+.|.-|++.. + +. ...+..+.+ ..-.++.. .+|.+.++
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G-~PDG~~vD----adG~lw~~ 229 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG-LPDGMAVD----ADGNLWVA 229 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCC-CCCceEEe----CCCCEEEe
Confidence 3444445556678999999954555555558888887652 1 11 122222334 55566665 67776654
Q ss_pred EecCCC-eEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNR-ELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg-~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+. .+| .|.+|+.. + +.+..+..+..
T Consensus 230 a~-~~g~~v~~~~pd-G------------~l~~~i~lP~~ 255 (307)
T COG3386 230 AV-WGGGRVVRFNPD-G------------KLLGEIKLPVK 255 (307)
T ss_pred cc-cCCceEEEECCC-C------------cEEEEEECCCC
Confidence 44 444 89999887 6 88888887743
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.1 Score=56.39 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=60.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-----------------ecCCCeEEEEE
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-----------------GPLNRELKIWA 453 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-----------------Gs~Dg~I~IWD 453 (1395)
+++.++.+|.+...|.++|+.+....... ..+..+ | + .++.. ...+|.|.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~----~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYD----P-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec----cccccC----C-c-eEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 67888899999999999999888764210 112222 2 1 12111 11357788888
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccc-cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAEL-RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.++ +.+-+......... ......+...+. -.+.+|+.++.||.|+.+|..+|+
T Consensus 373 ~~tG------------~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 373 PKTG------------KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCCC------------cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCc
Confidence 8877 43333332210000 000000111122 245678888899999999999886
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.5 Score=50.37 Aligned_cols=219 Identities=13% Similarity=0.144 Sum_probs=99.2
Q ss_pred CcCCCCCee--ee----CceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 039790 175 SKVPKGRHL--IG----NHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICYGLKLGNIRILNIIT 247 (1395)
Q Consensus 175 ~~sp~Gr~L--~G----~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~LasGs~DG~IrIWd~~~ 247 (1395)
+|..+|+.| .+ ...+|.++.. ...+..|+... ....+..++++.+.|++......|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~----------t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA----------TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT----------T-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc----------cCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc
Confidence 355677666 22 3356666543 23334443322 1122455789999998877777899999999
Q ss_pred Cce-EEeccCCCCeEEEEEe-eCCCCEEEEEEC----------------------CCcEEEEECCCCCCCCCCcccccce
Q 039790 248 ALR-SLLRGHTQRVTDMAFF-AEDVHLLASASV----------------------DGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 248 ~~~-~~l~~H~~~V~slaf~-s~dg~~LaSgs~----------------------DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
.+. ..+.-..+.+-...|. ..++.+++.+-. .+.|+--|+.+|+
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~------------ 179 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE------------ 179 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--------------
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc------------
Confidence 754 4444555666556663 345555544321 1234444444443
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eE-EEEEcCCCCccccccCCCCCccCccccccceEEEcccC--C
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RI-LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--G 377 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~i-i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--~ 377 (1395)
...+......+..+.|+|....+++-|..+ .+ .++|........ .+.+..|. .
T Consensus 180 ---~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~------------------~~~v~~~~~~e 238 (386)
T PF14583_consen 180 ---RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN------------------VKKVHRRMEGE 238 (386)
T ss_dssp ---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------------------EESS---TTE
T ss_pred ---eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc------------------ceeeecCCCCc
Confidence 122222334455688999998888888743 22 133332221110 11111121 2
Q ss_pred CeEEEEEecCCCcEEEEEe----CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 378 EITELSMCQWLTTRLASAS----LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs----~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.-=-|.+||..+..-+. .+..|.-+|..++........ . +..-+--+ +||.+++-=|
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p-~~~H~~ss----~Dg~L~vGDG 301 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--P-WCSHFMSS----PDGKLFVGDG 301 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-----TTSSEEEEEE
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--C-ceeeeEEc----CCCCEEEecC
Confidence 2333457888854443332 244577778888755332221 1 33334444 8888776545
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.3 Score=53.82 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=65.5
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC-------------CC
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP-------------QH 436 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p-------------dg 436 (1395)
..+......+.+++.+|++ ++.|+...=|+|.++|+..+..++.++|..+..+.-+......+. ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3444455678999999997 788887777999999999999999999887622222211100000 02
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.+|+.-...-|.|.||+++.| ..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g------------~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQG------------PRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCC------------CEEEEEEe
Confidence 245554558899999999998 77766654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.31 Score=59.99 Aligned_cols=145 Identities=9% Similarity=0.045 Sum_probs=78.2
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
....-....|.+ +|+|++++.| .||...|+...... . ... +....++|...+ .+++.-
T Consensus 29 g~~~~~p~~ls~-npngr~v~V~-g~geY~iyt~~~~r--------------~-k~~----G~g~~~vw~~~n-~yAv~~ 86 (443)
T PF04053_consen 29 GSCEIYPQSLSH-NPNGRFVLVC-GDGEYEIYTALAWR--------------N-KAF----GSGLSFVWSSRN-RYAVLE 86 (443)
T ss_dssp EE-SS--SEEEE--TTSSEEEEE-ETTEEEEEETTTTE--------------E-EEE----EE-SEEEE-TSS-EEEEE-
T ss_pred CCCCcCCeeEEE-CCCCCEEEEE-cCCEEEEEEccCCc--------------c-ccc----CceeEEEEecCc-cEEEEE
Confidence 334445788999 8999988884 56788888743322 1 111 223468898844 455555
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA 413 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~ 413 (1395)
....+.++........ ..+. ....+..|-. | .+|...+.+ .|.+||+.+++.++
T Consensus 87 ~~~~I~I~kn~~~~~~--------------------k~i~-~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~ 140 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVV--------------------KSIK-LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR 140 (443)
T ss_dssp TTS-EEEEETTEE-TT--------------------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE
T ss_pred CCCeEEEEEcCccccc--------------------eEEc-CCcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee
Confidence 4555665543221110 1111 1112333332 5 666666544 89999999999999
Q ss_pred EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 414 VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 414 tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+... .|..|.|+ ++|.+++..+ +..+.|++..
T Consensus 141 ~i~v~---~vk~V~Ws----~~g~~val~t--~~~i~il~~~ 173 (443)
T PF04053_consen 141 RIDVS---AVKYVIWS----DDGELVALVT--KDSIYILKYN 173 (443)
T ss_dssp EESS----E-EEEEE-----TTSSEEEEE---S-SEEEEEE-
T ss_pred EEecC---CCcEEEEE----CCCCEEEEEe--CCeEEEEEec
Confidence 99743 48999999 9999999876 5678888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.1 Score=63.92 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=99.9
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE---CC-CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS---VD-GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs---~D-gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
+.+.+-|.+......+..-...+..-+| ++++..++... .. ..++++|+.++.... .+. .
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~w-s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-----------i~~----~ 236 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAW-SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-----------ILN----F 236 (425)
T ss_pred ceEEEEccCCcceeEecccCcceecccc-CcCCCceEEEEEecCCCceEEEEeccCCccce-----------eec----c
Confidence 3444545543234444444556667778 77777655442 22 469999999987211 111 1
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
......-.|+|+|..++.+...+...-++........ ...+..-.+.-+.=.|+|||..++.
T Consensus 237 ~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~------------------~~~Lt~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN------------------LPRLTNGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc------------------ceecccCCccccCccCCCCCCEEEE
Confidence 2222346899999988888776554444433222110 1112222222235679999955555
Q ss_pred EEeCCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCC
Q 039790 394 SASLDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEE 457 (1395)
Q Consensus 394 Sgs~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg 457 (1395)
+.+..|. |.++|...+.. ..+....+ .-..-.|+ |||++|+..+..+|. |.+.|+.++
T Consensus 299 ~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~S----pdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 299 TSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWS----PDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCC----CCCCEEEEEeccCCceeeEEeccCCC
Confidence 5556666 55556554443 33333333 22367788 999999987744555 666666555
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=64.14 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=97.3
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~ 335 (1395)
|...|.--++ ...+++|+.|+.-|.|++|+-..+.... ...+.....+..++.++.. ++++.|..
T Consensus 32 ~~~~v~lTc~-dst~~~l~~GsS~G~lyl~~R~~~~~~~-------------~~~~~~~~~~~~~~vs~~e-~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCV-DATEEYLAMGSSAGSVYLYNRHTGEMRK-------------LKNEGATGITCVRSVSSVE-YLVAAGTA 96 (726)
T ss_pred CcceEEEEEe-ecCCceEEEecccceEEEEecCchhhhc-------------ccccCccceEEEEEecchh-HhhhhhcC
Confidence 3344554555 6788999999999999999988776211 1111233444455666665 45555555
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ce
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----TP 411 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~ 411 (1395)
++.+.|.....+... +. ... ...-..|...|++++|++++ ..|.+|..-|+|..-.+.+. ..
T Consensus 97 ~g~V~v~ql~~~~p~----~~-------~~~--t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~ 162 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPR----DL-------DYV--TPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSK 162 (726)
T ss_pred CceEEeehhhccCCC----cc-------eee--ccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccc
Confidence 555555443322110 00 000 00112378899999999999 89999999999998877762 12
Q ss_pred eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 412 LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 412 l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.+.+-...+ .|-.+.+. ++..|++.. -...++++..
T Consensus 163 ~q~il~~ds-~IVQlD~~-----q~~LLVStl---~r~~Lc~tE~ 198 (726)
T KOG3621|consen 163 SQEILSEDS-EIVQLDYL-----QSYLLVSTL---TRCILCQTEA 198 (726)
T ss_pred cceeeccCc-ceEEeecc-----cceehHhhh---hhhheeecch
Confidence 223333344 78888885 565555533 2334555544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.008 Score=44.77 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=34.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILN 244 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd 244 (1395)
.++..+..|...|.++.|.+++.++++|+.||.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0014 Score=79.01 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=106.1
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEc----CCeEEEEECCCCc-----eEEecc-CCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLK----LGNIRILNIITAL-----RSLLRG-HTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~----DG~IrIWd~~~~~-----~~~l~~-H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+|...+++++|++ |.+.||.|.. |..+.|||+.++. ...|.+ ......+++| -.+.+++++|...+.
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cw-lrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCW-LRDTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccc-ccCcchhhcccccch
Confidence 35778899999988 6778888853 6789999998861 222333 4455678999 588889999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-CCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-VGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-~~~~~~~s~~~~~~~ 360 (1395)
|.++|++..... ...-....+..+...|.....++...++.+..||... ... ++..
T Consensus 178 ~~ifdlRqs~~~---------------~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien--------pl~~ 234 (783)
T KOG1008|consen 178 VHIFDLRQSLDS---------------VSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN--------PLQI 234 (783)
T ss_pred hhhhhhhhhhhh---------------hhhhhhhhcccceecCCCCCceeccccCceeeccchhhhcc--------HHHH
Confidence 999999843210 0000112334566777666677777777777777422 111 1100
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD-GTVKIWDDR 407 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D-g~IrIWDl~ 407 (1395)
. ++......+.+..++|+|....++++...| ++|++||+.
T Consensus 235 i-------~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 235 I-------LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred H-------hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 0 000111223588999999876678887765 789999975
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.73 Score=53.83 Aligned_cols=219 Identities=9% Similarity=0.107 Sum_probs=121.4
Q ss_pred EEEecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCCCCcc
Q 039790 222 RQIAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEEDKPQ 298 (1395)
Q Consensus 222 va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~~~~~ 298 (1395)
.+++.||++++..- =--.|.|.|+..++...-..-.++ .+.| +....-|.+-|.||++.-..+.. |+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~------ 170 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIY-PSGNRGFSMLCGDGSLLTVTLDADGKE------ 170 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEE-EEETTEEEEEETTSCEEEEEETSTSSE------
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEE-ecCCCceEEEecCCceEEEEECCCCCE------
Confidence 46888999887763 346788999988764433223332 2334 44446688999999999999984 441
Q ss_pred cccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
. ...-.++..... ....-.+...+..++..+..|.++..+.....-. |. .++..........-... +
T Consensus 171 ---~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~--~~--~~~~~~t~~e~~~~WrP----G 238 (342)
T PF06433_consen 171 ---A-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK--FG--KPWSLLTDAEKADGWRP----G 238 (342)
T ss_dssp ---E-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE--EE--EEEESS-HHHHHTTEEE-----
T ss_pred ---e-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc--cc--CcccccCccccccCcCC----c
Confidence 0 111223333222 2233455556667777888888888877553211 00 00000000000000111 1
Q ss_pred CeEEEEEecCCCcEEEEEe-------CCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCC
Q 039790 378 EITELSMCQWLTTRLASAS-------LDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNR 447 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs-------~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg 447 (1395)
.-.-+++++..+++++.-. +|+ .|-+||+.+++.+..+.... .+.+|..+ .|.+ +|++....++
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vs----qd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVS----QDDKPLLYALSAGDG 312 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEE----SSSS-EEEEEETTTT
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEc----cCCCcEEEEEcCCCC
Confidence 1223566654423322211 122 37778999999999998542 68899998 5544 6655444689
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.|.+||..++ +.+++++.-+
T Consensus 313 ~l~v~D~~tG------------k~~~~~~~lG 332 (342)
T PF06433_consen 313 TLDVYDAATG------------KLVRSIEQLG 332 (342)
T ss_dssp EEEEEETTT--------------EEEEE---S
T ss_pred eEEEEeCcCC------------cEEeehhccC
Confidence 9999999999 8888887544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.11 Score=62.09 Aligned_cols=142 Identities=15% Similarity=0.225 Sum_probs=92.7
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-------eEEEEEeCCeEEEEEcC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-------EILMLAIGNRILKIDSN 344 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-------~lla~g~~~~ii~~d~~ 344 (1395)
+|.++..-..|+--|++.|+ ++....+..+ |+-+.+.|+.. .-|++-+++.+++||.+
T Consensus 348 il~~~~~~~~l~klDIE~GK-----------IVeEWk~~~d----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-----------IVEEWKFEDD----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred EeeCCCCcCcceeeecccce-----------eeeEeeccCC----cceeeccCCcchhcccccccEEeecCCceEEeccc
Confidence 34455555667888888877 3333332222 55555655432 35677778899999987
Q ss_pred CCCccccccCCCCCccCccccccceEEEccc----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCC
Q 039790 345 RVGKGERFSAEEPLKCPVDELINGVQLVGKH----DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYD 419 (1395)
Q Consensus 345 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~ 419 (1395)
-.+... +....+| .....|++-.-+| ++|.||.+|.||+||- .+..-++ |.+-.
T Consensus 413 v~~~~k------------------l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG 471 (644)
T KOG2395|consen 413 VQGKNK------------------LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLG 471 (644)
T ss_pred ccCcce------------------eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccC
Confidence 443310 1122222 2345677766665 9999999999999995 5544444 45555
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
. +|..|..+ .||+||+.+| +..|.|-++.-
T Consensus 472 ~-~I~hVdvt----adGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 472 D-AIKHVDVT----ADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred C-ceeeEEee----ccCcEEEEec--ccEEEEEEEec
Confidence 4 99999999 9999999876 77788877653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=63.89 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=87.2
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|+.+|+....... -........+-.+..+.....+.++|.++.+++ +.++...++......
T Consensus 3 ~i~~~~~~~~~~~~----dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------- 64 (443)
T PF04053_consen 3 EIRTANLKNISEIK----DGERLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------- 64 (443)
T ss_dssp EEEEEE--S---------TTS-B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE-------------
T ss_pred ceEEEECcCCCccC----CCceeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc-------------
Confidence 46666766652100 011222334445555666789999999987666 555555555421110
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
. ...+....++|... +.+|+-...++|+|+.--+......+.... .+..+ | . |..|+
T Consensus 65 ---------~---k~~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~--~~~~I-f-----~-G~LL~ 121 (443)
T PF04053_consen 65 ---------N---KAFGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKLPF--SVEKI-F-----G-GNLLG 121 (443)
T ss_dssp ---------E---EEEEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT-----SS---EEEE-E-------SSSEE
T ss_pred ---------c---cccCceeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcCCc--ccceE-E-----c-CcEEE
Confidence 0 12244567889885 467887778999997433333333443221 23333 2 2 77777
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+ ++.|.+||+.++ +.++.+.... + ..+.|+++|.+++-.+.+ .++|++.+.
T Consensus 122 ~~~--~~~i~~yDw~~~------------~~i~~i~v~~--v---------k~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 122 VKS--SDFICFYDWETG------------KLIRRIDVSA--V---------KYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEE--TTEEEEE-TTT--------------EEEEESS-E------------EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EEC--CCCEEEEEhhHc------------ceeeEEecCC--C---------cEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 755 558999999988 8888887543 1 248999999999988755 688988764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.4 Score=51.71 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=106.0
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEecc----C-CCCeEEEEEeeCCCCEEEEEEC-----------C
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRG----H-TQRVTDMAFFAEDVHLLASASV-----------D 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~----H-~~~V~slaf~s~dg~~LaSgs~-----------D 279 (1395)
+.+.+...--++..|+++. ..+++++.+.+.. ..+.. . ..+-+++.+ .++|.+-++... -
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeE-cCCCCEEEeCCCccccCccccCCc
Confidence 3334443333444454443 3466777766543 32221 1 134566777 677765554333 0
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|.|+.+|. .+. ..+....+-..-+.++|+|++..++.+-.. +.+.+++... ..+..
T Consensus 143 G~lyr~~p-~g~--------------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~-~~g~~------- 199 (307)
T COG3386 143 GSLYRVDP-DGG--------------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP-ATGPI------- 199 (307)
T ss_pred ceEEEEcC-CCC--------------EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc-ccCcc-------
Confidence 22333332 222 223333334445679999999877777654 7777777643 11100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
... .....+..+.+..-.++...+| ++.+++..+| .|.+|+.. |+.+..+..... .+++++|- -++.+
T Consensus 200 ----~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~Fg---G~~~~ 268 (307)
T COG3386 200 ----GGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFG---GPDLN 268 (307)
T ss_pred ----CCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEe---CCCcC
Confidence 000 1122333345666678888888 5555555554 89999987 999999987754 89999996 24556
Q ss_pred EEEEEe
Q 039790 438 VLITGG 443 (1395)
Q Consensus 438 ~L~s~G 443 (1395)
.|++++
T Consensus 269 ~L~iTs 274 (307)
T COG3386 269 TLYITS 274 (307)
T ss_pred EEEEEe
Confidence 555544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.16 Score=62.12 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=109.4
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEc---C-CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEE-ECCCc--EE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLK---L-GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA-SVDGR--FF 283 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~---D-G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSg-s~Dgt--V~ 283 (1395)
.+......+..-.|++++..+++-.. . ..|.++|++++....+....+.-..-+| ++||++|+-+ ..||. |+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCCCCccEE
Confidence 33334455666689999988777632 2 4599999999864433334444456788 8888876654 45665 66
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+.|+..+.. .+ +....+.-..=.|+|+|..++.++..++.-.++.......
T Consensus 266 ~~dl~~~~~--------------~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------------- 316 (425)
T COG0823 266 LMDLDGKNL--------------PR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------------- 316 (425)
T ss_pred EEcCCCCcc--------------ee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--------------
Confidence 667765541 11 1222222234578999998887766443323222211110
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+....+.-..-.|+||| .+|+..+. +|. |.+.|+.++.-++.+..-. ....-+|. ++|+.++
T Consensus 317 ----~~~riT~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~----~ng~~i~ 385 (425)
T COG0823 317 ----QVTRLTFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKIRILTSTY--LNESPSWA----PNGRMIM 385 (425)
T ss_pred ----ceeEeeccCCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCcEEEccccc--cCCCCCcC----CCCceEE
Confidence 012222222222377899999 66666554 454 6667776665455444221 34456676 8888777
Q ss_pred EEe
Q 039790 441 TGG 443 (1395)
Q Consensus 441 s~G 443 (1395)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.5 Score=53.40 Aligned_cols=203 Identities=10% Similarity=0.025 Sum_probs=127.4
Q ss_pred CEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~ 293 (1395)
.-.+++++++++.+... ..++.|.+.|..+........-...-..++| ++++..+..+.. +++|.+.|-.+++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~-~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAV-DPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEE-CCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 34567888888755444 4568999999776543322222226678888 778866666555 6778888877765
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. +......... ..+++.|++..++++. .++.+..++.....- +. .. ....
T Consensus 152 ---------~---~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v--------------~~-~~-~~~~ 202 (381)
T COG3391 152 ---------V---TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV--------------VR-GS-VGSL 202 (381)
T ss_pred ---------E---EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce--------------ec-cc-cccc
Confidence 1 2222222223 7899999999887777 456666666322110 00 00 0000
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLD--GTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~D--g~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
..-...-..+.++++|.+..++...+ +.+.+.|..++..... +..-.. ....+.++ |+|.++.+.-+..+.+
T Consensus 203 ~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~----p~g~~~yv~~~~~~~V 277 (381)
T COG3391 203 VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVD----PAGKAAYVANSQGGTV 277 (381)
T ss_pred cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeEC----CCCCEEEEEecCCCeE
Confidence 11223346788999995444544444 6899999998876665 333333 46678888 9999888875566889
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
.+-|..+.
T Consensus 278 ~vid~~~~ 285 (381)
T COG3391 278 SVIDGATD 285 (381)
T ss_pred EEEeCCCC
Confidence 99988876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=4.6 Score=47.36 Aligned_cols=178 Identities=8% Similarity=0.012 Sum_probs=88.2
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+.|+|+|.+++.+.-.. -.+-.-.+.. +++++.+++++ ..-.|.+||..+-. ....+
T Consensus 17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~-spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-----------~~~EI 83 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI-DTGFLGNVAL-SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-----------PTGEI 83 (342)
T ss_dssp EEEEEEETTTTEEEEEE-EEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-----------EEEEE
T ss_pred ceEEEEECCCCcEEEEe-ecccCCceeE-CCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-----------ccceE
Confidence 46888888877533111 1122334566 78888877653 23359999999854 11122
Q ss_pred EEecCC----CCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 308 QILADG----DSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 308 ~~~~~~----~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
.+-..+ ......+.++.+++++++.-.. ..+-++|.....- +..+. -.+ |
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv--------------------v~ei~-~PG---C 139 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV--------------------VGEID-TPG---C 139 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE--------------------EEEEE-GTS---E
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce--------------------eeeec-CCC---E
Confidence 222211 1122345666666665554432 3344444422100 11111 111 2
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEe----cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVL----RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl----~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.-.-|.++..|.+.|.||.+.-..+. .|+...+. .......+..-.+. ..++.+++. . .+|.|+--|+..
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~---~~~~~~~F~-S-y~G~v~~~dlsg 214 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS---RDGGRLYFV-S-YEGNVYSADLSG 214 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE---TTTTEEEEE-B-TTSEEEEEEETT
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE---CCCCeEEEE-e-cCCEEEEEeccC
Confidence 22234444678888899998888877 45554322 12222022233443 123445554 3 899999999876
Q ss_pred C
Q 039790 457 E 457 (1395)
Q Consensus 457 g 457 (1395)
.
T Consensus 215 ~ 215 (342)
T PF06433_consen 215 D 215 (342)
T ss_dssp S
T ss_pred C
Confidence 5
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.5 Score=50.16 Aligned_cols=239 Identities=10% Similarity=0.030 Sum_probs=140.2
Q ss_pred CEEEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGL-KLGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
....+.+.+++..+.... ....+.+.+........+..-. ..-..+++ .+.+. .+++...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v-~~~~~~vyv~~~~~~~v~vid~~~~~~-- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAV-NPAGNKVYVTTGDSNTVSVIDTATNTV-- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceee-CCCCCeEEEecCCCCeEEEEcCcccce--
Confidence 445566777775444432 2224555554422222211111 33446677 45555 666666678999999776551
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
+....-.. ....+.|+++++.++++.. ++.+..++...... ...
T Consensus 109 ------------~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--------------------~~~ 155 (381)
T COG3391 109 ------------LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--------------------TAT 155 (381)
T ss_pred ------------eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--------------------EEE
Confidence 22222111 4457999999998888877 45666666543221 111
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
...-..+ ..+++.|+|...+++-..+++|.+.|.......+ .+..+. ....+.++ ++|.++......+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~----~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAGIAVD----PDGNRVYVANDGS 228 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCceEEEC----CCCCEEEEEeccC
Confidence 1111123 8899999995455555688999999976655443 122222 45778888 8999766655233
Q ss_pred --CeEEEEECCCCCCCCCCCCcccccEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCC
Q 039790 447 --RELKIWASAEEEGWLLPSDIESWKCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYG 520 (1395)
Q Consensus 447 --g~I~IWDl~tg~~~~~~~~~~~~~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g 520 (1395)
+.+.+.|..++ ..... +..... ....+.++|+|.++.... ..+.+++.|..+.
T Consensus 229 ~~~~v~~id~~~~------------~v~~~~~~~~~~---------~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 229 GSNNVLKIDTATG------------NVTATDLPVGSG---------APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCceEEEEeCCCc------------eEEEeccccccC---------CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 58888888876 44333 111110 011378889999887764 4478888887653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.5 Score=53.25 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=46.7
Q ss_pred EEEEecCCCEEEEEEcCCeEEE---EECCC-----Cc-eEEecc---CC--CCeEEEEEee----------CCCCEEEEE
Q 039790 221 GRQIAVNRNYICYGLKLGNIRI---LNIIT-----AL-RSLLRG---HT--QRVTDMAFFA----------EDVHLLASA 276 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrI---Wd~~~-----~~-~~~l~~---H~--~~V~slaf~s----------~dg~~LaSg 276 (1395)
.++.++++++||.|..+..+.+ |+... +. .....+ +. ..|+++.|.+ +|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4578999999999988776665 64421 11 111111 21 5788877742 346789999
Q ss_pred ECCCcEEEEECCCCC
Q 039790 277 SVDGRFFIWNITEGP 291 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~ 291 (1395)
..+|.|++|... |.
T Consensus 86 ~ssG~vrfyte~-G~ 99 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GV 99 (415)
T ss_pred ecccEEEEEecc-ch
Confidence 999999999974 44
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.8 Score=49.63 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=99.7
Q ss_pred CeEEEEECCCCc-e--EEeccCCCCeEEEEEee--C----CCCEEEEEEC----------CCcEEEEECCCCCCCCCCcc
Q 039790 238 GNIRILNIITAL-R--SLLRGHTQRVTDMAFFA--E----DVHLLASASV----------DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 238 G~IrIWd~~~~~-~--~~l~~H~~~V~slaf~s--~----dg~~LaSgs~----------DgtV~IWdl~tg~~~~~~~~ 298 (1395)
..|++.|..+.. + ..|.. ...|.+++... . ...+|+.|.. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------ 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------ 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc------
Confidence 357888877653 2 23332 23455544422 2 1467776643 28999999998410
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
....+ .+.......+.|++++-. ++. ++++.++.+.+++...... ......+. ....
T Consensus 75 -~~~~l-~~i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~-----------------l~~~~~~~-~~~~ 131 (321)
T PF03178_consen 75 -NNFKL-KLIHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKT-----------------LLKKAFYD-SPFY 131 (321)
T ss_dssp ----EE-EEEEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSS-----------------EEEEEEE--BSSS
T ss_pred -cceEE-EEEEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCccc-----------------chhhheec-ceEE
Confidence 00111 111222335667777665 444 7777788888877644320 01112222 2336
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRK-ST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+.++... + ++|+.|...+.|.++..+. +. ....-+.....+++++.|. .+++.++. ++.+|.|.++....
T Consensus 132 i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l----~d~~~~i~-~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 132 ITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL----VDEDTIIV-GDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-----SSSEEEE-EETTSEEEEEEE-S
T ss_pred EEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe----cCCcEEEE-EcCCCeEEEEEECC
Confidence 7777765 3 6899998888888774432 22 2222222223379999997 67766665 45999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.025 Score=41.95 Aligned_cols=39 Identities=28% Similarity=0.521 Sum_probs=32.7
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+.++..+..|.. .|.++.|. +++.++++++ .|+.|++||
T Consensus 2 ~~~~~~~~~~~~-~i~~~~~~----~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-PVTSVAFS----PDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-ceeEEEEC----CCCCEEEEec-CCCeEEEcC
Confidence 456777888887 99999998 7888888866 999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=66.96 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=66.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
-.|..+.|+|.-.+||++..+|.|.+..++-..+.++.-|...|+ +++| .+||++|+.|-.||+|++.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W-~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCW-RPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeee-cCCCCEEEEEecCCeEEEEEccCCC
Confidence 456778899999999999999999999988666777777777777 9999 8999999999999999999999987
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.56 E-value=8.5 Score=47.21 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred EEEEEeeCCCCEEEEE-ECCC----cEEEEECCCCCCCCCCcccccceEE-EEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 261 TDMAFFAEDVHLLASA-SVDG----RFFIWNITEGPDEEDKPQILGKIVV-AIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 261 ~slaf~s~dg~~LaSg-s~Dg----tV~IWdl~tg~~~~~~~~~~~~~i~-~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
..+++ ++++++|+-+ +..| +|+|+|+.+|+. +. .+... ....+.|.+++..++.+..
T Consensus 127 ~~~~~-Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----------l~d~i~~~-----~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 127 GGFSV-SPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----------LPDGIENP-----KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEE-TTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----------EEEEEEEE-----ESEEEEECTTSSEEEEEEC
T ss_pred eeeeE-CCCCCEEEEEecCCCCceEEEEEEECCCCcC-----------cCCccccc-----ccceEEEeCCCCEEEEEEe
Confidence 35667 8999988755 3444 499999999861 11 11111 1123999999988887775
Q ss_pred CCe--------EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEEEEEecCCCcEEEEEeCC---CcE
Q 039790 335 GNR--------ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITELSMCQWLTTRLASASLD---GTV 401 (1395)
Q Consensus 335 ~~~--------ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~slafspdg~~~LaSgs~D---g~I 401 (1395)
+.. -..++....+.. ......++...... ...+.++.|+..+++..... ..|
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~---------------~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTP---------------QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS----------------GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred CcccccccCCCCcEEEEEECCCC---------------hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 542 222222122211 00113444443332 67888999984334444433 347
Q ss_pred EEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe--cCCCeEEEEECCCC
Q 039790 402 KIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG--PLNRELKIWASAEE 457 (1395)
Q Consensus 402 rIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G--s~Dg~I~IWDl~tg 457 (1395)
.+.|+..+ .....+..+.......+... .+.+++.+. ..++.|.-.++...
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-----~~~~yi~Tn~~a~~~~l~~~~l~~~ 311 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-----GDRLYILTNDDAPNGRLVAVDLADP 311 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-----TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-----CCEEEEeeCCCCCCcEEEEeccccc
Confidence 77888774 23333333332133445443 444544432 13356666676655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.4 Score=55.29 Aligned_cols=94 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc-CCCCCccCccccccceEEEcccCCCeEEEEEecCC--CcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS-AEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~ 391 (1395)
..|..|.+++.|..++.+|..+-.+..-..+.+....|. ......|+.......+. ...+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCCCe
Confidence 346678999999888888876655555444333322221 12233454333332222 22456689999999985 368
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 039790 392 LASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg 409 (1395)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999764
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.2 Score=47.29 Aligned_cols=141 Identities=10% Similarity=0.096 Sum_probs=82.0
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.|++++-. .| . |+.+. ++.|.+|++...+ .+..-..+....+.++... +.+++++. ....|.++
T Consensus 86 ~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~------~~~I~vgD-~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF------KNYILVGD-AMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE------TTEEEEEE-SSSSEEEE
T ss_pred eecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc------ccEEEEEE-cccCEEEE
Confidence 357889999876 33 4 44443 5889999998877 4444333332267777765 55777754 67778777
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC--CCCc-cee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN--PAST-RMD 529 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~--~~~~-~~~ 529 (1395)
.+... ...+..+..... ..+...+.+-.++..++.+..+|.|+++.+..... .... ++.
T Consensus 155 ~~~~~-----------~~~l~~va~d~~-------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 155 RYDEE-----------NNKLILVARDYQ-------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp EEETT-----------TE-EEEEEEESS--------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred EEEcc-----------CCEEEEEEecCC-------CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 55432 022222221111 11223455554556899999999999999974221 1223 678
Q ss_pred eeeeeeccccEEEE
Q 039790 530 YIAEFTVTMPILSL 543 (1395)
Q Consensus 530 ~i~~f~~~~~ils~ 543 (1395)
.+..|.....+.++
T Consensus 217 ~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 217 RISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEE-SS-EEEE
T ss_pred eEEEEECCCccceE
Confidence 88888888777777
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.95 E-value=5.3 Score=48.16 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCCcEEEEEeC--------------------CCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCC
Q 039790 377 GEITELSMCQWLTTRLASASL--------------------DGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~--------------------Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pd 435 (1395)
..-+++-|.|.. +.++|... ..++.+||+.+.+.++++.--. +..+..|.|.-+ |+
T Consensus 181 ~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~--P~ 257 (461)
T PF05694_consen 181 PFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD--PD 257 (461)
T ss_dssp -----EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS--TT
T ss_pred CCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC--CC
Confidence 345677788876 67777653 4579999999999999998433 325778888722 55
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc---cc-------cccceEEEEeCCCCEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL---ED-------AFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~---~~-------~~~~~~l~~S~dg~~LaS 505 (1395)
..+=++++-..++|..|--... ..|.....+......+... +. ..+..-+.+|-|.++|..
T Consensus 258 ~~~gFvg~aLss~i~~~~k~~~---------g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 258 ANYGFVGCALSSSIWRFYKDDD---------GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp --EEEEEEE--EEEEEEEE-ET---------TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred ccceEEEEeccceEEEEEEcCC---------CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 5554444435666665544333 4466555555443221110 11 223446788899888765
Q ss_pred Ee-CCCeEEEEEcCCCCC
Q 039790 506 NA-KKNAIYAIHMDYGPN 522 (1395)
Q Consensus 506 gs-~Dg~I~iWdl~~g~~ 522 (1395)
+. .+|.|+.||+.....
T Consensus 329 s~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EETTTTEEEEEE-SSTTS
T ss_pred EcccCCcEEEEecCCCCC
Confidence 55 799999999987543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.6 Score=60.60 Aligned_cols=96 Identities=18% Similarity=0.308 Sum_probs=64.9
Q ss_pred CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEE
Q 039790 186 NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMA 264 (1395)
Q Consensus 186 ~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~sla 264 (1395)
...++.++.+..|..+.. .....| .......|++-+.+| +||+|+.+|.||+||--+. ....|.+-..+|.+|+
T Consensus 551 ~n~lfriDpR~~~~k~v~---~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 551 DNSLFRIDPRLSGNKLVD---SQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred CCceEEeccCCCCCceee---cccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE
Confidence 445666766655422111 111122 233456777777777 6999999999999995432 3456778889999999
Q ss_pred EeeCCCCEEEEEECCCcEEEEECC
Q 039790 265 FFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 265 f~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
. +.||+||+..|.. .|.+++..
T Consensus 626 v-t~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 626 V-TADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred e-cCCCcEEEEeecc-eEEEEEEe
Confidence 9 9999998877654 67777753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.9 Score=47.12 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=50.0
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLD-----GTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~D-----g~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.|.+|. .||+|| .+|...-.| |.|-|||.+.+ ..+..|..|.- ....|.|. +||+.|+.++
T Consensus 113 RHfyGHG------vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi-GpHev~lm----~DGrtlvvan 180 (366)
T COG3490 113 RHFYGHG------VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI-GPHEVTLM----ADGRTLVVAN 180 (366)
T ss_pred ceeeccc------ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCc-CcceeEEe----cCCcEEEEeC
Confidence 3455676 589999 566554333 67999999876 66778888865 78899999 9999998754
Q ss_pred cCCCeEEEE
Q 039790 444 PLNRELKIW 452 (1395)
Q Consensus 444 s~Dg~I~IW 452 (1395)
|-|..-
T Consensus 181 ---GGIeth 186 (366)
T COG3490 181 ---GGIETH 186 (366)
T ss_pred ---Cceecc
Confidence 555554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.73 E-value=15 Score=47.98 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=73.8
Q ss_pred eEEEEEecCCCcEEEEEeC----------CCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 379 ITELSMCQWLTTRLASASL----------DGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~----------Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
|.++.|..|...+++.|.. .|+|.||.+..+..+.....+ +| .|.++.- -+|++|+. -+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-av~aL~~-----fngkllA~---In 847 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-AVYALVE-----FNGKLLAG---IN 847 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-ceeehhh-----hCCeEEEe---cC
Confidence 4555688774478888763 578888887774444443322 23 6777665 36777764 56
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..|+||++.+. +.++.=..+...+ ..+.+.-.|..++.|..-+.|.+..+...
T Consensus 848 ~~vrLye~t~~------------~eLr~e~~~~~~~---------~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 848 QSVRLYEWTTE------------RELRIECNISNPI---------IALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred cEEEEEEcccc------------ceehhhhcccCCe---------EEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 89999999876 4443333333222 24777888999999998888888777653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.72 E-value=17 Score=46.12 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-Eec--cCCC--CeEE-EEEeeCCCCEEEEEE------CCCcEEEEECCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLR--GHTQ--RVTD-MAFFAEDVHLLASAS------VDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~--~H~~--~V~s-laf~s~dg~~LaSgs------~DgtV~IWdl~tg~~~~ 294 (1395)
+..|+.++.||.|.-+|..+|++. .+. .+.. .+.+ -.+ .++. ++.+. .+|.|+.+|..+|+.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeE
Confidence 456777888999999999998643 221 1211 1221 111 1344 44443 37899999999998543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.7 Score=55.65 Aligned_cols=156 Identities=9% Similarity=0.053 Sum_probs=88.2
Q ss_pred CCEEEEEEecCCCEEEEEE------cCC--eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-CcEEEE--
Q 039790 217 GLVLGRQIAVNRNYICYGL------KLG--NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-GRFFIW-- 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs------~DG--~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-gtV~IW-- 285 (1395)
..+...++++||+.+|+.- .|+ .|.+++........+.+. ..+.-.| +++|..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsW-spDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSW-SLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceE-CCCCCceEEEecCcceEEEecc
Confidence 4677889999999998876 244 455555533333333333 3788889 8998888777543 223333
Q ss_pred ---------ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 286 ---------NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 286 ---------dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
++..+. ... .....+..+.|+|+|.++++... +.+++--......+. .
T Consensus 427 ~~~gql~~~~vd~ge---------------~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~-~---- 483 (591)
T PRK13616 427 PATGQLARTPVDASA---------------VAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQ-Y---- 483 (591)
T ss_pred CCCceEEEEeccCch---------------hhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCc-e----
Confidence 322221 000 22456889999999998887763 555552222211111 0
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.+.....+..+-...+.++.|..++ . |+.+..++...+|.+.
T Consensus 484 -------~l~~~~~l~~~l~~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 484 -------ALTNPREVGPGLGDTAVSLDWRTGD-S-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred -------eecccEEeecccCCccccceEecCC-E-EEEEecCCCCceEEEe
Confidence 0111122223344456889999987 5 4455555555566543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.3 Score=43.34 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=49.7
Q ss_pred eEEEEEe---cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 379 ITELSMC---QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 379 V~slafs---pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
|++|+++ -||.+.|+.||.|..||+|+ ....+..+.-+. .|++++-. .. ..++.+- .+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~--~v~~L~~~----~~-~~F~Y~l-~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETD--KVTSLCSL----GG-GRFAYAL-ANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEeccc--ceEEEEEc----CC-CEEEEEe-cCCEEEEEeCc
Confidence 4555554 45667999999999999997 447778887664 68999887 44 4455544 89999999854
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.4 Score=54.25 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCcEEEEEecCC------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 435 QHIVLITGGPLN------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 435 dg~~L~s~Gs~D------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+|...+.|| .+ ..|..||..+. ..|..+..+....... -...-+|.+.+.|+.
T Consensus 463 ~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~---------~~W~~~~~m~~~r~~~-----------~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 463 KDDIYVVCD-IKDEKNVKTCIFRYNTNTY---------NGWELITTTESRLSAL-----------HTILHDNTIMMLHCY 521 (557)
T ss_pred CCEEEEEeC-CCCCCccceeEEEecCCCC---------CCeeEccccCcccccc-----------eeEEECCEEEEEeee
Confidence 566666666 43 24677887762 2466555544332211 111237888899998
Q ss_pred CC--eEEEEEcCCC
Q 039790 509 KN--AIYAIHMDYG 520 (1395)
Q Consensus 509 Dg--~I~iWdl~~g 520 (1395)
++ .+..||..++
T Consensus 522 ~~~~~~e~yd~~~~ 535 (557)
T PHA02713 522 ESYMLQDTFNVYTY 535 (557)
T ss_pred cceeehhhcCcccc
Confidence 88 5666666554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.6 Score=55.69 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=40.9
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEecc--CCCCeEEEEEeeCCCCEEEEEECC------CcEEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRG--HTQRVTDMAFFAEDVHLLASASVD------GRFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~D------gtV~IWdl~tg~ 291 (1395)
..+.+++.|+.+ ..|..||..++....+.. +.....++++ -++.+.++||.| .++..||...+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE--ECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345667777776 367788888874332221 2233445554 367889999999 357788888766
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.3 Score=43.38 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..|+.|+.|..||+|+ . +..++.+. ..+.|.++.-... .++++|..+|
T Consensus 16 ~eLlvGs~D~~IRvf~-~---------~e~~~Ei~---------------------e~~~v~~L~~~~~-~~F~Y~l~NG 63 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK-G---------DEIVAEIT---------------------ETDKVTSLCSLGG-GRFAYALANG 63 (111)
T ss_pred ceEEEecCCcEEEEEe-C---------CcEEEEEe---------------------cccceEEEEEcCC-CEEEEEecCC
Confidence 6789999999999988 1 12222221 2245555544444 6799999999
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCC---CEEEEEECCCcEEE
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDV---HLLASASVDGRFFI 284 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg---~~LaSgs~DgtV~I 284 (1395)
+|-||+-.... ...+ ....+.+++++..++ .-|++|-.+|.|-+
T Consensus 64 TVGvY~~~~Rl-WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 64 TVGVYDRSQRL-WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEeCccee-eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 99999864432 2222 233477887755443 26888988888743
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.45 Score=61.60 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=69.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCce--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITALR--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
...-+.+++.|+..|.|-..|..+... +.-..-.++|++++| +.+|.+++.|-.+|.|.+||+..++
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k---------- 163 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAK---------- 163 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEccCCc----------
Confidence 333556899999999999988877532 222234579999999 9999999999999999999999877
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
.+..+...+.....+-.+.|..++..++.+-.+|.++
T Consensus 164 -~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 164 -ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred -ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceE
Confidence 2222222333333333445555555455444455433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.4 Score=46.37 Aligned_cols=259 Identities=15% Similarity=0.124 Sum_probs=117.2
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEe----ccCCCCeEEEEEeeC----CCCEEEEEECC-------
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLL----RGHTQRVTDMAFFAE----DVHLLASASVD------- 279 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l----~~H~~~V~slaf~s~----dg~~LaSgs~D------- 279 (1395)
.-+.++|.|||+++++ -..|.|++++..... +..+ .........++| .+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~-~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAF-HPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE--TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCccccee-ccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999987765 569999999933222 1112 233456899999 44 24444443321
Q ss_pred -CcEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEeC-------------CeEEEEE
Q 039790 280 -GRFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAIG-------------NRILKID 342 (1395)
Q Consensus 280 -gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~~-------------~~ii~~d 342 (1395)
..|.-|.+..+. . ........+.... ........+.|.|++..++++|.. ++|++++
T Consensus 81 ~~~v~r~~~~~~~----~--~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 81 DNRVVRFTLSDGD----G--DLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp EEEEEEEEEETTS----C--EEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred ceeeEEEeccCCc----c--ccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 234445554431 0 0000111111111 233344569999999655555542 3455555
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC-CCcEEEE-EeCCCcEEEEeCCCC-----------
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW-LTTRLAS-ASLDGTVKIWDDRKS----------- 409 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd-g~~~LaS-gs~Dg~IrIWDl~sg----------- 409 (1395)
..... -.+.++. . .........-.|+.. ...++|+|. | .++++ -+.|+.=.|--+..|
T Consensus 155 ~dG~~-----p~dnP~~-~-~~~~~~~i~A~GlRN-~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~ 225 (331)
T PF07995_consen 155 PDGSI-----PADNPFV-G-DDGADSEIYAYGLRN-PFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGG 225 (331)
T ss_dssp TTSSB------TTSTTT-T-STTSTTTEEEE--SE-EEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSS
T ss_pred ccCcC-----CCCCccc-c-CCCceEEEEEeCCCc-cccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCC
Confidence 32210 0000100 0 000011122223443 568999998 5 44433 223332222222211
Q ss_pred ------------------ceeEEecCCCCCCeeEEEEeecCC-C--CCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 410 ------------------TPLAVLRPYDGHPVNCVTFLIGPH-P--QHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 410 ------------------~~l~tl~~h~~~~V~sV~fs~~~~-p--dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.++..+..|. .+..+.|..... | .|.++++ .-..+.|...++..+ ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~~~~~-~~~~~~i~~~~~~~~---------~~ 293 (331)
T PF07995_consen 226 PKYSGPPIGDAPSCPGFVPPVFAYPPHS--APTGIIFYRGSAFPEYRGDLFVA-DYGGGRIWRLDLDED---------GS 293 (331)
T ss_dssp CSTTSS-ECTGSS-TTS---SEEETTT----EEEEEEE-SSSSGGGTTEEEEE-ETTTTEEEEEEEETT---------EE
T ss_pred CCCCCCccccccCCCCcCccceeecCcc--ccCceEEECCccCccccCcEEEe-cCCCCEEEEEeeecC---------CC
Confidence 2445565553 577787762211 1 4455554 424566766666533 00
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
......+-... ..-...+.+.+||.++++...+|.||
T Consensus 294 ~~~~~~~~~~~--------~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 294 VTEEEEFLGGF--------GGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEECTTS--------SS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccceEEccccC--------CCCceEEEEcCCCeEEEEECCCCeEe
Confidence 01111111111 10123588889999888888888775
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.24 Score=61.89 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=59.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+++++|+|.. ..|+.|-.-|.+.+|...+.+.-.....|.. +|..+.|| ++|..|+++. .-|.|.+|.+.-
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a-~i~~l~wS----~~G~~l~t~d-~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPA-PIQGLDWS----HDGTVLMTLD-NPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCC-CceeEEec----CCCCeEEEcC-CCceeEEEEeee
Confidence 5679999976 6888888889999999777766556667886 99999999 9999999954 889999998874
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=11 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=43.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+++..+| ++.+++-..|+|...|..+|+.+.+++-... .|+|+||- .++-..|.+++
T Consensus 217 m~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFg---Gkn~d~~yvT~ 273 (310)
T KOG4499|consen 217 MTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFG---GKNLDILYVTT 273 (310)
T ss_pred ceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEec---CCCccEEEEEe
Confidence 3444566 7888888889999999999999999998876 99999996 13334454443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.77 E-value=12 Score=42.64 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=92.9
Q ss_pred CEEEEEEecCCCEEEEEE---cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE-CCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGL---KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN-ITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs---~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd-l~tg~~~ 293 (1395)
.+...++++||+.+|... ....++++.........+.+. .+..-.| .+++.+.+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~-d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSW-DPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccc-cCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 677889999999887765 334566666554444444333 6788889 77777766666666777774 333331
Q ss_pred CCCcccccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 294 EDKPQILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
....+...... .|..+.++|+|.++++... ++.+++--..+...+.. ..+..+.
T Consensus 101 -----------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~-----------~~l~~~~ 158 (253)
T PF10647_consen 101 -----------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP-----------RRLTGPR 158 (253)
T ss_pred -----------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc-----------ceeccce
Confidence 01111111111 7889999999998887773 34444443333222200 0111223
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASL-DGTVKI 403 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrI 403 (1395)
.........+++++|..++ .+++.+.. ++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSAGGPVVR 192 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCCCCceeE
Confidence 3333456789999999988 55555544 333433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=7.7 Score=49.78 Aligned_cols=165 Identities=19% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE------CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 256 HTQRVTDMAFFAEDVHLLASAS------VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
....+.+.++ +++|+.++..- .|+.-.||-...+.. ...+... . ....-.|+|+++.+
T Consensus 348 ~~~~vsspai-SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------------~~~lt~g-~-~~t~PsWspDG~~l 411 (591)
T PRK13616 348 QMGNITSAAL-SRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------------AVQVLEG-H-SLTRPSWSLDADAV 411 (591)
T ss_pred cccCcccceE-CCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------------ceeeecC-C-CCCCceECCCCCce
Confidence 3346788999 89999887765 244434443322220 0111111 1 25678999998888
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE---EeC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI---WDD 406 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI---WDl 406 (1395)
.++..++.+.++..... .+..|- ..++. ..... ...+.|..+.||||| .+|+... +|.|.+ -..
T Consensus 412 w~v~dg~~~~~v~~~~~-~gql~~------~~vd~--ge~~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPA-TGQLAR------TPVDA--SAVAS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred EEEecCcceEEEeccCC-CceEEE------EeccC--chhhh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeC
Confidence 87766555554433211 111110 00000 00111 235679999999999 5665554 577766 443
Q ss_pred CCCc-ee---EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 407 RKST-PL---AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 407 ~sg~-~l---~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
..|. .+ ..+..-.+..+.++.|. .++..+ ++. .++...+|.+.
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~----~~~~L~-V~~-~~~~~~v~~v~ 525 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWR----TGDSLV-VGR-SDPEHPVWYVN 525 (591)
T ss_pred CCCceeecccEEeecccCCccccceEe----cCCEEE-EEe-cCCCCceEEEe
Confidence 4453 11 11222222146889998 777754 433 34444556543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.58 E-value=4.4 Score=44.45 Aligned_cols=90 Identities=11% Similarity=0.002 Sum_probs=59.7
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEe--CCCCc-----eeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWD--DRKST-----PLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWD--l~sg~-----~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
--+.++|+.+...+.++-+.+-+|.-|| ..+|. .+..++. ......-.++.. .+|...+++= ..+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID----~eG~L~Va~~-ng~ 233 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID----TEGNLYVATF-NGG 233 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc----cCCcEEEEEe-cCc
Confidence 3457889888766777777888898888 44553 3333332 111122334444 5677666654 778
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+|.-.|..+| +.+.+++.....+.+
T Consensus 234 ~V~~~dp~tG------------K~L~eiklPt~qits 258 (310)
T KOG4499|consen 234 TVQKVDPTTG------------KILLEIKLPTPQITS 258 (310)
T ss_pred EEEEECCCCC------------cEEEEEEcCCCceEE
Confidence 9999999999 999999988766543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.27 E-value=3.1 Score=52.94 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=77.7
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceE---EeccCCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRS---LLRGHTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~---~l~~H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+.-|.-++..++-+....+.|||...+.+. .| ...+.|.++.|. .++++.+++.|..+.|.+|--........-|
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 334444554444455568999999988522 23 457889999994 4789999999999999999654322111111
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~ 343 (1395)
.=..+..+.+.......+...+|..+| .+++|.++.+.+++.
T Consensus 114 --~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 114 --SWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGSGNQLFVFDK 155 (631)
T ss_pred --ccceeEEEEeecCCCCCccceeEecCC--eEEEEeCCEEEEECC
Confidence 112445555555556778899999998 566777777777653
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=37 Score=44.69 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCEEEEEEecCCCEEEEEEcC-----CeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECC------CcEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKL-----GNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVD------GRFF 283 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~D-----G~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D------gtV~ 283 (1395)
-.+..+.|+|||++|+++... ..|+|.|+.+|. ...+.+ .-..++| .+|++.|+.+..+ ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w-~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVW-ANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEE-eeCCCEEEEEEecCCCCCCCEEE
Confidence 345667899999999987442 358899998875 222222 1256999 7787766555432 3578
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
.|++.++.
T Consensus 203 ~h~lgt~~ 210 (686)
T PRK10115 203 RHTIGTPA 210 (686)
T ss_pred EEECCCCh
Confidence 88888773
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.23 E-value=2 Score=52.89 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCEEEEEEecCCCEE-EEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYI-CYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~L-asGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..|.+++|. ||+.+ .+.. .+|.+++=|- ..-|.-.-|..+.|.+. +...|+..-....|.||.+.-.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467788886 44443 3332 2333322111 22334456999999432 2224555566778999998754
Q ss_pred CCCCCCcccccceEEEE--EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 291 PDEEDKPQILGKIVVAI--QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l--~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
..+. .+++..- .+.....-.-..+.|||....+.+....+.-+..........
T Consensus 93 ~~e~------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr------------------- 147 (671)
T PF15390_consen 93 TTER------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR------------------- 147 (671)
T ss_pred cccc------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce-------------------
Confidence 3222 1222211 111111122335889999986666666665555544332221
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.--...+.|.|.+|..||.++++..+..=.-+|||-..
T Consensus 148 VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 148 VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 2222246678999999999955555555555678999543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.28 Score=60.11 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee-EEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN-CVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~-sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
...|.-+.|+|.. .+||.+..+|.|-+..+. ++.+.++.-|+. .++ +++|. |||+.|+++ -.||+|+|-|+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~-~v~~sL~W~----~DGkllaVg-~kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGE-NVTASLCWR----PDGKLLAVG-FKDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCC-ccceeeeec----CCCCEEEEE-ecCCeEEEEEc
Confidence 3467889999987 799999999999999987 888999987765 666 99998 999999885 49999999999
Q ss_pred CCC
Q 039790 455 AEE 457 (1395)
Q Consensus 455 ~tg 457 (1395)
.++
T Consensus 92 e~~ 94 (665)
T KOG4640|consen 92 EKG 94 (665)
T ss_pred cCC
Confidence 887
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.35 Score=62.57 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=74.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
.+++.|+..|.|-..|.+..-+-.....+...+|++++|+ -+|..++. |-.+|.|.+||+..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn----~dg~~l~~-G~~~G~V~v~D~~~~------------ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN----QDGSLLLA-GLGDGHVTVWDMHRA------------ 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec----CCCceecc-ccCCCcEEEEEccCC------------
Confidence 5889999999999888765311112222333499999998 88888877 458999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++.+..++..... +.. +.+..++..++++...|. +|.+...
T Consensus 163 k~l~~i~e~~ap~t~-----vi~-v~~t~~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTG-----VIF-VGRTSQNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred cceeeeeecCCccce-----EEE-EEEeCCCcEEEEccCCCc--eEEEEec
Confidence 888888877765433 222 344455667888888886 5766553
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.94 E-value=20 Score=40.84 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=113.5
Q ss_pred eeCCC-CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 212 YISDP-GLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 212 l~~h~-~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+.+|. ..|..+...-+-.++..|-.--..-+|+.... ....+-.-.+-+.++.| .+++...+..+.-++|.|+
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~v---se~yvyvad~ssGL~IvDI 113 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRV---SEEYVYVADWSSGLRIVDI 113 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEe---cccEEEEEcCCCceEEEec
Confidence 44454 44444444433334433322222334554421 12223334556788888 4567777888888999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.+... |.. +.++ ..+ .+.-+|.-.|++.+++..++.++++|.....+.. .
T Consensus 114 S~P~s----P~~-------~~~l-nt~--gyaygv~vsGn~aYVadlddgfLivdvsdpssP~---------------l- 163 (370)
T COG5276 114 STPDS----PTL-------IGFL-NTD--GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ---------------L- 163 (370)
T ss_pred cCCCC----cce-------eccc-cCC--ceEEEEEecCCEEEEeeccCcEEEEECCCCCCce---------------e-
Confidence 98651 110 1111 111 2345566677788888889999999987644321 0
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..........-+.++.| | ++-..+..|+-+.|-|+.... .+.... ... .++++..+ ++..+++. .
T Consensus 164 -agrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~-g~~sv~vs----dnr~y~vv-y- 231 (370)
T COG5276 164 -AGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP-GTYSVSVS----DNRAYLVV-Y- 231 (370)
T ss_pred -eeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC-ceEEEEec----CCeeEEEE-c-
Confidence 11222233344677776 3 567777789999999998753 222222 222 58888887 55555554 3
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
|--+.+-|..+.
T Consensus 232 -~egvlivd~s~~ 243 (370)
T COG5276 232 -DEGVLIVDVSGP 243 (370)
T ss_pred -ccceEEEecCCC
Confidence 455777777655
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.87 E-value=42 Score=44.22 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCCEEEEeCcCCCCCee-ee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEE
Q 039790 167 APPVRLRSSKVPKGRHL-IG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRIL 243 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L-~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIW 243 (1395)
.+++.+|-....+|... .+ ++.+|.+.....|+....+ .....+-+...-..|+.+-++| +|++|+.-|.=.+.
T Consensus 256 ~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~--~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi 332 (1096)
T KOG1897|consen 256 QSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGL--DLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLI 332 (1096)
T ss_pred CceEEEcccccCCccEEEEecCCCcEEEEEeecccccccce--EEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeE
Confidence 45666666555555544 44 4466666665555543322 1122333455555666555555 78889888777777
Q ss_pred ECCCCc--------eEEeccCCCCeEEEEEeeCC---CCEEEEEE---CCCcEEEEECCC
Q 039790 244 NIITAL--------RSLLRGHTQRVTDMAFFAED---VHLLASAS---VDGRFFIWNITE 289 (1395)
Q Consensus 244 d~~~~~--------~~~l~~H~~~V~slaf~s~d---g~~LaSgs---~DgtV~IWdl~t 289 (1395)
.+.+.. +.++ ..-++|.+++.-..+ +..|+||+ .||++||..-.-
T Consensus 333 ~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi 391 (1096)
T KOG1897|consen 333 KLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI 391 (1096)
T ss_pred EccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc
Confidence 766531 1122 233588888874333 34567765 488999876543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=92.69 E-value=23 Score=40.67 Aligned_cols=212 Identities=10% Similarity=0.084 Sum_probs=111.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE---------------eccCCCCeEEEE-EeeCCCCEEEEEECCCcE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSL---------------LRGHTQRVTDMA-FFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~---------------l~~H~~~V~sla-f~s~dg~~LaSgs~DgtV 282 (1395)
|..+...++-+.|++-+ ||.++++++..-.... .......+...+ -....+...+.+...++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88888888777666544 5999999987631111 111222333333 112344445555556699
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.||.......... .....+. -...+..++|. +..+++|..+....++.........+......
T Consensus 117 ~i~~~~~~~~~f~------~~~ke~~----lp~~~~~i~~~---~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~---- 179 (275)
T PF00780_consen 117 LIYEWNDPRNSFS------KLLKEIS----LPDPPSSIAFL---GNKICVGTSKGFYLIDLNTGSPSELLDPSDSS---- 179 (275)
T ss_pred EEEEEECCccccc------ceeEEEE----cCCCcEEEEEe---CCEEEEEeCCceEEEecCCCCceEEeCccCCc----
Confidence 9998876421000 1111221 12556678888 23566666777888887643222111111000
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
............+..+.... + .+|++ .|..-.+.| ..|...+ .+.-. . .+.++++. ..||+
T Consensus 180 ----~~~~~~~~~~~~~~~~~~~~-~-e~Ll~--~~~~g~fv~-~~G~~~r~~~i~W~-~-~p~~~~~~------~pyli 242 (275)
T PF00780_consen 180 ----SSFKSRNSSSKPLGIFQLSD-N-EFLLC--YDNIGVFVN-KNGEPSRKSTIQWS-S-APQSVAYS------SPYLI 242 (275)
T ss_pred ----chhhhcccCCCceEEEEeCC-c-eEEEE--ecceEEEEc-CCCCcCcccEEEcC-C-chhEEEEE------CCEEE
Confidence 00001111222344444433 3 45554 344444444 3454443 33322 2 56777775 45888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
+.+ ++.|.||++.++ ++++++.+..
T Consensus 243 ~~~--~~~iEV~~~~~~------------~lvQ~i~~~~ 267 (275)
T PF00780_consen 243 AFS--SNSIEVRSLETG------------ELVQTIPLPN 267 (275)
T ss_pred EEC--CCEEEEEECcCC------------cEEEEEECCC
Confidence 755 567999999999 9999998655
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.7 Score=48.57 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=90.1
Q ss_pred EEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-------CeEEEE
Q 039790 261 TDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-------QEILML 332 (1395)
Q Consensus 261 ~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-------~~lla~ 332 (1395)
..+-.+..+..+|. .|+.-..++--|+..|+ .+.. ..-++.. .|.|.|+. ..-+++
T Consensus 470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGk-----------vvee---W~~~ddv--vVqy~p~~kf~qmt~eqtlvG 533 (776)
T COG5167 470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-----------VVEE---WDLKDDV--VVQYNPYFKFQQMTDEQTLVG 533 (776)
T ss_pred hhceeecCCcceEEecCCCcccceeeecccce-----------eeeE---eecCCcc--eeecCCchhHHhcCccceEEe
Confidence 33344345555544 34445567777777776 2222 2222222 45666643 245677
Q ss_pred EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE-----EEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 333 AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT-----ELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 333 g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~-----slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
-++..+.++|.+..+.. +... .....++ |..-... .++|.||..|-||+|| |
T Consensus 534 lS~~svFrIDPR~~gNK-------------------i~v~-esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyD-R 590 (776)
T COG5167 534 LSDYSVFRIDPRARGNK-------------------IKVV-ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYD-R 590 (776)
T ss_pred ecccceEEecccccCCc-------------------eeee-eehhccccccccccccccC--ceEEEecCCCceeeeh-h
Confidence 78889999998665421 1111 1112222 2222233 3999999999999999 4
Q ss_pred CCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 408 KSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 408 sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-|...+ -+.+-. ..|..|..+ .+|.+++++| ...|.+-|+.-.
T Consensus 591 ig~rAKtalP~lG-~aIk~idvt----a~Gk~ilaTC--k~yllL~d~~ik 634 (776)
T COG5167 591 IGKRAKTALPGLG-DAIKHIDVT----ANGKHILATC--KNYLLLTDVPIK 634 (776)
T ss_pred hcchhhhcCcccc-cceeeeEee----cCCcEEEEee--cceEEEEecccc
Confidence 444333 344444 489999998 8999999877 567888887644
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.45 E-value=12 Score=45.25 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=95.0
Q ss_pred CCCEEEEEE-cCCeEEEEECCCC----c-eEEecc---C--CCC--eEEEEEeeCCCCEEEEEECC------CcEEEEEC
Q 039790 227 NRNYICYGL-KLGNIRILNIITA----L-RSLLRG---H--TQR--VTDMAFFAEDVHLLASASVD------GRFFIWNI 287 (1395)
Q Consensus 227 dg~~LasGs-~DG~IrIWd~~~~----~-~~~l~~---H--~~~--V~slaf~s~dg~~LaSgs~D------gtV~IWdl 287 (1395)
+.++|+..+ ..+.|+|+|+.+. . .+.+.. + .+- -..+.. -++|.+++|+-.| |.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc-lp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC-LPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee-cCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 467777776 6789999999864 1 222221 1 111 111111 4678888886432 45777776
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--------------------CCeEEEEEcCCCC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--------------------GNRILKIDSNRVG 347 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--------------------~~~ii~~d~~~~~ 347 (1395)
++.+ ..-....-.......+.+-|.|..+.++++.. +..+.+||...
T Consensus 165 ~tf~-----------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-- 231 (461)
T PF05694_consen 165 ETFE-----------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-- 231 (461)
T ss_dssp TT-------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT--
T ss_pred cccc-----------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC--
Confidence 6543 11111111122345567888887776665543 23344444322
Q ss_pred ccccccCCCCCccCccccccceEEEccc--CCCeEEEEEecC--CCcEEEEEeCCCcEEEE-eCCCCc----eeEEecCC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKH--DGEITELSMCQW--LTTRLASASLDGTVKIW-DDRKST----PLAVLRPY 418 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h--~~~V~slafspd--g~~~LaSgs~Dg~IrIW-Dl~sg~----~l~tl~~h 418 (1395)
.+.++.+.-- ......|.|..+ ...-|+.+-..+.|..| ....+. .+-.+...
T Consensus 232 ------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 232 ------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp ------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred ------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 1113333211 123556666443 32334444445555444 323331 12222111
Q ss_pred -----------------CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 419 -----------------DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 419 -----------------~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
-. -|+.+..| .|.++|..++-.+|.||.||+... ...+.+..+..-+..
T Consensus 294 ~v~~~~lp~ml~~~~~~P~-LitDI~iS----lDDrfLYvs~W~~GdvrqYDISDP---------~~Pkl~gqv~lGG~~ 359 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPP-LITDILIS----LDDRFLYVSNWLHGDVRQYDISDP---------FNPKLVGQVFLGGSI 359 (461)
T ss_dssp E--SS---GGGGGG-EE-------EEE-----TTS-EEEEEETTTTEEEEEE-SST---------TS-EEEEEEE-BTTT
T ss_pred ccCcccccccccccccCCC-ceEeEEEc----cCCCEEEEEcccCCcEEEEecCCC---------CCCcEEeEEEECcEe
Confidence 12 47899999 999999998888999999999876 445666555433221
Q ss_pred cccccccc--------cceEEEEeCCCCEEEEE
Q 039790 482 ELRLEDAF--------FNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 482 i~~~~~~~--------~~~~l~~S~dg~~LaSg 506 (1395)
. ...... -.+.+.+|.||+.|...
T Consensus 360 ~-~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 360 R-KGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp T--B--TTS------S----EEE-TTSSEEEEE
T ss_pred c-cCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 1 101111 12467788888776554
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.19 Score=54.77 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAE 456 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~t 456 (1395)
.+..+++.||.||.|++.-++.+.....|....+..+..+ ..+++|.++ -|.|..++.|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv----~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVV----GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEe----cCCceEEeeccccchhhhhcchhh
Confidence 5899999999999999988887777766763244444443 334444443 02555555565543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.30 E-value=20 Score=45.59 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccC-CCCeE----------EEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGH-TQRVT----------DMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H-~~~V~----------slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..|+.++.++.|+-+|..+|++. .+... ...+. .+++ .+..++.++.|+.|.-.|..+|+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCC
Confidence 456777777888888898888533 22211 01111 1233 23456677788888888888887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=4 Score=52.00 Aligned_cols=52 Identities=6% Similarity=-0.081 Sum_probs=27.0
Q ss_pred ecCCCEEEEEEcCC------eEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECC
Q 039790 225 AVNRNYICYGLKLG------NIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 225 Spdg~~LasGs~DG------~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
..++..++.|+.++ .+..||..++.-..+..- ......+. -++.+++.||.+
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~---~~~~lyv~GG~~ 352 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV---FNNRIYVIGGIY 352 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE---ECCEEEEEeCCC
Confidence 34666777776542 466788777643333221 11112222 256666667654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.16 E-value=12 Score=42.86 Aligned_cols=190 Identities=7% Similarity=0.016 Sum_probs=111.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+-...|.++.|+|+.+.|++......-.||=-..|. +. .+.+- ..--.|.| -.++.+.++-=.++.++++.+..+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Iey-ig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEY-IGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEE-ecCCEEEEEehhcceEEEEEEcCC
Confidence 444559999999999988888777766666545553 33 23332 22345777 677788888888999999988876
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
...... ...-..+....+.....-.++|.+.+..++++-..+-+.++......... ....-... ..
T Consensus 161 t~~~~~----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l--------~~~~~~~~--~~ 226 (316)
T COG3204 161 TTVISA----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL--------SVHASLDP--TA 226 (316)
T ss_pred ccEEec----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc--------ccccccCc--cc
Confidence 411100 01111222333334555679999999888887766655554433211110 00000000 00
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG 420 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~ 420 (1395)
...-.-..|..+.|++..+++|+-+..++.+.-.|. .|.++..+.-+.+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g 275 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKG 275 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccC
Confidence 000011347788898776678888888998888885 4555655554443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=13 Score=42.04 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=45.5
Q ss_pred EEecCCCEEEEEEcC-----CeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 223 QIAVNRNYICYGLKL-----GNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 223 a~Spdg~~LasGs~D-----G~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.||+||.+|...-.| |.|-|||...+ .+..+..|.-.-..|.| ..||..|+.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l-m~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL-MADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE-ecCCcEEEEeC--Cceecc
Confidence 389999988765333 78999999876 35577778777788999 89999888764 455554
|
|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.96 E-value=54 Score=43.65 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc------hHHHHHHHHHHHH
Q 039790 1037 EKLERDRMQQITNLITNTINKDL------PAILEKTLKKEIA 1072 (1395)
Q Consensus 1037 ~~~~~~rq~~ll~~vs~~l~~~~------~~~~E~~l~~ei~ 1072 (1395)
..+.++..+.|..-|.++|+... ..+-|++|+.+|.
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp 1507 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELP 1507 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC
Confidence 33445566788888888887543 3455666666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=27 Score=40.12 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=108.6
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.|.-|...+.+...+... +-+|...-.. ...+.|-...|.++.| +++.+.|.+......-.||=-.+|.
T Consensus 47 ~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTy-np~~rtLFav~n~p~~iVElt~~Gd----- 118 (316)
T COG3204 47 PCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTY-NPDTRTLFAVTNKPAAIVELTKEGD----- 118 (316)
T ss_pred eeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceee-CCCcceEEEecCCCceEEEEecCCc-----
Confidence 333344444344444444 4455544321 2224555566999999 7888888888777777777766666
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.+..+.+.+-++ .-.|.|...+.+.++--.+..++.+-......... .....-.+.......
T Consensus 119 ------lirtiPL~g~~D--pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~----------~~~~~i~L~~~~k~N 180 (316)
T COG3204 119 ------LIRTIPLTGFSD--PETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS----------AKVQKIPLGTTNKKN 180 (316)
T ss_pred ------eEEEecccccCC--hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe----------ccceEEeccccCCCC
Confidence 344443333222 23567766665555544555555554432211100 000000011122225
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
...-.++|.+.+ ..|..+-.-.-++||.+..+. .++....+.. ..|.++.|. +....|++-+..++
T Consensus 181 ~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~----~~~~~LLVLS~ESr 255 (316)
T COG3204 181 KGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN----AITNSLLVLSDESR 255 (316)
T ss_pred cCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec----CCCCcEEEEecCCc
Confidence 567789999998 566666666667776654322 1111111211 147778886 44444444455778
Q ss_pred eEEEEECCC
Q 039790 448 ELKIWASAE 456 (1395)
Q Consensus 448 ~I~IWDl~t 456 (1395)
.|.-.|...
T Consensus 256 ~l~Evd~~G 264 (316)
T COG3204 256 RLLEVDLSG 264 (316)
T ss_pred eEEEEecCC
Confidence 777777654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=4 Score=52.27 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
.++...+.||.+ ..+..||..++.-..+.. .......+. -+|.+.+.||.++ +|..||..+..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~---~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV---IDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE---ECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 467777777754 347778887764322221 111122223 3778888888764 47889988765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.86 E-value=17 Score=46.34 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=90.8
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCc
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v 317 (1395)
-.|+||++.+..+..+.-..+.+..+.| + +...|++...||+++||++..... .... +-........+
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgW-s-~~eeLI~v~k~g~v~Vy~~~ge~i-e~~s---------vg~e~~~~~I~ 131 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGW-S-DDEELICVQKDGTVHVYGLLGEFI-ESNS---------VGFESQMSDIV 131 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecc-c-CCceEEEEeccceEEEeecchhhh-cccc---------cccccccCcee
Confidence 3588999887665544444448889999 4 456788899999999999875331 1100 00000011122
Q ss_pred cEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccc-c-CCCCCccCccccccc---------------------------
Q 039790 318 PRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERF-S-AEEPLKCPVDELING--------------------------- 368 (1395)
Q Consensus 318 ~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~-s-~~~~~~~~~~~~~~~--------------------------- 368 (1395)
.+..|+ . -+++...++.++.+........... . +.....+.-|....+
T Consensus 132 ec~~f~-~--GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q 208 (829)
T KOG2280|consen 132 ECRFFH-N--GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ 208 (829)
T ss_pred EEEEec-C--ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc
Confidence 223333 2 2555555555555543221100000 0 000001111111111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
...+..-...+..++.|+.. .+|+-=..+|.|.+-++...+++..+..........++|+
T Consensus 209 ~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 209 LHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred ccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 11111112456677788877 7888888889888888877777777763222233455554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.1 Score=54.55 Aligned_cols=112 Identities=5% Similarity=-0.076 Sum_probs=69.8
Q ss_pred CEEEEEEecCCCEEEEEE--cCCeEEEEECCCCc------eEEeccC------CCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 218 LVLGRQIAVNRNYICYGL--KLGNIRILNIITAL------RSLLRGH------TQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~------~~~l~~H------~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.|..+.+.+|++..++-. .+-.|..||+..-+ ...|..| ..-+.++.|++.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 345556667777655543 33478889987631 1222222 234567778443344567788899999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~ 343 (1395)
|..+..-.. .. .........++++|+|.|..++++-..+.++.|..
T Consensus 182 V~~~~~~~~-------------~v-~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQ-------------NV-TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhh-------------hh-cccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 887764320 00 01223456789999999998888888888887755
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.78 E-value=35 Score=38.96 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=105.7
Q ss_pred eeeeeCCC-CCEEEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEeccCCCCeE--EEEEeeCCCCEEEEEECCCcEE
Q 039790 209 ITKYISDP-GLVLGRQIAVNRNYICYGLKLG--NIRILNIITALRSLLRGHTQRVT--DMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 209 i~~l~~h~-~~V~~va~Spdg~~LasGs~DG--~IrIWd~~~~~~~~l~~H~~~V~--slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
+..+..+. ...-++.|..+|.++-+.+.-| .|+.+|+.++.......-....+ .|+. -++.+..-.-.+|...
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecCCeEE
Confidence 34444332 3345677878888887777666 79999999985432221112222 3333 1334444455678899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||..+-+ .+..+... ..-..++ .++..++.+-..+.+..+|.......
T Consensus 114 ~yd~~tl~-----------~~~~~~y~----~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-------------- 162 (264)
T PF05096_consen 114 VYDPNTLK-----------KIGTFPYP----GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-------------- 162 (264)
T ss_dssp EEETTTTE-----------EEEEEE-S----SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE--------------
T ss_pred EEccccce-----------EEEEEecC----CcceEEE--cCCCEEEEECCccceEEECCcccceE--------------
Confidence 99998755 22222222 2233455 56777888888888888886543211
Q ss_pred ccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------------C--CCCCeeEEE
Q 039790 364 ELINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------------Y--DGHPVNCVT 427 (1395)
Q Consensus 364 ~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------------h--~~~~V~sV~ 427 (1395)
..+.+.. .--..++.+.|- +| .+.|=.-....|...|..+|+.+..+.. + ...-.+.++
T Consensus 163 ---~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIA 237 (264)
T PF05096_consen 163 ---RTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIA 237 (264)
T ss_dssp ---EEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred ---EEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEe
Confidence 0011111 111245666665 34 5555555666778888888888776631 1 122678999
Q ss_pred EeecCCCCCcEEEEEe
Q 039790 428 FLIGPHPQHIVLITGG 443 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~G 443 (1395)
|. |....|+.+|
T Consensus 238 yd----~~~~~l~vTG 249 (264)
T PF05096_consen 238 YD----PETDRLFVTG 249 (264)
T ss_dssp EE----TTTTEEEEEE
T ss_pred Ee----CCCCEEEEEe
Confidence 98 7777777768
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.55 Score=51.31 Aligned_cols=103 Identities=10% Similarity=0.060 Sum_probs=55.2
Q ss_pred cEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcE--EEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 390 TRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIV--LITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~--L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
..++.|+.||.|.+|.... |.....+..-. ....+-+ |.++. +..++..||.||.|++.-.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~I-----p~~~~~~~~c~~~~dg~ir~~n~~p~--------- 134 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGI-----PNGRDSSLGCVGAQDGRIRACNIKPN--------- 134 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhccc--ccceecc-----ccccccceeEEeccCCceeeeccccC---------
Confidence 5789999999999998652 11111111111 1222233 34443 5555669999999999765
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE--eCCCeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN--AKKNAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg--s~Dg~I~iWdl~~ 519 (1395)
+.+...-.|..... .-+.....+.+|+.. +.|..++.|++..
T Consensus 135 ---k~~g~~g~h~~~~~--------e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 135 ---KVLGYVGQHNFESG--------EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ---ceeeeeccccCCCc--------ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 54444443431100 013333444555555 5666666666654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.56 E-value=10 Score=48.53 Aligned_cols=123 Identities=12% Similarity=0.181 Sum_probs=76.4
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..-+.-+.-+ +..+.-+...++.|||.+.+.....-. ...+ .|..+.|.. .|||+.+++.| ..+.|.+|--...
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~-~I~dLDWts--t~d~qsiLaVG-f~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDD-PIRDLDWTS--TPDGQSILAVG-FPHHVLLYTQLRY 106 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCC-ceeeceeee--cCCCCEEEEEE-cCcEEEEEEccch
Confidence 3344444433 333333344569999999887554333 2233 899999973 38999999999 8999999865321
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.-......|..++.+...... ..-+....|-.+|.++++. ++.++|++-
T Consensus 107 ---dy~~~~p~w~~i~~i~i~~~T------~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 107 ---DYTNKGPSWAPIRKIDISSHT------PHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ---hhhcCCcccceeEEEEeecCC------CCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111223567777777543211 0111247788999988766 467888863
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=90.54 E-value=54 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCC---EEEEEeCCCeEEEEEcCCCCC
Q 039790 499 AGL---FLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 499 dg~---~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
+|. .|+.++++|.++++|-.+|+.
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 664 889999999999999998863
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.2 Score=48.61 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=76.9
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCE-------EEEEEcCCeEEEEECCCC---ceEEeccCC----CCeEEEEEeeCCCC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNY-------ICYGLKLGNIRILNIITA---LRSLLRGHT----QRVTDMAFFAEDVH 271 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~-------LasGs~DG~IrIWd~~~~---~~~~l~~H~----~~V~slaf~s~dg~ 271 (1395)
++.+..++.|.+ |.-+.+.++++. -+.|-.|..|+-||.+-. .+....+|. ....|.+- ....
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCc
Confidence 456667776655 677777776542 345777889999998743 222333332 22334433 3445
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN 344 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~ 344 (1395)
+||.||.+|.||+||- .+.. .-..+.+-+..|..|..+.+|.+|+++| ...++.++..
T Consensus 443 ~IvvgS~~GdIRLYdr-i~~~-------------AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR-IGRR-------------AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eEEEeecCCcEEeehh-hhhh-------------hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 8999999999999997 3331 2233445567777888888998777665 4556666553
|
|
| >PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene | Back alignment and domain information |
|---|
Probab=89.27 E-value=35 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039790 973 MQDMLNQMMSTQKEIQKQMNS 993 (1395)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~ 993 (1395)
|.+.++.|...-.+++++|..
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~ 23 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEE 23 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
|
This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.94 Score=37.32 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
....|.+++|+|.. .+||.|+.||.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcCc
Confidence 34569999999998 79999999999999998 55543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.79 E-value=8.6 Score=49.29 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc-----EEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-----FFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-----V~IWdl~tg~ 291 (1395)
.++...++||.| .++..||..++.-..+..-...-.......-+|.+.|.||.||. |-.||..+.+
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 356778888888 35667777776422222111111111222347889999999975 7778887765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.2 Score=36.66 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII 246 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~ 246 (1395)
..|.++.|+|...+||.|..+|.|.||+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 568999999999999999999999999984
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=92 Score=40.10 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 039790 1143 RSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRD 1197 (1395)
Q Consensus 1143 ~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~q~~~~~~~~~l~~~L~~ 1197 (1395)
+..+...+--.|.+..+++.+||+..+..||...+.+-+...+..+..|...|.+
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~~~ff~~f~~~~~~~~~~l~~s~~~ 697 (741)
T PRK09866 643 QRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLAL 697 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444677788888899999999999988887766666555555444433
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.19 E-value=6.1 Score=47.88 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC-CCccCccccccceEEEcccCCCeEEEEEecCC--CcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE-PLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~L 392 (1395)
.|..|..++.|..++..|.+|-++..-..+.|+...|...+ .+.|+.......+.+.. ..-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceE
Confidence 46678889999988888888877776655555543333322 24565544443333322 23357788999986 4678
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecC
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
+.-+.|.+|||||+.....+....|
T Consensus 184 ~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEEecCcEEEEEecCCcchhhccCC
Confidence 8888999999999988766644443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.95 E-value=4.4 Score=53.28 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=46.1
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
-...++|++|+|.| ..++.|-..|++.-|-. .+.....+.+ .....|.+|+|. ....+|++-+
T Consensus 197 ~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl----~t~eflvvy~ 262 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL----STQEFLVVYG 262 (1405)
T ss_pred cccceeeEEecccc-ceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe----cceeEEEEec
Confidence 45678999999999 89999999999998863 3333333322 222389999998 6777777755
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.92 E-value=25 Score=42.58 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGL-----------KLG-NIRILNIIT--AL---RSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs-----------~DG-~IrIWd~~~--~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
.....++|.++|+++++-. ..+ .|.+++-.+ |+ ...|...-.....|+| ..++ ++++ +.+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~-~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAV-AVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeE-ecCC-EEEe-CCC
Confidence 3456788999999777643 223 777776543 32 3445444456788999 6777 5554 444
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
...++.|..... .. .+.....+..+.. +......++|.|++..+++.+.
T Consensus 91 ~i~~~~d~~gdg-~a-----d~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 91 DILFLRDKDGDD-KA-----DGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eEEEEeCCCCCC-CC-----CCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 333343443211 00 0011111121222 1344567999999875555553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=86.56 E-value=9.4 Score=47.30 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=71.4
Q ss_pred CccEEEEeCC----CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCc
Q 039790 316 VHPRVCWHPH----KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTT 390 (1395)
Q Consensus 316 ~v~~v~~sp~----~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~ 390 (1395)
.|..++|.|- ...++++-..+.+.+|-.-...... ..+.+ .....+. ...---..+.|+|.. .
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~-----~K~l~------sQtcEi~e~~pvLpQGCVWHPk~-~ 125 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER-----NKLLM------SQTCEIREPFPVLPQGCVWHPKK-A 125 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc-----cccee------eeeeeccCCcccCCCcccccCCC-c
Confidence 4667999885 4578999999998888764221110 00000 0001110 000112357899987 5
Q ss_pred EEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 391 RLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.|+.-.....-.+++++.. +....++++ | .|.|.+|. .||+.|+++-+..=.-+|||-.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-G-~IhCACWT----~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIKTS-G-LIHCACWT----KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEeccCC-c-eEEEEEec----CcCCEEEEEeCCeEEEEEecCc
Confidence 6666665555566777654 333345544 4 79999999 8999887754233445788854
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=1.3e+02 Score=39.84 Aligned_cols=69 Identities=9% Similarity=-0.061 Sum_probs=43.3
Q ss_pred EEEEEecCCCEEEEEEcC------CeEEEEECCCC--c-eEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEEC
Q 039790 220 LGRQIAVNRNYICYGLKL------GNIRILNIITA--L-RSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNI 287 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~D------G~IrIWd~~~~--~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl 287 (1395)
..+.|++|++.|++...+ ..|+.|++.++ . ...+........-..+.+.++.+++..+. ++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458899999988887553 36778888887 2 33444434444423343557776665443 346888885
Q ss_pred C
Q 039790 288 T 288 (1395)
Q Consensus 288 ~ 288 (1395)
.
T Consensus 255 ~ 255 (686)
T PRK10115 255 E 255 (686)
T ss_pred c
Confidence 4
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=85.70 E-value=77 Score=36.80 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=119.6
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCC------C--ceEEecc-----CCCCeEEEEEeeCC-----------CCEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIIT------A--LRSLLRG-----HTQRVTDMAFFAED-----------VHLL 273 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~------~--~~~~l~~-----H~~~V~slaf~s~d-----------g~~L 273 (1395)
.-++++|+|.+.+-++....+...+||... . .+..+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 346899999998888877789999999871 1 1223321 23457777773211 1247
Q ss_pred EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-CC-CCCccEEEEeCC--CCeEEEEEeC-CeEEEEEcCCCCc
Q 039790 274 ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DG-DSVHPRVCWHPH--KQEILMLAIG-NRILKIDSNRVGK 348 (1395)
Q Consensus 274 aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~-~~~v~~v~~sp~--~~~lla~g~~-~~ii~~d~~~~~~ 348 (1395)
+.+++||+|.-|...-+... .+..+..+. .. ......+++... +.+|+++-.. ++|-++|.....-
T Consensus 104 if~tEdGTisaW~p~v~~t~---------~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTR---------MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred EEEeCCceEEeecCcCCccc---------ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 88899999999996544310 001111222 11 222234555433 4456655543 3444443322110
Q ss_pred c--ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCee
Q 039790 349 G--ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVN 424 (1395)
Q Consensus 349 ~--~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~ 424 (1395)
. ..|.-. .+...-.--.++.+.+. -.|+-..-.++. +.=+.|..-|.|-+||. .|..++.+. +.-. ..+
T Consensus 175 ~~~g~F~DP---~iPagyAPFnIqnig~~-lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LN-aPW 247 (336)
T TIGR03118 175 PLPGSFIDP---ALPAGYAPFNVQNLGGT-LYVTYAQQDADR-NDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLN-APW 247 (336)
T ss_pred cCCCCccCC---CCCCCCCCcceEEECCe-EEEEEEecCCcc-cccccCCCcceEEEEcC-CCcEEEEeccCCccc-CCc
Confidence 0 001000 00000000012222211 112222222222 23344455678999995 588888774 2222 567
Q ss_pred EEEEeecCC--CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 425 CVTFLIGPH--PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 425 sV~fs~~~~--pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.|+..|... ..|.+|+ +-..||+|..||..++ +.+..+....+
T Consensus 248 G~a~APa~FG~~sg~lLV-GNFGDG~InaFD~~sG------------~~~g~L~~~~G 292 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLV-GNFGDGTINAYDPQSG------------AQLGQLLDPDN 292 (336)
T ss_pred eeeeChhhhCCCCCCeEE-eecCCceeEEecCCCC------------ceeeeecCCCC
Confidence 777753211 3455554 4668999999999988 66666655443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.66 E-value=30 Score=41.85 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=80.0
Q ss_pred CCeEEEEEeeCCCCEEEEEE-----------CCC-cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC
Q 039790 258 QRVTDMAFFAEDVHLLASAS-----------VDG-RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH 325 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs-----------~Dg-tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~ 325 (1395)
.....|+| .++|+++++.. ..+ .|.+++-.++. +. .....++...-.....+++.++
T Consensus 14 ~~P~~ia~-d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd---------G~-~d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 14 RNPIAVCF-DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD---------GK-YDKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CCCceeeE-CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC---------CC-cceeEEeecCCCCccceeEecC
Confidence 34667888 78888777653 223 67777654432 10 1122233333344567888887
Q ss_pred CCeEEEEEeCCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcc----cCCCeEEEEEecCCCcEEEEEeC---
Q 039790 326 KQEILMLAIGNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGK----HDGEITELSMCQWLTTRLASASL--- 397 (1395)
Q Consensus 326 ~~~lla~g~~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~----h~~~V~slafspdg~~~LaSgs~--- 397 (1395)
+ ++++ ....+.++..... +.. +.... .+ +..+.. +......++|.||| .+.++-+.
T Consensus 83 G--lyV~-~~~~i~~~~d~~gdg~a-----d~~~~----~l---~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~ 146 (367)
T TIGR02604 83 G--VYVA-TPPDILFLRDKDGDDKA-----DGERE----VL---LSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLA 146 (367)
T ss_pred C--EEEe-CCCeEEEEeCCCCCCCC-----CCccE----EE---EEccCCCCCcccccccCceECCCC-CEEEecccCCC
Confidence 7 5554 4556766644321 110 00000 00 111111 23457889999998 54444331
Q ss_pred ----------------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 398 ----------------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 398 ----------------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.|.|.-+|...+.....-.++. ....++|+ ++|+++++-.
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r--np~Gl~~d----~~G~l~~tdn 202 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ--NPYGHSVD----SWGDVFFCDN 202 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC--CCccceEC----CCCCEEEEcc
Confidence 1445555555444322233443 46889998 8998877633
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=85.63 E-value=81 Score=37.00 Aligned_cols=113 Identities=11% Similarity=0.088 Sum_probs=57.9
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
...-.+.+..+..++|| .++++++......-||--. ..+.... -. ..|.++.|. +++...++ . ..|.|
T Consensus 140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~-~riq~~gf~----~~~~lw~~-~-~Gg~~ 209 (302)
T PF14870_consen 140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRN--SS-RRIQSMGFS----PDGNLWML-A-RGGQI 209 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE----SS-S-EEEEEE-----TTS-EEEE-E-TTTEE
T ss_pred ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccC--cc-ceehhceec----CCCCEEEE-e-CCcEE
Confidence 34455788999999998 7888887777777888543 2322222 22 389999999 88877665 4 78889
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++=+... -..++..+...+. ...+-.-.+++.+++.+.++|+..+
T Consensus 210 ~~s~~~~--------------~~~~w~~~~~~~~--~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 210 QFSDDPD--------------DGETWSEPIIPIK--TNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEE-TT--------------EEEEE---B-TTS--S--S-EEEEEESSSS-EEEEESTT-
T ss_pred EEccCCC--------------CccccccccCCcc--cCceeeEEEEecCCCCEEEEeCCcc
Confidence 8877221 1222332222211 1122223578888888888777553
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=91 Score=37.21 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEE-EEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVK-IWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~Ir-IWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.+.++++.+.+++ .+++++ ..|.+. .+|- .++.-..+.......++++.+. ++++.+++ | ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~----~~g~~~~v-g-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQ----PDGNLWML-A-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEc----CCCCEEEE-e-cCCEEEEccC
Confidence 4578899999986 566555 455443 2332 2222222333333479999998 88887666 5 5777653234
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
..+ .+|+.+.. +.. ...+....+.+.+++.+++++ .+|.|+
T Consensus 243 d~G---------~sW~~~~~---~~~-----~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 243 DDL---------ESWSKPII---PEI-----TNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CCC---------CccccccC---Ccc-----ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 444 34443211 100 001111246777777766554 466554
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.5e+02 Score=39.64 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred cCCCCeEEEEEe---e---CCCCEEEEEECCCcEEEEECCCCCC----CCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 255 GHTQRVTDMAFF---A---EDVHLLASASVDGRFFIWNITEGPD----EEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 255 ~H~~~V~slaf~---s---~dg~~LaSgs~DgtV~IWdl~tg~~----~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
.-..+|..|+|. . ....+|+. -....+.|+...-.+. ......+....+..+.....++..+..|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999993 1 12235444 4445777877333221 01112233445555655556677788999999
Q ss_pred CCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 325 HKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 325 ~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
....-|++ -..|.--+|+.....+.. ...+ .......+...+. ...+.-..+.|..+. +.|+.++ ...+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~----~~~~--~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~ 227 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK----SSNL--RLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLM 227 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC----Ccce--eeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceE
Confidence 77655544 445555555551111100 0000 0000000100000 011334578888776 5666654 35688
Q ss_pred EEeCCCCceeE-EecCCCCCCeeEEEEeecCCCC--CcEEEEEecCCCeEEEEECCCC
Q 039790 403 IWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQ--HIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 403 IWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pd--g~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++|+.+..... ........+|..+.-+ ++ +..++- ....|...|+...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~----~~~~~~~FiL---Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRS----PDNPSHVFIL---TSKEIIWLDVKSS 278 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEec----CCccceEEEE---ecCeEEEEEccCC
Confidence 99998875533 2222222378888887 44 222322 2367888888763
|
These proteins are found in fungi. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.67 E-value=45 Score=41.88 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=77.3
Q ss_pred CEEEEE---EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 229 NYICYG---LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 229 ~~LasG---s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
-+++.+ ...+.+.++|.+...+..+.........+.+ -++|++++..+ +.++.+|+. |+ .+.
T Consensus 116 l~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~-l~nG~ll~~~~--~~~~e~D~~-G~-----------v~~ 180 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQ-LPNGNLLIGSG--NRLYEIDLL-GK-----------VIW 180 (477)
T ss_dssp EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE--TTS-EEEEEB--TEEEEE-TT--------------EEE
T ss_pred EEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeE-cCCCCEEEecC--CceEEEcCC-CC-----------EEE
Confidence 345554 2445666666665544433322222211555 67888776555 678888876 43 222
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCCCCccccccCCCCCccCcc-----cccc
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNRVGKGERFSAEEPLKCPVD-----ELIN 367 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~-----~~~~ 367 (1395)
...+-......+..+.+-++|..++.+.. .+.|+.++ ....-...|.....+..... ....
T Consensus 181 ~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~ 259 (477)
T PF05935_consen 181 EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYG 259 (477)
T ss_dssp EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SS
T ss_pred eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccc
Confidence 22222211123446778888877766662 45566665 22111111111111100000 0000
Q ss_pred ceEEEcccC--CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC
Q 039790 368 GVQLVGKHD--GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG 420 (1395)
Q Consensus 368 ~~~~l~~h~--~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~ 420 (1395)
......... -.++++.+.+.+..+|+|+-.-..|...|.++++....+-.|.+
T Consensus 260 ~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 260 DISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp SSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 000001111 24789999995447777777677899999999998888877654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.26 E-value=67 Score=38.87 Aligned_cols=111 Identities=11% Similarity=0.202 Sum_probs=73.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---c--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---L--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
++.......+.|.++.||+|.+.||+--.+.+|.+++.... . .+..+..+..|...+| ..+ .-++-....| +
T Consensus 58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-I 134 (657)
T ss_pred CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-e
Confidence 33444456689999999999999999999999999998443 1 1222333456888999 443 4455544443 6
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
-+|.+...+ ..++....+...|.-..|+++...++.+..
T Consensus 135 e~y~v~pek-------------rslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 135 EFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEEchhh-------------hhhhhhhhcccCccEEEEccccceEeeecc
Confidence 667665433 245556666777778888888775544433
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=82.19 E-value=1.1e+02 Score=35.90 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
....-.+.+.++.. .++|.+++.+..-..+.-||--... + ..........+..+.|.+++. +..
T Consensus 139 ~~~~~~gs~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~-----------w---~~~~r~~~~riq~~gf~~~~~-lw~ 202 (302)
T PF14870_consen 139 VVSETSGSINDITR-SSDGRYVAVSSRGNFYSSWDPGQTT-----------W---QPHNRNSSRRIQSMGFSPDGN-LWM 202 (302)
T ss_dssp EE-S----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS---------------EEEE--SSS-EEEEEE-TTS--EEE
T ss_pred cccCCcceeEeEEE-CCCCcEEEEECcccEEEEecCCCcc-----------c---eEEccCccceehhceecCCCC-EEE
Confidence 34455678889888 8999988777654444567755322 1 111122346677899999865 555
Q ss_pred EEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 332 LAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 332 ~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
++.++.+..-+.... ...|.. ...-+......+.+++|.+++ ...|+|+ .|++ +.....|+-
T Consensus 203 ~~~Gg~~~~s~~~~~--~~~w~~-------------~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 203 LARGGQIQFSDDPDD--GETWSE-------------PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKT 264 (302)
T ss_dssp EETTTEEEEEE-TTE--EEEE----------------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS
T ss_pred EeCCcEEEEccCCCC--cccccc-------------ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCcc
Confidence 667777766652111 111110 011111123348999999886 5666554 4443 334445554
Q ss_pred eEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 412 LAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 412 l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
-...+. -.. -++.|.|. .+.+-++. | .||.|--|
T Consensus 265 W~~~~~~~~~~~-n~~~i~f~----~~~~gf~l-G-~~G~ll~~ 301 (302)
T PF14870_consen 265 WQKDRVGENVPS-NLYRIVFV----NPDKGFVL-G-QDGVLLRY 301 (302)
T ss_dssp -EE-GGGTTSSS----EEEEE----ETTEEEEE---STTEEEEE
T ss_pred ceECccccCCCC-ceEEEEEc----CCCceEEE-C-CCcEEEEe
Confidence 444432 122 58999997 44445554 6 89988655
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.36 E-value=49 Score=41.61 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=14.3
Q ss_pred cCCCEEEEEEcCC-----eEEEEECCCCc
Q 039790 226 VNRNYICYGLKLG-----NIRILNIITAL 249 (1395)
Q Consensus 226 pdg~~LasGs~DG-----~IrIWd~~~~~ 249 (1395)
.++.+++.|+.++ .+..||..++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~ 298 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNN 298 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCE
Confidence 4456667776543 45667776653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=81.22 E-value=1e+02 Score=36.65 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=14.6
Q ss_pred CCCEEEEEEcC-------CeEEEEECCCCc
Q 039790 227 NRNYICYGLKL-------GNIRILNIITAL 249 (1395)
Q Consensus 227 dg~~LasGs~D-------G~IrIWd~~~~~ 249 (1395)
++++++.|+.+ ..+.+||..+..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 61 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT 61 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE
Confidence 45666666653 257788887754
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=80.98 E-value=8.4 Score=42.98 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceE--------Eec-------cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITALRS--------LLR-------GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~~~--------~l~-------~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..+++||++-+.+|.+++||+.+++.. .+. .....|..+.+ ..+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l-t~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL-TSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE-cCCCCEEEEEe-CCCEEEeccc
Confidence 5668899999999999999999986321 122 35567888888 78888777765 5789999987
Q ss_pred CCC
Q 039790 289 EGP 291 (1395)
Q Consensus 289 tg~ 291 (1395)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=80.45 E-value=5.3 Score=32.19 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCC
Q 039790 377 GEITELSMCQWLT--TRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 377 ~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg 409 (1395)
+.|.++.|+|... .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998664 58888888899999999963
|
It contains a characteristic DLL sequence motif. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1395 | ||||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-05 |
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1395 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2vxg_A | 139 | LD41624, GE-1, CG6181-PA, isoform A; decapping, ED | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.83 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.77 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.77 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.76 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.73 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.71 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.7 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.69 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.67 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.64 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.62 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.59 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.56 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.56 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.56 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.52 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.52 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.48 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.47 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.44 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.37 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.36 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.36 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.36 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.35 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.29 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.29 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.27 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.27 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.26 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.22 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.22 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.2 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.19 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.18 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.15 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.13 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.11 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.11 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.1 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.1 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.09 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.09 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.08 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.03 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.03 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.96 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.93 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.92 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.91 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.86 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.83 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.73 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.7 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.65 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.65 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.63 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.62 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.54 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.54 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.53 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.52 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.51 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.5 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.49 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.47 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.43 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.42 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.39 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.37 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.35 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.34 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.25 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.21 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.21 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.17 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.13 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.13 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.08 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.03 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.95 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.94 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.91 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.89 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.79 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.78 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.77 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.7 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.67 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.67 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.65 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.65 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.59 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.57 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.57 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.55 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.54 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.5 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.49 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.47 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.46 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.44 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.44 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.43 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.41 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.4 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.36 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.26 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.22 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.2 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.18 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.09 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.08 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.02 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.99 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.95 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.86 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.84 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.73 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.65 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.6 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.51 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.5 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.42 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.34 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.34 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.27 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.21 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.78 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.5 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.47 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.36 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.23 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.13 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.42 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.25 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.02 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.89 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.82 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 93.76 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.34 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.28 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.88 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.52 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.44 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 92.35 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.26 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.26 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.23 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.2 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.83 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.68 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 90.63 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 89.98 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 89.98 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 89.83 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 88.83 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.82 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 86.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 85.68 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 85.45 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 85.27 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 85.06 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 85.05 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 84.97 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 84.44 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.12 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 81.98 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 81.0 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=375.51 Aligned_cols=429 Identities=14% Similarity=0.112 Sum_probs=303.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccCcc--------------cccceeeee
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQPQL--------------EVTPITKYI 213 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~~~--------------~~~~i~~l~ 213 (1395)
+.++|++..|++++.|++|++||+....+... .....|+.+.+.++|..+... .+..+..+.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 67788899999999999999999643333322 235678888888887654311 123455678
Q ss_pred CCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+|...|++++|+|++. +|++|+.|++|++||..++ +...+.+|.+.|++++| ++++.+|++|+.||+|+|||+.+++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f-spdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE-CCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999999999987 6999999999999998876 46789999999999999 8999999999999999999999887
Q ss_pred CCCCCcccccceEEEEEEec-------CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC---------
Q 039790 292 DEEDKPQILGKIVVAIQILA-------DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE--------- 355 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~--------- 355 (1395)
.+..+. .|...|.+++|+|++..+++++.++.+.+|+.........+...
T Consensus 224 --------------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 224 --------------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp --------------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred --------------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 233332 57889999999999988888887888888776532111101000
Q ss_pred ------------CCCccCcccccc--ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCC
Q 039790 356 ------------EPLKCPVDELIN--GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDG 420 (1395)
Q Consensus 356 ------------~~~~~~~~~~~~--~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~ 420 (1395)
..-.+.+|+... ....+.+|...|++++|+|+| .+|++++.||+|++||+.++.+...+ .+|..
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 000112233222 245677999999999999998 89999999999999999999888776 57876
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC-------CCc-------c-------cccEEEEEeccC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP-------SDI-------E-------SWKCTQTLELKS 479 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~-------~~~-------~-------~~~~l~tl~~h~ 479 (1395)
.|.+++|+ +++ .|++++ .|++|++|++..+.-.... ... . ....+..+....
T Consensus 369 -~v~~~~~s----~~~-~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 369 -MITGIKTT----SKG-DLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp -CEEEEEEC----TTS-CEEEEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred -eEEEEEEC----CCC-cEEEEE-cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 99999998 666 566766 9999999998764210000 000 0 000111111000
Q ss_pred cccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc--C--cCCC
Q 039790 480 SAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA--S--PDGE 555 (1395)
Q Consensus 480 ~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~--~--~s~d 555 (1395)
.......+...+++|+|||.+|++|+.|+.|++|++..+. +..+........+.++.+.. +. + .+.|
T Consensus 442 --~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~------~~~~~~~~h~~~v~~v~fsp-dg~~las~s~d 512 (611)
T 1nr0_A 442 --LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS------VSEVKTIVHPAEITSVAFSN-NGAFLVATDQS 512 (611)
T ss_dssp --EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE------EEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred --eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc------eeeeeccCCCCceEEEEECC-CCCEEEEEcCC
Confidence 0000112234579999999999999999999999997632 11122222223444444443 22 2 3678
Q ss_pred CeEEEEEcCC-Cceee-----ecccceEEecCCCCC--eecccCCCceEEEeecCCCCc-c-eeeccC
Q 039790 556 HIVQIYCVQT-QAIQQ-----YALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDG-S-ASLESS 613 (1395)
Q Consensus 556 g~V~lWdv~t-~~i~~-----~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~-~-~~l~g~ 613 (1395)
+.|++|++.+ +++.. .|.....|+.|++|+ ++.++ .++.+++||+.++.. + ..+.++
T Consensus 513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs-~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCTTSCCEEETTSS
T ss_pred CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE-CCCcEEEEECCCcccccchhhccC
Confidence 9999999998 55432 266678899999986 55555 557778999998874 3 455543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=368.14 Aligned_cols=288 Identities=17% Similarity=0.197 Sum_probs=223.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
++++|++..|++++ ++.|++|++. ....+..|.+|.+.|++++|+|||++|
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~----------------------------~~~~~~~~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVG----------------------------SLTDTEIYTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETT----------------------------CSSCCEEECCCSSCEEEEEECTTSSEE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCC----------------------------CcccCeEecCCCCceEEEEECCCCcEE
Confidence 55677778888877 5688898843 113456788999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
|+|+.||+|+|||+.++ ....+.+|.+.|.+++| ++++.+|++++.+ ++|++||. +..
T Consensus 75 asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f-s~dg~~l~~~~~~~~~~~~v~~wd~--~~~------------ 139 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW-DSESKRIAAVGEGRERFGHVFLFDT--GTS------------ 139 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE-CTTSCEEEEEECCSSCSEEEEETTT--CCB------------
T ss_pred EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEE-CCCCCEEEEEECCCCceeEEEEeeC--CCC------------
Confidence 99999999999999754 35578899999999999 8999999999876 47888874 331
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
+..+..|...|.+++|+|++..+++++. ++.+.+|+. ..++ ....+.+|.+.|++++
T Consensus 140 --~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~-------------------~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 140 --NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFK-------------------FKSTFGEHTKFVHSVR 197 (611)
T ss_dssp --CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBE-------------------EEEEECCCSSCEEEEE
T ss_pred --cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCe-------------------EeeeeccccCceEEEE
Confidence 1234578889999999999986555555 555555543 2211 1567889999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|+|+| .+|++|+.|++|+|||+.+++++..+. +|.+ .|++|+|+ |+|++|++++ .|++|+|||+.+
T Consensus 198 fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~-~V~~v~~s----pdg~~l~s~s-~D~~v~lWd~~~ 270 (611)
T 1nr0_A 198 YNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWS----PDGTKIASAS-ADKTIKIWNVAT 270 (611)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETTT
T ss_pred ECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC-CEEEEEEC----CCCCEEEEEe-CCCeEEEEeCCC
Confidence 99998 899999999999999999999999884 7987 99999999 9999999977 999999999988
Q ss_pred CCCCC-CCC------------------------------CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 457 EEGWL-LPS------------------------------DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 457 g~~~~-~~~------------------------------~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
++... +.. +.....+...+.+|... +..++|+++|.+|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~---------v~~l~~spdg~~l~s 341 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA---------ITALSSSADGKTLFS 341 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC---------EEEEEECTTSSEEEE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC---------EEEEEEeCCCCEEEE
Confidence 71000 000 00011122333334333 235899999999999
Q ss_pred EeCCCeEEEEEcCCCC
Q 039790 506 NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 506 gs~Dg~I~iWdl~~g~ 521 (1395)
++.|+.|++||+.++.
T Consensus 342 ~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 342 ADAEGHINSWDISTGI 357 (611)
T ss_dssp EETTSCEEEEETTTCC
T ss_pred EeCCCcEEEEECCCCc
Confidence 9999999999998753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=350.40 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=242.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|.+..|++++.|++|++||.. .+..+..+.+|.+.|.+++|+++|++|
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~----------------------------~~~~~~~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYE----------------------------TGDFERTLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETT----------------------------TCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----------------------------CCcEEEEEeccCCcEEEEEEcCCCCEE
Confidence 5566677899999999999999943 123456788999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||+|+|||+.++ ++..+.+|...|.+++| ++++++|++|+.||+|++||+.++. ++..+
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~--------------~~~~~ 230 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRDKTIKMWEVQTGY--------------CVKTF 230 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCC--------------EEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEE
Confidence 99999999999999887 57789999999999999 8999999999999999999999887 55666
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC--
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL-- 388 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg-- 388 (1395)
..|...+.++.|++++..+++++.++.+.+|+..... ....+.+|...|.+++|+|++
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~--------------------~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------------------CKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------------EEEEECCCSSCEEEEEECCSCGG
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------------eeeEecCCCceEEEEEEcCcccc
Confidence 7888899999999999888887778888887764321 145677899999999999963
Q ss_pred -----------------CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 389 -----------------TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 389 -----------------~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
+.+|++|+.||+|+|||++++.++.++.+|.+ .|++|+|+ |+|++|++++ .|++|+|
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~----~~g~~l~s~s-~D~~i~v 364 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFH----SGGKFILSCA-DDKTLRV 364 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSCEEEEE-TTTEEEE
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEc----CCCCEEEEEe-CCCeEEE
Confidence 26899999999999999999999999999997 99999999 9999999977 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
||+.++ +++.++.+|...+. .++|++++.+|++|+.|++|++|++
T Consensus 365 wd~~~~------------~~~~~~~~h~~~v~---------~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 365 WDYKNK------------RCMKTLNAHEHFVT---------SLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCTTS------------CCCEEEECCSSCEE---------EEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EECCCC------------ceEEEEcCCCCcEE---------EEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999888 88999998887654 4999999999999999999999986
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=346.30 Aligned_cols=285 Identities=20% Similarity=0.224 Sum_probs=236.9
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.++ ....+.+|.+.|++++| ++++.+|++|+.||+|+|||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~-~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEeC
Confidence 5678899999999999999999999999999999999987 47789999999999999 899999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.++. ++..+..|...|.+++|+|++..+++++.++.+.+|+.... .
T Consensus 180 ~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~------------------- 225 (410)
T 1vyh_C 180 QGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-Y------------------- 225 (410)
T ss_dssp TSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-C-------------------
T ss_pred CCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c-------------------
Confidence 8876 55667788899999999999988888888888887776432 1
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC------------
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ------------ 435 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd------------ 435 (1395)
.+..+.+|...|.++.|++++ .+|++|+.||+|++||++++.+...+.+|.. .|.+++|+ |+
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWA----PESSYSSISEATGS 299 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----CSCGGGGGGGCCSC
T ss_pred EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCc-eEEEEEEc----Ccccccchhhhccc
Confidence 156778899999999999998 8999999999999999999999999999997 99999998 64
Q ss_pred --------CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 436 --------HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 436 --------g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|.+|++++ .|++|+|||++++ .++.++.+|...+. .++|+++|.+|++|+
T Consensus 300 ~~~~~~~~g~~l~sgs-~D~~i~iwd~~~~------------~~~~~~~~h~~~v~---------~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGS-RDKTIKMWDVSTG------------MCLMTLVGHDNWVR---------GVLFHSGGKFILSCA 357 (410)
T ss_dssp C-------CCEEEEEE-TTSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSCEEEEE
T ss_pred cccccCCCCCEEEEEe-CCCeEEEEECCCC------------ceEEEEECCCCcEE---------EEEEcCCCCEEEEEe
Confidence 66788866 9999999999988 99999999887654 489999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEc
Q 039790 508 KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv 563 (1395)
.|+.|++||+..+. ++..+..+. ..+.++..... ..+ ++.|+.|+||++
T Consensus 358 ~D~~i~vwd~~~~~-----~~~~~~~h~--~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKR-----CMKTLNAHE--HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSC-----CCEEEECCS--SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCc-----eEEEEcCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999997653 222222222 23333333320 112 346777777764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=348.30 Aligned_cols=334 Identities=18% Similarity=0.215 Sum_probs=269.2
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
....+..+.+|...|.+++|++++++|++|+.||.|++||.....+..+.+|...|.+++| .+++.+|++++.|++|++
T Consensus 210 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~-~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKL 288 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEE
T ss_pred CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEE-cCCCCEEEEEeCCCEEEE
Confidence 3455677889999999999999999999999999999999887788899999999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||.. ++ .+..+..|...+.+++|+|++..+++++.++.+.+|+... .
T Consensus 289 w~~~-~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~----------------- 335 (577)
T 2ymu_A 289 WNRN-GQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q----------------- 335 (577)
T ss_dssp EETT-SC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C-----------------
T ss_pred EeCC-Cc--------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-C-----------------
Confidence 9965 33 3455677888999999999998888777777777776422 1
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+..+.+|...|++++|+|++ .+|++|+.||.|++|| .+++++..+.+|.. .|.+++|+ |||++|++++
T Consensus 336 ---~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~-~v~~~~~s----~dg~~l~~~~- 404 (577)
T 2ymu_A 336 ---HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVRGVAFS----PDGQTIASAS- 404 (577)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE-TTCCEEEEEECCSS-CEEEEEEC----TTSSCEEEEE-
T ss_pred ---eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEc-CCCCEEEEecCCCC-CeEEEEEC----CCCCEEEEEe-
Confidence 145677899999999999998 8999999999999999 56888999999987 99999999 9999999977
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|+|||. ++ +++.++..|...+. .++|++|+.+|++++.|+.|++|++.. +
T Consensus 405 ~d~~v~~~~~-~~------------~~~~~~~~~~~~v~---------~~~~s~d~~~l~~~~~d~~v~~w~~~~-~--- 458 (577)
T 2ymu_A 405 DDKTVKLWNR-NG------------QLLQTLTGHSSSVW---------GVAFSPDDQTIASASDDKTVKLWNRNG-Q--- 458 (577)
T ss_dssp TTSEEEEECT-TC------------CEEEEEECCSSCEE---------EEEECTTSSEEEEEETTSEEEEEETTS-C---
T ss_pred CCCEEEEEeC-CC------------CEEEEecCCCCCeE---------EEEECCCCCEEEEEcCCCEEEEEECCC-C---
Confidence 9999999995 34 77888988887654 489999999999999999999999643 1
Q ss_pred CcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEcCCCceee--ecccceEEecCCCCC--eecccCCCceEE
Q 039790 525 STRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLEN--AELEKTDSNATR 597 (1395)
Q Consensus 525 ~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~--l~~~~sd~~v~~ 597 (1395)
.+..+..+. ..+..+..... ..+ .+.|+.|+||+.....+.. .|.....|+.|++++ ++.++ +++.++
T Consensus 459 --~~~~~~~~~--~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~ 533 (577)
T 2ymu_A 459 --LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVK 533 (577)
T ss_dssp --EEEEEECCS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEE
T ss_pred --EEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE-CcCEEE
Confidence 222232222 33444443330 222 3578999999976554443 355567788888876 55555 568888
Q ss_pred EeecCCCCcceeeccCCC
Q 039790 598 AFDVANPDGSASLESSHG 615 (1395)
Q Consensus 598 iWD~~tg~~~~~l~g~~~ 615 (1395)
+||. +++++.++.|+.+
T Consensus 534 lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EECT-TSCEEEEEECCSS
T ss_pred EEeC-CCCEEEEEcCCCC
Confidence 9995 7899999996544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=350.84 Aligned_cols=369 Identities=19% Similarity=0.228 Sum_probs=290.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccC-----------cccccceeeeeCCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQP-----------QLEVTPITKYISDP 216 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~-----------~~~~~~i~~l~~h~ 216 (1395)
....+.+..|++++.|+.|++|+. +++.+ .....+..+.+.++|..+. ......+..+.+|.
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 262 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 262 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCS
T ss_pred eeecCCCCEEEEEcCCCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCC
Confidence 445667789999999999999983 34444 2244566666666554432 23456677889999
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
..|.+++|++++++|++++.|+.|++||........+.+|...|++++| ++++.+|++++.||+|++||+....
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~~~d~~i~~w~~~~~~----- 336 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQH----- 336 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSCE-----
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 9999999999999999999999999999888788899999999999999 8999999999999999999986532
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
+..+..+...+.+++|+|++..+++++.++.+.+|+.. +. .+..+.+|.
T Consensus 337 ----------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~-------------------~~~~~~~~~ 385 (577)
T 2ymu_A 337 ----------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ-------------------LLQTLTGHS 385 (577)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CC-------------------EEEEEECCS
T ss_pred ----------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CC-------------------EEEEecCCC
Confidence 44556778889999999999877777777777666631 11 156677899
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..|++++|+|++ .+|++++.|+.|++|| .+++.+..+.+|.. .|++++|+ ||+++|++++ .|++|++||..
T Consensus 386 ~~v~~~~~s~dg-~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~-~v~~~~~s----~d~~~l~~~~-~d~~v~~w~~~- 456 (577)
T 2ymu_A 386 SSVRGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVWGVAFS----PDDQTIASAS-DDKTVKLWNRN- 456 (577)
T ss_dssp SCEEEEEECTTS-SCEEEEETTSEEEEEC-TTCCEEEEEECCSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETT-
T ss_pred CCeEEEEECCCC-CEEEEEeCCCEEEEEe-CCCCEEEEecCCCC-CeEEEEEC----CCCCEEEEEc-CCCEEEEEECC-
Confidence 999999999998 8999999999999999 46888999999997 99999999 9999999977 99999999963
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeec
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTV 536 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~ 536 (1395)
+ +++..+..|...+. .++|+++|.+|++++.|+.|++|+.. ++ . +..+..
T Consensus 457 ~------------~~~~~~~~~~~~v~---------~~~~spd~~~las~~~d~~i~iw~~~-~~-----~---~~~~~~ 506 (577)
T 2ymu_A 457 G------------QLLQTLTGHSSSVR---------GVAFSPDGQTIASASDDKTVKLWNRN-GQ-----L---LQTLTG 506 (577)
T ss_dssp S------------CEEEEEECCSSCEE---------EEEECTTSCEEEEEETTSEEEEEETT-SC-----E---EEEEEC
T ss_pred C------------CEEEEEcCCCCCEE---------EEEEcCCCCEEEEEeCCCEEEEEcCC-CC-----E---EEEEeC
Confidence 4 78888988887654 49999999999999999999999953 22 2 333333
Q ss_pred c-ccEEEEecCCC-CcC--cCCCCeEEEEEcCCCceee--ecccceEEecCCCCC--eecccCCCceEEEee
Q 039790 537 T-MPILSLTGTTT-DAS--PDGEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLEN--AELEKTDSNATRAFD 600 (1395)
Q Consensus 537 ~-~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD 600 (1395)
+ ..+..+..... ..+ .+.|+.|+|||+....+.. .|.....|+.|++|+ ++.++ .++.+++||
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~-~D~~i~~Wd 577 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-SDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEeC
Confidence 3 23434433330 222 4678999999975544443 356667888888876 55555 457778997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=330.56 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=237.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..|++++.|++|++|+.... .......+.+|...|.+++|++++.++++|+.|
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~--------------------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE--------------------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC--------------------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 468999999999999993310 012234577999999999999999999999999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
|+|+|||+.++ .+..+..|...|.+++| ++++++|++|+.||.|++||+.+++ ....+..+...
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~g~~dg~v~i~~~~~~~--------------~~~~~~~~~~~ 166 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAF-SPDSQYLATGTHVGKVNIFGVESGK--------------KEYSLDTRGKF 166 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEE-CTTSSEEEEECTTSEEEEEETTTCS--------------EEEEEECSSSC
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEE-CCCCCEEEEEcCCCcEEEEEcCCCc--------------eeEEecCCCce
Confidence 99999999988 46778889999999999 9999999999999999999999876 33445566778
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
+.+++|+|++..+++++.++.+.+|+.... + .+..+.+|...|++++|+|++ .+|++|+
T Consensus 167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~-------------------~~~~~~~h~~~v~~l~~spd~-~~l~s~s 225 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAIDGIINIFDIATG-K-------------------LLHTLEGHAMPIRSLTFSPDS-QLLVTAS 225 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCSSCCCEEEECTTS-CEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC-c-------------------EEEEEcccCCceeEEEEcCCC-CEEEEEc
Confidence 899999999998888888888888876432 1 156778899999999999998 8999999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
.||+|+|||++++.++.++.+|.+ .|.+++|+ |++.+|++++ .|++|+|||+.++ +++.++.
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s----p~~~~l~s~s-~D~~v~iwd~~~~------------~~~~~~~ 287 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFC----PDDTHFVSSS-SDKSVKVWDVGTR------------TCVHTFF 287 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTT------------EEEEEEC
T ss_pred CCCeEEEEECCCcceeEEEcCCCC-ceEEEEEC----CCCCEEEEEe-CCCcEEEEeCCCC------------EEEEEEc
Confidence 999999999999999999999997 99999999 9999999977 9999999999988 9999999
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.|...+. .++|+++|.+|++++.|+.|++||+.
T Consensus 288 ~h~~~v~---------~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVW---------GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEE---------EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCcEE---------EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8887654 49999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=323.89 Aligned_cols=257 Identities=18% Similarity=0.162 Sum_probs=222.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...++|.+|.+.|++++|+|++++|++|+.||.|+|||+.++ .+..+.+|...|.+++| ++++++|++|+.||+|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEE-eCCCCEEEEECCCCEEEEE
Confidence 456789999999999999999999999999999999999987 47788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.+++|+|++..+++++.++.+.+|+......
T Consensus 83 d~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------- 131 (304)
T 2ynn_A 83 NYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (304)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred ECCCCc--------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence 999887 4556678899999999999999888888888888887643211
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
....+.+|...|++++|+|+++.+|++|+.||+|++||++.+.+...+..+....|..+.|++. +++.+|++++ .
T Consensus 132 --~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~s-~ 206 (304)
T 2ynn_A 132 --LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL--PDKPYMITAS-D 206 (304)
T ss_dssp --EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS--TTCCEEEEEE-T
T ss_pred --hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc--CCCCEEEEEc-C
Confidence 1456788999999999999655899999999999999999988777766443338999999822 4788999876 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++|+|||++++ +++.++.+|...+. .++|++++.+|++|+.||+|++||+.+++
T Consensus 207 D~~i~iWd~~~~------------~~~~~~~~h~~~v~---------~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 207 DLTIKIWDYQTK------------SCVATLEGHMSNVS---------FAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp TSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCeEEEEeCCCC------------ccceeeCCCCCCEE---------EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999988 99999999987654 48999999999999999999999998753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=330.00 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=216.9
Q ss_pred ceeeeeCCCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....+.+|.+.|++++|+++ +.+|++|+.||+|+|||+..+. ...+.+|...|.+++| ++++.++++|+.||
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~-~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI-SHTLPIAASSSLDA 102 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CSSSSEEEEEETTS
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEE-CCCCCEEEEEeCCC
Confidence 34566789999999999974 6799999999999999998763 4468999999999999 89999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++||+.+++ .+..+..+...+.+++|+|++..+++++.++.+.+|+......
T Consensus 103 ~i~lWd~~~~~--------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~------------ 156 (321)
T 3ow8_A 103 HIRLWDLENGK--------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------------ 156 (321)
T ss_dssp EEEEEETTTTE--------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE------------
T ss_pred cEEEEECCCCC--------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce------------
Confidence 99999999876 4455566777888999999998888777777777777643211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
...+..|...|.+++|+|++ ++|++|+.||.|++||+++++++.++.+|.. .|++++|+ |++++|+
T Consensus 157 --------~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s----pd~~~l~ 222 (321)
T 3ow8_A 157 --------EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLTFS----PDSQLLV 222 (321)
T ss_dssp --------EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCEEEEC----TTSCEEE
T ss_pred --------eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeEEEEc----CCCCEEE
Confidence 45566788999999999998 8999999999999999999999999999987 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .|++|+|||++++ .++.++.+|...+. .++|+++|.+|++++.|+.|++||+.++
T Consensus 223 s~s-~dg~i~iwd~~~~------------~~~~~~~~h~~~v~---------~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 223 TAS-DDGYIKIYDVQHA------------NLAGTLSGHASWVL---------NVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp EEC-TTSCEEEEETTTC------------CEEEEECCCSSCEE---------EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEc-CCCeEEEEECCCc------------ceeEEEcCCCCceE---------EEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 966 9999999999988 88899998887654 4999999999999999999999999874
|
| >2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=298.84 Aligned_cols=138 Identities=24% Similarity=0.352 Sum_probs=121.3
Q ss_pred CcHHHHHHHhhhccHHHHHHHHhccCChHHHHHHHhcCCCCCccccCCCCcchhHHHHHHHHhhcccccchhhHHHHHHH
Q 039790 1257 DPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTD 1336 (1395)
Q Consensus 1257 d~~~~i~~l~~~g~~eeAf~~aL~s~d~~l~~~l~~~~~p~~l~~~~p~~Lsq~vlLsLiqqLs~dL~~~~~~kl~wle~ 1336 (1395)
|+.++|.+||++|+|||||++||+++|+++|+|+|+++||.+||+..|++|||+|||||+||||+||++++++||+|||+
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL~~~~~~Kl~WLe~ 81 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTNHNELKQRYLNE 81 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHcCCCCchhhhhHHHHHHHHHHHhhccccCCCCCccccchHHHHHHHHHHHHhhcC
Q 039790 1337 VAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395 (1395)
Q Consensus 1337 ~~~~l~~~dp~i~~~~p~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1395 (1395)
|+++||++||+|++|+|+||++|++||++++.... .+...++||+|+|+||+|++.+|
T Consensus 82 vl~aid~~dp~i~~~~p~Il~~l~~~L~~~~~~~p-~~~~~~~i~~l~~~~~~l~~~~~ 139 (139)
T 2vxg_A 82 ALLAINMADPITREHAPKVLTELYRNCQQFIKNSP-KNSQFSNVRLLMKAIITYRDQLK 139 (139)
T ss_dssp HHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-CChHHhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999997643311 24455999999999999998775
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=331.30 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=218.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++ |+++|+|+ ..+|.+.....+ ...... .....|...|.+++|++++ +|
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd------------~~~~~~~~~~~~----~~~~~~-~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWA------------GSLWLFKDPCAA----PNEGFC-SAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCC------------EEEEEESSGGGT----TCGGGC-SEEEEESSCEEEEEEETTT-EE
T ss_pred EEECCCCCEEEEEe-CCceEEee------------ceeeeecccccc----CCccee-eeeeccCCCEEEEEEeCCC-eE
Confidence 45567777777776 77888887 223333211111 011111 2223456789999999985 68
Q ss_pred EEEEcCCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||+|+|||+.++. ...+.+|.+.|++|+| ++++++|++|+.||+|+|||+.+++ .
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~-spdg~~l~sgs~d~~i~iwd~~~~~--------------~ 161 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV-LSSGTQAVSGSKDICIKVWDLAQQV--------------V 161 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--------------E
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCc--------------E
Confidence 899999999999999873 2345689999999999 8999999999999999999999876 5
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE--cccCCCeEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV--GKHDGEITELS 383 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l--~~h~~~V~sla 383 (1395)
+..+..|...|++++|++++..+++++. ++.+.+||... ++. ...+ ..|...+++++
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~-------------------~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKP-------------------ASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSC-------------------EEECC----CCCEEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cce-------------------eeeeecceeeccceeee
Confidence 6677889999999999999987666555 55666665533 221 2222 34667899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
|+|+++++|++|+.||+|+|||+++++++.++.+|.+ .|++|+|+ |+|. +|++++ .|++|+|||+.++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fs----p~g~~~lasgs-~D~~i~vwd~~~~----- 290 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFS----PHSVPFLASLS-EDCSLAVLDSSLS----- 290 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEEC----SSSSCCEEEEE-TTSCEEEECTTCC-----
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEc----cCCCeEEEEEe-CCCeEEEEECCCC-----
Confidence 9998778999999999999999999999999999998 99999999 9985 566655 9999999999887
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++ .+.+|.+.+. .++|+|+|. +|++++.|++|++|++...+
T Consensus 291 -------~~~-~~~~H~~~V~---------~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 291 -------ELF-RSQAHRDFVR---------DATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -------EEE-EECCCSSCEE---------EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred -------cEE-EEcCCCCCEE---------EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 654 4677776654 499999886 67799999999999998743
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=322.32 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=218.3
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.....++.+|.+.|++++|++++++|++|+.||+|+|||+.++ ....+..|...|.+++| ++++.+|++|+.||.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY-APSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEE-CTTSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEE-CCCCCEEEEEeCCCeEEE
Confidence 4566789999999999999999999999999999999999887 47788899999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.++.. .......+..|...+.++.|++++ .+++++.++.+.+|+.... .
T Consensus 124 w~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~-~---------------- 175 (340)
T 1got_B 124 YNLKTREG----------NVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG-Q---------------- 175 (340)
T ss_dssp EETTTCSB----------SCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT-E----------------
T ss_pred EECccCCC----------cceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC-c----------------
Confidence 99987541 112344566788899999999876 4777777777777765332 1
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+..+.+|.+.|++++|+|++ .+|++|+.||+|++||++++.++.++.+|.. .|++++|+ |++.+|++++
T Consensus 176 ---~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~l~s~s- 245 (340)
T 1got_B 176 ---QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFF----PNGNAFATGS- 245 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEEC----TTSSEEEEEE-
T ss_pred ---EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEc----CCCCEEEEEc-
Confidence 156778899999999999998 8999999999999999999999999999997 99999999 9999999977
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.|++|+|||++++ +++..+..+... .....++|+++|.+|++|+.|+.|++||+..+
T Consensus 246 ~d~~v~iwd~~~~------------~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 246 DDATCRLFDLRAD------------QELMTYSHDNII-------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp TTSCEEEEETTTT------------EEEEEECCTTCC-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEECCCC------------cEEEEEccCCcc-------cceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999887 677666532211 11246899999999999999999999998764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=323.39 Aligned_cols=274 Identities=15% Similarity=0.147 Sum_probs=234.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++.|++|++|+... ...+..+..|...|.+++|+++|++|
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCCccEEEEEECCCCCEE
Confidence 56677788999999999999999441 13345667788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||.|+|||+.++ ....+.+|.+.|.++.| .+++ .|++|+.||+|++||+.++. .
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~-~l~s~s~d~~i~~wd~~~~~--------------~ 176 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN-QIVTSSGDTTCALWDIETGQ--------------Q 176 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE-EETT-EEEEEETTSCEEEEETTTTE--------------E
T ss_pred EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE-CCCC-cEEEEECCCcEEEEECCCCc--------------E
Confidence 99999999999999875 34578899999999999 6655 58999999999999999876 4
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
+..+..|...+.+++|+|++..+++++.++.+.+|+..... ....+.+|...|++++|+|
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------------------~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------------------CRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--------------------EEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--------------------eEEEEcCCcCCEEEEEEcC
Confidence 55667788899999999999877777778888888764321 1567788999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++ .+|++|+.||+|+|||++++..+..+..+. ...|++++|+ |+|++|++++ .|+.|+|||+.++
T Consensus 237 ~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~g~-~d~~i~vwd~~~~-------- 302 (340)
T 1got_B 237 NG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS----KSGRLLLAGY-DDFNCNVWDALKA-------- 302 (340)
T ss_dssp TS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC----TTSSEEEEEE-TTSEEEEEETTTC--------
T ss_pred CC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC----CCCCEEEEEC-CCCeEEEEEcccC--------
Confidence 98 899999999999999999999888876332 1269999999 9999999976 9999999999888
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|...+. +++|+++|.+|++|+.|+.|+|||
T Consensus 303 ----~~~~~~~~h~~~v~---------~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 ----DRAGVLAGHDNRVS---------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CEEEEEECCSSCEE---------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----cEeeEeecCCCcEE---------EEEEcCCCCEEEEEcCCccEEecC
Confidence 88999999987654 499999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=313.12 Aligned_cols=278 Identities=17% Similarity=0.204 Sum_probs=228.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|.+..|++++.||.|++|++. ....+..+..|...|.+++|++++++|
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYE----------------------------TQVEVRSIQVTETPVRAGKFIARKNWI 70 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETT----------------------------TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECC----------------------------CCceeEEeeccCCcEEEEEEeCCCCEE
Confidence 5667788899999999999999943 113456777899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ .+..+.+|.+.|++|+| ++++.+|++|+.||+|++||+.++. .....+
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~ 136 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTF 136 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEE-cCCCCEEEEECCCCeEEEEECCCCc-------------chhhhh
Confidence 99999999999999987 47789999999999999 8999999999999999999998764 134567
Q ss_pred cCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec--C
Q 039790 311 ADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ--W 387 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp--d 387 (1395)
..|...+.+++|+|.+ ..+++++.++.+.+|+....... .....+|...|..+.|++ +
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-------------------FTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS-------------------EEEECCCTTCEEEEEECCSTT
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc-------------------ceeccCCcCcEEEEEEEEcCC
Confidence 7888999999999965 45555555666666665332111 344456778899999987 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||+|+|||+++++++.++.+|.. .|.+++|+ |++.+|++++ .||+|+|||+.++
T Consensus 198 ~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~----p~~~~l~s~s-~Dg~i~iWd~~~~---------- 260 (304)
T 2ynn_A 198 K-PYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFH----PTLPIIISGS-EDGTLKIWNSSTY---------- 260 (304)
T ss_dssp C-CEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSEEEEEE-TTSCEEEEETTTC----------
T ss_pred C-CEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEEC----CCCCEEEEEc-CCCeEEEEECCCC----------
Confidence 4 7999999999999999999999999999997 99999999 9999999976 9999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCC--EEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL--FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~--~LaSgs~Dg~I~iWdl~~ 519 (1395)
++++++..+...+. +++++++|. +|++|+ ++.+.+|++..
T Consensus 261 --~~~~~~~~~~~~~~---------~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 261 --KVEKTLNVGLERSW---------CIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp --CEEEEECCSSSSEE---------EEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred --ceeeeccCCCccEE---------EEEECCCCCceEEEEec-CCceEEEEecc
Confidence 89999988766543 478777774 566666 45578888754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=317.57 Aligned_cols=269 Identities=20% Similarity=0.209 Sum_probs=220.7
Q ss_pred cceeeeeCCCC-CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 207 TPITKYISDPG-LVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~-~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+.++.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++. .....+|.+.|.+++| ++++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW-SPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE-CTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE-CCCCCEEEEEECCCc
Confidence 46678889988 99999999999999999999999999998873 2234789999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+..+. ..++..+..|...|.+++|+|++..+++++.++.+.+|+.......
T Consensus 85 v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------ 140 (345)
T 3fm0_A 85 TCIWKKNQDD------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------ 140 (345)
T ss_dssp EEEEEECCC-------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred EEEEEccCCC------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe------------
Confidence 9999998754 2245667788999999999999998888888888888876432211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
..+..+.+|...|++++|+|++ .+|++|+.|++|++||++.+. ++.++.+|.+ .|++|+|+ |+|++|
T Consensus 141 -----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~s----p~g~~l 209 (345)
T 3fm0_A 141 -----ECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFD----PSGQRL 209 (345)
T ss_dssp -----EEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC----TTSSEE
T ss_pred -----EEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEEC----CCCCEE
Confidence 1156678899999999999998 899999999999999998874 5678999997 99999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCC---CCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 440 ITGGPLNRELKIWASAEEEGWL---LPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~---~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
++++ .|++|+|||........ .......++|+.++.+ |...+ ..++|++++.+|++++.|+.|++|
T Consensus 210 ~s~s-~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 210 ASCS-DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI---------YDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp EEEE-TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE---------EEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEEe-CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE---------EEEEEecCCCEEEEEeCCCeEEEE
Confidence 9977 99999999975432110 1112245677777776 44433 259999999999999999999999
Q ss_pred EcCCCC
Q 039790 516 HMDYGP 521 (1395)
Q Consensus 516 dl~~g~ 521 (1395)
++..+.
T Consensus 280 ~~~~~~ 285 (345)
T 3fm0_A 280 QEDPNS 285 (345)
T ss_dssp EECTTS
T ss_pred EeCCCC
Confidence 997654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=328.92 Aligned_cols=267 Identities=18% Similarity=0.268 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+..++.+|.+.|++++|+|++++|++|+.||+|+|||+.++ ....+.+|...|.+++| ++++++|++|+.|+.|+||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~-s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF-APNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEE-CTTSSEEEECCSSSCCEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEE-CCCCCEEEEeeCCCcEEEE
Confidence 456789999999999999999999999999999999999887 47788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+.+....... ......+.+|...+.++.|+|++...+++|+ ++.+.+|+. ..+..
T Consensus 136 ~~~~~~~~~~~-------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~-~~~~~--------------- 192 (380)
T 3iz6_a 136 NLSSQADRDGN-------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQR--------------- 192 (380)
T ss_dssp ECCCCSSCCCS-------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT-TTCCE---------------
T ss_pred ECCCCccccCC-------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc-CCCcE---------------
Confidence 99864311100 0012345678888999999998765555555 555555554 33221
Q ss_pred cccceEEE-----cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 365 LINGVQLV-----GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 365 ~~~~~~~l-----~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
+..+ .+|...|.+++|++.++.+|++|+.||+|++||++ .+.++..+.+|.+ .|++|+|+ |+|.+
T Consensus 193 ----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~ 263 (380)
T 3iz6_a 193 ----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFF----PDGQR 263 (380)
T ss_dssp ----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEEEC----TTSSE
T ss_pred ----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEEEe----cCCCe
Confidence 2222 57999999999988544899999999999999998 5688999999998 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|++|+|||++++ .++..+..+...... ...+...++|+++|.+|++|+.||.|++||+.
T Consensus 264 l~s~s-~D~~i~lwd~~~~------------~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 264 FGTGS-DDGTCRLFDMRTG------------HQLQVYNREPDRNDN--ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEEEC-SSSCEEEEETTTT------------EEEEEECCCCSSSCC--SSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred EEEEc-CCCeEEEEECCCC------------cEEEEeccccccccc--ccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99966 9999999999998 888888765432111 11234579999999999999999999999987
Q ss_pred CCC
Q 039790 519 YGP 521 (1395)
Q Consensus 519 ~g~ 521 (1395)
.++
T Consensus 329 ~~~ 331 (380)
T 3iz6_a 329 LAE 331 (380)
T ss_dssp TCC
T ss_pred CCc
Confidence 643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=329.73 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=229.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|++..|++++.|++|++||.. ....+..+..|...|.+++|+|+|++|
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~----------------------------~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNAL----------------------------TSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETT----------------------------TTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----------------------------CCccceEEecCCCCEEEEEECCCCCEE
Confidence 5667777889999999999999843 113456677899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 232 CYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
++|+.|+.|+|||+.+. ....+.+|.+.|.++.|++.++.+|++|+.||+|++||+.++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------------ 191 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------------ 191 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------------
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------------
Confidence 99999999999998753 3457889999999999944456789999999999999999887
Q ss_pred EEEEEEe-----cCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 304 VVAIQIL-----ADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 304 i~~l~~~-----~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.+..+ ..|...+.+++|++ ++..+++++.++.+.+||...... .+..+.+|.+
T Consensus 192 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~ 250 (380)
T 3iz6_a 192 --RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEG 250 (380)
T ss_dssp --EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSS
T ss_pred --EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCC
Confidence 23333 45778899999988 455555555566676666543222 1567889999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.|++++|+|++ .+|++|+.||+|+|||++++.++..+..+.. ..|++++|+ |+|++|++++ .||.|+|
T Consensus 251 ~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~g~-~dg~i~v 324 (380)
T 3iz6_a 251 DINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS----ISGRLLFAGY-SNGDCYV 324 (380)
T ss_dssp CCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC----SSSSEEEEEC-TTSCEEE
T ss_pred CeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC----CCCCEEEEEE-CCCCEEE
Confidence 99999999998 8999999999999999999999998876532 148999999 9999999966 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEE----eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTL----ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl----~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||+.++ +++..+ .+|...+. +++|+++|.+|++|+.|+.|+||++..+
T Consensus 325 wd~~~~------------~~~~~~~~~~~~h~~~v~---------~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 325 WDTLLA------------EMVLNLGTLQNSHEGRIS---------CLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EETTTC------------CEEEEECCSCSSCCCCCC---------EEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCC------------ceEEEEecccCCCCCceE---------EEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999887 777776 44554443 5999999999999999999999998753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=312.78 Aligned_cols=288 Identities=15% Similarity=0.162 Sum_probs=229.5
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.+. +..|++++.|++|++|++... .. ..+.++..+.+|...|.+++|+++|++
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~--------~~---------------~~~~~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGD--------DQ---------------KFGVPVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEE--------TT---------------EEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCC--------Cc---------------cccccceEEeCCcccEEEEEECCCCCE
Confidence 344443 378999999999999993210 00 012456788999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++. ...+.+|...|.+++| ++++.+|++|+.||+|++||+.. . ++..
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~D~~i~vwd~~~-~--------------~~~~ 143 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKG-Q--------------CLAT 143 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSCEEEEEETTSCEEEEETTS-C--------------EEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCC-C--------------eEEE
Confidence 9999999999999999984 6789999999999999 89999999999999999999974 2 3455
Q ss_pred ecCCCCCccEEEEeCCCC------eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 310 LADGDSVHPRVCWHPHKQ------EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~------~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
+..|...+.++.|+|... .+++++.++.+.+|+.... . ....+.+|...|++++
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~-------------------~~~~~~~h~~~v~~~~ 203 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-Q-------------------IEADFIGHNSNINTLT 203 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCCSCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-h-------------------hheeecCCCCcEEEEE
Confidence 667888899999998543 5666666677777765331 1 1456778999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
|+|++ .+|++|+.||+|+|||+++++++.++..+. .|.+++|+ |++.+|++++ ++.|++|++...
T Consensus 204 ~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~s----p~~~~la~~~--~~~i~v~~~~~~------ 268 (319)
T 3frx_A 204 ASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQD--EVFSLAFS----PNRYWLAAAT--ATGIKVFSLDPQ------ 268 (319)
T ss_dssp ECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECCS--CEEEEEEC----SSSSEEEEEE--TTEEEEEEETTE------
T ss_pred EcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCC--cEEEEEEc----CCCCEEEEEc--CCCcEEEEeCcC------
Confidence 99998 899999999999999999999999998764 79999999 9999988855 567999999876
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.++..+..+.......+ ......++|++||.+|++|+.||.|++|++.++
T Consensus 269 ------~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 269 ------YLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------EEEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------eeeeccCccccccccCc-CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 66666654322111111 112346999999999999999999999998753
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=317.44 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=219.2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
......+.+|.+.|++++|++++++|++|+.||+|+|||..++ ....+..|...|.+++| ++++.+|++|+.|+.|++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~-sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY-APSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEE-CTTSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEE-CCCCCEEEEeeCCCCEEE
Confidence 4567889999999999999999999999999999999999887 46778889999999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|++......... . ....+..|...+.+++|++++..+++++.++.+.+|+.... .
T Consensus 133 ~~~~~~~~~~~~-----~---~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~---------------- 187 (354)
T 2pbi_B 133 YPLTFDKNENMA-----A---KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-Q---------------- 187 (354)
T ss_dssp EECCCCTTCCSG-----G---GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-C----------------
T ss_pred EEEecccccccc-----c---cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-e----------------
Confidence 999765421110 0 11233457888999999999988888888888888776432 1
Q ss_pred cccceEEEcccCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWL-TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+..+.+|...|.+++|+++. +.+|++|+.||+|++||+++++++..+.+|.. .|++++|+ |++.+|++++
T Consensus 188 ---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~l~s~s 259 (354)
T 2pbi_B 188 ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYY----PSGDAFASGS 259 (354)
T ss_dssp ---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEEEEEE
T ss_pred ---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEEe----CCCCEEEEEe
Confidence 156778899999999998852 27999999999999999999999999999997 99999999 9999999977
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|++|+|||++.+ +++..+..+... +....+.|+++|.+|++|+.|+.|++||+..+.
T Consensus 260 -~D~~v~lwd~~~~------------~~~~~~~~~~~~-------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 260 -DDATCRLYDLRAD------------REVAIYSKESII-------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -TTSCEEEEETTTT------------EEEEEECCTTCC-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCeEEEEECCCC------------cEEEEEcCCCcc-------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999999887 666666543321 122468999999999999999999999997753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=312.44 Aligned_cols=248 Identities=17% Similarity=0.185 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....++.+|.+.|++++|++++ ++|++|+.||+|++||+... .+..+.+|...|.+++| ++++.+|++|+.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE-CCCCCEEEEEeCC
Confidence 4556789999999999999965 89999999999999998753 35678999999999999 8999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|+|||+.+++ .+..+..|...|.+++|++++..+++++.++.+.+|+... .
T Consensus 87 ~~v~~wd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~----------- 139 (319)
T 3frx_A 87 KTLRLWDVATGE--------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--Q----------- 139 (319)
T ss_dssp SEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--C-----------
T ss_pred CEEEEEECCCCC--------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C-----------
Confidence 999999999886 4566778899999999999998888888888888887632 1
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCC-----CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWL-----TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg-----~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
.+..+.+|...|.++.|+|.+ ..+|++|+.|++|++||++++++...+.+|.+ .|++++|+ |
T Consensus 140 --------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~s----p 206 (319)
T 3frx_A 140 --------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTAS----P 206 (319)
T ss_dssp --------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEEC----T
T ss_pred --------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEc----C
Confidence 156677899999999999853 25899999999999999999999999999998 99999999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
+|++|++++ .|++|+|||+.++ +++.++..+.. + ..++|+++|.+|++++.+ .|++
T Consensus 207 ~g~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~-v---------~~~~~sp~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 207 DGTLIASAG-KDGEIMLWNLAAK------------KAMYTLSAQDE-V---------FSLAFSPNRYWLAAATAT-GIKV 262 (319)
T ss_dssp TSSEEEEEE-TTCEEEEEETTTT------------EEEEEEECCSC-E---------EEEEECSSSSEEEEEETT-EEEE
T ss_pred CCCEEEEEe-CCCeEEEEECCCC------------cEEEEecCCCc-E---------EEEEEcCCCCEEEEEcCC-CcEE
Confidence 999999977 9999999999988 88888876532 2 359999999999988754 5999
Q ss_pred EEcCC
Q 039790 515 IHMDY 519 (1395)
Q Consensus 515 Wdl~~ 519 (1395)
|++..
T Consensus 263 ~~~~~ 267 (319)
T 3frx_A 263 FSLDP 267 (319)
T ss_dssp EEETT
T ss_pred EEeCc
Confidence 99875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=306.16 Aligned_cols=291 Identities=17% Similarity=0.287 Sum_probs=235.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|.+.|++++|+++|++|++|+.||.|+|||..++ ....+.+|...|.+++| ++++++|++|+.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEE-cCCCCEEEEECCCCEEEEE
Confidence 455678899999999999999999999999999999999887 46788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.++.|+|++..+++++.++.+.+|+.....
T Consensus 93 d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------------ 140 (312)
T 4ery_A 93 DVSSGK--------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK------------------ 140 (312)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC------------------
T ss_pred ECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE------------------
Confidence 999877 455667788899999999999988888888888888764321
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+..|...|.+++|++++ .+|++|+.||.|++||+++++++..+..+....+.+++|+ |++++|++++ .
T Consensus 141 --~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~ 212 (312)
T 4ery_A 141 --CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS----PNGKYILAAT-L 212 (312)
T ss_dssp --EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC----TTSSEEEEEE-T
T ss_pred --EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEEC----CCCCEEEEEc-C
Confidence 156677899999999999998 8999999999999999999999888765444489999999 9999999977 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|+.|+|||+.++ +++..+.+|...... .......+++.+|++|+.||.|++||+..+.
T Consensus 213 d~~i~iwd~~~~------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---- 270 (312)
T 4ery_A 213 DNTLKLWDYSKG------------KCLKTYTGHKNEKYC------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 270 (312)
T ss_dssp TTEEEEEETTTT------------EEEEEECSSCCSSSC------CCEEEECSSSCEEEECCTTSCEEEEETTTCC----
T ss_pred CCeEEEEECCCC------------cEEEEEEecCCceEE------EEEEEEeCCCcEEEEECCCCEEEEEECCCch----
Confidence 999999999988 889999887754322 1123445789999999999999999998753
Q ss_pred cceeeeeeeecc-ccEEEEecCCC-CcC--c--CCCCeEEEEEcC
Q 039790 526 TRMDYIAEFTVT-MPILSLTGTTT-DAS--P--DGEHIVQIYCVQ 564 (1395)
Q Consensus 526 ~~~~~i~~f~~~-~~ils~~~~~~-d~~--~--s~dg~V~lWdv~ 564 (1395)
.+..+..+ ..++.+..... ..+ + ++|+.|++|+.+
T Consensus 271 ----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 ----IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ----hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 23333332 23333333321 111 1 357888888753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=317.73 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=230.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|++..|++++.|++|++|+... +. +.. ......+|...|.+++|+|+|++|
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~--~~--------~~~---------------~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEG--DS--------WIC---------------KSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEET--TE--------EEE---------------EEEECSSCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCC--Cc--------cee---------------eeeeccccCCcEEEEEECCCCCEE
Confidence 66778889999999999999999431 00 000 112235799999999999999999
Q ss_pred EEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
++|+.||+|+|||+..+ +...+.+|.+.|.+++| ++++++|++|+.||+|++||+.++. ...++.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~~-----------~~~~~~ 144 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW-APSGNLLATCSRDKSVWVWEVDEED-----------EYECVS 144 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEEECTTS-----------CEEEEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEE-eCCCCEEEEEECCCeEEEEECCCCC-----------CeEEEE
Confidence 99999999999999876 36788999999999999 8999999999999999999998764 233566
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
.+..|...+.+++|+|++..+++++.++.+.+|+...... .....+.+|...|++++|+|+|
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~------------------~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW------------------VCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE------------------EEEEEECCCSSCEEEEEECTTS
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE------------------EEEEEecCCCCceEEEEECCCC
Confidence 7778889999999999999888888888888887533110 0145678999999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCC---------------CceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 389 TTRLASASLDGTVKIWDDRK---------------STPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s---------------g~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|++|+.||+|+|||... +.++.++.+ |.. .|++++|+ +++..|++++ .|+.|++|
T Consensus 207 -~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~----~~~~~l~s~~-~d~~i~vw 279 (345)
T 3fm0_A 207 -QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR-TIYDIAWC----QLTGALATAC-GDDAIRVF 279 (345)
T ss_dssp -SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS-CEEEEEEC----TTTCCEEEEE-TTSCEEEE
T ss_pred -CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC-cEEEEEEe----cCCCEEEEEe-CCCeEEEE
Confidence 8999999999999999632 245666776 665 99999999 9999999977 99999999
Q ss_pred ECCCCCCCCCCCCcccccEE-EEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCT-QTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l-~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+...+.... ....... ..+.+|...+ ..++|+|++ .+|++|+.||.|++|++..++
T Consensus 280 ~~~~~~~~~----~~~~~~~~~~~~~h~~~V---------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 280 QEDPNSDPQ----QPTFSLTAHLHQAHSQDV---------NCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EECTTSCTT----SCCEEEEEEETTSSSSCE---------EEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EeCCCCCcc----eeeEEEEeeecccccCcE---------eEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 987651100 0001111 1123455443 359999988 599999999999999998754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=316.14 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=232.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..|++++.|++|++||... ......+..|...|.+++|+|+|.+|
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSSCCCEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCCCEEEEEECCCCCEE
Confidence 56677778999999999999999431 12334455678899999999999999
Q ss_pred EEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++|+.|+.|++|++... ....+.+|.+.|.+++| ++++.+|++|+.||+|++||+.+++
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~s~D~~v~lwd~~~~~------------- 187 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-TNSDMQILTASGDGTCALWDVESGQ------------- 187 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCC-------------
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCe-------------
Confidence 99999999999998643 35677899999999999 8999999999999999999999887
Q ss_pred EEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
.+..+..|...+.++.|++. +..+++++.++.+.+|+... +. .+..+.+|...|+++
T Consensus 188 -~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~-------------------~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 188 -LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQ-------------------CVQAFETHESDVNSV 246 (354)
T ss_dssp -EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CC-------------------EEEEECCCSSCEEEE
T ss_pred -EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-Cc-------------------EEEEecCCCCCeEEE
Confidence 45666778888999999885 45666666677777777643 21 156778899999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
+|+|++ .+|++|+.|++|++||++.+..+..+..+.. ..+.+++|+ |+|.+|++++ .|++|+|||+.++
T Consensus 247 ~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s----~~g~~l~~g~-~d~~i~vwd~~~~---- 316 (354)
T 2pbi_B 247 RYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS----LSGRLLFAGY-NDYTINVWDVLKG---- 316 (354)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTC----
T ss_pred EEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe----CCCCEEEEEE-CCCcEEEEECCCC----
Confidence 999998 8999999999999999999988887765431 268999999 9999999977 9999999999888
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|...+. .++|+++|.+|++|+.|++|++|+
T Consensus 317 --------~~~~~l~~h~~~v~---------~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 --------SRVSILFGHENRVS---------TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------SEEEEECCCSSCEE---------EEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------ceEEEEECCCCcEE---------EEEECCCCCEEEEEcCCCCEEecC
Confidence 88889998887654 499999999999999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=321.72 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=197.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.....+|...|.+++|++++++ ++|+.||+|+|||+.++. .....+|.+.|++|+| ++++++|++|+.||+|+
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~-spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV-FSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE-CSSSSEEEEEETTSCEE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE-CCCCCEEEEEeCCCeEE
Confidence 3445578899999999999865 567889999999998863 2345689999999999 89999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|||+.+++ .+..+..|...+++++|++++..+++++ .++.+.+|+... ++...
T Consensus 165 iwd~~~~~--------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~----------- 218 (357)
T 4g56_B 165 VWDLSQKA--------------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPAT----------- 218 (357)
T ss_dssp EEETTTTE--------------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBC-----------
T ss_pred EEECCCCc--------------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceee-----------
Confidence 99999876 5566678889999999999987555555 455566655433 22100
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLIT 441 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s 441 (1395)
...+..|...|++++|+|+++.+|++|+.|+.|+|||+++++++.++.+|.+ .|++|+|+ |++. +|++
T Consensus 219 ------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~s----p~~~~~las 287 (357)
T 4g56_B 219 ------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYS----YHSSPFLAS 287 (357)
T ss_dssp ------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEEC----SSSSCCEEE
T ss_pred ------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEc----CCCCCEEEE
Confidence 1123457788999999999778999999999999999999999999999997 99999999 8875 5666
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++ .|++|+|||+.++ +++..+ +|...+. .++|+| ++.+|++++.|++|++|++..
T Consensus 288 gs-~D~~i~iwd~~~~------------~~~~~~-~H~~~V~---------~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 288 IS-EDCTVAVLDADFS------------EVFRDL-SHRDFVT---------GVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EE-TTSCEEEECTTSC------------EEEEEC-CCSSCEE---------EEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred Ee-CCCEEEEEECCCC------------cEeEEC-CCCCCEE---------EEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 55 9999999999887 777654 5665543 489997 899999999999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=363.87 Aligned_cols=396 Identities=11% Similarity=0.119 Sum_probs=292.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++.||.|++|+.. .+..+..+.+|.+.|.+++|+++|++|
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~----------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAE----------------------------TGEKLLDIKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT----------------------------TCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECC----------------------------CCCEEEEeccCCCCEEEEEEecCCCEE
Confidence 5667777888888888888888843 123456777899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
++|+.||.|+|||+.++ .+..+.+|.+.|.+++| ++ ++.++++|+.||+|++||+.++. ++.
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~sg~~d~~v~vwd~~~~~--------------~~~ 737 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLWDLNQKE--------------CRN 737 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSCCEEEEEETTSCEEEEETTSSS--------------EEE
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-ecCCCceEEEEEeCCCeEEEEECCCcc--------------hhh
Confidence 99999999999999988 47788999999999999 66 56689999999999999999887 556
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-------------------------ccccCCCCC-----
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-------------------------ERFSAEEPL----- 358 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-------------------------~~~s~~~~~----- 358 (1395)
.+..|...+.+++|+|++..+++++.++.+.+|+....... ..|+.++..
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 66788899999999999998888888888888876543211 112222111
Q ss_pred --ccCccccccc---eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 359 --KCPVDELING---VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 359 --~~~~~~~~~~---~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
.+.+|+...+ .....+|...|.+++|+|++ .++++++.||.|++||+.++.++..+.+|.+ .|++++|+
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s---- 891 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLS-WVHGVMFS---- 891 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCSS-CEEEEEEC----
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCcc-ceEEEEEC----
Confidence 1112222222 12234799999999999998 8999999999999999999999999999998 99999999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCC-----------------------------------------------------
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGW----------------------------------------------------- 460 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~----------------------------------------------------- 460 (1395)
|+|.+|++++ .|+.|++||+.+....
T Consensus 892 pdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 892 PDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp TTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 9999999977 9999999997531000
Q ss_pred --------------CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 461 --------------LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 461 --------------~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+..-+.....++..+.+|...+ ..++|+++|.+|++++.||.|++|++.++..
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v---------~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~---- 1037 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV---------RHIQFTADGKTLISSSEDSVIQVWNWQTGDY---- 1037 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC---------CCEEECSSSSCEEEECSSSBEEEEETTTTEE----
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce---------EEEEECCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 0000001122233333343333 3489999999999999999999999987532
Q ss_pred ceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEe
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAF 599 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iW 599 (1395)
..+..+ ...+..+.......+ .+.|+.|++||+.++... ..+.....|+.+++++ +++++ .++.+++|
T Consensus 1038 --~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s-~d~~v~iw 1112 (1249)
T 3sfz_A 1038 --VFLQAH--QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS-ADKTAKIW 1112 (1249)
T ss_dssp --ECCBCC--SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC-CSSCCCEE
T ss_pred --EEEecC--CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc-CCCcEEEE
Confidence 111111 223333333320111 356899999999998753 3345556677777765 55555 44667799
Q ss_pred ecCCCCcceeeccCCC
Q 039790 600 DVANPDGSASLESSHG 615 (1395)
Q Consensus 600 D~~tg~~~~~l~g~~~ 615 (1395)
|+.++.++..+.++.+
T Consensus 1113 d~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp CSSSSSCSBCCCCCSS
T ss_pred ECCCcceeeeeccCCC
Confidence 9999999999986554
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=310.79 Aligned_cols=290 Identities=15% Similarity=0.142 Sum_probs=216.8
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK 236 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~ 236 (1395)
++..|++++.|++|++|++..... ....+.++..+.+|...|.+++|++++.+|++|+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~---------------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ---------------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC---------------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc---------------------ccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 668999999999999999442110 00112445678899999999999999999999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
||+|+|||+.++ ....+.+|.+.|++++| ++++.+|++|+.||+|++||+.... .........|..
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-sp~~~~l~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~~ 163 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAF-SPDNRQILSAGAEREIKLWNILGEC------------KFSSAEKENHSD 163 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEE-CSSTTEEEEEETTSCEEEEESSSCE------------EEECCTTTSCSS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEE-CCCCCEEEEEcCCCEEEEEeccCCc------------eeeeecccCCCc
Confidence 999999999987 46788999999999999 8999999999999999999997322 011111125677
Q ss_pred CccEEEEeCCC----------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 316 VHPRVCWHPHK----------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 316 ~v~~v~~sp~~----------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+.+++|+|++ ..+++++.++.+.+|+. .. . ....+.+|...|++++|+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~-------------------~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF-Q-------------------IRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT-E-------------------EEEEEECCSSCEEEEEEC
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC-c-------------------eeEEEcCccccceEEEEC
Confidence 88899999987 45666666677766662 11 1 145677899999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
|+| .+|++|+.||+|+|||++. +.+...+. +.. .|.+++|+ |++.+|++ | .|+.|+|||+.+++.
T Consensus 223 ~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~-~v~~v~~s----p~~~~la~-~-~d~~v~iw~~~~~~~----- 288 (343)
T 2xzm_R 223 PNG-KYIATGGKDKKLLIWDILNLTYPQREFD-AGS-TINQIAFN----PKLQWVAV-G-TDQGVKIFNLMTQSK----- 288 (343)
T ss_dssp TTS-SEEEEEETTCEEEEEESSCCSSCSEEEE-CSS-CEEEEEEC----SSSCEEEE-E-ESSCEEEEESSSCCS-----
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCcccceeec-CCC-cEEEEEEC----CCCCEEEE-E-CCCCEEEEEeCCCCC-----
Confidence 998 8999999999999999954 45555554 333 79999999 99987765 5 688999999987611
Q ss_pred CcccccEEEEEeccCccccc--ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 465 DIESWKCTQTLELKSSAELR--LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~--~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..+.++..+...... ......+..++|+++|.+|++|+.||.|++|++.+|
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 289 -----APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -----CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -----CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 111122211000000 000112346999999999999999999999998764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=314.55 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=212.6
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------------CceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------------ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------------~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.|...|.+++|++||++|++|+ |+++|+||... +.......|...|.+++| +++ ..|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-VGE-RGILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-ETT-TEEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-eCC-CeEEEEECCCE
Confidence 4667799999999999999887 67888887321 112233446778999999 777 47889999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+.+++... .......+|...|++++|+|++..+++++.++.+.+|+.... .
T Consensus 105 v~lWd~~~~~~~~----------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~------------- 160 (344)
T 4gqb_B 105 VELWELDENETLI----------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-V------------- 160 (344)
T ss_dssp EEEEEECTTSSCE----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-E-------------
T ss_pred EEEEeccCCCcee----------EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-------------
Confidence 9999999876211 112234578899999999999988888777888888876432 1
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeecCCCCC-cE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIGPHPQH-IV 438 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~~~pdg-~~ 438 (1395)
.+..+.+|.+.|++++|++++..+|++|+.||+|+|||+++++++..+.. |.. .+.+++|+ |++ .+
T Consensus 161 ------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~----p~~~~~ 229 (344)
T 4gqb_B 161 ------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY-LPTSLAWH----PQQSEV 229 (344)
T ss_dssp ------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC-CEEEEEEC----SSCTTE
T ss_pred ------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec-cceeeeec----CCCCcc
Confidence 16778899999999999999867899999999999999999999988753 333 79999998 755 45
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEc
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl 517 (1395)
|+++ +.||+|+|||++++ +++.++.+|...+. .++|+++| .+|++|+.|++|+|||+
T Consensus 230 l~sg-~~dg~v~~wd~~~~------------~~~~~~~~h~~~v~---------~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 230 FVFG-DENGTVSLVDTKST------------SCVLSSAVHSQCVT---------GLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEE-ETTSEEEEEESCC--------------CCEEEECCSSCEE---------EEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eEEe-ccCCcEEEEECCCC------------cEEEEEcCCCCCEE---------EEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 6664 49999999999988 89999999987764 48999998 58999999999999998
Q ss_pred CCCCCCCCcceeeeeeeecc-ccEEEEecCCC-Cc-C--cCCCCeEEEEEcCCCc
Q 039790 518 DYGPNPASTRMDYIAEFTVT-MPILSLTGTTT-DA-S--PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 518 ~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~-d~-~--~s~dg~V~lWdv~t~~ 567 (1395)
.+++ + ..+.+| ..+.++..... .. + .+.|+.|++|++.+..
T Consensus 288 ~~~~------~---~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSE------L---FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCE------E---EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCc------E---EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 7752 1 122222 23444433320 11 2 2457778888777653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=299.71 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=232.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+.+..|++++.|+.|++|+... +..+..+.+|...|.+++|++++++|
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCCceEEEEEcCCCCEE
Confidence 55667778899999999999998431 13345667899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ .+..+.+|...|.+++| ++++++|++|+.||+|++||+.+++ .+..+
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~ 145 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGK--------------CLKTL 145 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEETTTCC--------------EEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCE--------------EEEEe
Confidence 99999999999999987 47788999999999999 8999999999999999999999877 45566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+.+++|++++..+++++.++.+.+|+....... ......|...+.+++|+|++ .
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~ 205 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-------------------KTLIDDDNPPVSFVKFSPNG-K 205 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------------EEECCSSCCCEEEEEECTTS-S
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-------------------eEEeccCCCceEEEEECCCC-C
Confidence 778888999999999988888888888888876432110 12234567789999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+|++++.||.|++||+++++++..+.+|.. .+. ...|+ .+++.+|++++ .||.|++||+.++
T Consensus 206 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~l~sg~-~dg~i~vwd~~~~----------- 269 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKN-EKYCIFANFS---VTGGKWIVSGS-EDNLVYIWNLQTK----------- 269 (312)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEECSSCC-SSSCCCEEEE---CSSSCEEEECC-TTSCEEEEETTTC-----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEEecCC-ceEEEEEEEE---eCCCcEEEEEC-CCCEEEEEECCCc-----------
Confidence 999999999999999999999999999875 433 23444 15677888755 9999999999988
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
+++..+.+|...+. .++|++++.+|++++ .|+.|++|+.+
T Consensus 270 -~~~~~~~~h~~~v~---------~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 -EIVQKLQGHTDVVI---------STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -CEEEEECCCSSCEE---------EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -hhhhhhhccCCcEE---------EEeecCcCCceEEEEccCCccEEEecCC
Confidence 89999999887654 489999999999987 69999999964
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-30 Score=300.95 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=210.3
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....+|+||.+.|++++|+|+ +++|++|+.||+|+|||+..+ ....+.+|...|.+++| ++++.+|++|+.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~-s~dg~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-SSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE-CCCCCEEEEEccc
Confidence 455679999999999999997 689999999999999999764 35678999999999999 8999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.|++|+..... .......+...+..+.+++.+..+++++.++.+.+|+.......
T Consensus 108 ~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---------- 163 (340)
T 4aow_A 108 GTLRLWDLTTGT--------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---------- 163 (340)
T ss_dssp SEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred ccceEEeecccc--------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE----------
Confidence 999999998765 34444556677778899999988888877888877765332111
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+.+|...|.+++|++++. .++++++.|++|++||+++++++..+.+|.+ .|++|+|+ |++++
T Consensus 164 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s----~~~~~ 229 (340)
T 4aow_A 164 ---------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVS----PDGSL 229 (340)
T ss_dssp ---------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC----TTSSE
T ss_pred ---------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEEC----CCCCE
Confidence 234567999999999998753 4789999999999999999999999999998 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|++|+|||+++. +++..+..+.. ...++|++++.+++ ++.|+.|++||+.
T Consensus 230 l~s~s-~Dg~i~iwd~~~~------------~~~~~~~~~~~----------v~~~~~~~~~~~~~-~~~d~~i~iwd~~ 285 (340)
T 4aow_A 230 CASGG-KDGQAMLWDLNEG------------KHLYTLDGGDI----------INALCFSPNRYWLC-AATGPSIKIWDLE 285 (340)
T ss_dssp EEEEE-TTCEEEEEETTTT------------EEEEEEECSSC----------EEEEEECSSSSEEE-EEETTEEEEEETT
T ss_pred EEEEe-CCCeEEEEEeccC------------ceeeeecCCce----------EEeeecCCCCceee-ccCCCEEEEEECC
Confidence 99977 9999999999988 88888876542 23588999887664 5569999999987
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
.+
T Consensus 286 ~~ 287 (340)
T 4aow_A 286 GK 287 (340)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=307.06 Aligned_cols=267 Identities=18% Similarity=0.280 Sum_probs=205.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEe-cc-CCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLL-RG-HTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l-~~-H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|+++ +||+|+.||.|+|||+..+ ....+ .+ |.+.|++|+| ++++.+|++|+.||+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE-CTTSSEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE-CCCCCEEEEEeCCCc
Confidence 467789999999999999987 9999999999999999875 23444 44 9999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+...... ......+..+..|...|.+++|+|++..+++++.++.+.+|+....+..
T Consensus 82 v~iw~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~------------ 142 (330)
T 2hes_X 82 VSIWAKEESADR-------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE------------ 142 (330)
T ss_dssp EEEEEC--------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC------------
T ss_pred EEEEEcccCcCc-------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC------------
Confidence 999999653200 0011245566788899999999999988888888888888876432210
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCC--Cc
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQ--HI 437 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pd--g~ 437 (1395)
...+..+.+|...|++++|+|++ .+|++|+.|++|+|||++.+ .++..+.+|.+ .|++++|+ |+ +.
T Consensus 143 ----~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~~ 212 (330)
T 2hes_X 143 ----YECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFD----KTEGVF 212 (330)
T ss_dssp ----CEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC----CSSSSC
T ss_pred ----eEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEec----CCCCee
Confidence 01156778899999999999998 89999999999999999876 78899999998 99999999 77 66
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+|++++ .|++|+|||+..+.. .....+.+...+.. |...+ ..++|++++ +|++++.||.|++|+
T Consensus 213 ~l~s~s-~D~~v~iw~~~~~~~----~~~~~~~~~~~~~~~h~~~v---------~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 213 RLCSGS-DDSTVRVWKYMGDDE----DDQQEWVCEAILPDVHKRQV---------YNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEE-TTSCEEEEEEEEECT----TSCEEEEEEEECCSCCSSCE---------EEEEECTTS-CEEEEETTSCEEEEE
T ss_pred EEEEEe-CCCeEEEEEecCCCc----cccceeEEeeecccccccce---------EEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 788866 999999999976411 01123355555554 44443 358888655 789999999999999
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
+..+
T Consensus 278 ~~~~ 281 (330)
T 2hes_X 278 EVDG 281 (330)
T ss_dssp EETT
T ss_pred cCCC
Confidence 8654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=305.03 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=206.7
Q ss_pred cceeeeeCCCCCEEEEEE-----ec-CCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCE
Q 039790 207 TPITKYISDPGLVLGRQI-----AV-NRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHL 272 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~-----Sp-dg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~ 272 (1395)
..+..+.+|.+.|++++| ++ ++++|++|+.||+|+|||+..+ ....+.+|...|++++| ++++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-SQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE-CSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE-CCCCCE
Confidence 456789999999999999 76 9999999999999999998753 35678999999999999 899999
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccc
Q 039790 273 LASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERF 352 (1395)
Q Consensus 273 LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~ 352 (1395)
|++|+.||+|+|||+.+++ .+..+..|...|.+++|+|++..+++++.++.+.+|+...... +
T Consensus 91 l~s~s~D~~v~lwd~~~~~--------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---~ 153 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT--------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---F 153 (343)
T ss_dssp EEEEETTSEEEEEETTSSC--------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---E
T ss_pred EEEEcCCCcEEEEECCCCc--------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---e
Confidence 9999999999999999887 4556678889999999999999988888888888888642100 0
Q ss_pred cCCCCCccCccccccceEEEcccCCCeEEEEEecCCC---------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCe
Q 039790 353 SAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT---------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPV 423 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~---------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V 423 (1395)
. .....+|...|.+++|+|++. .+|++++.||+|++|| ..+..+..+.+|.+ .|
T Consensus 154 ~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v 216 (343)
T 2xzm_R 154 S---------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NV 216 (343)
T ss_dssp E---------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CE
T ss_pred e---------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cc
Confidence 0 011136889999999999862 5899999999999999 56778889999987 99
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL 503 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L 503 (1395)
++++|+ |+|++|++++ .|+.|+|||+.... .....+.. ... +..++|++++.+|
T Consensus 217 ~~~~~s----~~g~~l~sgs-~dg~v~iwd~~~~~-----------~~~~~~~~-~~~---------v~~v~~sp~~~~l 270 (343)
T 2xzm_R 217 NHLSIS----PNGKYIATGG-KDKKLLIWDILNLT-----------YPQREFDA-GST---------INQIAFNPKLQWV 270 (343)
T ss_dssp EEEEEC----TTSSEEEEEE-TTCEEEEEESSCCS-----------SCSEEEEC-SSC---------EEEEEECSSSCEE
T ss_pred eEEEEC----CCCCEEEEEc-CCCeEEEEECCCCc-----------ccceeecC-CCc---------EEEEEECCCCCEE
Confidence 999999 9999999977 99999999995430 23333432 222 2359999999988
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 039790 504 LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 504 aSgs~Dg~I~iWdl~~g~ 521 (1395)
+++ .|+.|++|++.++.
T Consensus 271 a~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 271 AVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEE-ESSCEEEEESSSCC
T ss_pred EEE-CCCCEEEEEeCCCC
Confidence 755 57789999998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=311.92 Aligned_cols=299 Identities=15% Similarity=0.133 Sum_probs=221.7
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
.+.+++++..|++++ ++.+++|++. +|+.+ ...+...... ...........+...|.+++|+++|
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKD----------PENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC---------------------------CCCCBEEEEEECTTS
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccc----------cccccccccCCCceeEEEEEECCCC
Confidence 366788888888876 6889999954 45544 1111000000 0000011122345579999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.||.|+|||+.++. ...+.+|...|++++| ++++.+|++|+.||+|++||+.+++ +.
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~p~~~~l~s~s~d~~v~iwd~~~~~--------------~~ 200 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQ--------------CS 200 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTE--------------EE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEE-cCCCCEEEEecCCCcEEEEECCCCe--------------eE
Confidence 999999999999999999874 6788999999999999 8999999999999999999999876 22
Q ss_pred EEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..+. +...+.+++|+| ++..+++++.++.+.+|+........ ..........+|...|++++|+|
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~-------------~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-------------RLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-------------EEC------CCCSSCEEEEEECT
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-------------eecccccCCCCCCCCEEEEEECC
Confidence 2222 345688999999 56666666666667666653321100 00000122357999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC------------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 387 WLTTRLASASLDGTVKIWDDRK------------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~s------------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+| .+|++|+.||+|++||+++ +.+..++.+|.+ .|.+++|+ +++.+|++++ .|+.|+|||+
T Consensus 267 ~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~l~sgs-~D~~v~iwd~ 339 (393)
T 1erj_A 267 DG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATT----QNDEYILSGS-KDRGVLFWDK 339 (393)
T ss_dssp TS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEEC----GGGCEEEEEE-TTSEEEEEET
T ss_pred CC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEEC----CCCCEEEEEe-CCCeEEEEEC
Confidence 98 8999999999999999975 356778889987 99999999 9999999976 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC------CCCEEEEEeCCCeEEEEEcCC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR------AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~------dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++ +++..+.+|...+.. ++|++ ++.+|++|+.|++|+||++..
T Consensus 340 ~~~------------~~~~~l~~h~~~v~~---------v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 340 KSG------------NPLLMLQGHRNSVIS---------VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTC------------CEEEEEECCSSCEEE---------EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCC------------eEEEEECCCCCCEEE---------EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 988 889999999876544 66654 789999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=313.62 Aligned_cols=250 Identities=15% Similarity=0.148 Sum_probs=197.0
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEc------CCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLK------LGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~------DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...|...|++++|+|||++||+|+. ||.|++|+..++. .....+|...|++++| ++++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-VSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE-ETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE-cCCCC-EEEEECCC
Confidence 3469999999999999999999997 7889999987752 3355679999999999 78765 56788999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|+|||+.+++..... ......|...|.+++|+|++..+++++.++.+.+|+.... .
T Consensus 116 ~v~lWd~~~~~~~~~~----------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~------------ 172 (357)
T 4g56_B 116 AVELWEILEKESLLVN----------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A------------ 172 (357)
T ss_dssp CEEEC--------CCC----------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-E------------
T ss_pred EEEEeeccccceeEEE----------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c------------
Confidence 9999999987632211 1123467889999999999998888888888888876432 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCc-
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHI- 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~- 437 (1395)
.+..+.+|.+.|++++|++++..+|++++.||+|+|||+++++++..+. .|.. .|++|+|+ |++.
T Consensus 173 -------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~-~v~~v~~s----p~~~~ 240 (357)
T 4g56_B 173 -------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT-IPTSVTWH----PEKDD 240 (357)
T ss_dssp -------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS-CEEEEEEC----TTSTT
T ss_pred -------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc-cccchhhh----hcccc
Confidence 1567788999999999999986789999999999999999998877654 4554 89999999 8765
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWd 516 (1395)
+|++ |+.|+.|+|||++++ ++++++.+|...+. .++|++++ .+|++|+.|++|+|||
T Consensus 241 ~la~-g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~---------~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 241 TFAC-GDETGNVSLVNIKNP------------DSAQTSAVHSQNIT---------GLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp EEEE-EESSSCEEEEESSCG------------GGCEEECCCSSCEE---------EEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eEEE-eecccceeEEECCCC------------cEeEEEeccceeEE---------EEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 5555 559999999999988 88899998887654 48999987 5899999999999999
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
+.++
T Consensus 299 ~~~~ 302 (357)
T 4g56_B 299 ADFS 302 (357)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9775
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=318.88 Aligned_cols=292 Identities=14% Similarity=0.187 Sum_probs=230.2
Q ss_pred ccCCCCCC-eEEee----------cCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEE
Q 039790 152 PTLPPPSD-STVVI----------PSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVL 220 (1395)
Q Consensus 152 ~s~p~p~~-~Las~----------s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~ 220 (1395)
+.++|++. .|+++ +.|+.|++|++... .. ..++..+ .|...|.
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~--------------------~~-----~~~~~~~-~~~~~v~ 71 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--------------------DS-----EKPIASL-QVDSKFN 71 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG--------------------GG-----CSCSCCC-CCSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC--------------------CC-----CcEEEEE-ecCCceE
Confidence 55666664 88888 88999999995411 00 0122223 4788999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC-----CceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCC
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIIT-----ALRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~-----~~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
+++|++++++|++|+.||.|+|||+.+ .....+.+|.+.|++++| +++ +.+|++|+.||+|++||+.++....
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF-NAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE-CSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE-cCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999999999999999999999988 267788999999999999 776 8999999999999999999875110
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.. .....+.....|...+.+++|++++..++++ +.++.+.+|+... +.. +..+.
T Consensus 151 ~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~-------------------~~~~~ 205 (416)
T 2pm9_A 151 SN-----YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKE-------------------VIHLS 205 (416)
T ss_dssp TT-----CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEE-------------------EEEEC
T ss_pred cc-----ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCc-------------------ceEEe
Confidence 00 0000111234577889999999995545555 4556666666543 211 33344
Q ss_pred cc------CCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCC-ceeEEec-CCCCCCeeEEEEeecCCC-CCcEEEE
Q 039790 374 KH------DGEITELSMCQWLTTRLASASLDG---TVKIWDDRKS-TPLAVLR-PYDGHPVNCVTFLIGPHP-QHIVLIT 441 (1395)
Q Consensus 374 ~h------~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg-~~l~tl~-~h~~~~V~sV~fs~~~~p-dg~~L~s 441 (1395)
.| ...|++++|+|++..+|++++.|+ .|++||++++ .++..+. +|.. .|++++|+ | ++.+|++
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~~l~s 280 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWC----HQDEHLLLS 280 (416)
T ss_dssp CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEEC----SSCSSCEEE
T ss_pred ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeC----CCCCCeEEE
Confidence 33 789999999999867999999999 9999999997 7788888 8987 99999999 8 8999999
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEcCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++ .|+.|+|||+.++ +++.++..|...+.. ++|++++ .+|++++.|+.|++|++..+
T Consensus 281 ~~-~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~---------~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 281 SG-RDNTVLLWNPESA------------EQLSQFPARGNWCFK---------TKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EE-SSSEEEEECSSSC------------CEEEEEECSSSCCCC---------EEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred Ee-CCCCEEEeeCCCC------------ccceeecCCCCceEE---------EEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 77 9999999999988 899999988876644 8999999 89999999999999999876
Q ss_pred CC
Q 039790 521 PN 522 (1395)
Q Consensus 521 ~~ 522 (1395)
..
T Consensus 339 ~~ 340 (416)
T 2pm9_A 339 TN 340 (416)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=306.58 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=210.8
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeee-e-CCCCCEEEEEEecCCCEEEEEE
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY-I-SDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l-~-~h~~~V~~va~Spdg~~LasGs 235 (1395)
+..|++++.|++|++|++.... ...+..+ . +|.+.|.+++|+|++++|++|+
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 3489999999999999954110 0122233 2 3999999999999999999999
Q ss_pred cCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 236 KLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
.||+|+|||+... ....+.+|.+.|++++| ++++++|++|+.||+|+|||+..... ...++
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-sp~g~~las~s~D~~v~iwd~~~~~~----------~~~~~ 146 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGE----------EYECI 146 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEE-CTTSCEEEEEETTSCEEEEECCTTCC----------CCEEE
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEeccCCCC----------CeEEE
Confidence 9999999998532 35678899999999999 89999999999999999999954320 12345
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
..+..|...+.+++|+|++..+++++.++.+.+|+..... ...+..+.+|.+.|++++|+|+
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~------------------~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------------------WECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------------EEEEEEECCCSSCEEEEEECCS
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC------------------eeEEEEccCCCCcEEEEEecCC
Confidence 6677888999999999999888887778888888753211 0115678899999999999998
Q ss_pred C-CcEEEEEeCCCcEEEEeCCCC--------ceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 388 L-TTRLASASLDGTVKIWDDRKS--------TPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 388 g-~~~LaSgs~Dg~IrIWDl~sg--------~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+ ..+|++|+.|++|+|||++.+ .++..+.+ |.. .|++|+|+ +++ +|+++| .||+|+|||..++
T Consensus 209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s----~~~-~l~s~~-~dg~v~iw~~~~~ 281 (330)
T 2hes_X 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR-QVYNVAWG----FNG-LIASVG-ADGVLAVYEEVDG 281 (330)
T ss_dssp SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS-CEEEEEEC----TTS-CEEEEE-TTSCEEEEEEETT
T ss_pred CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc-ceEEEEEc----CCC-EEEEEe-CCCEEEEEEcCCC
Confidence 3 268999999999999998765 45666665 776 99999998 655 778866 9999999998765
Q ss_pred CCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeC--CCCEEEEEeCCCeEEEEEcCC
Q 039790 458 EGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNR--AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~--dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++++..+ ..|.. +....++|++ ++.+|++|+.||.|+||+++.
T Consensus 282 ----------~~~~~~~~~~~h~~--------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 ----------EWKVFAKRALCHGV--------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----------EEEEEEEESCTTTT--------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ----------ceEEEecccccccc--------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 11233222 33432 1223588988 799999999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-30 Score=307.96 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=230.4
Q ss_pred cccCCCCCC-eEEeecCCCCEEEEeCcC--CCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC
Q 039790 151 SPTLPPPSD-STVVIPSAPPVRLRSSKV--PKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN 227 (1395)
Q Consensus 151 ~~s~p~p~~-~Las~s~Dg~Vrlwd~~s--p~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd 227 (1395)
.+.+.+.+. .|++++.|+.|++|++.. .+|+.+..-.....+.... .......+|.+.|++++|+++
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF----------ALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC----------CCC------CBCEEEEEECTT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc----------cccccccCCCCceEEEEEcCC
Confidence 366677777 999999999999999510 1222110000111111110 011123347889999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+++|++|+.||.|+|||........+.+|...|.+++| ++++.+|++++.||.|++||+.++. .+
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~ 184 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKW-NKDGTHIISMDVENVTILWNVISGT--------------VM 184 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEE-CTTSSEEEEEETTCCEEEEETTTTE--------------EE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEE-CCCCCEEEEEecCCeEEEEECCCCc--------------EE
Confidence 99999999999999999666678889999999999999 8999999999999999999998876 22
Q ss_pred EEecCCCCC---------------ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 308 QILADGDSV---------------HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 308 ~~~~~~~~~---------------v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
..+..+... +.+++|++++ .+++++.++.+.+|+..... ....+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~--------------------~~~~~ 243 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT--------------------PTGKL 243 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--------------------CSEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--------------------eeeee
Confidence 233333333 8899999875 57777778888888764321 14567
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|...|++++|+|++ .+|++++.||.|++||+++++++..+.+|.. .|.+++|+ |++ +|++++ .|+.|++|
T Consensus 244 ~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~-~l~~~~-~d~~i~i~ 315 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWV----GDD-KVISCS-MDGSVRLW 315 (425)
T ss_dssp CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSS-CEEEEEEE----TTT-EEEEEE-TTSEEEEE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCc-cEEEEEEC----CCC-EEEEEe-CCCcEEEE
Confidence 7899999999999998 7999999999999999999999999999987 99999999 888 888766 99999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|+.++ +++..+..|...+. .++|+++|.+|++++.||.|++|++..+.
T Consensus 316 d~~~~------------~~~~~~~~~~~~i~---------~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 316 SLKQN------------TLLALSIVDGVPIF---------AGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTTT------------EEEEEEECTTCCEE---------EEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ECCCC------------cEeEecccCCccEE---------EEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99988 88888888776543 48999999999999999999999997643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-30 Score=309.58 Aligned_cols=256 Identities=16% Similarity=0.238 Sum_probs=202.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCC------------------CCeEEEEEeeCCCCEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHT------------------QRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~------------------~~V~slaf~s~dg~~La 274 (1395)
+|.+.|.|++|+|||++||+|+ ++.++||++.++. +..+.+|. ..|.+++| ++++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-SPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-CTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-CCCCCEEE
Confidence 5999999999999999999987 6899999999874 44555443 24999999 89999999
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+|+.||+|+|||+.+++ .+..+..|...|.+++|+|++..+++++.++.+.+|+.... ..
T Consensus 140 s~~~d~~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~----- 199 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QC----- 199 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EE-----
T ss_pred EEcCCCeEEEEECCCCc--------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-ee-----
Confidence 99999999999999876 45567788899999999999998888777877777776431 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-------cCCCCCCeeEEE
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-------RPYDGHPVNCVT 427 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-------~~h~~~~V~sV~ 427 (1395)
...+ .|...+.+++|+|.++.+|++|+.||+|+|||++++.++..+ .+|.+ .|++|+
T Consensus 200 --------------~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~ 263 (393)
T 1erj_A 200 --------------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVV 263 (393)
T ss_dssp --------------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEE
T ss_pred --------------EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEE
Confidence 2233 366789999999933389999999999999999999988877 57887 999999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |+|++|++++ .|++|+|||+++..............|..++.+|...+. .++|++++.+|++|+
T Consensus 264 ~~----~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 264 FT----RDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL---------SVATTQNDEYILSGS 329 (393)
T ss_dssp EC----TTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEE---------EEEECGGGCEEEEEE
T ss_pred EC----CCCCEEEEEe-CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE---------EEEECCCCCEEEEEe
Confidence 99 9999999976 999999999986521111111123467778888876543 489999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 039790 508 KKNAIYAIHMDYGP 521 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~ 521 (1395)
.|+.|++||+.++.
T Consensus 330 ~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 330 KDRGVLFWDKKSGN 343 (393)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCe
Confidence 99999999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=297.90 Aligned_cols=257 Identities=18% Similarity=0.217 Sum_probs=203.3
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFI 284 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~I 284 (1395)
+..+.+|.+.|++++|+++|++||+|+.||+|+|||+.++ .+..+.+|.+.|++++|+++ ++++|++|+.||+|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3567889999999999999999999999999999999753 56789999999999999333 4899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
||+.++... .+..+..|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 82 Wd~~~~~~~------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~------------- 136 (297)
T 2pm7_B 82 WKEENGRWS------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT------------- 136 (297)
T ss_dssp EEBSSSCBC------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-------------
T ss_pred EEcCCCceE------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-------------
Confidence 999876411 12344567888999999997 666666666777777766432110
Q ss_pred cccccceEEEcccCCCeEEEEEecCC------------CcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWL------------TTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg------------~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV 426 (1395)
....+.+|...|++++|+|++ +.+|++|+.|++|+|||++++. ++.++.+|.+ .|++|
T Consensus 137 -----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v 210 (297)
T 2pm7_B 137 -----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDV 210 (297)
T ss_dssp -----CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEE
T ss_pred -----eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEE
Confidence 034567899999999999973 2699999999999999998876 6778999997 99999
Q ss_pred EEeecCCCCC---cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE--eccCcccccccccccceEEEEeCCCC
Q 039790 427 TFLIGPHPQH---IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL--ELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 427 ~fs~~~~pdg---~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl--~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
+|+ |++ .+|++++ .|++|+|||+.+..+ . .....+ ..|... ...++|+++|.
T Consensus 211 ~~s----p~~~~~~~las~s-~D~~v~iWd~~~~~~--------~-~~~~~~~~~~~~~~---------v~~~~~s~~g~ 267 (297)
T 2pm7_B 211 AWS----PTVLLRSYMASVS-QDRTCIIWTQDNEQG--------P-WKKTLLKEEKFPDV---------LWRASWSLSGN 267 (297)
T ss_dssp EEC----CCCSSSEEEEEEE-TTSCEEEEEESSTTS--------C-CEEEESSSSCCSSC---------EEEEEECSSSC
T ss_pred EEC----CCCCCceEEEEEE-CCCcEEEEEeCCCCC--------c-cceeeeecccCCCc---------EEEEEECCCCC
Confidence 999 874 7888866 999999999976411 0 111222 122222 23689999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 039790 502 FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|++++.|+.|+||+...
T Consensus 268 ~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCcEEEEEECC
Confidence 999999999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=341.65 Aligned_cols=254 Identities=10% Similarity=0.129 Sum_probs=176.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|++..||+|+.||+|++|+... + ..+.. ..|...|.+++|++ |++|
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~--~--------------------------~~~~~-~~~~~~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQ--V--------------------------EVVIK-LEDRSAIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTT--C--------------------------EEEEE-CSSCCCEEEEEEET-TTEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC--c--------------------------EEEEE-cCCCCCEEEEEEcC-CCEE
Confidence 66677788999999999999998320 0 11112 23678999999999 8899
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE--
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-- 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-- 308 (1395)
++|+.|++|+|||+.++. +..+. |.+.|++++| ++++++|++|+.||+|++||+.++.+ ..+.
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~-sp~g~~l~sgs~dg~V~lwd~~~~~~------------~~~~i~ 138 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDT-DASLDWMLIGLQNGSMIVYDIDRDQL------------SSFKLD 138 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEEC-CTTCSEEEEEETTSCEEEEETTTTEE------------EEEEEC
T ss_pred EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcc------------ccceec
Confidence 999999999999999874 44554 7789999999 89999999999999999999997651 0111
Q ss_pred -------EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-ccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 309 -------ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-ERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 309 -------~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
....|...|.+++|+|++..++++|.+++.++|+. ..+.. ..+............ .. .....+|...|+
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~-~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~h~~~V~ 215 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSL-VENEIKQSFIYELPPFAPGGD-FS-EKTNEKRTPKVI 215 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEET-TTTEEEEEECCCBCTTCCCST-TC-CCTTSCBCCCEE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEEC-CCCceEEEEecccCCcCCCcc-cc-cccccccCCCeE
Confidence 12457788999999998765666666666565554 33221 001000000000000 00 001123568899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE--ec---CC-------------CCCCeeEEEEeecCCCCCcEEEEE
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV--LR---PY-------------DGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t--l~---~h-------------~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
+++|+|+| .+|++|+.||+|+|||+++++++.. +. +| .+ .|++|+|++...|++..++++
T Consensus 216 ~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~-~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 216 QSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAA-KISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCC-EEEEEEEEECSSTTEEEEEEE
T ss_pred EEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccC-CeeEEEEEecCCCCCCEEEEe
Confidence 99999998 8999999999999999999988764 31 23 33 799999974434665444444
Q ss_pred ecCC-----CeEEEEEC
Q 039790 443 GPLN-----RELKIWAS 454 (1395)
Q Consensus 443 Gs~D-----g~I~IWDl 454 (1395)
|+.| +.|++|++
T Consensus 294 g~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSTTSSCCCEEEEEE
T ss_pred CCCCCCCCCceEEEEec
Confidence 4354 37888884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=329.57 Aligned_cols=366 Identities=15% Similarity=0.127 Sum_probs=267.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|++..|++++.||.|++|+.. .+..+..+.+|.+.|.+++|++++++|
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYE----------------------------TQVEVRSIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETT----------------------------TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECC----------------------------CCceEEEEecCCCcEEEEEEeCCCCEE
Confidence 5566677888888888888888833 124556778899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++. ...+.+|.+.|++++| ++++.+|++|+.||+|++||+.++. .....+
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~~ 136 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTF 136 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSEEEEEEGGGTS-------------EEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE-eCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEEE
Confidence 999999999999999874 6788999999999999 8999999999999999999998763 144566
Q ss_pred cCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec--C
Q 039790 311 ADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ--W 387 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp--d 387 (1395)
..|...+.+++|+| ++..+++++.++.+.+|+....... ......|...|.+++|+| +
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-------------------FTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-------------------EEEECCCTTCCCEEEECCSTT
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-------------------eEEecCCCCCEEEEEEEECCC
Confidence 67888999999999 5656666666677777765332110 233344558999999999 7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||.|++||++++.++.++.+|.+ .|.+++|+ |+|.+|++++ .||.|++||+.+++
T Consensus 198 ~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~v~vwd~~~~~--------- 261 (814)
T 3mkq_A 198 K-PYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFH----PTLPIIISGS-EDGTLKIWNSSTYK--------- 261 (814)
T ss_dssp C-CEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSEEEEEE-TTSCEEEEETTTCS---------
T ss_pred C-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEc----CCCCEEEEEe-CCCeEEEEECCCCc---------
Confidence 7 7999999999999999999999999999987 99999999 9999999977 99999999998762
Q ss_pred cccEEEEEeccCccccc---------------------------------------------------------------
Q 039790 468 SWKCTQTLELKSSAELR--------------------------------------------------------------- 484 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~--------------------------------------------------------------- 484 (1395)
++..+..+...+..
T Consensus 262 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (814)
T 3mkq_A 262 ---VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE 338 (814)
T ss_dssp ---EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC
T ss_pred ---EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccc
Confidence 22111111110000
Q ss_pred --------------ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 485 --------------LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 485 --------------~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
.........++|+++|.+|++++ |+.+++|++.... . ...+....+.|.... ..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~----~~~~~i~~~~~spdg-~~ 406 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------N----KAFGKCQDFVWGPDS-NS 406 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------E----EEEEECSEEEECTTS-SC
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------c----cCCCceEEEEEeCCC-Ce
Confidence 00111234688888888888877 7888888864311 0 011112223333222 11
Q ss_pred C--cCCCCeEEEEEcCCCceeeecccceEEecCCCCC----eecccCCCceEEEeecCCCCcceeeccCC
Q 039790 551 S--PDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN----AELEKTDSNATRAFDVANPDGSASLESSH 614 (1395)
Q Consensus 551 ~--~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~----l~~~~sd~~v~~iWD~~tg~~~~~l~g~~ 614 (1395)
+ .+.++.|++|+.-.+ +.....|+.+++++ ..+...+++.+++||+.+|..+..+.++.
T Consensus 407 la~~~~~g~v~l~~~~~~-----~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 471 (814)
T 3mkq_A 407 YALIDETGQIKYYKNFKE-----VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA 471 (814)
T ss_dssp EEEECTTCCEEEEETTEE-----CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE
T ss_pred EEEEeCCCcEEEEECCCC-----ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCC
Confidence 2 356788999964332 33344577788874 33333456788899999999988888433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=291.94 Aligned_cols=259 Identities=11% Similarity=0.119 Sum_probs=215.1
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
....+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++++|++++.||+|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEE-cCCCCEEEEEeCCCeEEEEE
Confidence 34568899999999999999999999999999999999887 47788999999999999 88999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-----CeEEEEEcCCCCccccccCCCCCccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-----NRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-----~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+++ .+..+. +...+.+++|++++..+++++.+ +.+.+|+.........+.
T Consensus 103 ~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-------- 159 (369)
T 3zwl_B 103 VSNGQ--------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-------- 159 (369)
T ss_dssp TTTCC--------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--------
T ss_pred CCCCc--------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--------
Confidence 99877 233333 67789999999999988888877 888888775432211100
Q ss_pred ccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 362 VDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
.........+..|.+ .+.+++|++++ .+|++++.||.|++||+++ +..+..+..|.+ .|.+++|+ |++.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~ 232 (369)
T 3zwl_B 160 -KVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFS----PDLTY 232 (369)
T ss_dssp -EECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSS-CEEEEEEC----TTSSE
T ss_pred -ccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-ceeEEEEC----CCCCE
Confidence 001112455566777 99999999998 8999999999999999999 788999999987 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC--------
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN-------- 510 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg-------- 510 (1395)
|++++ .|+.|++||+.++ +++..+... ..+ ..+.|++++.++++++.++
T Consensus 233 l~~~~-~d~~i~v~d~~~~------------~~~~~~~~~-~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 233 FITSS-RDTNSFLVDVSTL------------QVLKKYETD-CPL---------NTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEEEE-TTSEEEEEETTTC------------CEEEEEECS-SCE---------EEEEECSSSSEEEEEECCC--------
T ss_pred EEEec-CCceEEEEECCCC------------ceeeeecCC-CCc---------eeEEecCCCceEEEeecCCCceEEEEe
Confidence 99977 9999999999988 888888733 222 3589999999999999988
Q ss_pred ------eEEEEEcCCC
Q 039790 511 ------AIYAIHMDYG 520 (1395)
Q Consensus 511 ------~I~iWdl~~g 520 (1395)
.|++||+..+
T Consensus 290 ~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFE 305 (369)
T ss_dssp -----CEEEEEETTTC
T ss_pred cCCCcceeEEEecCCC
Confidence 6777777664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=290.01 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=224.6
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.|. +..|+|+|.|++|++|++.... .....+...+.+|...|.+++|+++|++
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-----------------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDE-----------------------TNYGIPQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSS-----------------------SCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCC-----------------------cccceeeEEEeCCCCCEEEEEECCCCCE
Confidence 566665 5789999999999999944210 0112345678899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||.|++|+..... ......+...+..+.| .+++.+|++|+.||.+++||+.... .....
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~s~d~~~~~~d~~~~~-------------~~~~~ 166 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVC-------------KYTVQ 166 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCE-------------EEEEC
T ss_pred EEEEcccccceEEeecccceeeeecCCCCceeEEEE-eecCccceeecCCCeEEEEEeCCCc-------------eEEEE
Confidence 9999999999999999874 5566778888999998 8899999999999999999987643 12233
Q ss_pred ecCCCCCccEEEEeCCCC-eEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 310 LADGDSVHPRVCWHPHKQ-EILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~-~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
...+...+..++|++++. .++++ +.++.+.+|+... +. ....+.+|.+.|++++|+|+
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~-------------------~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CK-------------------LKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TE-------------------EEEEECCCSSCEEEEEECTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-Cc-------------------eeeEecCCCCcEEEEEECCC
Confidence 456778888999988764 34444 4455566665432 21 15667889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||+|+|||+++++++..+.++. .|.+++|+ |++.++ +++ .|+.|+|||++++
T Consensus 227 ~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~----~~~~~~-~~~-~d~~i~iwd~~~~---------- 287 (340)
T 4aow_A 227 G-SLCASGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFS----PNRYWL-CAA-TGPSIKIWDLEGK---------- 287 (340)
T ss_dssp S-SEEEEEETTCEEEEEETTTTEEEEEEECSS--CEEEEEEC----SSSSEE-EEE-ETTEEEEEETTTT----------
T ss_pred C-CEEEEEeCCCeEEEEEeccCceeeeecCCc--eEEeeecC----CCCcee-ecc-CCCEEEEEECCCC----------
Confidence 8 899999999999999999999999998775 69999998 777655 445 7999999999887
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++..+..+............+..++|+++|.+|++|+.||.|+|||+.+|.
T Consensus 288 --~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 288 --IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred --eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6666665432211111111223468999999999999999999999999874
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=304.26 Aligned_cols=315 Identities=14% Similarity=0.181 Sum_probs=242.6
Q ss_pred eCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEEC----CCCc-------eEEecc----------CCCCeEEEEEeeCCC
Q 039790 213 ISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNI----ITAL-------RSLLRG----------HTQRVTDMAFFAEDV 270 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~----~~~~-------~~~l~~----------H~~~V~slaf~s~dg 270 (1395)
..|.+.|++++|+|+|+ +||+|+.||.|+|||+ .++. ...+.. |.+.|++++| ++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW-SHDG 120 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE-CTTS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE-cCCC
Confidence 44668999999999999 9999999999999999 7765 233333 6889999999 8999
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.+|++|+.||.|++|| .++. .+..+..|...+.+++|++++..+++++.++.+.+|+......
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 183 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGA--------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-- 183 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSC--------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE--
T ss_pred CEEEEEeCCCeEEEEe-CCCC--------------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--
Confidence 9999999999999999 4444 3455667889999999999999888888888888888743221
Q ss_pred cccCCCCCccCccccccceEEEcccCCC---------------eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGE---------------ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~---------------V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
+..+..|... +.+++|++++ .+++++.||.|++||+++++++..+
T Consensus 184 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 184 ------------------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKL 243 (425)
T ss_dssp ------------------EEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEE
T ss_pred ------------------EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeee
Confidence 2333334443 9999999975 7899999999999999999999999
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
.+|.+ .|.+++|+ |++++|++++ .|+.|++||+.++ +++..+..|...+. .+.
T Consensus 244 ~~~~~-~i~~~~~~----~~~~~l~~~~-~d~~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~ 296 (425)
T 1r5m_A 244 IGHHG-PISVLEFN----DTNKLLLSAS-DDGTLRIWHGGNG------------NSQNCFYGHSQSIV---------SAS 296 (425)
T ss_dssp CCCSS-CEEEEEEE----TTTTEEEEEE-TTSCEEEECSSSB------------SCSEEECCCSSCEE---------EEE
T ss_pred ccCCC-ceEEEEEC----CCCCEEEEEc-CCCEEEEEECCCC------------ccceEecCCCccEE---------EEE
Confidence 99987 99999999 9999999977 9999999999887 77888887776543 489
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCCC-CcC--cCCCCeEEEEEcCCCc----
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTTT-DAS--PDGEHIVQIYCVQTQA---- 567 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~---- 567 (1395)
|++++ +|++++.|+.|++||+..+. .+..+..+ .++..+..... ..+ .+.|+.|+||++.++.
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNT--------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTE--------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCc--------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 99999 99999999999999997753 22333322 34444433330 222 3578999999999876
Q ss_pred ----------------e-eeeccc----ceEEecCCCCC--eecccCCCceEEEeecC
Q 039790 568 ----------------I-QQYALD----LSQCLPPPLEN--AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 568 ----------------i-~~~~~~----~~~cl~~s~d~--l~~~~sd~~v~~iWD~~ 602 (1395)
+ ..+..+ ...++.+++++ +++++ +++.+++||+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIP 424 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeec
Confidence 3 333322 67788888776 55555 45667799985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=327.18 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=226.6
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.++++ +..|++++.|++|++|++...+ . ........+.+|...|.+++|+++|++
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~-~----------------------~~~~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDD-K----------------------AYGVAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCST-T----------------------CSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCC-c----------------------ccccccceecCCCCcEEEEEECCCCCE
Confidence 445544 3689999999999999943110 0 011334678899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++ ....+.+|.+.|.+++| ++++.+|++|+.||+|+|||+.... ...+
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~s~D~~i~iwd~~~~~--------------~~~~ 509 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF-SLDNRQIVSASRDRTIKLWNTLGEC--------------KYTI 509 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCE--------------EEEE
T ss_pred EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE-eCCCCEEEEEeCCCEEEEEECCCCc--------------ceee
Confidence 999999999999999988 46788999999999999 8999999999999999999986432 1122
Q ss_pred e---cCCCCCccEEEEeCCC--CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 310 L---ADGDSVHPRVCWHPHK--QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 310 ~---~~~~~~v~~v~~sp~~--~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
. ..|...+.+++|+|++ ..+++++.++.+.+|+.... . ....+.+|.+.|++++|
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~-------------------~~~~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-K-------------------LRSTLAGHTGYVSTVAV 569 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-C-------------------EEEEECCCSSCEEEEEE
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-c-------------------EEEEEcCCCCCEEEEEE
Confidence 1 3567789999999987 34566666677777765331 1 15677889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
+|++ .+|++|+.||+|+|||+++++++..+..+. .|.+++|+ |++.+|+++ .|+.|+|||+.++
T Consensus 570 spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~s----p~~~~l~~~--~~~~i~iwd~~~~------- 633 (694)
T 3dm0_A 570 SPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALCFS----PNRYWLCAA--TEHGIKIWDLESK------- 633 (694)
T ss_dssp CTTS-SEEEEEETTSBCEEEETTTTEEEECCBCSS--CEEEEEEC----SSSSEEEEE--ETTEEEEEETTTT-------
T ss_pred eCCC-CEEEEEeCCCeEEEEECCCCceEEEecCCC--cEEEEEEc----CCCcEEEEE--cCCCEEEEECCCC-------
Confidence 9998 899999999999999999999998887664 79999999 999888764 4778999999988
Q ss_pred CcccccEEEEEeccCcccc----------cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 465 DIESWKCTQTLELKSSAEL----------RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~----------~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.++..+..+..... ......++..++|+++|.+|++|+.||.|+||++.
T Consensus 634 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 634 -----SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -----CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 77777765432110 00111235578999999999999999999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=292.77 Aligned_cols=289 Identities=13% Similarity=0.136 Sum_probs=237.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..|++++.|+.|++|++. ....+..+.+|...|.+++|++++++|
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSL----------------------------NGERLGTLDGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETT----------------------------TCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCC----------------------------CchhhhhhhhcCCcEEEEEEcCCCCEE
Confidence 6667777889999999999999843 113456677899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||.|+|||+.++.......|...|.+++| ++++.+|++++.+ |.|++||+..+.............+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-- 166 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI-- 166 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS--
T ss_pred EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee--
Confidence 9999999999999998854433338999999999 8999999999999 9999999998763332221111111
Q ss_pred EEEecCCCC--CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 307 IQILADGDS--VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~--~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
.....+.. .+.+++|++++..+++++.++.+.+|+...... ....+..|...|.+++|
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 167 -HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------------YVDSIDLHEKSISDMQF 226 (369)
T ss_dssp -EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-------------------EEEEEECCSSCEEEEEE
T ss_pred -eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-------------------eEEEEecCCCceeEEEE
Confidence 12223333 788999999999888888888888887644222 15667789999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--------------eEE
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--------------ELK 450 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--------------~I~ 450 (1395)
+|++ .+|++++.||.|++||+++++++..+. +.. .+.+++|+ |+++++++++ .++ .|+
T Consensus 227 ~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~~----~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 227 SPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDC-PLNTAVIT----PLKEFIILGG-GQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp CTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEEC----SSSSEEEEEE-CCC-------------CEEE
T ss_pred CCCC-CEEEEecCCceEEEEECCCCceeeeec-CCC-CceeEEec----CCCceEEEee-cCCCceEEEEecCCCcceeE
Confidence 9998 899999999999999999999999998 444 89999999 9999999987 666 899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+||+.++ +++..+..|...+. .++|+++|.+|++++.||.|++|++..+
T Consensus 299 ~~d~~~~------------~~~~~~~~~~~~v~---------~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 299 FYHKIFE------------EEIGRVQGHFGPLN---------TVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEETTTC------------CEEEEEECCSSCEE---------EEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEecCCC------------cchhheecccCcEE---------EEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999888 88999998887654 4999999999999999999999999764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=316.79 Aligned_cols=405 Identities=12% Similarity=0.057 Sum_probs=275.5
Q ss_pred ccCCC--CCCeEEeecCCCCEEEEeCcCC------CCCee----eeCceEEEEEeccCCCccCcc--------------c
Q 039790 152 PTLPP--PSDSTVVIPSAPPVRLRSSKVP------KGRHL----IGNHSVYDIDVRLDGEVQPQL--------------E 205 (1395)
Q Consensus 152 ~s~p~--p~~~Las~s~Dg~Vrlwd~~sp------~Gr~L----~G~~~v~~v~~~~~G~~~~~~--------------~ 205 (1395)
+.+.+ ++..|++++.||.|++|++... .++.+ .....+..+.+.++|..+... .
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~ 149 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 149 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC
Confidence 56677 8899999999999999996422 22333 234567777777766543211 2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC-ceEEeccCCC---CeEEEEEeeCC-CCEEEEEECC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA-LRSLLRGHTQ---RVTDMAFFAED-VHLLASASVD 279 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~-~~~~l~~H~~---~V~slaf~s~d-g~~LaSgs~D 279 (1395)
...+..+.+|...|.+++|+++++ +|++|+.||.|++||+.++ ....+.+|.. .|.+++| +++ +++|++|+.|
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-SPDSGEFVITVGSD 228 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE-CSTTCCEEEEEETT
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE-CCCCCCEEEEEeCC
Confidence 346678889999999999999998 8999999999999999887 4678889999 9999999 888 9999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEe-c---CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQIL-A---DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~---~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
|.|++||+.+++ .+..+ . .|...+.+++|+ ++..+++++.++.+.+|+......
T Consensus 229 g~i~vwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~------- 286 (615)
T 1pgu_A 229 RKISCFDGKSGE--------------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC------- 286 (615)
T ss_dssp CCEEEEETTTCC--------------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-------
T ss_pred CeEEEEECCCCC--------------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-------
Confidence 999999999887 34444 4 788899999999 887777777777787777643211
Q ss_pred CCCccCccccccceEEEccc----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 356 EPLKCPVDELINGVQLVGKH----DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
+..+..+ ...+.++.|+ ++ .+|++++.||.|++||+.+++++..+.+|.+ .|++++| +.
T Consensus 287 -------------~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~ 349 (615)
T 1pgu_A 287 -------------VQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP 349 (615)
T ss_dssp -------------EEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT
T ss_pred -------------EEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC
Confidence 3334334 4678899986 55 7999999999999999999999989888765 6666665 21
Q ss_pred --------------------C---------CCCCcEEEEEecCCCeEEEEECCCCCC-----------------------
Q 039790 432 --------------------P---------HPQHIVLITGGPLNRELKIWASAEEEG----------------------- 459 (1395)
Q Consensus 432 --------------------~---------~pdg~~L~s~Gs~Dg~I~IWDl~tg~~----------------------- 459 (1395)
. .+++.+|++++ .|+.|++||+.+++.
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 0 02355666655 777777777654210
Q ss_pred ---------CC-------------------CCCCcccccEEEEEeccCccc--c-cccccccceEEEEeCCCCEEEEEeC
Q 039790 460 ---------WL-------------------LPSDIESWKCTQTLELKSSAE--L-RLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 460 ---------~~-------------------~~~~~~~~~~l~tl~~h~~~i--~-~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.. +.........+..++...... . ..........++|+++|.+|++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 00 000000011122222111100 0 0011122346999999999999999
Q ss_pred CCeEEEEEcCCCCCCCCcceeeeee-eeccccEEEEec----------CCCCcC--cCCCCeEEEEEcCCC-ce-ee--e
Q 039790 509 KNAIYAIHMDYGPNPASTRMDYIAE-FTVTMPILSLTG----------TTTDAS--PDGEHIVQIYCVQTQ-AI-QQ--Y 571 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~~~~~~~i~~-f~~~~~ils~~~----------~~~d~~--~s~dg~V~lWdv~t~-~i-~~--~ 571 (1395)
|+.|++|++..++. +..+.. +......+.|.. .. ..+ ++.|+.|+||++.++ .. .. .
T Consensus 509 dg~i~iw~~~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 509 MGKILLYDLQSREV-----KTSRWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp TSCEEEEETTTTEE-----EECCSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred CCeEEEeeCCCCcc-----eeEeecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 99999999987541 111211 222222333433 22 222 357899999999996 33 32 3
Q ss_pred cccceEEecCCCCC-eecccCCCceEEEeecCCC
Q 039790 572 ALDLSQCLPPPLEN-AELEKTDSNATRAFDVANP 604 (1395)
Q Consensus 572 ~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~tg 604 (1395)
|.....|+.|++++ +++++ +++.+++||+.++
T Consensus 583 h~~~v~~l~~s~~~~l~s~~-~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 583 HKDGVNNLLWETPSTLVSSG-ADACIKRWNVVLE 615 (615)
T ss_dssp STTCEEEEEEEETTEEEEEE-TTSCEEEEEEC--
T ss_pred CccceEEEEEcCCCCeEEec-CCceEEEEeeecC
Confidence 45557777777765 55555 4577789998753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=302.16 Aligned_cols=282 Identities=16% Similarity=0.234 Sum_probs=231.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++.. ..|++| .|++|++||..+ |+. ..+..+.+|...|++++|+++|++|
T Consensus 111 l~wS~~-n~lAvg-ld~tV~lWd~~t--g~~------------------------~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 111 VDWSSG-NVLAVA-LDNSVYLWSASS--GDI------------------------LQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTT--CCE------------------------EEEEECCSTTCCEEEEEECTTSSEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCC--CCE------------------------EEEEEecCCCCcEEEEEECCCCCEE
Confidence 444432 455554 589999999441 111 1123445788899999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
|+|+.||.|+|||+.++ .+..+.+|...|.+++| ++.+|++|+.|+.+++||..... ..+..+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~-------------~~~~~~ 226 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAE-------------HHVATL 226 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEE
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecccc-------------eeeEEe
Confidence 99999999999999998 47789999999999988 57899999999999999998754 134566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+..+.|++++..+++++.++.+.+|+....... ...+.....|...|.+++|+|++..
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------------~~~~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------WVPLQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----------------SCCSEEECCCSSCEEEEEECTTCTT
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeecccccc----------------ceeeeeecccCCceeeeeeCCCccc
Confidence 778889999999999998888888888888876543211 1114667789999999999999877
Q ss_pred EEEEE--eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASA--SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSg--s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+++++ +.|++|+|||++++.++..+..|. .+.++.|+ +++..|+++ |+.|+.|+|||+.++
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~----~~~~~lv~~sg~~d~~I~iwd~~~~---------- 354 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS----PHYKELISGHGFAQNQLVIWKYPTM---------- 354 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEE----TTTTEEEEEECTTTCCEEEEETTTC----------
T ss_pred EEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeec----CCCCeEEEEEecCCCEEEEEECCCC----------
Confidence 87765 479999999999999999998875 69999999 888888775 447999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++.+|.+|.+.+.. ++|++||.+|++|+.|++|+|||+...
T Consensus 355 --~~v~~l~gH~~~V~~---------l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 355 --AKVAELKGHTSRVLS---------LTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp --CEEEEECCCSSCEEE---------EEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred --cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999877654 999999999999999999999998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=340.24 Aligned_cols=393 Identities=10% Similarity=0.026 Sum_probs=263.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+ +..|++++.|++|++||+.. | ..+..+. |.+.|++++|+|++++|
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~--~--------------------------~~~~~~~-~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYS--Q--------------------------KVLTTVF-VPGKITSIDTDASLDWM 113 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTT--C--------------------------SEEEEEE-CSSCEEEEECCTTCSEE
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCC--C--------------------------cEEEEEc-CCCCEEEEEECCCCCEE
Confidence 44455 56799999999999999541 1 2233443 56789999999999999
Q ss_pred EEEEcCCeEEEEECCCCce------------EEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 232 CYGLKLGNIRILNIITALR------------SLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~------------~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++|+.||.|++||+.++.. ..+.+|.+.|++|+| ++ ++.+|++|+.||+| +||+++++
T Consensus 114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~-sp~~~~~l~~g~~dg~v-lWd~~~~~------- 184 (902)
T 2oaj_A 114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW-NPRDIGTVLISYEYVTL-TYSLVENE------- 184 (902)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE-ETTEEEEEEEECSSCEE-EEETTTTE-------
T ss_pred EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE-ccCCCCEEEEEeCCCcE-EEECCCCc-------
Confidence 9999999999999998754 234779999999999 66 46799999999999 99999876
Q ss_pred cccceEEEEEEecC------------------CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc--cc-----c
Q 039790 299 ILGKIVVAIQILAD------------------GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE--RF-----S 353 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~------------------~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~--~~-----s 353 (1395)
.+..+.. |...|.+++|+|++..+++++.++.+.+|+........ .+ .
T Consensus 185 -------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 185 -------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp -------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred -------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 2222222 24679999999999888888888888888764421100 00 0
Q ss_pred ------------CCCCCccCcc-----------------c-c--ccceE-----------------------------EE
Q 039790 354 ------------AEEPLKCPVD-----------------E-L--INGVQ-----------------------------LV 372 (1395)
Q Consensus 354 ------------~~~~~~~~~~-----------------~-~--~~~~~-----------------------------~l 372 (1395)
....+....| + . ...+. .+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 0000000001 0 0 00111 11
Q ss_pred c-ccCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCCCCceeEE-------e--------------------
Q 039790 373 G-KHDGEITELSMCQW---------LTTRLASASLDGTVKIWDDRKSTPLAV-------L-------------------- 415 (1395)
Q Consensus 373 ~-~h~~~V~slafspd---------g~~~LaSgs~Dg~IrIWDl~sg~~l~t-------l-------------------- 415 (1395)
. .|.+.|.++.|.++ ++..+++++.||.|++||+.+|..+.. +
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 1 35667888887652 224788899999999999987753322 2
Q ss_pred --------------cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-----
Q 039790 416 --------------RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE----- 476 (1395)
Q Consensus 416 --------------~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~----- 476 (1395)
.+|.. .+.+|+|+ |++++|++++ .|++||+||+.++.- .....+ .+.
T Consensus 418 ~~~~~~~~~~~~~l~G~~~-~v~sv~~s----pdg~~laSgs-~DgtVrlWd~~~g~~-------~~~~~~-~~~l~~~~ 483 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVR-TKRQKLPA----EYGTAFITGH-SNGSVRIYDASHGDI-------QDNASF-EVNLSRTL 483 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBC-CCCCCCCC----SEEEEEEEEE-TTSEEEEEESSCCTT-------TTTBCE-EEEHHHHT
T ss_pred HHHHhcccCCCCcccCCcC-CCCccccc----ccCcEEEEec-CCCcEEEEECCCccc-------cCCceE-Eeechhhc
Confidence 23333 44455555 8899999976 999999999987610 000111 111
Q ss_pred --ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC--------C---------------------
Q 039790 477 --LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA--------S--------------------- 525 (1395)
Q Consensus 477 --~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~--------~--------------------- 525 (1395)
+|... +..++|++||.+||+|+.||+|+||++..++... .
T Consensus 484 ~~~h~~~---------V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 484 NKAKELA---------VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp TCSSSCC---------EEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred CCCCCCc---------eeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 33333 3469999999999999999999999998763200 0
Q ss_pred --------cceeeeeeeecc-ccEEEEecCCCCcC---cCCCCeEEEEEcCCCceee---------ecccceEEecCC--
Q 039790 526 --------TRMDYIAEFTVT-MPILSLTGTTTDAS---PDGEHIVQIYCVQTQAIQQ---------YALDLSQCLPPP-- 582 (1395)
Q Consensus 526 --------~~~~~i~~f~~~-~~ils~~~~~~d~~---~s~dg~V~lWdv~t~~i~~---------~~~~~~~cl~~s-- 582 (1395)
..+..+..+..+ ..+.++..+. +++ ++.|++|+|||+.++.+.. .|...+.|+.|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIM 633 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecC-CcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEE
Confidence 001223334333 4555555554 333 4679999999999987642 344558899998
Q ss_pred ---CCC----eecccCCCceEEEeec---CCCCcceeeccCC
Q 039790 583 ---LEN----AELEKTDSNATRAFDV---ANPDGSASLESSH 614 (1395)
Q Consensus 583 ---~d~----l~~~~sd~~v~~iWD~---~tg~~~~~l~g~~ 614 (1395)
+|+ ..++++.++.+++||+ .+|++...|.|+.
T Consensus 634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp ECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred ecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 873 3344445688889999 8999999998654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=301.47 Aligned_cols=335 Identities=16% Similarity=0.155 Sum_probs=248.6
Q ss_pred ceeeeeCCCCCE-EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 208 PITKYISDPGLV-LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 208 ~i~~l~~h~~~V-~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
....+.+|...| .++.| ++++|++|+.||.|+|||+.++ .+..+.+|.+.|++++| ++++ +|++|+.||+|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~-~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEE-cCCC-EEEEEeCCCCEEEE
Confidence 446788998875 55544 6789999999999999999988 47788999999999999 7766 99999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc-
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV- 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~- 362 (1395)
|+.++. .+..+..|...+.+++|++ ++..+++++.++.+.+|+....................
T Consensus 189 d~~~~~--------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 189 DIKKGC--------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTTTE--------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ECCCCc--------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 999876 5566778899999999985 55666777777777777765432211111110000000
Q ss_pred --cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 --DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 --~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.........+.+|...|.++. +++ .+|++|+.||.|++||+++++++..+.+|.+ .|++++|+ |++.+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~ 326 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYD----HERKRCI 326 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEE----TTTTEEE
T ss_pred ccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEc----CCCCEEE
Confidence 000111567788999999884 555 7999999999999999999999999999987 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .||.|++||+.++ +++.++.+|...+. .+.|+ +.+|++++.||.|++||+..+
T Consensus 327 sg~-~dg~i~vwd~~~~------------~~~~~~~~h~~~v~---------~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 327 SAS-MDTTIRIWDLENG------------ELMYTLQGHTALVG---------LLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEE-TTSCEEEEETTTT------------EEEEEECCCSSCEE---------EEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEe-CCCcEEEEECCCC------------cEEEEEeCCCCcEE---------EEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 977 9999999999988 99999998887653 36665 789999999999999999874
Q ss_pred CCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCceeee----cccceEEecCCCCCeecccCCCce
Q 039790 521 PNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQQY----ALDLSQCLPPPLENAELEKTDSNA 595 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~~~----~~~~~~cl~~s~d~l~~~~sd~~v 595 (1395)
.. . ...........+.|.... ..+ ..+|+.|+|||+.++++... +.....++.++.+.+.++..++++
T Consensus 383 ~~----~--~~~~~~~~~~~~~~~~~~-~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 383 SR----K--FSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 455 (464)
T ss_dssp CE----E--EEEECTTCCCEEEEEECS-SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTE
T ss_pred ce----e--eeecCCCCccEEEEEeCC-CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCe
Confidence 31 1 111112223334444443 222 34589999999999987642 334467777877677776666666
Q ss_pred EEEe
Q 039790 596 TRAF 599 (1395)
Q Consensus 596 ~~iW 599 (1395)
+.+|
T Consensus 456 ~~i~ 459 (464)
T 3v7d_B 456 SFLE 459 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=341.90 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=260.5
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
....+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ .+..+.+|.+.|.+++| ++++++|++|+.||+|+|||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEE
Confidence 34567899999999999999999999999999999999987 47789999999999999 89999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+.+++ .+..+..|...+.+++|++++. .++++ +.++.+.+|+... +.
T Consensus 686 ~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~---------------- 734 (1249)
T 3sfz_A 686 SATGK--------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KE---------------- 734 (1249)
T ss_dssp TTTCC--------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SS----------------
T ss_pred CCCCc--------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cc----------------
Confidence 99887 4556678889999999999643 34444 4455666665532 22
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec----------------------------
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---------------------------- 416 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---------------------------- 416 (1395)
....+.+|.+.|++++|+|++ .+|++|+.||+|++||++++.....+.
T Consensus 735 ---~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 735 ---CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 156778899999999999998 899999999999999988775544332
Q ss_pred ---------------------------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 417 ---------------------------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 417 ---------------------------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
+|.+ .|.+++|+ |++.++++++ .|+.|++||+.++
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~s----p~~~~l~~~~-~dg~v~vwd~~~~------------ 872 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFS----PYDHLAVIAL-SQYCVELWNIDSR------------ 872 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEEC----SSTTEEEEEC-SSSCEEEEETTTT------------
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEc----CCCCEEEEEe-CCCeEEEEEcCCC------------
Confidence 5665 89999999 9999999876 9999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc-----------------------
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST----------------------- 526 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~----------------------- 526 (1395)
.++..+.+|...+. .++|+++|.+|++++.|+.|++|++..+......
T Consensus 873 ~~~~~~~~h~~~v~---------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 873 LKVADCRGHLSWVH---------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEEEECCCSSCEE---------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred ceeeecCCCccceE---------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 88888888876654 4888888888888888888888886531100000
Q ss_pred -----------c--------e-----------------------------eeeeeeecc---ccEEEEecCCCCcC--cC
Q 039790 527 -----------R--------M-----------------------------DYIAEFTVT---MPILSLTGTTTDAS--PD 553 (1395)
Q Consensus 527 -----------~--------~-----------------------------~~i~~f~~~---~~ils~~~~~~d~~--~s 553 (1395)
. + ..+..+..+ ...+.|.... ..+ .+
T Consensus 944 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~ 1022 (1249)
T 3sfz_A 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSS 1022 (1249)
T ss_dssp SSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEEC
T ss_pred cceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEc
Confidence 0 0 000001111 1112222221 112 35
Q ss_pred CCCeEEEEEcCCCceee--ecccceEEecCCCCCeecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 554 GEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 554 ~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
.|+.|++|++.++.... .+.....|+.+.+++..+..+.++.+++||+.++.+...+.++.+
T Consensus 1023 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 78999999999987643 344556777777777444444567888999999999999985544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=300.79 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=228.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC----C---CEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN----R---NYI 231 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd----g---~~L 231 (1395)
..|++++.||.|++|++.... . ......+..+.+|...|.+++|+++ | ++|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~--------------------~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD--------------------N--ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT--------------------T--CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcc--------------------c--ccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 799999999999999954210 0 0112356777899999999999999 9 999
Q ss_pred EEEEcCCeEEEEECCCCc------eEEeccC-----CCCeEEEEEee----CCCCE-EEEEECCCcEEEEECCC------
Q 039790 232 CYGLKLGNIRILNIITAL------RSLLRGH-----TQRVTDMAFFA----EDVHL-LASASVDGRFFIWNITE------ 289 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~------~~~l~~H-----~~~V~slaf~s----~dg~~-LaSgs~DgtV~IWdl~t------ 289 (1395)
++|+.||.|++||+.++. ...+.+| ...|.+++| + +++.+ |++|+.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW-GASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE-ECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEE-eeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 999999999999999875 7888889 599999999 7 88999 99999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
+......+ .......+.....+...+.+++|++++ .+++++.++.+.+|+... +. .+
T Consensus 164 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~-------------------~~ 220 (397)
T 1sq9_A 164 SLTLNWSP--TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LR-------------------PL 220 (397)
T ss_dssp HTTTCCCC--EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TE-------------------EE
T ss_pred cceeeccC--cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-Cc-------------------ee
Confidence 55322110 000000011114577889999999999 666666667777776543 11 14
Q ss_pred EEEcc---c---CCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecC-------------CCCCCeeEEE
Q 039790 370 QLVGK---H---DGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRP-------------YDGHPVNCVT 427 (1395)
Q Consensus 370 ~~l~~---h---~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~-------------h~~~~V~sV~ 427 (1395)
..+.. | ...|++++|+|++ .+|++++.| |.|++||+++++++..+.+ |.+ .|.+++
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred EEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 56666 8 9999999999998 899999999 9999999999999999998 887 999999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe------cc---------------Cccccccc
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE------LK---------------SSAELRLE 486 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~------~h---------------~~~i~~~~ 486 (1395)
|+ |++++|++++ .|+.|+|||+.++ +++.++. .| ...
T Consensus 299 ~~----~~~~~l~~~~-~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 356 (397)
T 1sq9_A 299 FN----DSGETLCSAG-WDGKLRFWDVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG----- 356 (397)
T ss_dssp EC----SSSSEEEEEE-TTSEEEEEETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----
T ss_pred EC----CCCCEEEEEe-CCCeEEEEEcCCC------------ceeEEEecccCcccchhhhhccccccccccCCc-----
Confidence 99 9999999977 9999999999988 8999998 55 333
Q ss_pred ccccceEEEEeCCC----------CEEEEEeCCCeEEEEEcCCC
Q 039790 487 DAFFNQVVALNRAG----------LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg----------~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+..++|+++| .+|++++.||.|++|++.+|
T Consensus 357 ----v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 357 ----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ----EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ----eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 3369999998 79999999999999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=294.69 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=213.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..|.+.|++++|++++++|++|+.||.|+|||+.++ ....+.+|...|.+++| ++++++|++|+.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEE-ETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEE-eCCCCEEEEEcCCCeEEEEECC
Confidence 4568899999999999999999999999999999998 67788999999999999 8899999999999999999998
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ . ........+...+.+++|++++..+++++.++.+.+|+........ ..
T Consensus 83 ~~~-----------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----------------~~ 134 (372)
T 1k8k_C 83 GRT-----------W-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----------------VC 134 (372)
T ss_dssp TTE-----------E-EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----------------EE
T ss_pred CCe-----------e-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce----------------ee
Confidence 764 1 1222345677889999999999888888888888888765432100 00
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC------------------CCCceeEEecCCCCCCeeEEEEee
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD------------------RKSTPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl------------------~sg~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
.....+|...|++++|+|++ .+|++|+.||.|++||+ ..+.++..+.+|.+ .|.+++|+
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~- 211 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFS- 211 (372)
T ss_dssp EEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEEC-
T ss_pred eeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEEC-
Confidence 23346789999999999998 89999999999999995 46789999999987 99999999
Q ss_pred cCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 431 GPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
|++.+|++++ .|+.|++||++++ +++..+..|...+. .++|+++|.+|++| .|+
T Consensus 212 ---~~~~~l~~~~-~d~~i~i~d~~~~------------~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 212 ---ANGSRVAWVS-HDSTVCLADADKK------------MAVATLASETLPLL---------AVTFITESSLVAAG-HDC 265 (372)
T ss_dssp ---SSSSEEEEEE-TTTEEEEEEGGGT------------TEEEEEECSSCCEE---------EEEEEETTEEEEEE-TTS
T ss_pred ---CCCCEEEEEe-CCCEEEEEECCCC------------ceeEEEccCCCCeE---------EEEEecCCCEEEEE-eCC
Confidence 9999999977 9999999999988 89999988876543 48999999998888 899
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.|++|++..
T Consensus 266 ~i~i~~~~~ 274 (372)
T 1k8k_C 266 FPVLFTYDS 274 (372)
T ss_dssp SCEEEEEET
T ss_pred eEEEEEccC
Confidence 999999987
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=303.44 Aligned_cols=295 Identities=13% Similarity=0.138 Sum_probs=219.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++.+..|++++.|+.|++|+.... .....+..| ..+....|++++++|
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~----------------------------~~~~~~~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIR----------------------------DGSKMLKRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSE----------------------------ETTTTSCSC-CEEEEEEECSSSCEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEeccc----------------------------ceeeEEecC-CceEEEEEecCCCEE
Confidence 455667789999999999999994310 111223334 445555789999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++. ...+.+|.+.|++++| ++++++|++|+.||+|++||+.+++ .+..+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~d~~i~iwd~~~~~--------------~~~~~ 177 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKF-FPSGEALISSSQDMQLKIWSVKDGS--------------NPRTL 177 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCC--------------CCEEE
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCc--------------CceEE
Confidence 999999999999999885 4556799999999999 8999999999999999999999877 23445
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE--------EcccCCCeEEE
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL--------VGKHDGEITEL 382 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------l~~h~~~V~sl 382 (1395)
..|...+.+++|+|++..+++++.++.+.+|+.........+...... ......+.. ...|...++++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP----HDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT----TCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC----CCCccEEEEecCCcceeeecccCcccce
Confidence 678899999999999998888888888888877543221111100000 000000000 11234556666
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+|+|++ .+|++|+.||.|++||++++..+..+.. |.. .|++++|+ |++. +|++++ .||.|++||+++++
T Consensus 254 ~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~l~~g~-~dg~i~vwd~~~~~-- 324 (420)
T 3vl1_A 254 EFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVD----GNNANYIYAGY-ENGMLAQWDLRSPE-- 324 (420)
T ss_dssp CSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSS-CEEEEEEC----SSCTTEEEEEE-TTSEEEEEETTCTT--
T ss_pred EEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCC-CceeEEEe----CCCCCEEEEEe-CCCeEEEEEcCCCc--
Confidence 778888 8999999999999999999988887764 665 99999999 9998 888866 99999999998861
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++..+..|.... ...+.+ +++.+|++++.|+.|++|++..+.
T Consensus 325 ---------~~~~~~~~~~~~~--------v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 325 ---------CPVGEFLINEGTP--------INNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ---------SCSEEEEESTTSC--------EEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred ---------CchhhhhccCCCC--------ceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 2366777644322 123544 578899999999999999998753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=311.83 Aligned_cols=354 Identities=11% Similarity=0.137 Sum_probs=268.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCC-EEEEEEec--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGL-VLGRQIAV--NR 228 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~-V~~va~Sp--dg 228 (1395)
+.+++++..|++++ ++.|++|++.... .....+..+.+|.+. |.+++|+| ++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~------------------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~ 78 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGD------------------------SKVPPVVQFTGHGSSVVTTVKFSPIKGS 78 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSC------------------------CSSCSEEEECTTTTSCEEEEEECSSTTC
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCC------------------------CccccceEEecCCCceEEEEEECcCCCC
Confidence 55566777888877 7788888843100 001356678899999 99999999 99
Q ss_pred CEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCC
Q 039790 229 NYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEED 295 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~ 295 (1395)
++|++|+.||.|+|||+.++ ....+.+|...|.+++| ++++.+|++++.| +.|++|| .+.
T Consensus 79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~~~~~~v~~~d--~~~---- 151 (615)
T 1pgu_A 79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DFEGRRLCVVGEGRDNFGVFISWD--SGN---- 151 (615)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE-CTTSSEEEEEECCSSCSEEEEETT--TCC----
T ss_pred CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE-eCCCCEEEEeccCCCCccEEEEEE--CCC----
Confidence 99999999999999999643 45678889999999999 8999999999998 7899998 333
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+..|...+.+++|+|++.. +++++.++.+.+|+.. .+. ....+.+
T Consensus 152 ----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~-------------------~~~~~~~ 201 (615)
T 1pgu_A 152 ----------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFK-------------------FSASDRT 201 (615)
T ss_dssp ----------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBE-------------------EEEEECS
T ss_pred ----------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccc-------------------eeeeecc
Confidence 45566788899999999999985 4444455556666532 221 1566778
Q ss_pred cCC---CeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceeEEe-c---CCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 375 HDG---EITELSMCQW-LTTRLASASLDGTVKIWDDRKSTPLAVL-R---PYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 375 h~~---~V~slafspd-g~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
|.. .|++++|+|+ + .+|++++.||.|++||+++++++..+ . +|.+ .|.+++|+ ++.+|++++ .|
T Consensus 202 ~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-----~~~~l~~~~-~d 273 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-----DSQKFATVG-AD 273 (615)
T ss_dssp SSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-----SSSEEEEEE-TT
T ss_pred cCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-----CCCEEEEEc-CC
Confidence 999 9999999999 7 89999999999999999999999999 6 8887 99999994 788999877 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.|++||+.++ +++..+..+...... ....+.|+ ++.+|++++.|+.|++||+..+.
T Consensus 274 ~~i~~wd~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~----- 330 (615)
T 1pgu_A 274 ATIRVWDVTTS------------KCVQKWTLDKQQLGN-----QQVGVVAT-GNGRIISLSLDGTLNFYELGHDE----- 330 (615)
T ss_dssp SEEEEEETTTT------------EEEEEEECCTTCGGG-----CEEEEEEE-ETTEEEEEETTSCEEEEETTEEE-----
T ss_pred CcEEEEECCCC------------cEEEEEcCCCCcccC-----ceeEEEeC-CCCeEEEEECCCCEEEEECCCCc-----
Confidence 99999999988 889888877422211 12245665 89999999999999999987632
Q ss_pred ceeeeeeeecc-ccEEEEecCCCCcC-cCCCCeEEEEEcCCCceeeecccceEEecCCCCC-eecccCCCceEEEeecCC
Q 039790 527 RMDYIAEFTVT-MPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN-AELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 527 ~~~~i~~f~~~-~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~t 603 (1395)
.+..+..+ ..+..+.. . +.+ .+.|+.|++|++. .+...+.....|+.+..+. +..++ .++.+++||+.+
T Consensus 331 ---~~~~~~~~~~~v~~~~~-~-~l~~~~~dg~i~~w~~~--~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~ 402 (615)
T 1pgu_A 331 ---VLKTISGHNKGITALTV-N-PLISGSYDGRIMEWSSS--SMHQDHSNLIVSLDNSKAQEYSSIS-WDDTLKVNGITK 402 (615)
T ss_dssp ---EEEEECCCSSCEEEEET-T-TTEEEETTSCEEETTTT--EEECCCCSCEEEEECCSTTCCEEEE-TTTEEEETTEEE
T ss_pred ---EEEEEeCCCCCEEEEEe-c-CcEEECCCCeEEEEEch--hhcCcccCceEEEEECCCcEEEEEe-CCCCEEEEEccc
Confidence 23333333 35555555 4 421 3578999999988 3344455566777775444 44444 557777999876
Q ss_pred CCc
Q 039790 604 PDG 606 (1395)
Q Consensus 604 g~~ 606 (1395)
+.+
T Consensus 403 ~~~ 405 (615)
T 1pgu_A 403 HEF 405 (615)
T ss_dssp EEC
T ss_pred Ccc
Confidence 553
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=299.99 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=211.3
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCC----C---CEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAED----V---HLL 273 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~d----g---~~L 273 (1395)
....+.+|.+.|++++|++ ++|++|+.||.|+|||+.++. ...+.+|...|++++| +++ + .+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV-LQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEE-EEEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEE-ecccccCCccccEE
Confidence 4567789999999999998 899999999999999999875 7888999999999999 777 8 999
Q ss_pred EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-----CCCccEEEEe----CCCCe-EEEEEeCCeEEEEEc
Q 039790 274 ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-----DSVHPRVCWH----PHKQE-ILMLAIGNRILKIDS 343 (1395)
Q Consensus 274 aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-----~~~v~~v~~s----p~~~~-lla~g~~~~ii~~d~ 343 (1395)
++|+.||.|++||+.++.... ...+..+..+ ...+.+++|+ +++.. +++++.++.+.+|+.
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETK---------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTC---------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccc---------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999876210 0113444555 5889999999 99998 777777888888887
Q ss_pred CCC-----CccccccCCCCCccCccccccceEEE-------cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 344 NRV-----GKGERFSAEEPLKCPVDELINGVQLV-------GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 344 ~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~l-------~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
... +....| .....+ ..|...|++++|+|++ +|++|+.||.|++||++++++
T Consensus 156 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 156 HPFADESNSLTLNW--------------SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp ESSSSHHHHTTTCC--------------CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE
T ss_pred Cccccccccceeec--------------cCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce
Confidence 541 111000 011133 4588999999999987 999999999999999999999
Q ss_pred eEEecC---C---CCCCeeEEEEeecCCCCCcEEEEEecCC---CeEEEEECCCCCCCCCCCCcccccEEEEEec-----
Q 039790 412 LAVLRP---Y---DGHPVNCVTFLIGPHPQHIVLITGGPLN---RELKIWASAEEEGWLLPSDIESWKCTQTLEL----- 477 (1395)
Q Consensus 412 l~tl~~---h---~~~~V~sV~fs~~~~pdg~~L~s~Gs~D---g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~----- 477 (1395)
+..+.+ | .. .|.+++|+ |++.+|++++ .| +.|++||+.++ +++..+..
T Consensus 220 ~~~~~~~~~h~~~~~-~i~~i~~~----~~~~~l~~~~-~d~~~g~i~i~d~~~~------------~~~~~~~~~~~~~ 281 (397)
T 1sq9_A 220 LYNFESQHSMINNSN-SIRSVKFS----PQGSLLAIAH-DSNSFGCITLYETEFG------------ERIGSLSVPTHSS 281 (397)
T ss_dssp EEEEECCC---CCCC-CEEEEEEC----SSTTEEEEEE-EETTEEEEEEEETTTC------------CEEEEECBC----
T ss_pred eEEEeccccccccCC-ccceEEEC----CCCCEEEEEe-cCCCCceEEEEECCCC------------cccceeccCcccc
Confidence 999998 8 77 99999999 9999999977 88 99999999988 88888887
Q ss_pred --------cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 478 --------KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 478 --------h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
|...+. .++|+++|.+|++++.||.|++||+..+
T Consensus 282 ~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 282 QASLGEFAHSSWVM---------SLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp ----CCBSBSSCEE---------EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cccccccccCCcEE---------EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 655443 5999999999999999999999999774
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=309.66 Aligned_cols=259 Identities=15% Similarity=0.140 Sum_probs=197.7
Q ss_pred eeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 209 ITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.....+|...|+|++|+| ++++||+|+.||.|+|||+.++. ...+.+|.+.|++|+|++.++++|++|+.||+|+|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345667889999999999 67899999999999999998763 44567899999999994357899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||++++. +..+.....+...+.+++|++++..+++++.++.+.+|+... ..
T Consensus 192 wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~---------------- 242 (435)
T 4e54_B 192 QDFKGNI------------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KE---------------- 242 (435)
T ss_dssp EETTSCE------------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CB----------------
T ss_pred eeccCCc------------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ce----------------
Confidence 9998643 112222223445677899999998888777788888887532 11
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE---ecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV---LRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t---l~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
+..+.+|.+.|++++|+|++..+|++|+.|++|+|||++++..... ..+|.. .|++|+|+ |+|.+|++
T Consensus 243 ----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~s----pdg~~l~s 313 (435)
T 4e54_B 243 ----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFS----PDGARLLT 313 (435)
T ss_dssp ----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBC----TTSSEEEE
T ss_pred ----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeEC----CCCCeeEE
Confidence 3345679999999999999877999999999999999998765443 357887 99999999 99999999
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe------------CC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA------------KK 509 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs------------~D 509 (1395)
++ .||+|+|||+.++ .+...+..|...... ... ...+.|++++.++++++ .+
T Consensus 314 ~~-~D~~i~iwd~~~~------------~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 314 TD-QKSEIRVYSASQW------------DCPLGLIPHPHRHFQ-HLT--PIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp EE-SSSCEEEEESSSS------------SSEEEECCCCCCCCS-SSC--CCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred Ec-CCCEEEEEECCCC------------ccceEEecccccccc-cce--eEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 77 9999999999887 777777666533211 000 11244555555555543 34
Q ss_pred CeEEEEEcCCCC
Q 039790 510 NAIYAIHMDYGP 521 (1395)
Q Consensus 510 g~I~iWdl~~g~ 521 (1395)
+.|++||+.+|+
T Consensus 378 ~~i~iwd~~~g~ 389 (435)
T 4e54_B 378 RTIDVFDGNSGK 389 (435)
T ss_dssp CCEEEECSSSCC
T ss_pred CEEEEEECCCCc
Confidence 579999987764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=297.07 Aligned_cols=259 Identities=17% Similarity=0.183 Sum_probs=205.6
Q ss_pred cceeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCCc-eEEe--ccCCCCeEEEEEeeC-CCCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITAL-RSLL--RGHTQRVTDMAFFAE-DVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~-~~~l--~~H~~~V~slaf~s~-dg~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|++++ ++|++|+.||.|+|||+.++. ...+ .+|.+.|.+++| ++ ++.+|++|+.||+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF-NQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE-ETTEEEEEEEEETTTE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe-CCCCCCEEEEEeCCCE
Confidence 4556778999999999999999 999999999999999999874 3333 479999999999 67 7899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|++||+.... +..+.....+...+.+++|++++..+++++.++.+.+|+.. +.
T Consensus 143 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~------------- 195 (383)
T 3ei3_B 143 TTLRDFSGSV------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH------------- 195 (383)
T ss_dssp EEEEETTSCE------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-------------
T ss_pred EEEEECCCCc------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-------------
Confidence 9999998532 22233233445779999999999988888878888888762 11
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----CceeEEecCCCCCCeeEEEEeecCCC-CC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK----STPLAVLRPYDGHPVNCVTFLIGPHP-QH 436 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s----g~~l~tl~~h~~~~V~sV~fs~~~~p-dg 436 (1395)
.+..+.+|...|++++|+|++..+|++|+.||+|++||+++ +.++..+ +|.+ .|++++|+ | ++
T Consensus 196 ------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s----~~~~ 263 (383)
T 3ei3_B 196 ------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFN----PTDS 263 (383)
T ss_dssp ------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEEC----TTTS
T ss_pred ------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEc----CCCC
Confidence 15667789999999999999844999999999999999998 6777777 6877 99999999 9 99
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccccccc---------ceEEEEeCCCCEEEEEe
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFF---------NQVVALNRAGLFLLANA 507 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~---------~~~l~~S~dg~~LaSgs 507 (1395)
.+|++++ .|+.|+|||++++ .++..+..|...... +...+ ...+.|+++|.+ +++
T Consensus 264 ~~l~~~~-~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s 327 (383)
T 3ei3_B 264 TKLLTTD-QRNEIRVYSSYDW------------SKPDQIIIHPHRQFQ-HLTPIKATWHPMYDLIVAGRYPDDQL--LLN 327 (383)
T ss_dssp CEEEEEE-SSSEEEEEETTBT------------TSCSEEEECCBCCCT-TSCCCCCEECSSSSEEEEECBCCTTT--CTT
T ss_pred CEEEEEc-CCCcEEEEECCCC------------ccccccccccccccc-cccceEEeccCCCCceEEEecCCccc--ccC
Confidence 9999977 9999999999987 666666655432211 00001 113566777776 778
Q ss_pred CCCeEEEEEcCCCC
Q 039790 508 KKNAIYAIHMDYGP 521 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~ 521 (1395)
.|+.|++||+.+++
T Consensus 328 ~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 328 DKRTIDIYDANSGG 341 (383)
T ss_dssp CCCCEEEEETTTCC
T ss_pred CCCeEEEEecCCCc
Confidence 99999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=320.09 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=210.7
Q ss_pred ceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....+.+|.+.|++++|+++ +++|++|+.||+|+|||+... ....+.+|...|.+++| ++++++|++|+.||
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~-s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL-SSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE-CTTSSEEEEEETTS
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE-CCCCCEEEEEeCCC
Confidence 34568899999999999986 479999999999999999763 34678999999999999 89999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|+|||+.++. .+..+..|...|.+++|++++..+++++.++.+.+|+........ +
T Consensus 453 ~v~vwd~~~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~-------- 509 (694)
T 3dm0_A 453 ELRLWDLAAGV--------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I-------- 509 (694)
T ss_dssp EEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E--------
T ss_pred cEEEEECCCCc--------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e--------
Confidence 99999999876 455667888999999999999988888888888888753211000 0
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.....+|...|.+++|+|++. .+|++|+.||+|+|||+++++++.++.+|.+ .|++|+|+ |+|++|
T Consensus 510 --------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s----pdg~~l 576 (694)
T 3dm0_A 510 --------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVS----PDGSLC 576 (694)
T ss_dssp --------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEE
T ss_pred --------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEe----CCCCEE
Confidence 001146899999999999862 4899999999999999999999999999998 99999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++++ .||+|+|||+.++ +++..+..+. ....++|++++.+|++++ ++.|++||+..
T Consensus 577 ~sg~-~Dg~i~iwd~~~~------------~~~~~~~~~~----------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 577 ASGG-KDGVVLLWDLAEG------------KKLYSLEANS----------VIHALCFSPNRYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp EEEE-TTSBCEEEETTTT------------EEEECCBCSS----------CEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred EEEe-CCCeEEEEECCCC------------ceEEEecCCC----------cEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence 9977 9999999999988 7776665432 123689999999988766 56699999987
Q ss_pred C
Q 039790 520 G 520 (1395)
Q Consensus 520 g 520 (1395)
+
T Consensus 633 ~ 633 (694)
T 3dm0_A 633 K 633 (694)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=282.86 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=221.4
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
...+|...|++++|++++++|++|+ ||.|+|||+.++. ...+. +|...|.+++| ++++++|++++.||.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-LPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-CTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEE-cCCCCEEEEEcCCCcEEE
Confidence 3347999999999999999999999 9999999998762 23333 79999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+++. ........+...+.+++|++++..+++++.++.+.+|+.....
T Consensus 124 ~d~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----------------- 174 (337)
T 1gxr_A 124 WDLAAPTP------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----------------- 174 (337)
T ss_dssp EECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------
T ss_pred EECCCCCc------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------------
Confidence 99987651 1334456677889999999999888888888888888764321
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
....+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+. |.+ .+.+++|+ |++.+|++++
T Consensus 175 ---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~-~v~~~~~s----~~~~~l~~~~- 243 (337)
T 1gxr_A 175 ---LVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTS-QIFSLGYC----PTGEWLAVGM- 243 (337)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSS-CEEEEEEC----TTSSEEEEEE-
T ss_pred ---eeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeec-CCC-ceEEEEEC----CCCCEEEEEc-
Confidence 156677899999999999998 899999999999999999999988886 454 89999999 9999999976
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|++||+.++ .. ..+..|...+. .+.|+++|.+|++++.||.|++|++..+..
T Consensus 244 ~~~~i~~~~~~~~------------~~-~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-- 299 (337)
T 1gxr_A 244 ESSNVEVLHVNKP------------DK-YQLHLHESCVL---------SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-- 299 (337)
T ss_dssp TTSCEEEEETTSS------------CE-EEECCCSSCEE---------EEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred CCCcEEEEECCCC------------Ce-EEEcCCcccee---------EEEECCCCCEEEEecCCCcEEEEECCCCeE--
Confidence 8999999999876 43 34555555443 599999999999999999999999987541
Q ss_pred CcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEc
Q 039790 525 STRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 525 ~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv 563 (1395)
+..+.....+.++..... ..+ .+.||.|++|++
T Consensus 300 ------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 300 ------IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ------EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 112222233433333320 111 346777777775
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=300.82 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=210.9
Q ss_pred cceeee-eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC---Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEEC
Q 039790 207 TPITKY-ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT---AL---RSLLRGHTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 207 ~~i~~l-~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~---~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
..+..+ .+|.+.|++++|++ ++++|++|+.||+|+|||+.+ +. .....+|.+.|++|+| ++++.+|++|+.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM-IPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE-CTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEE-eCCCCEEEEEeC
Confidence 556677 78999999999999 999999999999999999977 42 1222269999999999 789999999999
Q ss_pred CCcEEEEECC---CCCCCCCCcccccceEEEEEEecC-CCCCccEEE--EeCCCCeEEEEEeCCeEEEEEcCCCCccccc
Q 039790 279 DGRFFIWNIT---EGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVC--WHPHKQEILMLAIGNRILKIDSNRVGKGERF 352 (1395)
Q Consensus 279 DgtV~IWdl~---tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~--~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~ 352 (1395)
||+|++||+. .++... ...+..+..+.+... +...+.++. +++++..+++++.++.+.+|+.....
T Consensus 132 dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----- 203 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE----- 203 (437)
T ss_dssp TSEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----
T ss_pred CCEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 9999999995 443111 011112222222221 455666666 55777777777777777777764321
Q ss_pred cCCCCCccCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEe
Q 039790 353 SAEEPLKCPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFL 429 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs 429 (1395)
.+..+.+ |.+.|++++|+|++ .+|++|+.||+|++||+++++++.++. +|.. .|++++|+
T Consensus 204 ---------------~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~ 266 (437)
T 3gre_A 204 ---------------RLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVC 266 (437)
T ss_dssp ---------------EEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-EEEEEEEC
T ss_pred ---------------eeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-ceEEEEec
Confidence 1455666 88999999999998 899999999999999999999999986 6766 89999887
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-----------------ccccce
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-----------------DAFFNQ 492 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-----------------~~~~~~ 492 (1395)
+..++++.+|++++ .||.|+|||+.++ +++..+..|...+.... ....+.
T Consensus 267 ~~~s~~~~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 267 QFYGKNSVIVVGGS-SKTFLTIWNFVKG------------HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp TTTCTTEEEEEEES-TTEEEEEEETTTT------------EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cccCCCccEEEEEc-CCCcEEEEEcCCC------------cEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 55557888888865 9999999999988 89999987764332110 111234
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 493 VVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 493 ~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++|+ ++.+|++|+.|+.|++||+..++
T Consensus 334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 334 TISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred EEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 68888 88999999999999999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=292.80 Aligned_cols=274 Identities=16% Similarity=0.258 Sum_probs=225.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee-CCCCCEEEEEEecCCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI-SDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~-~h~~~V~~va~Spdg~~LasGs 235 (1395)
.+..+++++.|+.|++|+... |+ ....+. .|...|.+++|++++++|++|+
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~--~~--------------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADS--GS--------------------------VSALAETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTT--CC--------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCEEEEECCCeEEEeeCCC--Cc--------------------------EeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence 346688899999999999541 11 111222 3788999999999999999999
Q ss_pred cCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 236 KLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 236 ~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
.||.|+|||+.++ .+..+.+|...|.+++| ++++|++|+.||.|++||+.... ..+..+..|.
T Consensus 154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~ 217 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIAN-------------HQIGTLQGHS 217 (401)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCS
T ss_pred CCCeEEEEECcCCeEEEEecCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCc-------------ceeeEEcCCC
Confidence 9999999999987 47788899999999999 56899999999999999998543 1345566788
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..+.+++|++++..+++++.++.+.+|+..... ....+.+|...|.+++|+|++..++++
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------------------PKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------------------EEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------------------ccEEecCCcceEEEEEECCCCCCEEEE
Confidence 999999999999888888888888888775321 155677899999999999998778888
Q ss_pred Ee--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 395 AS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 395 gs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
|+ .||.|++||+++++++..+..+ . .|.+++|+ |++.+|+++ |+.||.|+|||+.++ .+
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~~~-~-~v~~~~~s----~~~~~l~~~~g~~dg~i~v~~~~~~------------~~ 339 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVDAG-S-QVTSLIWS----PHSKEIMSTHGFPDNNLSIWSYSSS------------GL 339 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEECS-S-CEEEEEEC----SSSSEEEEEECTTTCEEEEEEEETT------------EE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCC-C-cEEEEEEC----CCCCeEEEEeecCCCcEEEEecCCc------------cc
Confidence 76 8999999999999999999754 4 79999999 999999886 447999999999876 44
Q ss_pred EE--EEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 472 TQ--TLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 472 l~--tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. .+.+|...+. .++|+++|.+|++++.||.|++|++..++
T Consensus 340 ~~~~~~~~h~~~v~---------~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 340 TKQVDIPAHDTRVL---------YSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEECCSSCCC---------EEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred eeEEEecCCCCCEE---------EEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 43 4566665543 48999999999999999999999998865
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=288.24 Aligned_cols=315 Identities=14% Similarity=0.089 Sum_probs=231.6
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.+++..|++++.|+.|++|+... + +...+..+.+|...|.+++|++++++
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~--------------------~------~~~~~~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSG--------------------N------KWVQVHELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEET--------------------T------EEEEEEEEECCSSCEEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC--------------------C------cEEeeeeecCCCCcccEEEEeCCCCE
Confidence 355667778888888899999988331 0 01256677889999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
|++|+.||.|++||+.++. ...+.+|...|.+++| ++++++|++|+.||.|++||+..+.. .....
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~ 135 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW-APNEKKFAVGSGSRVISICYFEQEND----------WWVCK 135 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE-CTTSSEEEEEETTSSEEEEEEETTTT----------EEEEE
T ss_pred EEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE-CCCCCEEEEEeCCCEEEEEEecCCCc----------ceeee
Confidence 9999999999999998874 4455789999999999 89999999999999999999997651 11223
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.+...|...+.+++|++++..+++++.++.+.+|+......... .....+.. .......+..+.+|...|++++|+|+
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER-PAPTPWGS-KMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC-CCCBTTBS-CCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccc-cccccccc-ccchhhheEecCCCCCeEEEEEECCC
Confidence 34466788999999999998888888888888888642111000 00000000 00011225667789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC-CCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG-WLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~-~~~~~~~ 466 (1395)
+ .+|++++.||.|++||+++++++..+.+|.. .|.+++|+ |++.+|++ | .|+.|++||+....+ |.+....
T Consensus 214 ~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~~-~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 214 G-SRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFI----TESSLVAA-G-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp S-SEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEE----ETTEEEEE-E-TTSSCEEEEEETTTTEEEECCCC
T ss_pred C-CEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEe----cCCCEEEE-E-eCCeEEEEEccCcCceEEEeecc
Confidence 8 8999999999999999999999999999987 99999999 89987776 5 799999999987111 0000000
Q ss_pred ---------------------ccccEE------EEE-eccCcccccccccccceEEEEeCCC---CEEEEEeCCCeEEEE
Q 039790 467 ---------------------ESWKCT------QTL-ELKSSAELRLEDAFFNQVVALNRAG---LFLLANAKKNAIYAI 515 (1395)
Q Consensus 467 ---------------------~~~~~l------~tl-~~h~~~i~~~~~~~~~~~l~~S~dg---~~LaSgs~Dg~I~iW 515 (1395)
..+... ..+ .+|...+ ..+..++++| .+|++|+.||.|++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--------~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV--------SQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE--------EEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCc--------ceeEEecCCCcceeeEEEecCCCceEEE
Confidence 000000 111 1333332 2233466888 999999999999999
Q ss_pred EcCCC
Q 039790 516 HMDYG 520 (1395)
Q Consensus 516 dl~~g 520 (1395)
++..+
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 99764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-28 Score=295.60 Aligned_cols=285 Identities=14% Similarity=0.211 Sum_probs=225.3
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
..+++..|++++.||.|++||.. .+..+..+.+|.+.|++++|++++ +|++
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s 178 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSI----------------------------NKKFLLQLSGHDGGVWALKYAHGG-ILVS 178 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETT----------------------------TTEEEEEECCCSSCEEEEEECSTT-EEEE
T ss_pred EEECCCEEEEEcCCCcEEEEECC----------------------------CCcEEEEEeCCCcCEEEEEEcCCC-EEEE
Confidence 34456899999999999999944 124556778899999999999988 9999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc---------
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK--------- 302 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~--------- 302 (1395)
|+.||+|+|||+.++ ....+.+|.+.|.+++|+. +++.+|++|+.||+|++||+.++............
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 999999999999988 5778899999999999943 67899999999999999999987632211100000
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
....+.....|...+.++ ++++..+++++.++.+.+|+..... .+..+.+|...|+++
T Consensus 259 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--------------------CLYILSGHTDRIYST 316 (464)
T ss_dssp CTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE--------------------EEEEECCCSSCEEEE
T ss_pred CeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEecCCCCCEEEE
Confidence 000234455566665554 6677778888888888888764321 156778899999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
+|++++ .+|++|+.||+|++||+++++++.++.+|.. .|.++.|+ +.+|++++ .||+|++||+.++
T Consensus 317 ~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~------~~~l~s~s-~dg~v~vwd~~~~----- 382 (464)
T 3v7d_B 317 IYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS------DKFLVSAA-ADGSIRGWDANDY----- 382 (464)
T ss_dssp EEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC------SSEEEEEE-TTSEEEEEETTTC-----
T ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc------CCEEEEEe-CCCcEEEEECCCC-----
Confidence 999998 8999999999999999999999999999997 99999996 57888876 9999999999887
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+. +.. ....++|++++.+|++|+ ||.|++||+.+|+
T Consensus 383 -------~~~~~~~-~~~---------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 383 -------SRKFSYH-HTN---------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp -------CEEEEEE-CTT---------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred -------ceeeeec-CCC---------CccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 5544443 121 123588999999999998 8999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=297.92 Aligned_cols=318 Identities=10% Similarity=0.087 Sum_probs=228.3
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+++++|+++|++|++|+.||.|++||+.++. ...+..| .+.++.++++++++|++|+.||.|+|||+.++.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------ 130 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------ 130 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence 4478999999999999999999999998874 3344455 455554448999999999999999999998765
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
....+..|...+.+++|+|++..+++++.++.+.+|+...... +..+.+|.+
T Consensus 131 --------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------------------~~~~~~h~~ 182 (420)
T 3vl1_A 131 --------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------------------PRTLIGHRA 182 (420)
T ss_dssp --------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------------------CEEEECCSS
T ss_pred --------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------------------ceEEcCCCC
Confidence 4556678899999999999998888777778888887643211 466778999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC---CCCCeeEEEEeec-----------------CCCCCc
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY---DGHPVNCVTFLIG-----------------PHPQHI 437 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h---~~~~V~sV~fs~~-----------------~~pdg~ 437 (1395)
.|++++|+|++ .+|++|+.||+|++||+++++++..+..| .. .|.+++|.+. -+|+|+
T Consensus 183 ~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 183 TVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred cEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC-CccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 99999999998 89999999999999999999999999854 22 4555554211 018899
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAI 515 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iW 515 (1395)
+|++++ .||.|+|||++++ +.+..+.. |...+ ..++|+++|. +|++|+.||.|++|
T Consensus 261 ~l~~~~-~dg~i~i~d~~~~------------~~~~~~~~~~~~~v---------~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 261 YVIAGH-VSGVITVHNVFSK------------EQTIQLPSKFTCSC---------NSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp EEEEEE-TTSCEEEEETTTC------------CEEEEECCTTSSCE---------EEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EEEEEc-CCCeEEEEECCCC------------ceeEEcccccCCCc---------eeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 999876 9999999999987 66666643 33333 3599999999 99999999999999
Q ss_pred EcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCce------------eeecccceEEecC
Q 039790 516 HMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAI------------QQYALDLSQCLPP 581 (1395)
Q Consensus 516 dl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i------------~~~~~~~~~cl~~ 581 (1395)
|+..+.. .+..+.... ..++..+.......+ ++.|+.|+||++..... ...+.....++.+
T Consensus 319 d~~~~~~----~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 319 DLRSPEC----PVGEFLINE-GTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp ETTCTTS----CSEEEEEST-TSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred EcCCCcC----chhhhhccC-CCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence 9987642 111222111 112222211110122 35789999999887311 1112222334443
Q ss_pred CCCC-----eecccCCCceEEEeecC
Q 039790 582 PLEN-----AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 582 s~d~-----l~~~~sd~~v~~iWD~~ 602 (1395)
++++ +...+ +.+.+++|++.
T Consensus 394 s~~~~~~g~l~a~g-~~g~~~~~~~~ 418 (420)
T 3vl1_A 394 VSDDESNGEVLEVG-KNNFCALYNLS 418 (420)
T ss_dssp ECCSSSSCEEEEEE-TTTEEEEEESC
T ss_pred ccCCCCcceEEEEc-CCceEEEEecc
Confidence 3332 34444 45777799875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=290.59 Aligned_cols=281 Identities=10% Similarity=0.076 Sum_probs=216.1
Q ss_pred ccCCCCC-CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPPPS-DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~p~-~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.+.+ ..|++++.|+.|++|++... + ......+.+|...|.+++|++ +++
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~------------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQ--N------------------------KTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTST--T------------------------CEEEECCCSTTCBEEEEEEETTEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCc--c------------------------cceeeecCCcCCceeEEEeCCCCCC
Confidence 5556666 78999999999999994411 0 011222346999999999999 789
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||.|+|||+.+.....+..| ...|.+++| ++++.+|++|+.||.|++||+. +. .
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~-~~--------------~ 196 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV-SVSRQMLATGDSTGRLLLLGLD-GH--------------E 196 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEE-ETTTTEEEEEETTSEEEEEETT-SC--------------E
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEE-CCCCCEEEEECCCCCEEEEECC-CC--------------E
Confidence 999999999999999998776666554 488999999 8999999999999999999994 44 3
Q ss_pred EEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..|...+.+++|+|++. .+++++.++.+.+|+....... ...+..+ +|...|++++|+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------------NSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------------TCEEEEE-ECSSCEEEEEEC
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------------cceEEEe-cCCCceEEEEEc
Confidence 455667889999999999998 4555555666666666432110 0113334 699999999999
Q ss_pred c-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC----------------CCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 386 Q-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG----------------HPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 386 p-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~----------------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
| ++ .+|++++.||.|+|||++++.++..+.+|.. ..+..++|+ |+|++ + |+.|+.
T Consensus 260 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s----~dg~~--s-~s~d~~ 331 (383)
T 3ei3_B 260 PTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY----PDDQL--L-LNDKRT 331 (383)
T ss_dssp TTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB----CCTTT--C-TTCCCC
T ss_pred CCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec----CCccc--c-cCCCCe
Confidence 9 87 8999999999999999999988777775531 134446666 66666 4 458999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||+.++ +++.++.++... .+...++|+++|.+|++++ |+.|++|+++.
T Consensus 332 i~iwd~~~~------------~~~~~l~~~~~~-------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 332 IDIYDANSG------------GLVHQLRDPNAA-------GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEETTTC------------CEEEEECBTTBC-------SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCCC------------ceeeeecCCCCC-------ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999988 889999875411 1223579999999999997 99999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=294.15 Aligned_cols=257 Identities=18% Similarity=0.213 Sum_probs=196.3
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWd 286 (1395)
.+.+|.+.|++++|+++|++||+|+.||+|+|||+.++ .+..+.+|.+.|++++|+++ ++++|++|+.||+|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45689999999999999999999999999999999876 35678999999999999433 589999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+.++.. ..+..+..|...|.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 88 ~~~~~~------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--------------- 140 (316)
T 3bg1_A 88 EENGTW------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--------------- 140 (316)
T ss_dssp CSSSCC------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------------
T ss_pred CCCCcc------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------------
Confidence 987641 123445678889999999998 445555556666777665432110
Q ss_pred cccceEEEcccCCCeEEEEEecCC----------------CcEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCCeeE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWL----------------TTRLASASLDGTVKIWDDRKS---TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg----------------~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~s 425 (1395)
.....+.+|...|.+++|+|++ ..+|++|+.|++|+|||++.+ .++.++.+|.+ .|++
T Consensus 141 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~ 217 (316)
T 3bg1_A 141 --EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRD 217 (316)
T ss_dssp --EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEE
T ss_pred --ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEE
Confidence 0012345799999999999973 268999999999999999765 57788999997 9999
Q ss_pred EEEeecCCCCC----cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 426 VTFLIGPHPQH----IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 426 V~fs~~~~pdg----~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
|+|+ |++ .+|++++ .|++|+|||+.+... .. .....+..|...+ ..++|+++|.
T Consensus 218 v~~s----p~~~~~~~~las~s-~D~~v~iw~~~~~~~-------~~-~~~~~~~~~~~~v---------~~v~~sp~g~ 275 (316)
T 3bg1_A 218 VAWA----PSIGLPTSTIASCS-QDGRVFIWTCDDASS-------NT-WSPKLLHKFNDVV---------WHVSWSITAN 275 (316)
T ss_dssp EECC----CCSSCSCCEEEEEE-TTCEEEEEECSSTTC-------CC-CBCCEEEECSSCE---------EEEEECTTTC
T ss_pred EEec----CCCCCCCceEEEEc-CCCeEEEEEccCccc-------cc-hhhhhhhcCCCcE---------EEEEEcCCCC
Confidence 9999 776 7788866 999999999976300 00 1122334444433 3599999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 039790 502 FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|++++.|+.|++|+...
T Consensus 276 ~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEESSSCEEEEEECT
T ss_pred EEEEEcCCCeEEEEEECC
Confidence 999999999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-28 Score=277.73 Aligned_cols=286 Identities=12% Similarity=0.132 Sum_probs=223.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..+.+|.+.|.+++| +++++|++|+.||.|+|||+.++. ...+..|...|.+++| ++++.+|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY-DSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEE-ETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEE-CCCCCEEEEecCCCeEEEE
Confidence 567889999999999999 999999999999999999998874 6678899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
++....... .+..+..|...+.++.| ++..+++++.++.+.+|+. +.
T Consensus 87 ~~~~~~~~~-----------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~----------------- 133 (313)
T 3odt_A 87 PLFATSGED-----------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GS----------------- 133 (313)
T ss_dssp ETTCCTTSC-----------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TE-----------------
T ss_pred EeeecCCCC-----------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---Cc-----------------
Confidence 998754111 23345677888889999 4556777777777777761 11
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
....+..|...|.+++|++.++.+|++++.||.|++|| .+..+..+.. |.. .|.+++|+ |++. +++++
T Consensus 134 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~-~i~~~~~~----~~~~-~~~~~- 202 (313)
T 3odt_A 134 --LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND-VVRHLAVV----DDGH-FISCS- 202 (313)
T ss_dssp --EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS-CEEEEEEE----ETTE-EEEEE-
T ss_pred --EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc-cEEEEEEc----CCCe-EEEcc-
Confidence 15667789999999999993338999999999999999 5677888887 766 99999999 8888 77766
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|++||++++ +++..+..|...+. .++|+++| .|++++.||.|++||+..++
T Consensus 203 ~dg~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--- 257 (313)
T 3odt_A 203 NDGLIKLVDMHTG------------DVLRTYEGHESFVY---------CIKLLPNG-DIVSCGEDRTVRIWSKENGS--- 257 (313)
T ss_dssp TTSEEEEEETTTC------------CEEEEEECCSSCEE---------EEEECTTS-CEEEEETTSEEEEECTTTCC---
T ss_pred CCCeEEEEECCch------------hhhhhhhcCCceEE---------EEEEecCC-CEEEEecCCEEEEEECCCCc---
Confidence 9999999999988 89999998887654 49999999 58899999999999998754
Q ss_pred Ccceeeeeeeecc-ccEEEEecCCC-CcC-cCCCCeEEEEEcCCCce
Q 039790 525 STRMDYIAEFTVT-MPILSLTGTTT-DAS-PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 525 ~~~~~~i~~f~~~-~~ils~~~~~~-d~~-~s~dg~V~lWdv~t~~i 568 (1395)
.+..+..+ ..+..+..... ..+ .+.|+.|++|++.++++
T Consensus 258 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 258 -----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp -----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred -----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 22222222 23333333320 111 34567777777776643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=277.68 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=222.0
Q ss_pred CCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEE
Q 039790 156 PPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 156 ~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs 235 (1395)
+++..|++++.||.|++|++. .......+..|...|.+++|++++++|++|+
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKD----------------------------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp EETTEEEEEETTSEEEEEEES----------------------------SSEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEEcCCcEEEEECC----------------------------CCEEEEEeecCCccEEEEEECCCCCEEEEec
Confidence 456788999999999999832 1133455667889999999999999999999
Q ss_pred cCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 236 KLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 236 ~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
.||.|++|++... ....+.+|...|.+++| ++++|++|+.||.|++|| .+. .+..+.
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~--------------~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGS--------------LVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTE--------------EEEEEE
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCc--------------EEEecc
Confidence 9999999998764 36788899999999999 578999999999999999 332 345566
Q ss_pred CCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCeEEEEEecCCC
Q 039790 312 DGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEITELSMCQWLT 389 (1395)
Q Consensus 312 ~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~ 389 (1395)
.+...+.+++|++ ++..+++++.++.+.+|+... ....+.. |...|.+++|++++
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~i~~~~~~~~~- 196 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------------------VIKTFSGIHNDVVRHLAVVDDG- 196 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------------------EEEEECSSCSSCEEEEEEEETT-
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------------------eEEEEeccCcccEEEEEEcCCC-
Confidence 7888899999998 777777777777887777211 1445555 89999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
. |++++.||.|++||+++++++..+.+|.+ .|++++|+ |++ .|++++ .||.|++||+.++
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~-~l~~~~-~dg~v~iwd~~~~------------ 256 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLL----PNG-DIVSCG-EDRTVRIWSKENG------------ 256 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEC----TTS-CEEEEE-TTSEEEEECTTTC------------
T ss_pred e-EEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEe----cCC-CEEEEe-cCCEEEEEECCCC------------
Confidence 5 99999999999999999999999999997 99999999 888 577766 9999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++..+..|...+. .++|+++|. +++++.||.|++|++..++
T Consensus 257 ~~~~~~~~~~~~i~---------~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 257 SLKQVITLPAISIW---------SVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CEEEEEECSSSCEE---------EEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred ceeEEEeccCceEE---------EEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 89999998876553 489999998 5568899999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=305.38 Aligned_cols=304 Identities=14% Similarity=0.158 Sum_probs=222.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~ 230 (1395)
+.+.+++..|++++.|+.|++|++.... .....+..+.+|...|.+++|+++ +++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 128 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEAN------------------------NAINSMARFSNHSSSVKTVKFNAKQDNV 128 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTT------------------------SCCCEEEECCCSSSCCCEEEECSSSTTB
T ss_pred EEECCCCCeEEEEccCCeEEEeeccccc------------------------ccccchhhccCCccceEEEEEcCCCCCE
Confidence 5556677888888888888888843110 001355677889999999999998 899
Q ss_pred EEEEEcCCeEEEEECCCCc------e----EEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 231 ICYGLKLGNIRILNIITAL------R----SLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~------~----~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
|++|+.||.|+|||+.++. . ..+.+|...|.+++| +++ +.+|++|+.||.|++||+.+++
T Consensus 129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~-------- 199 (416)
T 2pm9_A 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW-NQSLAHVFASAGSSNFASIWDLKAKK-------- 199 (416)
T ss_dssp EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE-CSSCTTEEEEESSSSCEEEEETTTTE--------
T ss_pred EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe-CCCCCcEEEEEcCCCCEEEEECCCCC--------
Confidence 9999999999999998864 1 234679999999999 777 7899999999999999999876
Q ss_pred ccceEEEEEEecCC------CCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 300 LGKIVVAIQILADG------DSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~------~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
.+..+..+ ...+.+++|+|++..+++++..+ .+.+|+....... .
T Consensus 200 ------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-------------------~ 254 (416)
T 2pm9_A 200 ------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-------------------L 254 (416)
T ss_dssp ------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-------------------S
T ss_pred ------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-------------------c
Confidence 23333333 67899999999986566555554 6777766442211 3
Q ss_pred EEEc-ccCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCC
Q 039790 370 QLVG-KHDGEITELSMCQ-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLN 446 (1395)
Q Consensus 370 ~~l~-~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~D 446 (1395)
..+. +|...|++++|+| ++ .+|++++.||+|++||+++++++..+.+|.+ .|++++|+ |++ .+|++++ .|
T Consensus 255 ~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~~l~s~~-~d 327 (416)
T 2pm9_A 255 QTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFA----PEAPDLFACAS-FD 327 (416)
T ss_dssp BCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEEC----TTCTTEEEECC-SS
T ss_pred EEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEEC----CCCCCEEEEEe-cC
Confidence 3455 7999999999999 66 8999999999999999999999999999987 99999999 998 6777755 99
Q ss_pred CeEEEEECCCCCCCCCCCC---cccccEEEEEec-----cCccccc-----cc-ccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 447 RELKIWASAEEEGWLLPSD---IESWKCTQTLEL-----KSSAELR-----LE-DAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~---~~~~~~l~tl~~-----h~~~i~~-----~~-~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
+.|+|||+.+......... .........+.. |...+.. .. ....+..++|+++|++|++++.|+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 9999999987632111100 000000000000 1000000 00 01122358999999999999999999
Q ss_pred EEEEcCCC
Q 039790 513 YAIHMDYG 520 (1395)
Q Consensus 513 ~iWdl~~g 520 (1395)
+||++.++
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99998763
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=306.60 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=213.1
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.| .+..|++|+.||.|++||+...+ ...+..+.+|.+.|++++|+| +++
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCCCEEEECSSCTT
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCEEEEEEeCCCCC
Confidence 44444 34689999999999999954211 123345668999999999998 789
Q ss_pred EEEEEEcCCeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||+|+|||+.++....+.. +...+.+++| ++++.+|++|+.||+|++||+....
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV-SASSRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE-ETTTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE-CCCCCEEEEEeCCCcEeeeccCcce---------------
Confidence 99999999999999999886554443 3446889999 8999999999999999999987532
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..|...|.+++|+|++..+++++.. +.+.+|+........ .+....+|...|++++|+
T Consensus 243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s 305 (435)
T 4e54_B 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-----------------SFLYSLPHRHPVNAACFS 305 (435)
T ss_dssp CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-----------------CCSBCCBCSSCEEECCBC
T ss_pred eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-----------------eEEEeeeccccccceeEC
Confidence 22345678889999999999877776664 555566554322110 012234699999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC-----CeeEEEEeecCCCCCcEEEEEec-----------CCCeE
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH-----PVNCVTFLIGPHPQHIVLITGGP-----------LNREL 449 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~-----~V~sV~fs~~~~pdg~~L~s~Gs-----------~Dg~I 449 (1395)
|+| .+|++|+.||+|+|||++++.+...+.+|... .+..+.|+ +++.+++++++ .++.|
T Consensus 306 pdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 306 PDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH----PRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp TTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC----SSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred CCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc----CCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 998 89999999999999999999998888776531 23455666 66666666542 34689
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+|||..++ +++..+.. |...+ ..+++|+++|.+|++|+ |+.|+||+++.|+
T Consensus 381 ~iwd~~~g------------~~~~~l~~~~~~~v--------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 381 DVFDGNSG------------KMMCQLYDPESSGI--------SSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EEECSSSC------------CEEEEECCSSCCCC--------CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEECCCC------------cEEEEEeCCCCCcE--------EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999988 88877753 33332 33568999999999876 7899999998864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=291.14 Aligned_cols=317 Identities=15% Similarity=0.210 Sum_probs=244.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|.+.|.. +++++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| . +++|++|+.||+|++|
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-R--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE-E--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEe-c--CCEEEEEeCCCeEEEE
Confidence 345678899887533 35667999999999999999999987 47789999999999999 3 6799999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.++.|+ +..+++++.++.+.+|+.... .
T Consensus 185 d~~~~~--------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-~----------------- 230 (445)
T 2ovr_B 185 NAETGE--------------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-Q----------------- 230 (445)
T ss_dssp ETTTTE--------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-C-----------------
T ss_pred ECCcCc--------------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-c-----------------
Confidence 999876 455667788889999996 455777777777777776432 1
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+.+|...|++++| ++ .+|++|+.||.|++||+++++++.++.+|.+ .|.++.| ++.+|++++ .
T Consensus 231 --~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~------~~~~l~~~~-~ 297 (445)
T 2ovr_B 231 --CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF------DGIHVVSGS-L 297 (445)
T ss_dssp --EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE------CSSEEEEEE-T
T ss_pred --EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE------CCCEEEEEe-C
Confidence 15667789999999999 55 7999999999999999999999999999987 9999999 477888876 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|+.|++||+.++ +++.++..|...+ .++..++.+|++|+.||.|++||+..+.
T Consensus 298 d~~i~i~d~~~~------------~~~~~~~~~~~~v-----------~~~~~~~~~l~~~~~dg~i~vwd~~~~~---- 350 (445)
T 2ovr_B 298 DTSIRVWDVETG------------NCIHTLTGHQSLT-----------SGMELKDNILVSGNADSTVKIWDIKTGQ---- 350 (445)
T ss_dssp TSCEEEEETTTC------------CEEEEECCCCSCE-----------EEEEEETTEEEEEETTSCEEEEETTTCC----
T ss_pred CCeEEEEECCCC------------CEEEEEcCCcccE-----------EEEEEeCCEEEEEeCCCeEEEEECCCCc----
Confidence 999999999988 8899998877543 3344568899999999999999998754
Q ss_pred cceeeeeeee-ccccEEEEecCCCCcC--cCCCCeEEEEEcCCCceee-e-------cccceEEecCCCCC--eecccCC
Q 039790 526 TRMDYIAEFT-VTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQ-Y-------ALDLSQCLPPPLEN--AELEKTD 592 (1395)
Q Consensus 526 ~~~~~i~~f~-~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~-~-------~~~~~~cl~~s~d~--l~~~~sd 592 (1395)
.+..+.... ...++.++.... ..+ ++.||.|+||++.+++... + +.....++.+++++ +++++.|
T Consensus 351 -~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 351 -CLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp -EEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred -EEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 222222211 123444444333 333 4579999999999987642 2 23446788888886 4555544
Q ss_pred Cc---eEEEeecCC
Q 039790 593 SN---ATRAFDVAN 603 (1395)
Q Consensus 593 ~~---v~~iWD~~t 603 (1395)
+. .+.+||...
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 32 377999853
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-27 Score=289.04 Aligned_cols=303 Identities=16% Similarity=0.229 Sum_probs=238.7
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+.+.+..|++++.||.|++|+.. .+..+..+.+|.+.|.++.|+ +++|++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s 174 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAV----------------------------TGKCLRTLVGHTGGVWSSQMR--DNIIIS 174 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETT----------------------------TCCEEEECCCCSSCEEEEEEE--TTEEEE
T ss_pred EEEcCCEEEEEECCCcEEEEECC----------------------------CCcEEEEEcCCCCCEEEEEec--CCEEEE
Confidence 44556889999999999999943 123456677899999999997 679999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.||.|++||+.++ ....+.+|...|.+++| ++++|++|+.||+|++||+.+++ .+..+..
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~ 237 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQ--------------CLHVLMG 237 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCC--------------EEEEEEC
T ss_pred EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe---cCCEEEEEeCCCEEEEEECCCCc--------------EEEEEcC
Confidence 999999999999988 47788999999999999 46789999999999999999877 4555667
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
|...+.++.| ++..+++++.++.+.+|+.... ..+..+.+|...|.+++| ++ .+|
T Consensus 238 ~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~--~~-~~l 292 (445)
T 2ovr_B 238 HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE--------------------TCLHTLQGHTNRVYSLQF--DG-IHV 292 (445)
T ss_dssp CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--------------------EEEEEECCCSSCEEEEEE--CS-SEE
T ss_pred CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--------------------cEeEEecCCCCceEEEEE--CC-CEE
Confidence 8888989988 6667777777888888876431 115667789999999999 55 799
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
++|+.||.|++||+++++++.++.+|.. .+.++.++ +.+|++++ .||.|++||+.++ +++
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~~~-~dg~i~vwd~~~~------------~~~ 352 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELK------DNILVSGN-ADSTVKIWDIKTG------------QCL 352 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEE------TTEEEEEE-TTSCEEEEETTTC------------CEE
T ss_pred EEEeCCCeEEEEECCCCCEEEEEcCCcc-cEEEEEEe------CCEEEEEe-CCCeEEEEECCCC------------cEE
Confidence 9999999999999999999999999987 89988885 56888866 9999999999988 888
Q ss_pred EEEecc---CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee---eccccEEEEecC
Q 039790 473 QTLELK---SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF---TVTMPILSLTGT 546 (1395)
Q Consensus 473 ~tl~~h---~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f---~~~~~ils~~~~ 546 (1395)
.++..+ ...+ ..+.| ++.+|++|+.||.|++||+.+++ .+..+..+ .....+.++...
T Consensus 353 ~~~~~~~~~~~~v---------~~~~~--~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 353 QTLQGPNKHQSAV---------TCLQF--NKNFVITSSDDGTVKLWDLKTGE-----FIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp EEECSTTSCSSCE---------EEEEE--CSSEEEEEETTSEEEEEETTTCC-----EEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEccCCCCCCCE---------EEEEE--CCCEEEEEeCCCeEEEEECCCCc-----eeeeeeccccCCCCceEEEEEec
Confidence 888873 3322 23555 57899999999999999998864 22222111 122345444444
Q ss_pred CCCcC----cCCCCe----EEEEEcCC
Q 039790 547 TTDAS----PDGEHI----VQIYCVQT 565 (1395)
Q Consensus 547 ~~d~~----~s~dg~----V~lWdv~t 565 (1395)
. +.. ++.||. |.|||+..
T Consensus 417 ~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 N-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp S-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred C-CEEEEEEcccCCCCccEEEEEECCC
Confidence 3 221 345565 99999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=274.85 Aligned_cols=276 Identities=12% Similarity=0.147 Sum_probs=224.4
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee--CCCCCEEEEEEecCC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI--SDPGLVLGRQIAVNR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~--~h~~~V~~va~Spdg 228 (1395)
.+.+.+.+..|++++ |+.|++|++.... ....+..+. +|...|.+++|++++
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPG-------------------------NKSPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTT-------------------------CCSCSEEEECSCTTSBEEEEEECTTS
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCC-------------------------ceeeeecccccCCCCcEEEEEEcCCC
Confidence 356666777888887 8888888844210 001222222 688999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 229 NYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++|++|+.||.|++||+.++. ...+.+|...|.+++| ++++++|++++.||.|++||+.+++
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~-------------- 174 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDSKVCFSCCSDGNIAVWDLHNQT-------------- 174 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--------------
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCc--------------
Confidence 999999999999999999874 5678889999999999 8899999999999999999999876
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+..+..|...+.+++|+|++..+++++.++.+.+|+...... ...+ .|...+.+++|+
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------~~~~-~~~~~v~~~~~s 233 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------------------LQQH-DFTSQIFSLGYC 233 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------------EEEE-ECSSCEEEEEEC
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--------------------Eeee-cCCCceEEEEEC
Confidence 4455667888999999999998888888888888887643211 2223 478899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
|++ .+|++++.||.|++||++++.. ..+..|.+ .|.+++|+ |++++|++++ .||.|++||+.++
T Consensus 234 ~~~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~i~~~~~~~~-------- 297 (337)
T 1gxr_A 234 PTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHES-CVLSLKFA----YCGKWFVSTG-KDNLLNAWRTPYG-------- 297 (337)
T ss_dssp TTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETTTC--------
T ss_pred CCC-CEEEEEcCCCcEEEEECCCCCe-EEEcCCcc-ceeEEEEC----CCCCEEEEec-CCCcEEEEECCCC--------
Confidence 998 8999999999999999998875 46778887 99999999 9999999977 8999999999887
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.+..+. |...+ ..+.|++++.+|++++.||.|++|++.
T Consensus 298 ----~~~~~~~-~~~~v---------~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 298 ----ASIFQSK-ESSSV---------LSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ----CEEEEEE-CSSCE---------EEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ----eEEEEec-CCCcE---------EEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 6654433 33332 258999999999999999999999973
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=315.46 Aligned_cols=254 Identities=18% Similarity=0.175 Sum_probs=223.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...+.+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++.+|++|+.||.|+||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEE-eCCCCEEEEEeCCCeEEEE
Confidence 456788999999999999999999999999999999999887 46788899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.+++|+|++..+++++.++.+.+|+......
T Consensus 83 ~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------------- 131 (814)
T 3mkq_A 83 NYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (814)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----------------
T ss_pred ECCCCc--------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----------------
Confidence 999887 4555677889999999999999888777778888887643211
Q ss_pred ccceEEEcccCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC--CCcEEEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQ-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP--QHIVLITG 442 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p--dg~~L~s~ 442 (1395)
....+.+|...|.+++|+| ++ .+|++++.||+|++||++++.....+..+....|.+++|+ | ++.+|+++
T Consensus 132 --~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~ 204 (814)
T 3mkq_A 132 --LEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLPDKPYMITA 204 (814)
T ss_dssp --EEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEEC----CSTTCCEEEEE
T ss_pred --EEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEE----ECCCCCEEEEE
Confidence 1466778999999999999 55 8999999999999999999988888887763489999998 6 89999987
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ .||.|++||+.++ +++.++..|...+. .++|+++|.+|++++.||.|++||+.++.
T Consensus 205 ~-~dg~i~~~d~~~~------------~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 205 S-DDLTIKIWDYQTK------------SCVATLEGHMSNVS---------FAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp C-TTSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred e-CCCEEEEEECCCC------------cEEEEEcCCCCCEE---------EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6 9999999999988 88999988876653 48999999999999999999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=286.64 Aligned_cols=258 Identities=18% Similarity=0.221 Sum_probs=209.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|++++++|++|+.||.|+|||+..+ ....+.+|.+.|++++| +++ +.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW-AHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEe-CCCCCCCEEEEeccCCE
Confidence 356778899999999999999999999999999999999843 46688899999999999 655 899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|||+.++. ...+.....|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 81 v~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------- 138 (379)
T 3jrp_A 81 VLIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------- 138 (379)
T ss_dssp EEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred EEEEEcCCCc------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence 9999999864 2245566678889999999999 777777777888888876543211
Q ss_pred cCccccccceEEEcccCCCeEEEEEec-------------CCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQ-------------WLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHP 422 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafsp-------------dg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~ 422 (1395)
....+.+|...|++++|+| ++ .+|++|+.||.|++||++++. ++..+.+|.+ .
T Consensus 139 --------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~ 208 (379)
T 3jrp_A 139 --------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-W 208 (379)
T ss_dssp --------CEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-C
T ss_pred --------eeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-c
Confidence 1345678999999999999 46 899999999999999998764 5578889987 9
Q ss_pred eeEEEEeecCCCC---CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec--cCcccccccccccceEEEEe
Q 039790 423 VNCVTFLIGPHPQ---HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL--KSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 423 V~sV~fs~~~~pd---g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~--h~~~i~~~~~~~~~~~l~~S 497 (1395)
|++++|+ |+ +.+|++++ .||.|+|||+.+++. ......+.. |... ...++|+
T Consensus 209 v~~~~~s----p~~~~~~~l~s~~-~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~---------v~~~~~s 265 (379)
T 3jrp_A 209 VRDVAWS----PTVLLRSYLASVS-QDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDV---------LWRASWS 265 (379)
T ss_dssp EEEEEEC----CCCSSSEEEEEEE-TTSCEEEEEESSTTS---------CCEEEESSSSCCSSC---------EEEEEEC
T ss_pred EeEEEEC----CCCCCCCeEEEEe-CCCEEEEEeCCCCCc---------cceeeeeccccCCCc---------EEEEEEc
Confidence 9999999 99 88888876 999999999987611 112222222 2222 2358999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++|.+|++++.||.|++|++..+
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999999999999999853
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=310.69 Aligned_cols=316 Identities=11% Similarity=0.050 Sum_probs=211.9
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCce-----EEeccCCCCeEEEEEeeCC------CCEEEEEECCCcEEEEECCCCCCC
Q 039790 225 AVNRNYICYGLKLGNIRILNIITALR-----SLLRGHTQRVTDMAFFAED------VHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 225 Spdg~~LasGs~DG~IrIWd~~~~~~-----~~l~~H~~~V~slaf~s~d------g~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
++++++|++|+.||+|+|||+.++.. ..+.+|.+.|++|+| +++ +.+||+|+.||+|+|||+..+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w-sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW-HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE-CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE-CCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 44455566677899999999987742 356788899999999 554 679999999999999999876522
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
......... ....+..|...+++++|++++ .|++++.++.+.+|+...... ....+.
T Consensus 249 ~~~~~~~~~---p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-------------------~~~~~~ 305 (524)
T 2j04_B 249 VHVFKMCEK---PSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-------------------PSFYDQ 305 (524)
T ss_dssp SSEEECCCS---CSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-------------------CSEEEE
T ss_pred cccceeecC---ceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-------------------ceEEee
Confidence 100000000 112355678899999999864 555555566666666532111 145577
Q ss_pred ccCCCeEEE--EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 374 KHDGEITEL--SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~sl--afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+|.+.|++| +|++++..+||||+.||+|+|||+++++++.++.+|.. ..|.+|+|+ |++..|++++ .|++|+
T Consensus 306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs----p~~~~l~s~~-~d~tv~ 380 (524)
T 2j04_B 306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC----PQIYSYIYSD-GASSLR 380 (524)
T ss_dssp CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE----TTTTEEEEEC-SSSEEE
T ss_pred cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC----CCcCeEEEeC-CCCcEE
Confidence 899999999 56776547999999999999999999998888887753 158999999 9999988866 899999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceee
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDY 530 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~ 530 (1395)
|||++++ .++.++.+|...+. .++|+|+|.+|++|+.|++|++|++..+. +..
T Consensus 381 lwd~~~~------------~~~~~l~gH~~~V~---------sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------~~~ 433 (524)
T 2j04_B 381 AVPSRAA------------FAVHPLVSRETTIT---------AIGVSRLHPMVLAGSADGSLIITNAARRL------LHG 433 (524)
T ss_dssp EEETTCT------------TCCEEEEECSSCEE---------EEECCSSCCBCEEEETTTEEECCBSCSST------TTC
T ss_pred EEECccc------------ccceeeecCCCceE---------EEEeCCCCCeEEEEECCCEEEEEechHhh------ccc
Confidence 9999988 88888988887664 48999999999999999999999986431 111
Q ss_pred eee---eeccccEEEEecCCCCcCcCCCCeEEEEE------c--CCCce--eeecccceEEecCCCCC----eecccCCC
Q 039790 531 IAE---FTVTMPILSLTGTTTDASPDGEHIVQIYC------V--QTQAI--QQYALDLSQCLPPPLEN----AELEKTDS 593 (1395)
Q Consensus 531 i~~---f~~~~~ils~~~~~~d~~~s~dg~V~lWd------v--~t~~i--~~~~~~~~~cl~~s~d~----l~~~~sd~ 593 (1395)
... ......++.+.... ++ +.+++|+ . ....+ ...+...+.|+.|++++ +..+++++
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp-----~g-~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~ 507 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSI-----KD-DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA 507 (524)
T ss_dssp C------CCCCEEEECBCCS-----SS-CEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred cccCccceeeeEEEEeccCC-----CC-CeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence 110 00111233444333 11 1344444 1 12222 22344556788888874 55566677
Q ss_pred ceEEEeecC
Q 039790 594 NATRAFDVA 602 (1395)
Q Consensus 594 ~v~~iWD~~ 602 (1395)
+++|+|++.
T Consensus 508 g~vrlw~l~ 516 (524)
T 2j04_B 508 GLLTLEYLS 516 (524)
T ss_dssp SEEEEEECS
T ss_pred ceEEEEEcc
Confidence 999999974
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=289.31 Aligned_cols=263 Identities=16% Similarity=0.163 Sum_probs=207.8
Q ss_pred CCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECC
Q 039790 215 DPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 215 h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~ 288 (1395)
|...|++++|+++ |++|++|+.||.|+|||+.++ .+..+.+|...|.+++| ++ ++.+|++|+.||+|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF-HPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE-CSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE-CCCCCCEEEEEeCCCeEEEEEee
Confidence 7788999999999 679999999999999999987 46788899999999999 67 89999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEe---cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc------cccCCCCCc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL---ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE------RFSAEEPLK 359 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~---~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~------~~s~~~~~~ 359 (1395)
+++ .+..+ ..+...+.+++|++++..+++++.++.+.+|+........ .+..+....
T Consensus 147 ~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 147 TDT--------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp TTE--------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred cCe--------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 876 33444 5788899999999999988888888888888875421110 111111100
Q ss_pred c--CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--------------eEEecCCCCCCe
Q 039790 360 C--PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP--------------LAVLRPYDGHPV 423 (1395)
Q Consensus 360 ~--~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~--------------l~tl~~h~~~~V 423 (1395)
. .............+|...|.+++|+ + .+|++++.||.|++||++++.. +..+.+|.. .|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 288 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DI 288 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CS
T ss_pred cccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-cE
Confidence 0 0000111244556699999999999 4 7999999999999999988754 888899987 99
Q ss_pred eEEEEeecCCCC--CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc--CcccccccccccceEEEEeCC
Q 039790 424 NCVTFLIGPHPQ--HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK--SSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 424 ~sV~fs~~~~pd--g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h--~~~i~~~~~~~~~~~l~~S~d 499 (1395)
++++|+ |+ +.+|++++ .||.|+|||+.+++. .......+..| ...+ ..++|+++
T Consensus 289 ~~~~~s----~~~~~~~l~~~~-~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~v---------~~~~~s~~ 346 (366)
T 3k26_A 289 WYMRFS----MDFWQKMLALGN-QVGKLYVWDLEVEDP--------HKAKCTTLTHHKCGAAI---------RQTSFSRD 346 (366)
T ss_dssp SCCCCE----ECTTSSEEEEEC-TTSCEEEEECCSSSG--------GGCEEEEECCTTCCSCE---------EEEEECTT
T ss_pred EEEEEc----CCCCCcEEEEEe-cCCcEEEEECCCCCC--------ccccceEEcccccCCce---------EEEEeCCC
Confidence 999999 77 99999876 999999999988711 11245567776 3333 35999999
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 039790 500 GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~ 518 (1395)
|.+|++++.||.|++||+.
T Consensus 347 ~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCeEEEEeCCCEEEEEEec
Confidence 9999999999999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=294.80 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=189.8
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.+++..|++++.|+.|++|++.. + ....+..+.+|.+.|.+++|++++++
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~--------------------~------~~~~~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDG--------------------N------GWKHARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEET--------------------T------EEEECCCBCCCSSCEEEEEECTTTCC
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccC--------------------C------ceEEEEEEecCCceEEEEEEeCCCCE
Confidence 366677788999999999999999331 0 00345567789999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
|++|+.||.|+|||+.++. ...+.+|...|++++| ++++++|++|+.||+|++||+.++.... .
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~ 137 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWW-----------V 137 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEEC-CTTSSCCEEEESSSCEEECCC-----CC-----------C
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEE-CCCCCEEEEEecCCeEEEEEECCcccce-----------e
Confidence 9999999999999999875 6778899999999999 8899999999999999999999875110 1
Q ss_pred EEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+.. |...+.+++|+|++..+++++.++.+.+|+.......... ....+... ......+..+ +|.+.|++++|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~s 214 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP-EASVWGSR-LPFNTVCAEY-PSGGWVHAVGFS 214 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC-CSCSSCSC-CCEEEEEECC-CCSSSEEEEEEC
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc-cccccccc-cchhhhhhcc-cCCceEEEEEEC
Confidence 233444 8899999999999988888888888888887432110000 00000000 0011113444 899999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCce----eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTP----LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|++ .+|++|+.||+|+|||++++.+ +..+.+|.+ .|.+++|+ |+|++|++++ .|+ +.+|+...
T Consensus 215 p~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~l~~~~-~~~-~~~~~~~~ 281 (377)
T 3dwl_C 215 PSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWA----NESAIVAAGY-NYS-PILLQGNE 281 (377)
T ss_dssp TTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEE----ETTEEEEEES-SSS-EEEECCCC
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEc----CCCCEEEEEc-CCc-EEEEEeCC
Confidence 998 8999999999999999999987 888999987 99999999 9999888753 555 45777653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=299.51 Aligned_cols=248 Identities=13% Similarity=0.080 Sum_probs=198.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..+.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| ++++++|++|+.||+|+|||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDW-APKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEE-CTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEE-eCCCCEEEEEeCCCeEEEEEcC
Confidence 4446789999999999999999999999999999986 46688899999999999 8999999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
++.. .........|...+.+++|+|++..+++++.++.+.+|+....... ..
T Consensus 86 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------~~ 137 (377)
T 3dwl_C 86 PDGT-----------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-----------------WV 137 (377)
T ss_dssp ---C-----------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-----------------CC
T ss_pred CCCc-----------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-----------------ee
Confidence 8651 1123445668889999999999988888888888877765432110 01
Q ss_pred eEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------------------CCceeEEecCCCCCCeeEEEEe
Q 039790 369 VQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDR------------------KSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 369 ~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~------------------sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
...+.+ |...|++++|+|++ .+|++|+.||+|++||++ .+.++..+ +|.+ .|++++|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~s 214 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFS 214 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEEC
T ss_pred eeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEEC
Confidence 355666 99999999999998 899999999999999985 35677777 8887 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE----EEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC----TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~----l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
|+|++|++++ .|++|+|||+.++ .+ +.++..|...+. .++|+++|.+|++
T Consensus 215 ----p~~~~l~~~~-~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~~v~---------~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 215 ----PSGNALAYAG-HDSSVTIAYPSAP------------EQPPRALITVKLSQLPLR---------SLLWANESAIVAA 268 (377)
T ss_dssp ----TTSSCEEEEE-TTTEEC-CEECST------------TSCEEECCCEECSSSCEE---------EEEEEETTEEEEE
T ss_pred ----CCCCEEEEEe-CCCcEEEEECCCC------------CCcceeeEeecCCCCceE---------EEEEcCCCCEEEE
Confidence 9999999977 9999999999987 44 777888876553 4899999999999
Q ss_pred EeCCCeEEEEEcC
Q 039790 506 NAKKNAIYAIHMD 518 (1395)
Q Consensus 506 gs~Dg~I~iWdl~ 518 (1395)
++.|+.+ +|+..
T Consensus 269 ~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 269 GYNYSPI-LLQGN 280 (377)
T ss_dssp ESSSSEE-EECCC
T ss_pred EcCCcEE-EEEeC
Confidence 9877766 66655
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=293.51 Aligned_cols=245 Identities=8% Similarity=-0.002 Sum_probs=192.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEE-----------cCCeEEEEECCCCc--eE--------EeccCCCCeEEEEEeeCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGL-----------KLGNIRILNIITAL--RS--------LLRGHTQRVTDMAFFAED 269 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs-----------~DG~IrIWd~~~~~--~~--------~l~~H~~~V~slaf~s~d 269 (1395)
.+.+|.+.|.++++ +++++++|+ .|+.||+|++.... +. ....+...+.+++| ++|
T Consensus 68 ~l~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f-SpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI-SRE 144 (365)
T ss_dssp ECCTTSCCCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE-CTT
T ss_pred EccCCCCceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE-cCC
Confidence 46678888887655 566777664 47889999987641 11 12345567999999 999
Q ss_pred CCEEEEE--ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC
Q 039790 270 VHLLASA--SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 270 g~~LaSg--s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~ 347 (1395)
|++|+++ +.|++|+|||+.++. .+..+. +...|.+++|+|++.. ++++.++.+++||.....
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~--------------~~~~~~-~~~~V~~v~fspdg~~-l~s~s~~~~~~~~~~~~~ 208 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLT--------------EKFEIE-TRGEVKDLHFSTDGKV-VAYITGSSLEVISTVTGS 208 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTE--------------EEEEEE-CSSCCCEEEECTTSSE-EEEECSSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEeECCCCc--------------EEEEeC-CCCceEEEEEccCCce-EEeccceeEEEEEeccCc
Confidence 9997755 478999999999876 222333 5667999999999974 555668888888875432
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCce----eEEecCCC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG----TVKIWDDRKSTP----LAVLRPYD 419 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~----l~tl~~h~ 419 (1395)
.. ......+|...|++++|+|++ .++++++.|+ ++++||+..+.. ...+.+|.
T Consensus 209 ~~------------------~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 209 CI------------------ARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF 269 (365)
T ss_dssp EE------------------EEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred ce------------------eeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence 21 022345688899999999998 8999999887 689999887643 45677888
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
. .|++|+|+ |||++|++++ .|++|+|||+.++ +++.++ .+|...+. .++|+|
T Consensus 270 ~-~V~~~~~S----pdg~~lasgs-~D~~V~iwd~~~~------------~~~~~~~~gH~~~V~---------~v~fSp 322 (365)
T 4h5i_A 270 K-GITSMDVD----MKGELAVLAS-NDNSIALVKLKDL------------SMSKIFKQAHSFAIT---------EVTISP 322 (365)
T ss_dssp S-CEEEEEEC----TTSCEEEEEE-TTSCEEEEETTTT------------EEEEEETTSSSSCEE---------EEEECT
T ss_pred C-CeEeEEEC----CCCCceEEEc-CCCEEEEEECCCC------------cEEEEecCcccCCEE---------EEEECC
Confidence 7 99999999 9999999976 9999999999988 898886 67877664 499999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 039790 499 AGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||.+|++|+.|++|+||++..+
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=277.12 Aligned_cols=284 Identities=15% Similarity=0.129 Sum_probs=217.6
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRF 282 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV 282 (1395)
..+.+|.+.|++++|++++++|++|+.||.|+|||+.++ ....+.+|...|++++| ++ ++.+|++|+.||+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-ASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE-CCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEE-cCCCCCCEEEEEcCCCeE
Confidence 456789999999999999999999999999999999875 45677899999999999 55 69999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++||+.++.... .......+..+..|...+.+++|+|+ +..+++++.++.+.+|+.........+.......
T Consensus 84 ~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~- 157 (351)
T 3f3f_A 84 KLWEEDPDQEEC-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK- 157 (351)
T ss_dssp EEEEECTTSCTT-----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE-
T ss_pred EEEecCCCcccc-----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc-
Confidence 999999875221 11223456667788899999999999 8778887888888888765433211111000000
Q ss_pred CccccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCce--eEEecCCCCCCeeEEEEeecCCCCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRKSTP--LAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~sg~~--l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.......+|...+.+++|+|+ ++.+|++++.|+.+.+|+...+.. +..+.+|.+ .|++++|+ |++
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~----p~~ 226 (351)
T 3f3f_A 158 ------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWA----PSI 226 (351)
T ss_dssp ------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEEC----CCS
T ss_pred ------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEEC----CCC
Confidence 000112368889999999997 238999999999999998888765 778889987 99999999 888
Q ss_pred ----cEEEEEecCCCeEEEEECCCCCCCCC----------------------------------CCCcccccEEEEEecc
Q 039790 437 ----IVLITGGPLNRELKIWASAEEEGWLL----------------------------------PSDIESWKCTQTLELK 478 (1395)
Q Consensus 437 ----~~L~s~Gs~Dg~I~IWDl~tg~~~~~----------------------------------~~~~~~~~~l~tl~~h 478 (1395)
.+|++++ .||.|+|||++.+..... ..+....+++..+.+|
T Consensus 227 ~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 227 GRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 7888866 999999999986411000 0011233667777777
Q ss_pred CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...+. .++|+++|.+|++++.||.|++|++.++.
T Consensus 306 ~~~v~---------~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 306 NGEVW---------SVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCEE---------EEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccEE---------EEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 76554 49999999999999999999999998864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=281.55 Aligned_cols=298 Identities=11% Similarity=0.114 Sum_probs=217.5
Q ss_pred eeeCCCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCCc-eEEecc-----CCCCeEEEEEeeCC----CCEEEEE
Q 039790 211 KYISDPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITAL-RSLLRG-----HTQRVTDMAFFAED----VHLLASA 276 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~~-~~~l~~-----H~~~V~slaf~s~d----g~~LaSg 276 (1395)
...+|.+.|++++|+|+ ..++++++.++.|+|||+.++. +..+.. |...|++++| +++ +.+|++|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW-TYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE-EECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe-ccCCCCCCCEEEEe
Confidence 34489999999999984 5567777777899999999763 444433 6688999999 677 6799999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.||.|++||+.+++ .+..+..|...+.+++|+| ++..+++++.++.+.+|+......
T Consensus 92 ~~dg~i~v~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------- 150 (366)
T 3k26_A 92 GSRGIIRIINPITMQ--------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------- 150 (366)
T ss_dssp ETTCEEEEECTTTCC--------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-------
T ss_pred cCCCEEEEEEchhce--------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-------
Confidence 999999999999877 4555667889999999999 676666666777787777643211
Q ss_pred CCCccCccccccceEEE---cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec----------------
Q 039790 356 EPLKCPVDELINGVQLV---GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---------------- 416 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l---~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---------------- 416 (1395)
...+ .+|...|++++|+|++ .+|++++.||.|++||+++++.+..+.
T Consensus 151 -------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 151 -------------VAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp -------------EEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred -------------EEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 3444 5799999999999998 899999999999999999876554433
Q ss_pred ------------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC--CCCcccccEEEEEeccCccc
Q 039790 417 ------------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL--PSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 417 ------------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~--~~~~~~~~~l~tl~~h~~~i 482 (1395)
+|.+ .|.+++|+ +.+|++++ .|+.|++||+.++..... ........++..+..|...+
T Consensus 217 ~~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRN-YVDCVRWL------GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp EEECCCSEEECSSCSS-CCCEEEEE------TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred eeeccCccccccCCcc-eEEEEEEc------CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 3887 99999996 56888866 999999999987732111 11222335678888887665
Q ss_pred ccccccccceEEEEeCC--CCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc---ccEEEEecCCC-CcC--cCC
Q 039790 483 LRLEDAFFNQVVALNRA--GLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT---MPILSLTGTTT-DAS--PDG 554 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~---~~ils~~~~~~-d~~--~s~ 554 (1395)
.. ++|+++ |.+|++|+.||.|++||+..+... ...+..+..+ ..+..+..... ..+ ++.
T Consensus 289 ~~---------~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 289 WY---------MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH----KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp SC---------CCCEECTTSSEEEEECTTSCEEEEECCSSSGG----GCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EE---------EEEcCCCCCcEEEEEecCCcEEEEECCCCCCc----cccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 44 788888 999999999999999999875421 1122223222 34444443330 112 345
Q ss_pred CCeEEEEEcCC
Q 039790 555 EHIVQIYCVQT 565 (1395)
Q Consensus 555 dg~V~lWdv~t 565 (1395)
||.|+|||+++
T Consensus 356 dg~i~iwd~~~ 366 (366)
T 3k26_A 356 DASIWRWDRLR 366 (366)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEecC
Confidence 67777777653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=283.02 Aligned_cols=332 Identities=16% Similarity=0.157 Sum_probs=214.8
Q ss_pred cceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCce-EEe-------------ccCCCCeEEEEEeeC-CC
Q 039790 207 TPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITALR-SLL-------------RGHTQRVTDMAFFAE-DV 270 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~-~~l-------------~~H~~~V~slaf~s~-dg 270 (1395)
.....+.+|.+.|++++|++ ++++|++|+.||.|+|||+.++.. ..+ .+|...|.+++| ++ ++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 112 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW-YPHDT 112 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE-CTTCT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE-ccCCC
Confidence 45567788999999999999 999999999999999999998632 111 359999999999 66 88
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC---eEEEEEeCCeEEEEEcCCCC
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ---EILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~---~lla~g~~~~ii~~d~~~~~ 347 (1395)
.+|++|+.||.|++||+.++. .+..+. +...+.++.|++.+. .+++++.++.+.+|+.....
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQ--------------TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEeCCCeEEEeeCCCCc--------------cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 899999999999999999876 222222 456778899988654 67777777778777764321
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEe-----------
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVL----------- 415 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl----------- 415 (1395)
.+..+.+|.+.|++++|+|++..+|++|+.||.|++||++++. ++..+
T Consensus 178 --------------------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 178 --------------------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp --------------------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred --------------------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 1566778999999999999985579999999999999999875 56665
Q ss_pred ----cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccc
Q 039790 416 ----RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 416 ----~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
.+|.+ .|++++|+ |++.+|++++ .||.|++||+.++ +....+..+...... ....
T Consensus 238 ~~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~---~~~~ 296 (408)
T 4a11_B 238 ESANTAHNG-KVNGLCFT----SDGLHLLTVG-TDNRMRLWNSSNG------------ENTLVNYGKVCNNSK---KGLK 296 (408)
T ss_dssp TTSSCSCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTC------------CBCCCCCCCCCCCCS---SCCC
T ss_pred ccccccccC-ceeEEEEc----CCCCEEEEec-CCCeEEEEECCCC------------ccceecccccccccc---ccce
Confidence 56776 99999999 9999999977 9999999999987 333222222111100 0011
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCcee
Q 039790 492 QVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 492 ~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~ 569 (1395)
.......+..+++++.|+.|++||+..+. .+..+..+......+.|.... ..+ .+.||.|++|++.+++..
T Consensus 297 -~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 297 -FTVSCGCSSEFVFVPYGSTIAVYTVYSGE-----QITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp -CEECCSSSSCEEEEEETTEEEEEETTTCC-----EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC----
T ss_pred -eEEecCCCceEEEEecCCEEEEEECcCCc-----ceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCcc
Confidence 12333445666677889999999998754 222222222222223343332 222 457999999999998654
Q ss_pred eeccc---ceEEecCCCCCeecccCCCceEEEeecCC
Q 039790 570 QYALD---LSQCLPPPLENAELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 570 ~~~~~---~~~cl~~s~d~l~~~~sd~~v~~iWD~~t 603 (1395)
..... ...+.+...+.+.... +.+.+++|+...
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~ 405 (408)
T 4a11_B 370 PDDDETTTKSQLNPAFEDAWSSSD-EEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------------------
T ss_pred CCCCceEeccccccccceeecccC-ccCceeecCCcc
Confidence 32111 1112222223344444 446667998753
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-27 Score=269.14 Aligned_cols=281 Identities=16% Similarity=0.243 Sum_probs=225.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+++++. ..|++| .|++|++||... |+.+ .+..+.+|...|++++|++++++|
T Consensus 31 l~WS~~-~~lAvg-~D~tV~iWd~~t--g~~~------------------------~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 31 VDWSSG-NVLAVA-LDNSVYLWSASS--GDIL------------------------QLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTT--CCEE------------------------EEEECCSTTCCEEEEEECTTSSEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCC--CCEE------------------------EEEEecCCCCeEEEEEECCCCCEE
Confidence 445544 355554 599999999541 2111 122345788899999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||+|+|||+.++. +..+.+|...+.++.+ ++.+|++|+.++.+++|+...+. ..+...
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~-------------~~~~~~ 146 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAE-------------HHVATL 146 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCc-------------eeEEEE
Confidence 999999999999999984 7788999999988777 57899999999999999998765 144556
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+..+.|++++..+++++.++.+.+|+....... .........|.+.|.+++|++++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------WVPLQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB----------------SCCSEEECCCCSCEEEEEECTTSTT
T ss_pred cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc----------------ccceeeecccCCceEEEEecCCCCc
Confidence 678888999999999998888888888888876542211 0114556678899999999998866
Q ss_pred EE--EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RL--ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~L--aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
++ ++++.+++|++||.+.+........+. .+..+.|+ +++..++++ |+.|+.|+|||+.++
T Consensus 211 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~--~v~~~~~~----~~~~~~~~~sg~~d~~i~iwd~~~~---------- 274 (318)
T 4ggc_A 211 VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS----PHYKELISGHGFAQNQLVIWKYPTM---------- 274 (318)
T ss_dssp EEEEEECTTTCEEEEEETTTCCEEEEEECSS--CEEEEEEE----TTTTEEEEEECTTTCCEEEEETTTC----------
T ss_pred EEEEEecCCCCEEEEEeccccccccccccee--eeeeeeec----ccccceEEEEEcCCCEEEEEECCCC----------
Confidence 55 456778999999999998877776543 79999999 888887764 457999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++.+|.+|.+.+.. ++|+++|.+|++|+.|++|+|||+..
T Consensus 275 --~~~~~l~gH~~~V~~---------l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 --AKVAELKGHTSRVLS---------LTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --CEEEEECCCSSCEEE---------EEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999877644 99999999999999999999999865
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=283.95 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=196.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+|...+.+..++.++..+++++.||.|+|||+.++. ...+. .|...|.+++| ++++.+|++|+.||.|++||+.+++
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKW-SHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEE-CCCCCEEEEECCCCeEEEEECcCCe
Confidence 454443333344445668888999999999999985 33333 38999999999 8899999999999999999999877
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+..+..|...+.+++|+ +..+++++.++.+.+|+...... ....
T Consensus 168 --------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~ 212 (401)
T 4aez_A 168 --------------KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH-------------------QIGT 212 (401)
T ss_dssp --------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC-------------------EEEE
T ss_pred --------------EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc-------------------eeeE
Confidence 455666888899999994 45666666677777777643221 1566
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I 449 (1395)
+.+|.+.|.+++|+|++ .+|++|+.||.|++||++++.++..+.+|.+ .|.+++|+ |++..++++|+ .|+.|
T Consensus 213 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~----p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWC----PWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEEC----TTSTTEEEEECCTTTCEE
T ss_pred EcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEEC----CCCCCEEEEecCCCCCEE
Confidence 77899999999999988 8999999999999999999999999999987 99999999 88876666653 69999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE--EeCCCeEEEEEcCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKNAIYAIHMDYG 520 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg~I~iWdl~~g 520 (1395)
++||+.++ +++..+..+. .+ ..++|+++|.+|++ |+.||.|++|++..+
T Consensus 287 ~i~d~~~~------------~~~~~~~~~~-~v---------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 287 HFWNAATG------------ARVNTVDAGS-QV---------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EEEETTTC------------CEEEEEECSS-CE---------EEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EEEECCCC------------CEEEEEeCCC-cE---------EEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 99999988 8888886433 22 35999999999999 448999999999764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=303.68 Aligned_cols=259 Identities=10% Similarity=0.049 Sum_probs=190.8
Q ss_pred eeeeCCCCCEEEEEEecC------CCEEEEEEcCCeEEEEECCCCc------------eEEeccCCCCeEEEEEeeCCCC
Q 039790 210 TKYISDPGLVLGRQIAVN------RNYICYGLKLGNIRILNIITAL------------RSLLRGHTQRVTDMAFFAEDVH 271 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spd------g~~LasGs~DG~IrIWd~~~~~------------~~~l~~H~~~V~slaf~s~dg~ 271 (1395)
..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ...+.+|...|++++| +++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~-s~~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF-LSP-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE-SSS-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe-cCC-C
Confidence 446678899999999996 5799999999999999998652 2367899999999999 554 5
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEE--EEeCCCCeEEEEEe-CCeEEEEEcCCCCc
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRV--CWHPHKQEILMLAI-GNRILKIDSNRVGK 348 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v--~~sp~~~~lla~g~-~~~ii~~d~~~~~~ 348 (1395)
+|++|+.||+|++||+.++.. ....+..|...|.+| +|++++..+|++++ ++.+.+||... ++
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~-------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~ 344 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEV-------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IA 344 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSS-------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HH
T ss_pred eEEEEeCCCEEEEEECCCCCC-------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CC
Confidence 899999999999999987641 123355788889998 46676634555555 55555555432 21
Q ss_pred cccccCCCCCccCccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
. ...+.+|.. .|++++|+|++ ..|++++.|++|++||++++.++.++.+|.+ .|++|
T Consensus 345 ~-------------------~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sv 403 (524)
T 2j04_B 345 T-------------------TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAI 403 (524)
T ss_dssp H-------------------HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEE
T ss_pred c-------------------ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEE
Confidence 1 223445543 58899999998 7899999999999999999999999999998 99999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC---------------CCC-C-Cc---------------ccccEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW---------------LLP-S-DI---------------ESWKCTQT 474 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~---------------~~~-~-~~---------------~~~~~l~t 474 (1395)
+|+ |+|++|++++ .|++|+|||+...--. .+. + +. ....++.+
T Consensus 404 a~S----p~g~~l~Sgs-~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~ 478 (524)
T 2j04_B 404 GVS----RLHPMVLAGS-ADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAK 478 (524)
T ss_dssp ECC----SSCCBCEEEE-TTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC----------
T ss_pred EeC----CCCCeEEEEE-CCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceee
Confidence 999 9999999976 9999999997543000 000 0 00 01234445
Q ss_pred EeccCcccccccccccceEEEEeCCCC---EEEEEeCCCeEEEEEcCC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGL---FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~---~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+|...+. .++|+|++. +|++|+.||.|+||++..
T Consensus 479 l~gh~~~V~---------~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 479 IDAHGINIT---------CTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---CCCSCC---------CEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecCCCceEE---------EEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 555554433 489999964 999999999999999865
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=286.99 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=222.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.+++..|++++.||.|++||.. .+..+..+.+|.+.|.+++| ++++|
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~----------------------------~~~~~~~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKN----------------------------TLECKRILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESS----------------------------SCCEEEEECCCSSCEEEEEC--CSSEE
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCC----------------------------CCeEEEEEcCCCCcEEEEEE--CCCEE
Confidence 4455677899999999999999943 12345667789999999988 89999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ ....+.+|...|.+++| ++.+|++|+.||+|++||+.++.. +......
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~ 252 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVL 252 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC---CTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE---cCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEe
Confidence 99999999999999987 47788999999999999 356999999999999999998762 2234566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+.++.| ++..+++++.++.+.+|+.... . .+..+.+|...|.+++|+ + .
T Consensus 253 ~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~-------------------~~~~~~~~~~~v~~~~~~--~-~ 307 (435)
T 1p22_A 253 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-E-------------------FVRTLNGHKRGIACLQYR--D-R 307 (435)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-C-------------------EEEEEECCSSCEEEEEEE--T-T
T ss_pred cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-c-------------------EEEEEcCCCCcEEEEEeC--C-C
Confidence 778888989998 5666777777777777776432 1 156677899999999995 4 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+|++|+.||+|++||+++++++.++.+|.+ .|.+++|. +.+|++++ .||.|+|||+.++... .......
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~------~~~l~sg~-~dg~i~vwd~~~~~~~---~~~~~~~ 376 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD------NKRIVSGA-YDGKIKVWDLVAALDP---RAPAGTL 376 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEECC------SSEEEEEE-TTSCEEEEEHHHHTST---TSCTTTT
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEeCCcC-cEEEEEec------CCEEEEEe-CCCcEEEEECCCCCCc---cccccch
Confidence 999999999999999999999999999997 99999984 77888876 9999999999776110 0011123
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++.++..|...+.. +.| ++.+|++++.||.|++||+..+.
T Consensus 377 ~~~~~~~h~~~v~~---------l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 377 CLRTLVEHSGRVFR---------LQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEECCCSSCCCC---------EEE--CSSCEEECCSSSEEEEEC-----
T ss_pred heeeccCCCCCeEE---------EEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 88899988877644 666 78999999999999999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=289.03 Aligned_cols=275 Identities=12% Similarity=0.126 Sum_probs=204.7
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc------------eEEeccCC------------CCeEEEEEeeCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL------------RSLLRGHT------------QRVTDMAFFAEDV 270 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~------------~~~l~~H~------------~~V~slaf~s~dg 270 (1395)
|.+.|++++|+++|++||+|+.||.|+|||+.++. ...+.+|. +.|++++| ++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-LPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-CCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE-cCCC
Confidence 56899999999999999999999999999998764 66888998 88999999 7777
Q ss_pred --CEEEEEECCCcEEEEECCCCCCCCC---------------------Cccccc-ce---EEEE-EEecCCCCCccEEEE
Q 039790 271 --HLLASASVDGRFFIWNITEGPDEED---------------------KPQILG-KI---VVAI-QILADGDSVHPRVCW 322 (1395)
Q Consensus 271 --~~LaSgs~DgtV~IWdl~tg~~~~~---------------------~~~~~~-~~---i~~l-~~~~~~~~~v~~v~~ 322 (1395)
.+|++|+.||+|++||+.++..... ++.... .. .... .+...|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999986431000 000000 00 0111 224678899999999
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
+|++..++++ .++.+.+|+....+..... .. .....+.+|...|++++|+|++..+|++|+.||+|+
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----------~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNI----------VD--IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEE----------EE--CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeee----------ee--cccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 9998766665 7777777776422211000 00 000024579999999999999767999999999999
Q ss_pred EEeCCCCce----eEEecCCCC-----------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC-CCCCCCCCCc
Q 039790 403 IWDDRKSTP----LAVLRPYDG-----------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE-EEGWLLPSDI 466 (1395)
Q Consensus 403 IWDl~sg~~----l~tl~~h~~-----------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t-g~~~~~~~~~ 466 (1395)
+||++++.. +..+.+|.. ..|.+++|+ |+|++|++++ . +.|+|||+++ +
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~-~-~~v~iwd~~~~~--------- 317 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS----HSGRYMMTRD-Y-LSVKVWDLNMEN--------- 317 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC----TTSSEEEEEE-S-SEEEEEETTCCS---------
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC----CCCCEEEEee-C-CeEEEEeCCCCc---------
Confidence 999999987 789988863 279999999 9999999876 6 9999999987 5
Q ss_pred ccccEEEEEeccCcccccc------cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRL------EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~------~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++.++..|....... ...+-...++|+++|.+|++|+.||.|++||+..++
T Consensus 318 ---~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 318 ---RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp ---SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ---cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 7777888875432210 000001138999999999999999999999998864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=283.28 Aligned_cols=239 Identities=16% Similarity=0.242 Sum_probs=201.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
...+|...|+|+.| ++++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++|++|+.||+|++||+.+
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCC
Confidence 33457778998766 8999999999999999999987 47788999999999999 789999999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
++ .+..+..|...+.+++|++ +.+++++.++.+.+|+...... ....
T Consensus 203 ~~--------------~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~ 249 (435)
T 1p22_A 203 GE--------------MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD-----------------ITLR 249 (435)
T ss_dssp CC--------------EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC-----------------CEEE
T ss_pred Cc--------------EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC-----------------ceee
Confidence 87 4556667888899999964 4677777777777777643221 0113
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
..+.+|...|.+++| ++ .+|++|+.||+|++||+++++++.++.+|.+ .|.++.|. +.+|++++ .||.|
T Consensus 250 ~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~g~-~dg~i 318 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR------DRLVVSGS-SDNTI 318 (435)
T ss_dssp EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE------TTEEEEEE-TTSCE
T ss_pred eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC------CCEEEEEe-CCCeE
Confidence 667889999999999 45 7999999999999999999999999999987 99999996 57888876 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++||++++ +++.++.+|...+.. +.| ++.+|++|+.||.|++||+..+.
T Consensus 319 ~iwd~~~~------------~~~~~~~~h~~~v~~---------~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 319 RLWDIECG------------ACLRVLEGHEELVRC---------IRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEETTTC------------CEEEEECCCSSCEEE---------EEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEEECCCC------------CEEEEEeCCcCcEEE---------EEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 99999988 999999988766432 455 89999999999999999997654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=271.92 Aligned_cols=245 Identities=14% Similarity=0.139 Sum_probs=193.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+++++..|++++.|++|++|++... ....+..+.+|.+.|++++|++ +++
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeEEEEecCCCcCC
Confidence 567778899999999999999994310 1135677889999999999986 489
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||+|+|||+.++ ....+.+|...|.+++| +++ +.+|++|+.||+|++||+.++...
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------- 136 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPMLLVASSDGKVSVVEFKENGTT----------- 136 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEEBCSSSCB-----------
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe-CcCCCCcEEEEEECCCcEEEEEecCCCce-----------
Confidence 9999999999999999886 45678899999999999 665 889999999999999999876310
Q ss_pred EEEEEecCCCCCccEEEEeCCC-------------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHK-------------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~-------------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
....+..|...+.+++|+|++ ..+++++.++.+.+|+....... ......
T Consensus 137 -~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------------~~~~~~ 199 (297)
T 2pm7_B 137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 199 (297)
T ss_dssp -CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------------EEEEEE
Confidence 012345678889999999973 45555566667777765332110 011456
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc---eeEEe--cCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST---PLAVL--RPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~---~l~tl--~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|.+.|++++|+|++ +.+|++|+.|++|+|||++.+. ....+ .+|.+ .|++++|+ |+|++|++++
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~g~~las~~- 273 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 273 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEEC----SSSCCEEEEE-
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEEC----CCCCEEEEEc-
Confidence 78999999999999985 4799999999999999998753 22334 46766 89999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|++|+||+....
T Consensus 274 ~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 274 GDNKVTLWKENLE 286 (297)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCcEEEEEECCC
Confidence 9999999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=276.61 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=201.7
Q ss_pred CCCCCEEEEEEecC---CCEEEEEEcCCeEEEEECCCC--ceEEeccCCCCeEEEEEe-----eCCCCEEEEEECCCcEE
Q 039790 214 SDPGLVLGRQIAVN---RNYICYGLKLGNIRILNIITA--LRSLLRGHTQRVTDMAFF-----AEDVHLLASASVDGRFF 283 (1395)
Q Consensus 214 ~h~~~V~~va~Spd---g~~LasGs~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~-----s~dg~~LaSgs~DgtV~ 283 (1395)
+|...|.+++|+++ |++|++|+.||.|++||+.++ ....+.+|...|.+++|. ++++++|++|+.||+|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999998 799999999999999999986 477899999999999763 57899999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEE----EeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVC----WHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~----~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+||+.++.. .+..+... +.....+.+++ |++++..+++++.++.+.+|+.....
T Consensus 143 vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------- 201 (357)
T 3i2n_A 143 VWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----------- 201 (357)
T ss_dssp EECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----------
T ss_pred EEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----------
Confidence 999998751 11111111 11234677777 67888877777777888777764321
Q ss_pred ccCccccccceEEEcccCCCeEEEEEec---CCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCCCeeEEEEee
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQ---WLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGHPVNCVTFLI 430 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafsp---dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~~V~sV~fs~ 430 (1395)
......|...|++++|+| ++ .+|++|+.||.|++||++++.++..+. +|.. .|++++|+
T Consensus 202 ----------~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~- 268 (357)
T 3i2n_A 202 ----------LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHL- 268 (357)
T ss_dssp ----------EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEE-
T ss_pred ----------eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEEC-
Confidence 233456889999999999 77 899999999999999999887665554 8987 99999999
Q ss_pred cCCCCCc-EEEEEecCCCeEEEEECCCCCCCCC-------CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 431 GPHPQHI-VLITGGPLNRELKIWASAEEEGWLL-------PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 431 ~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~-------~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
|++. +|++++ .||.|+|||++.+..... ......++++..+..|...+. .++|+++|.+
T Consensus 269 ---~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s~~~~~ 335 (357)
T 3i2n_A 269 ---PQNRELFLTAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS---------SLDWSPDKRG 335 (357)
T ss_dssp ---TTEEEEEEEEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE---------EEEECSSSTT
T ss_pred ---CCCCcEEEEEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee---------EEEEcCCCCe
Confidence 9998 677655 999999999987622110 001123367888888876654 4999999998
Q ss_pred EE-EEeCCCeEEEEEcCCC
Q 039790 503 LL-ANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 503 La-Sgs~Dg~I~iWdl~~g 520 (1395)
|+ +++.|+.|++|++...
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 88 8999999999999764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=278.95 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=194.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEE-EEEEc---CCeEEEEECCCCce--EEeccCCCCeEEEEEeeCC---CCEEEEEECCC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYI-CYGLK---LGNIRILNIITALR--SLLRGHTQRVTDMAFFAED---VHLLASASVDG 280 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~L-asGs~---DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~d---g~~LaSgs~Dg 280 (1395)
..+.+|...|.+++|+|++.++ ++|+. ||.|+|||+.++.. ....+|...|.+++| +++ +.+|++|+.||
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF-GATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEEC-TTCCTTTCCEEEEETTS
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEE-cCCCCCCceEEEecCCC
Confidence 3457899999999999999655 56665 99999999998853 334479999999999 777 79999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE------eCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW------HPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~------sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
.|++||+.++.. .+..+..|...+.++.| ++++..+++++.++.+.+|+.......
T Consensus 91 ~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----- 152 (357)
T 3i2n_A 91 NLHIWNLEAPEM-------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----- 152 (357)
T ss_dssp CEEEECTTSCSS-------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-----
T ss_pred eEEEEeCCCCCc-------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-----
Confidence 999999998651 12345577888888855 577877777777778887776443211
Q ss_pred CCCCccCccccccceEEEcccCC----CeEEEE----EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 355 EEPLKCPVDELINGVQLVGKHDG----EITELS----MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~----~V~sla----fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
...+..|.+ .|++++ |++++ .+|++|+.||.|++||+++++++.. ..|.. .|.++
T Consensus 153 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~-~v~~~ 215 (357)
T 3i2n_A 153 --------------VANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKN-GVCSL 215 (357)
T ss_dssp --------------SEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSS-CEEEE
T ss_pred --------------ceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCC-ceEEE
Confidence 344444443 899998 67887 8999999999999999999987555 45666 89999
Q ss_pred EEeecCCC---CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE-----EeccCcccccccccccceEEEEeC
Q 039790 427 TFLIGPHP---QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT-----LELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 427 ~fs~~~~p---dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t-----l~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+|+ | ++.+|++++ .||.|++||++++ +++.. +..|...+. .+.|++
T Consensus 216 ~~~----~~~~~~~~l~~~~-~dg~i~i~d~~~~------------~~~~~~~~~~~~~~~~~v~---------~~~~~~ 269 (357)
T 3i2n_A 216 EFD----RKDISMNKLVATS-LEGKFHVFDMRTQ------------HPTKGFASVSEKAHKSTVW---------QVRHLP 269 (357)
T ss_dssp EES----CSSSSCCEEEEEE-STTEEEEEEEEEE------------ETTTEEEEEEEECCSSCEE---------EEEEET
T ss_pred EcC----CCCCCCCEEEEEC-CCCeEEEEeCcCC------------CcccceeeeccCCCcCCEE---------EEEECC
Confidence 999 8 899999976 9999999999876 33333 336665543 489999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++. +|++++.||.|++||+..+.
T Consensus 270 ~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 270 QNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp TEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCcEEEEEeCCCcEEEeecCCCc
Confidence 998 89999999999999998754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=276.26 Aligned_cols=308 Identities=10% Similarity=0.033 Sum_probs=220.2
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.+ .+..|++++.||.|++|++.............+.. .......+|...|.+++|++ ++.
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS---------------IGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE---------------ECTTCTTCCSSCEEEEEECTTCTT
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc---------------ccccccccCCCcEEEEEEccCCCc
Confidence 56667 78999999999999999955221111110000000 00112346899999999999 788
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||.|++||+.++.......|...+.+++| .+ ++.+|++|+.||.|++||+.++. .
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------~ 178 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM-SPVSTKHCLVAVGTRGPKVQLCDLKSGS--------------C 178 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE-CSSCSSCCEEEEEESSSSEEEEESSSSC--------------C
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEe-ecCCCCCcEEEEEcCCCeEEEEeCCCcc--------------e
Confidence 999999999999999999875555568889999999 55 45599999999999999999876 2
Q ss_pred EEEecCCCCCccEEEEeCCCCeEE-EEEeCCeEEEEEcCCCCccc-cccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEIL-MLAIGNRILKIDSNRVGKGE-RFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~ll-a~g~~~~ii~~d~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
+..+..|...+.+++|+|++..++ +++.++.+.+|+........ .+..... .........+.+|...|++++|
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG-----KKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT-----CSCCCTTTSSCSCSSCEEEEEE
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc-----ccceeeccccccccCceeEEEE
Confidence 344567888999999999999755 55556667767664432110 0000000 0000001223579999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+|++ .+|++++.||.|++||+++++....+.++.. ..+...... ..+..+++++ .|+.|++||+.++
T Consensus 254 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~i~v~d~~~~--- 324 (408)
T 4a11_B 254 TSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC----GCSSEFVFVP-YGSTIAVYTVYSG--- 324 (408)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC----SSSSCEEEEE-ETTEEEEEETTTC---
T ss_pred cCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec----CCCceEEEEe-cCCEEEEEECcCC---
Confidence 9998 8999999999999999999887665543321 012222222 3344555555 7999999999988
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++..+.+|...+. .++|+++|.+|++++.||.|++|++..++
T Consensus 325 ---------~~~~~~~~~~~~v~---------~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 325 ---------EQITMLKGHYKTVD---------CCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ---------CEEEEECCCSSCEE---------EEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ---------cceeeeccCCCeEE---------EEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 89999998887654 49999999999999999999999998865
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-26 Score=273.65 Aligned_cols=239 Identities=15% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
-++..++||.+ ++||+|. |++|+|||..++. .. .+.+|.+.|++|+| +++|++|++|+.||+|+|||+.+++
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~f-spdg~~lasgs~Dg~v~iWd~~~~~-- 180 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQK-- 180 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEE-CCCCCEEEEEECCCeEEEEEcCCCc--
Confidence 35677899975 5888876 8999999999985 33 44578889999999 8999999999999999999999876
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+..+..|...+.++.|++ ..+++++.++.+..|+...... .+..+.
T Consensus 181 ------------~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~-------------------~~~~~~ 227 (420)
T 4gga_A 181 ------------RLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH-------------------HVATLS 227 (420)
T ss_dssp ------------EEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC-------------------EEEEEE
T ss_pred ------------EEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce-------------------eeEEec
Confidence 5566777888887777753 4455555555666665433221 156778
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCCcEE-EE-EecCCC
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQHIVL-IT-GGPLNR 447 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L-~s-~Gs~Dg 447 (1395)
+|...+..+.|++++ .+|++++.||.|+|||..+++ .+..+..|.+ .|.+++|+ |++..+ ++ +|+.|+
T Consensus 228 ~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~----p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 228 GHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWC----PWQSNVLATGGGTSDR 301 (420)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEEC----TTCTTEEEEEECTTTC
T ss_pred ccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeC----CCcccEEEEEeecCCC
Confidence 899999999999998 899999999999999998764 4677888887 99999999 766544 44 356899
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCCCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDYGP 521 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~g~ 521 (1395)
+|+|||+.++ .++..+..+... ..+.|++++..|++++ .|+.|+|||+.++.
T Consensus 302 ~I~iwd~~t~------------~~~~~~~~~~~v----------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 302 HIRIWNVCSG------------ACLSAVDAHSQV----------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEEEETTTT------------EEEEEEECSSCE----------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred EEEEEeCCcc------------ccceeeccccce----------eeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999998 888888776532 2478889999887765 79999999997753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=278.41 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=217.6
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEEcCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGLKLG 238 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG 238 (1395)
.+++++.||.|++|++.. .|+ ....+..+.+|.+.|++++|++ ++++|++|+.||
T Consensus 49 ~~~~~~~~g~i~v~~~~~-~~~-----------------------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGK-TGR-----------------------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp EEBCCSSSCCEEEEETTC-CEE-----------------------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEEEcCCCEEEEEECcc-CCC-----------------------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence 444678899999999431 110 0123456788999999999999 999999999999
Q ss_pred eEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 239 NIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 239 ~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
.|+|||+.++ ....+.+|...|.+++| ++++ ++|++|+.||+|+|||+.+++ .+..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~ 169 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGA--------------AVLT 169 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE-CSSBTTEEEEEETTSCEEEEETTTTE--------------EEEE
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEE-CcCCCCEEEEEcCCCEEEEEECCCCC--------------ccEE
Confidence 9999999885 36788999999999999 7887 799999999999999999876 4445
Q ss_pred e--cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCC-eEEEEEe
Q 039790 310 L--ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGE-ITELSMC 385 (1395)
Q Consensus 310 ~--~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~-V~slafs 385 (1395)
+ ..|...+.+++|+|++..+++++.++.+.+|+..... .+..+ .+|.+. +.+++|+
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--------------------VVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------------------EEEEEECSSCSSSCCEEEEC
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--------------------eeeeeccCCCCCcceEEEEc
Confidence 5 6788899999999999988888888888888764321 13445 678776 8999999
Q ss_pred cCCCcEEEEE---eCCCcEEEEeCCCCce-eEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 386 QWLTTRLASA---SLDGTVKIWDDRKSTP-LAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 386 pdg~~~LaSg---s~Dg~IrIWDl~sg~~-l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+++ .+|++| +.|+.|++||++++.. +..+. .|.. .|.+++|+ |++.+|+++|+.|+.|++||+.++
T Consensus 230 ~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~l~~~g~~dg~i~i~d~~~~--- 300 (402)
T 2aq5_A 230 SEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS-GVLLPFFD----PDTNIVYLCGKGDSSIRYFEITSE--- 300 (402)
T ss_dssp STT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS-SCEEEEEE----TTTTEEEEEETTCSCEEEEEECSS---
T ss_pred CCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCC-ceeEEEEc----CCCCEEEEEEcCCCeEEEEEecCC---
Confidence 998 899999 7999999999998754 44443 4554 89999999 999999877878999999999887
Q ss_pred CCCCCccccc-EEEEEeccC--cccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 461 LLPSDIESWK-CTQTLELKS--SAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 461 ~~~~~~~~~~-~l~tl~~h~--~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+ ++..+..+. ..+ ..++|++++.++++ .++.+++|++..+
T Consensus 301 ---------~~~~~~l~~~~~~~~v---------~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 301 ---------APFLHYLSMFSSKESQ---------RGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp ---------TTCEEEEEEECCSSCC---------SEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ---------CcceEeecccccCCcc---------cceEEeccccccee--cceeEEEEEcCCC
Confidence 3 244444433 332 35999999999875 5679999999764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=269.94 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=219.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-E
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-Y 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~ 230 (1395)
+.+.+.+..|++++.|+.|++|++.... .......+.+|...|.+++|+++++ +
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------KNVDLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------TEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCC-------------------------ccccceeeeecCCceEEEEECCCCCcE
Confidence 4455566788888888888888833110 0012334457899999999999999 9
Q ss_pred EEEEEcCCeEEEEEC-CCCceEEecc--CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC---------CCCCCCCcc
Q 039790 231 ICYGLKLGNIRILNI-ITALRSLLRG--HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE---------GPDEEDKPQ 298 (1395)
Q Consensus 231 LasGs~DG~IrIWd~-~~~~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t---------g~~~~~~~~ 298 (1395)
|++|+.||.|++||+ .++....+.+ |...|.+++| ++ +.+|++|+.||.|++||+.+ ++....
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~-~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--- 146 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK-YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--- 146 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE-ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS---
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEe-CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE---
Confidence 999999999999999 9988889999 9999999999 67 99999999999999999987 442221
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-CCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-VGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
+ .+...+.+++|++++ +++++.++.+.+|+... .... .......|..
T Consensus 147 -----------~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------------------~~~~~~~~~~ 194 (342)
T 1yfq_A 147 -----------T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN------------------GTIEESGLKY 194 (342)
T ss_dssp -----------S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC------------------CEEEECSCSS
T ss_pred -----------E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc------------------ceeeecCCCC
Confidence 1 256778899999887 77777777888887654 2110 0334556889
Q ss_pred CeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCC------ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEE
Q 039790 378 EITELSMCQ-WLTTRLASASLDGTVKIWDDRKS------TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 378 ~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg------~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.|.+++|+| ++ .+|++|+.||.|+|||++.+ ..+..+.+|.. ..|++++|+ |++++|+++
T Consensus 195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~ 269 (342)
T 1yfq_A 195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS----PRHKFLYTA 269 (342)
T ss_dssp CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC----TTTCCEEEE
T ss_pred ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc----CCCCEEEEe
Confidence 999999999 88 89999999999999999887 88889988742 289999999 999999997
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCe-EEEEE
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNA-IYAIH 516 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~-I~iWd 516 (1395)
+ .||.|++||+.++ +++.++..| ...+.. ++ ++|.+|++++.||. .+.|.
T Consensus 270 ~-~dg~i~vwd~~~~------------~~~~~~~~~h~~~v~~---------~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 270 G-SDGIISCWNLQTR------------KKIKNFAKFNEDSVVK---------IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E-TTSCEEEEETTTT------------EEEEECCCCSSSEEEE---------EE--ECSSEEEEEEECTHHHHCSS
T ss_pred c-CCceEEEEcCccH------------hHhhhhhcccCCCceE---------ec--CCCCeEEEEecCCccccccc
Confidence 7 9999999999988 888888887 655432 44 99999999999998 55444
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=283.52 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=210.0
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.+ .+..|++++.||+|++|++... ..+. .......+ +|...|.+++|++++++
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~-----------------~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEI-----------------IVGE-----VYSSSLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHH-----------------HTTC-----CCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred EEECCCCCCEEEEecCCceEEEeECccc-----------------ccCc-----ccceeeec-cCCCCEEEEEEeCCCCE
Confidence 56666 7789999999999999994310 0000 01122333 48999999999999999
Q ss_pred EEEEEcCCeEEEEECC---CC-ceEEec----------c--CCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 231 ICYGLKLGNIRILNII---TA-LRSLLR----------G--HTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~---~~-~~~~l~----------~--H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
|++|+.||.|+|||+. .+ ....+. . +...+.++.|. ++++.+|++|+.||+|++||+++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 203 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-- 203 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--
Confidence 9999999999999995 33 222221 2 56677777742 5789999999999999999999877
Q ss_pred CCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 294 EDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+..+.. |...+++++|+|++..+++++.++.+.+|+... +. .+..
T Consensus 204 ------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~-------------------~~~~ 251 (437)
T 3gre_A 204 ------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NV-------------------LIRS 251 (437)
T ss_dssp ------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TE-------------------EEEE
T ss_pred ------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-cc-------------------EEEE
Confidence 3444444 678999999999998888888888888887643 11 1344
Q ss_pred Ec-ccCCCeEEEEEec----CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-------------------------C
Q 039790 372 VG-KHDGEITELSMCQ----WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-------------------------H 421 (1395)
Q Consensus 372 l~-~h~~~V~slafsp----dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-------------------------~ 421 (1395)
+. .|...|++++|+| ++ .+|++|+.||+|+|||+++++++..+.+|.. .
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred EecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 43 6788999997665 45 7999999999999999999999998886532 1
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc------------------
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL------------------ 483 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~------------------ 483 (1395)
.|++++|+ ++.+|++++ .|+.|++||+.++ +++..+.+|.....
T Consensus 331 ~v~~l~~~-----~~~~l~s~~-~d~~i~~wd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
T 3gre_A 331 ALSTISVS-----NDKILLTDE-ATSSIVMFSLNEL------------SSSKAVISPSRFSDVFIPTQVTANLTMLLRKM 392 (437)
T ss_dssp GGCCEEEE-----TTEEEEEEG-GGTEEEEEETTCG------------GGCEEEECC--CCCEEEEEEEETTEEEEEEEC
T ss_pred ceEEEEEC-----CceEEEecC-CCCeEEEEECCCc------------ccceEEecccccCceEEEEEeecceEEEEEec
Confidence 57788886 557888866 9999999999988 44444444210000
Q ss_pred -----------cccccccceEEEEeCC--CCEEEEEeCCCeEEEEE
Q 039790 484 -----------RLEDAFFNQVVALNRA--GLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 484 -----------~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~iWd 516 (1395)
..+.. .+..+.|.++ +.+|++|+.||.|+||+
T Consensus 393 ~~~~~~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C-------------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00111 1234677776 88999999999999994
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=276.05 Aligned_cols=292 Identities=19% Similarity=0.237 Sum_probs=218.1
Q ss_pred EEEEEecCCCEE-EEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC
Q 039790 220 LGRQIAVNRNYI-CYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 220 ~~va~Spdg~~L-asGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
..++++++...+ ++|+.||.|+|||+... ....+.+|.+.|++++| ++ ++.+|++|+.||+|+|||+.++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEE-CTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEe-CCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 356778776544 45788999999999663 35568899999999999 77 899999999999999999998752
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.... ...+..+..|...+.+++|+|++. .+++++.++.+.+|+... +. ....
T Consensus 117 ~~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~-------------------~~~~ 169 (402)
T 2aq5_A 117 VLPL-------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA-------------------AVLT 169 (402)
T ss_dssp SSCB-------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE-------------------EEEE
T ss_pred cccc-------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC-------------------ccEE
Confidence 2110 012345567889999999999985 555555566677776543 21 1455
Q ss_pred E--cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEe--cCC
Q 039790 372 V--GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGG--PLN 446 (1395)
Q Consensus 372 l--~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~G--s~D 446 (1395)
+ .+|.+.|++++|+|++ .+|++++.||.|++||+++++++..+ .+|.+..+.++.|+ |++.+|+++. +.|
T Consensus 170 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV----SEGKILTTGFSRMSE 244 (402)
T ss_dssp ECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC----STTEEEEEEECTTCC
T ss_pred EecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc----CCCcEEEEeccCCCC
Confidence 6 6899999999999998 89999999999999999999999999 78987459999999 9999888862 489
Q ss_pred CeEEEEECCCCCCCCCCCCcccccE-EEEEec-cCcccccccccccceEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKC-TQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLL-ANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~-l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~Dg~I~iWdl~~g~~~ 523 (1395)
+.|+|||++++ .. +..+.. +...+ ..++|+++|.+|+ +|+.|+.|++|++..+.
T Consensus 245 ~~i~iwd~~~~------------~~~~~~~~~~~~~~v---------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-- 301 (402)
T 2aq5_A 245 RQVALWDTKHL------------EEPLSLQELDTSSGV---------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-- 301 (402)
T ss_dssp EEEEEEETTBC------------SSCSEEEECCCCSSC---------EEEEEETTTTEEEEEETTCSCEEEEEECSST--
T ss_pred ceEEEEcCccc------------cCCceEEeccCCCce---------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCC--
Confidence 99999999886 22 222322 22222 3589999999886 55579999999998753
Q ss_pred CCcceeeeeeeeccccEEEEecCCC-CcCcCCCCeEEEEEcCCCcee
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTT-DASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~-d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
..+..+..+....++..+..... ..+.++++.+++|++.++.+.
T Consensus 302 --~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 302 --PFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCE 346 (402)
T ss_dssp --TCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEEE
T ss_pred --cceEeecccccCCcccceEEecccccceecceeEEEEEcCCCcEE
Confidence 23556666654444444444331 223567789999999988654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=278.77 Aligned_cols=296 Identities=12% Similarity=0.122 Sum_probs=214.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC------------CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP------------GLV 219 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~------------~~V 219 (1395)
+.+.+.+..|++++.||.|++|++... +... .....+...+..+.+|. +.|
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~--~~~~---------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQE--NKIQ---------------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC----------------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCC--CCCC---------------cccccceeEecccccccccccccccccccCce
Confidence 566777889999999999999994421 1000 00001223456777887 889
Q ss_pred EEEEEecCC--CEEEEEEcCCeEEEEECCCCce-----------------------------------------EEeccC
Q 039790 220 LGRQIAVNR--NYICYGLKLGNIRILNIITALR-----------------------------------------SLLRGH 256 (1395)
Q Consensus 220 ~~va~Spdg--~~LasGs~DG~IrIWd~~~~~~-----------------------------------------~~l~~H 256 (1395)
.+++|++++ .+|++|+.||.|+|||+.++.. ..+.+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 8999999999999999976422 224689
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE-------EecCCCCCccEEEEeCCC-Ce
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-------ILADGDSVHPRVCWHPHK-QE 328 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-------~~~~~~~~v~~v~~sp~~-~~ 328 (1395)
...|++++| ++++++|++| .||+|+|||+..+. ..+. .+..|...+.+++|+|++ ..
T Consensus 177 ~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 241 (447)
T 3dw8_B 177 TYHINSISI-NSDYETYLSA-DDLRINLWHLEITD-------------RSFNIVDIKPANMEELTEVITAAEFHPNSCNT 241 (447)
T ss_dssp SSCCCEEEE-CTTSSEEEEE-CSSEEEEEETTEEE-------------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTE
T ss_pred CcceEEEEE-cCCCCEEEEe-CCCeEEEEECCCCC-------------ceeeeeecccccccccCcceEEEEECCCCCcE
Confidence 999999999 8899999998 79999999998432 1222 244678889999999998 66
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC------------CeEEEEEecCCCcEEEEEe
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG------------EITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~------------~V~slafspdg~~~LaSgs 396 (1395)
+++++.++.+.+|+....... ......+.+|.. .|++++|+|+| .+|++++
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~ 304 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALC----------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRD 304 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSS----------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEE
T ss_pred EEEEeCCCeEEEEECcCCccc----------------cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEee
Confidence 666666777777776442210 011345555654 99999999998 8999999
Q ss_pred CCCcEEEEeCCC-CceeEEecCCCCCC---------------eeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 397 LDGTVKIWDDRK-STPLAVLRPYDGHP---------------VNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 397 ~Dg~IrIWDl~s-g~~l~tl~~h~~~~---------------V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
. |.|+|||++. ++++.++.+|.. . +..++|+ |++.+|++++ .||.|+|||+.++
T Consensus 305 ~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~~s----~~~~~l~s~s-~dg~v~iwd~~~~--- 374 (447)
T 3dw8_B 305 Y-LSVKVWDLNMENRPVETYQVHEY-LRSKLCSLYENDCIFDKFECCWN----GSDSVVMTGS-YNNFFRMFDRNTK--- 374 (447)
T ss_dssp S-SEEEEEETTCCSSCSCCEESCGG-GTTTHHHHHHTSGGGCCCCEEEC----TTSSEEEEEC-STTEEEEEETTTC---
T ss_pred C-CeEEEEeCCCCccccceeecccc-ccccccccccccccccceEEEEC----CCCCEEEEec-cCCEEEEEEcCCC---
Confidence 8 9999999997 899999998863 1 2349999 9999998866 9999999999987
Q ss_pred CCCCCcccccEEEEEeccCcccc------------------------cccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 461 LLPSDIESWKCTQTLELKSSAEL------------------------RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~------------------------~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+++ .+..+..... .....--...++|+|+|.+|++++.++ +++|.
T Consensus 375 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 375 ---------RDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp ---------CEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ---------cce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 333 2332221000 000011123699999999999998776 88887
Q ss_pred c
Q 039790 517 M 517 (1395)
Q Consensus 517 l 517 (1395)
-
T Consensus 444 ~ 444 (447)
T 3dw8_B 444 D 444 (447)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=266.77 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=204.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+.+.+..|++++.||.|++|++.... .....+..+.+|...|.+++|++ |++
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEEEEEcCCCCCC
Confidence 5566677888888888888888843110 01134567788999999999999 699
Q ss_pred EEEEEEcCCeEEEEECCCC----------ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 230 YICYGLKLGNIRILNIITA----------LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~----------~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+|++|+.||.|+|||+.++ ....+.+|.+.|.+++| +++ +.+|++|+.||.|++||+.++.....+.
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF-APAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE-cCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999875 26678899999999999 788 9999999999999999999887543321
Q ss_pred ccccceEEEEE-EecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 298 QILGKIVVAIQ-ILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 298 ~~~~~~i~~l~-~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
... .+..+. ....+...+.++.|+|+ +. +++++..+..++||....+.. ..+..+.
T Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 211 (351)
T 3f3f_A 152 LTS--EMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKL-----------------HVAAKLP 211 (351)
T ss_dssp EEE--EEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCE-----------------EEEEECC
T ss_pred ccc--cccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCce-----------------eeeeecC
Confidence 100 000000 11246677889999997 55 555555555556665443221 1145677
Q ss_pred ccCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------------------------------------
Q 039790 374 KHDGEITELSMCQWLT---TRLASASLDGTVKIWDDRKS----------------------------------------- 409 (1395)
Q Consensus 374 ~h~~~V~slafspdg~---~~LaSgs~Dg~IrIWDl~sg----------------------------------------- 409 (1395)
+|...|++++|+|+++ .+|++|+.||.|++||++.+
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 8999999999999973 69999999999999999875
Q ss_pred -----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 410 -----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 410 -----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
.++..+.+|.+ .|++++|+ |++++|++++ .||.|+|||+.++ ..++|+..+..|
T Consensus 292 ~~~~~~~~~~~~~h~~-~v~~~~~s----~~~~~l~s~~-~dg~v~iw~~~~~---------~~~~~~~~~~~~ 350 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNG-EVWSVSWN----LTGTILSSAG-DDGKVRLWKATYS---------NEFKCMSVITAQ 350 (351)
T ss_dssp CSEEEEEEEEECTTSS-CEEEEEEC----SSSCCEEEEE-TTSCEEEEEECTT---------SCEEEEEEEC--
T ss_pred ccccccEEEEEecccc-cEEEEEEc----CCCCEEEEec-CCCcEEEEecCcC---------cchhheeehccc
Confidence 67788899987 99999999 9999999977 9999999999987 556777766543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=280.02 Aligned_cols=270 Identities=18% Similarity=0.231 Sum_probs=210.0
Q ss_pred eeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCC-----------CceEEeccCCCCeEEEEEeeCCCC-EEEEE
Q 039790 210 TKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIIT-----------ALRSLLRGHTQRVTDMAFFAEDVH-LLASA 276 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~-----------~~~~~l~~H~~~V~slaf~s~dg~-~LaSg 276 (1395)
.....|.+.|++++|+++ +++|++|+.||.|+|||+.. .....+.+|...|++|+| ++++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE-CTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe-CCCCCCeEEEE
Confidence 445679999999999997 78999999999999999986 246788899999999999 77777 99999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.||+|++||+..+.. ....+.....+..|...+.+++|+|++..+|+++ .++.+.+|+......
T Consensus 201 ~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------- 266 (430)
T 2xyi_A 201 SDDHTICLWDINATPK-------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------- 266 (430)
T ss_dssp CTTSCEEEEETTSCCB-------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------
T ss_pred eCCCeEEEEeCCCCCC-------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------
Confidence 9999999999998541 1122233455667888999999999665555555 566666666543211
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
...+..+..|...|++++|+|++..+|++|+.||+|+|||+++ +.++..+.+|.+ .|++|+|+ |
T Consensus 267 ----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~s----p 331 (430)
T 2xyi_A 267 ----------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWS----P 331 (430)
T ss_dssp ----------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEEC----S
T ss_pred ----------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEEC----C
Confidence 0114556689999999999999866899999999999999998 578999999987 99999999 8
Q ss_pred CCcE-EEEEecCCCeEEEEECCCCCCCCCCC--CcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCC
Q 039790 435 QHIV-LITGGPLNRELKIWASAEEEGWLLPS--DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKN 510 (1395)
Q Consensus 435 dg~~-L~s~Gs~Dg~I~IWDl~tg~~~~~~~--~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg 510 (1395)
+++. |++++ .|+.|+|||+.......... ......++..+.+|...+. .+.|++++. +|++++.||
T Consensus 332 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 332 HNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS---------DFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCTTEEEEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE---------EEEECSSSTTEEEEEETTS
T ss_pred CCCCEEEEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce---------EEEECCCCCCEEEEEECCC
Confidence 8865 55655 99999999998731100000 0011256677777766553 489999999 999999999
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.|+||++..
T Consensus 402 ~i~iw~~~~ 410 (430)
T 2xyi_A 402 IMQVWQMAE 410 (430)
T ss_dssp EEEEEEECH
T ss_pred CEEEeEccc
Confidence 999999875
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=273.42 Aligned_cols=256 Identities=18% Similarity=0.205 Sum_probs=197.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+.+++..|++++.|++|++||+.. + ....+..+.+|.+.|++++|++ +++
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~--------------------~------~~~~~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRN--------------------G------GQILIADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEET--------------------T------EEEEEEEEECCSSCEEEEEECCGGGSS
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecC--------------------C------CcEEEEEEcCCCccEEEEEeCCCCCCC
Confidence 56677788999999999999999431 0 0123567889999999999986 489
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||+|+|||+.++ ....+.+|...|.+++| +++ +.+|++|+.||+|++||+..+.. .
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~~~~-----------~ 140 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW-APHDYGLILACGSSDGAISLLTYTGEGQ-----------W 140 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEE-CCTTTCSCEEEECSSSCEEEEEECSSSC-----------E
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEE-CCCCCCcEEEEEcCCCCEEEEecCCCCC-----------c
Confidence 9999999999999999986 35678899999999999 666 78999999999999999987531 1
Q ss_pred EEEEEecCCCCCccEEEEeCCC-----------------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 305 VAIQILADGDSVHPRVCWHPHK-----------------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~-----------------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
........|...+.+++|+|+. ..+++++.++.+.+|+....... .
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~ 203 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------K 203 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------E
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------c
Confidence 1123345677788899999873 45555555666777765322110 1
Q ss_pred ceEEEcccCCCeEEEEEecCC---CcEEEEEeCCCcEEEEeCCCC---c-eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 368 GVQLVGKHDGEITELSMCQWL---TTRLASASLDGTVKIWDDRKS---T-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg---~~~LaSgs~Dg~IrIWDl~sg---~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+.+|.+.|++++|+|++ ..+|++|+.||+|+|||+.+. . ....+..|.+ .|++++|+ |+|.+|+
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~s----p~g~~la 278 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWS----ITANILA 278 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEEC----TTTCCEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEc----CCCCEEE
Confidence 145567899999999999985 368999999999999998763 1 2344567776 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
+++ .|++|+||+.... ..|.|+..+..
T Consensus 279 s~~-~D~~v~lw~~~~~---------g~~~~~~~~~~ 305 (316)
T 3bg1_A 279 VSG-GDNKVTLWKESVD---------GQWVCISDVNK 305 (316)
T ss_dssp EEE-SSSCEEEEEECTT---------SCEEEEEECC-
T ss_pred EEc-CCCeEEEEEECCC---------CcEEEeeeccC
Confidence 977 9999999998654 44667766653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=267.94 Aligned_cols=281 Identities=13% Similarity=0.082 Sum_probs=214.7
Q ss_pred ccCCCC---CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 152 PTLPPP---SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 152 ~s~p~p---~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
+.+.+. +..|++++.||.|++|++.. . + ......+.+|.+.|.+++|++++
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~-~------------------~-------~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQD-S------------------G-------QTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECT-T------------------S-------CEEEEEEEECSSCEEEEEECTTS
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCC-C------------------C-------ceeEEEeccccCCEEEEEECcCC
Confidence 444555 46788888888888888331 0 0 02225677899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.||.|+|||+.++....+.+|...|++++|+ ++++.+|++|+.||.|++||+.+++..
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------- 164 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM-------------- 164 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS--------------
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE--------------
Confidence 99999999999999999999877788999999999995 578889999999999999999987622
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
..+..+ ..+.++.+ ....+++++.++.+.+|+........ ......+...+.++++.++
T Consensus 165 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 165 MVLQLP-ERCYCADV--IYPMAVVATAERGLIVYQLENQPSEF------------------RRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEEECS-SCEEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEE------------------EECCCSCSSCEEEEEEEEC
T ss_pred EEEecC-CCceEEEe--cCCeeEEEeCCCcEEEEEeccccchh------------------hhccccccCCCceEEEccc
Confidence 122222 23333444 45578888888888888875432210 1111234456677777665
Q ss_pred CC---cEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCC-----------CeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 388 LT---TRLASASLDGTVKIWDDRKS---TPLAVLRPYDGH-----------PVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 388 g~---~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~-----------~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.. ..+++|+.||.|++||++.. ..+..+.+|... .|++++|+ |++++|++++ .||.|+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~s~~-~dg~i~ 298 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH----PVHGTLATVG-SDGRFS 298 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC----TTTCCEEEEE-TTSCEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe----cCCCEEEEEc-cCCeEE
Confidence 41 23999999999999999987 678888888642 59999999 9999999977 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|||+.++ +++..+..|...+. .++|+++|.+|++++.|+..+.|++-.
T Consensus 299 iwd~~~~------------~~~~~~~~~~~~v~---------~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 299 FWDKDAR------------TKLKTSEQLDQPIS---------ACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEETTTT------------EEEEECCCCSSCEE---------EEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEECCCC------------cEEEEecCCCCCce---------EEEECCCCCeEEEEecccccccccccC
Confidence 9999988 89999988876654 499999999999999988666665543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=300.22 Aligned_cols=257 Identities=19% Similarity=0.219 Sum_probs=206.0
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFI 284 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~I 284 (1395)
..+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| +++ +++|++|+.||+|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~-s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW-AHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEe-cCCCCCCEEEEEeCCCeEEE
Confidence 467899999999999999999999999999999999854 46688999999999999 666 899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
||+.++. ...+.....|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 82 wd~~~~~------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------- 136 (753)
T 3jro_A 82 WKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------- 136 (753)
T ss_dssp EEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------
T ss_pred EECCCCc------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------
Confidence 9998764 2245566778899999999999 777777777788888876543211
Q ss_pred cccccceEEEcccCCCeEEEEEecC-------------CCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQW-------------LTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspd-------------g~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~s 425 (1395)
....+.+|...|++++|+|. + .+|++|+.||+|++||++++ .++..+.+|.+ .|++
T Consensus 137 -----~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~ 209 (753)
T 3jro_A 137 -----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRD 209 (753)
T ss_dssp -----CCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEE
T ss_pred -----ceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEE
Confidence 13456789999999999994 5 89999999999999999887 56778899997 9999
Q ss_pred EEEeecCCCC---CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 426 VTFLIGPHPQ---HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 426 V~fs~~~~pd---g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
++|+ |+ +.+|++++ .||.|+|||+.+++... ...+.....|...+ ..++|+++|.+
T Consensus 210 l~~s----p~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v---------~~l~~spdg~~ 268 (753)
T 3jro_A 210 VAWS----PTVLLRSYLASVS-QDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVL---------WRASWSLSGNV 268 (753)
T ss_dssp EEEC----CCCSSSEEEEEEE-SSSCEEEEEESSSSSCC-------BCCBSSSSCCSSCC---------CCEEECTTTCC
T ss_pred EEec----cCCCCCCEEEEEe-cCCEEEEecCCCCCCcc-------eeEEeccCCCCCce---------EEEEEcCCCCE
Confidence 9999 88 88999877 99999999998862100 00111112233332 34899999999
Q ss_pred EEEEeCCCeEEEEEcCCC
Q 039790 503 LLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~~g 520 (1395)
|++++.||.|++|++..+
T Consensus 269 l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 269 LALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEECSSSCEECCBCCSS
T ss_pred EEEEcCCCEEEEEecCCC
Confidence 999999999999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=251.49 Aligned_cols=273 Identities=14% Similarity=0.214 Sum_probs=195.0
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
++.+++||+++ +||+|. |++|+|||+.++. +. .+.+|...|++|+| ++++++|++|+.||+|+|||+.+++
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~-~~~~~~l~sgs~Dg~v~iw~~~~~~--- 100 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQK--- 100 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTE---
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEE-CCCCCEEEEEECCCcEEEeecCCce---
Confidence 45778999886 788765 8999999999984 33 34578889999999 9999999999999999999999887
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+..|...+.++. .++..+++++.++.+..|+...... .+..+.+
T Consensus 101 -----------~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 148 (318)
T 4ggc_A 101 -----------RLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEH-------------------HVATLSG 148 (318)
T ss_dssp -----------EEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSC-------------------EEEEEEC
T ss_pred -----------eEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCce-------------------eEEEEcC
Confidence 4555566666655444 4454444444455555554432211 1566788
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCCcEEE--EEecCCCe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI--TGGPLNRE 448 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~--s~Gs~Dg~ 448 (1395)
|...+.++.|++++ .+|++++.||+|++||+++++ .+.....|.+ .|.++.|+ +++..++ .+|+.+++
T Consensus 149 ~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 149 HSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWC----PWQSNVLATGGGTSDRH 222 (318)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS-CEEEEEEC----TTSTTEEEEEECTTTCE
T ss_pred ccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCC-ceEEEEec----CCCCcEEEEEecCCCCE
Confidence 99999999999998 899999999999999999875 3456667776 89999998 6665433 34668999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCCCCCCCCc
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~g~~~~~~ 526 (1395)
|+|||.... ........+.. + ..+.|++++..+++++ .|+.|++||+.+++
T Consensus 223 i~lwd~~~~------------~~~~~~~~~~~-v---------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----- 275 (318)
T 4ggc_A 223 IRIWNVCSG------------ACLSAVDAHSQ-V---------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA----- 275 (318)
T ss_dssp EEEEETTTC------------CEEEEEECSSC-E---------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----
T ss_pred EEEEecccc------------cccccccceee-e---------eeeeecccccceEEEEEcCCCEEEEEECCCCc-----
Confidence 999999887 55555443332 2 2478888888877654 79999999998754
Q ss_pred ceeeeeeeecc-ccEEEEecCCCCc--C--cCCCCeEEEEEcCC
Q 039790 527 RMDYIAEFTVT-MPILSLTGTTTDA--S--PDGEHIVQIYCVQT 565 (1395)
Q Consensus 527 ~~~~i~~f~~~-~~ils~~~~~~d~--~--~s~dg~V~lWdv~t 565 (1395)
.+..+.+| ..+.++.... +. + ++.|++|+||++..
T Consensus 276 ---~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 276 ---KVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ---EEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSC
T ss_pred ---EEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Confidence 23334333 2344433332 21 1 24566666666643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=269.11 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=165.5
Q ss_pred eCCCCCEEEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..+...+.+++|||||++|++|+ .|++|+|||+.++.......|.+.|++|+| +++|.+|++++.| .+++|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~f-spdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHF-STDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEE-CTTSSEEEEECSS-CEEEEETTTC
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEE-ccCCceEEeccce-eEEEEEeccC
Confidence 34567899999999999987654 789999999999864444458889999999 9999999999855 5777777766
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
.. ........+...+.+++|+|++..+++++.++ .+..|+...... ..
T Consensus 208 ~~------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------~~ 259 (365)
T 4h5i_A 208 SC------------IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------SV 259 (365)
T ss_dssp CE------------EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------EE
T ss_pred cc------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------cc
Confidence 51 11233445677889999999999888887765 344444322110 01
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.....+.+|...|++++|+|+| ++||+|+.|++|+|||+++++++.++ .+|.+ .|++|+|+ |||++|++++ .
T Consensus 260 ~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fS----pdg~~laS~S-~ 332 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTIS----PDSTYVASVS-A 332 (365)
T ss_dssp EEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEEC----TTSCEEEEEE-T
T ss_pred eeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEEC----CCCCEEEEEe-C
Confidence 1135667899999999999999 89999999999999999999999985 78998 99999999 9999999966 9
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
|++|||||+...
T Consensus 333 D~tvrvw~ip~~ 344 (365)
T 4h5i_A 333 ANTIHIIKLPLN 344 (365)
T ss_dssp TSEEEEEECCTT
T ss_pred CCeEEEEEcCCC
Confidence 999999999654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=276.02 Aligned_cols=319 Identities=10% Similarity=0.043 Sum_probs=187.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCee-ee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHL-IG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L-~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs 235 (1395)
..|+..+.|+.|++|+.. +++... .+ ...++.+........+ ............|...+....+++++.+|++|+
T Consensus 31 ~~l~a~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~ 108 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCAS-EEQTPGSTGLTLQELFTIQTGLPTLHL-SFSSSCSYSENLHDGDGNVNSSPVYSLFLACVC 108 (393)
T ss_dssp TTEEEEEESSEEEEEEEE-ECCSSSCCSEEEEEEEEEECSSCEEEE-EECTTCEEECC----------CCEEEEEEEEEE
T ss_pred CCEEEEECCCCEEEEECC-CCCcccccccceeeeEEEecCCCeeeE-eecCCccccccccCCCcceeecCCCCCEEEEEe
Confidence 456666678899999843 222222 11 1223333221110000 001112223334555666667788899999999
Q ss_pred cCCeEEEEECCCCc------eEEeccCCCCeEEEEEeeC--------CCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 236 KLGNIRILNIITAL------RSLLRGHTQRVTDMAFFAE--------DVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~------~~~l~~H~~~V~slaf~s~--------dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|++|+|||..++. +..+.+|.+.|++|+| ++ ++++|+||+.|++|+|||+.++.
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~-~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---------- 177 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDI-ADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---------- 177 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEE-EEEECTTCSEEEEEEEEEETTSEEEEEEEETTE----------
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEE-ccccccccCCCCCEEEEEECCCeEEEEECCCCc----------
Confidence 99999999999873 2347899999999999 54 78999999999999999998765
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC----ccC--ccccccceEEEccc
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL----KCP--VDELINGVQLVGKH 375 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~----~~~--~~~~~~~~~~l~~h 375 (1395)
.+.....+...+.+++|+|++..+++++..++.+++|+...+........... .+. ............+|
T Consensus 178 ----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 178 ----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred ----eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 33344456678889999999876666666555444444333321100000000 000 00011112334579
Q ss_pred CCCeEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC---------------CCCCcEE
Q 039790 376 DGEITELSMC-QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP---------------HPQHIVL 439 (1395)
Q Consensus 376 ~~~V~slafs-pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~---------------~pdg~~L 439 (1395)
...|.++.|+ +++ .+|++++.|++|++||+..+.....+..|.. .+..+.|.+.. .+.+..+
T Consensus 254 ~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 254 ASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp SSSCSEEEEETTTT-CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 9999999998 666 8999999999999999998877777766654 44443333100 0234455
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++|+.||+|+|||+.++ .++..+..|...+. .++|+|||++|++++.+| +.+|++.
T Consensus 332 ~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~---------svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIV---------DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEETTTTEEEEEETTCT------------TCCEEEEECSSCEE---------EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEECCCCEEEEEECCCC------------cEEEEecCCCCcEE---------EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 566779999999999988 77777777776554 499999999999998766 6666653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=257.99 Aligned_cols=266 Identities=9% Similarity=0.031 Sum_probs=203.8
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IW 285 (1395)
...+|.+.|++++|++++++|++|+.||.|+|||+.++. ...+.+|...|.+++| ++++. +|++|+.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF-IDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE-EESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEE-CCCCCcEEEEEcCCCeEEEE
Confidence 345799999999999999999999999999999999876 6777799999999999 88899 99999999999999
Q ss_pred EC-CCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NI-TEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl-~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|+ .++. ...+.. |...+.+++|++ +..+++++.++.+.+|+..........
T Consensus 85 d~~~~~~---------------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~---------- 138 (342)
T 1yfq_A 85 DLIGSPS---------------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA---------- 138 (342)
T ss_dssp CSSSSSS---------------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE----------
T ss_pred EeccCCc---------------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc----------
Confidence 99 8765 244556 888999999999 777777777777777765431100000
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc--eeEEecCCCCCCeeEEEEeecCCC-CCcE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-ST--PLAVLRPYDGHPVNCVTFLIGPHP-QHIV 438 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~--~l~tl~~h~~~~V~sV~fs~~~~p-dg~~ 438 (1395)
.....+..+. |...|++++|++++ |++++.||.|++||+++ +. .......|.. .|.+++|+ | ++.+
T Consensus 139 -~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~----~~~~~~ 208 (342)
T 1yfq_A 139 -VKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALL----PKEQEG 208 (342)
T ss_dssp -EEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEEC----SGGGCE
T ss_pred -ccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCC-ceeEEEEC----CCCCCE
Confidence 0000012233 88899999999864 99999999999999998 54 3334556766 89999999 9 9999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .||.|+|||+.... +....+++..+..|...............++|+++|.+|++++.||.|++||+.
T Consensus 209 l~~~~-~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 209 YACSS-IDGRVAVEFFDDQG------DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEE-TTSEEEEEECCTTC------CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEEe-cCCcEEEEEEcCCC------cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99977 89999999997640 001125566777775421111111233468999999999999999999999998
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
.+
T Consensus 282 ~~ 283 (342)
T 1yfq_A 282 TR 283 (342)
T ss_dssp TT
T ss_pred cH
Confidence 75
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=257.09 Aligned_cols=245 Identities=16% Similarity=0.147 Sum_probs=196.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--RN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g~ 229 (1395)
+.+.+.+..|++++.||.|++|++.. .....+..+.+|.+.|++++|+++ ++
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~--------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEG--------------------------ETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEET--------------------------TEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCC--------------------------CcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 55666778888888888898888321 012445677889999999999987 99
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||.|+|||+.++ ....+.+|...|.+++| +++ +.+|++++.||.|++||+..+...
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------- 138 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPLLLVASSDGKVSVVEFKENGTT----------- 138 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEECCTTSCC-----------
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEe-CCCCCCCEEEEecCCCcEEEEecCCCCce-----------
Confidence 9999999999999999988 56778889999999999 777 899999999999999999987421
Q ss_pred EEEEEecCCCCCccEEEEeC-------------CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHP-------------HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp-------------~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.......+...+.+++|+| ++..+++++.++.+.+|+....... ......
T Consensus 139 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~ 201 (379)
T 3jrp_A 139 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 201 (379)
T ss_dssp -CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc----------------eeeEEE
Confidence 1223456788899999999 5777777777888888876432211 111456
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc---eeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST---PLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|...|++++|+|++ +.+|++++.||.|+|||++++. ....+. .|.. .|++++|+ |+|.+|++++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~g~~l~~~~- 275 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 275 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEEC----SSSCCEEEEE-
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEc----CCCCEEEEec-
Confidence 77899999999999993 3899999999999999999874 222232 3666 89999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.||.|+|||+..+
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 8999999999866
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=262.92 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=205.1
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEec--------------------------------------
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLR-------------------------------------- 254 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~-------------------------------------- 254 (1395)
..+.+++|+++|++|+++ .++.|++||+.+|. +..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 467889999999977766 57899999998875 23333
Q ss_pred ----------------cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECC--CCCCCCCCcccccceEEEEEEecCCCC
Q 039790 255 ----------------GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 255 ----------------~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~--tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
+|.+.|++++| ++++.+| ++|+.||+|+|||+. ++.+ +..+.. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------~~~~~~-~~~~~ 150 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-TSDESRLIACADSDKSLLVFDVDKTSKNV-----------LKLRKR-FCFSK 150 (450)
T ss_dssp ----------------CCCCCEEEEEE-CTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------EEEEEE-EECSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEE-cCCCCEEEEEECCCCeEEEEECcCCCCce-----------eeeeec-ccCCC
Confidence 34447999999 8999996 899999999999998 6651 112211 24567
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC---CCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW---LTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd---g~~~L 392 (1395)
.+.+++|+|++..+++++.++.+..|+........ .....+.+|...|++++|+|+ + .+|
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~~~~-~~l 213 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK----------------FTQEPILGHVSMLTDVHLIKDSDGH-QFI 213 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS----------------CCCCCSEECSSCEEEEEEEECTTSC-EEE
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc----------------ccceeeecccCceEEEEEcCCCCCC-cEE
Confidence 78999999999988888888888888764422110 012245579999999999999 7 899
Q ss_pred EEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
++|+.|++|+|||++++.++.. +.+|.+ .|++++|+ ++.+|++++ .|++|+|||+.++ ++
T Consensus 214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-----d~~~l~s~~-~d~~v~vwd~~~~------------~~ 274 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-----KDYLLLSAG-GDDKIFAWDWKTG------------KN 274 (450)
T ss_dssp EEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-----STTEEEEEE-SSSEEEEEETTTC------------CE
T ss_pred EEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-----CCCEEEEEe-CCCeEEEEECCCC------------cE
Confidence 9999999999999999998888 558987 99999994 788999977 9999999999988 88
Q ss_pred EEEEeccCcccc----------------cccccccceEEEEeCCCCEEEEEe-CCCeEEEEEc--CCCCCCCCcceeeee
Q 039790 472 TQTLELKSSAEL----------------RLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHM--DYGPNPASTRMDYIA 532 (1395)
Q Consensus 472 l~tl~~h~~~i~----------------~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl--~~g~~~~~~~~~~i~ 532 (1395)
+..+..+..... ..........++|++++.+|++++ .|+.|++|++ ..+ ..+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~-----~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK-----GDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST-----TCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC-----Cceeecc
Confidence 888875431000 001123345789999999999998 8999999999 332 1233444
Q ss_pred eeeccccEEEEecC
Q 039790 533 EFTVTMPILSLTGT 546 (1395)
Q Consensus 533 ~f~~~~~ils~~~~ 546 (1395)
.+..+..+..+...
T Consensus 350 ~~~~~~~v~~~~~~ 363 (450)
T 2vdu_B 350 IITFPYNVISLSAH 363 (450)
T ss_dssp EEECSSCEEEEEEE
T ss_pred EeccCCceEEEEec
Confidence 44444445444443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=270.03 Aligned_cols=311 Identities=8% Similarity=0.039 Sum_probs=219.0
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCee-eeCceEEEEEeccCCCccC-ccc-ccceeeee-CCCCCEEEEEEe
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL-IGNHSVYDIDVRLDGEVQP-QLE-VTPITKYI-SDPGLVLGRQIA 225 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L-~G~~~v~~v~~~~~G~~~~-~~~-~~~i~~l~-~h~~~V~~va~S 225 (1395)
..+++++++..+|+++.|++|+ +.. .++.+ .+...||.+.+.++|.... .+. ......+. .|...|.+++||
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~--~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS 94 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPK--YAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS 94 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EEC--CCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCceee--ccc--ccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence 3488899999999999999999 522 33444 4567899999999884321 111 22222222 568899999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEeccCCC-----CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRSLLRGHTQ-----RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~-----~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
|||++||+++.||.|+|||..+ ++..+. |.. .|.+++| ++||++|++|+.||+|+|||+.++....
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svaf-SPDG~~LAsgs~DGtVkIWd~~~~~l~~------ 165 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEW-NPIESSIVVGNEDGELQFFSIRKNSENT------ 165 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEE-CSSSSCEEEEETTSEEEEEECCCCTTTC------
T ss_pred CCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEE-cCCCCEEEEEcCCCEEEEEECCCCcccc------
Confidence 9999999999999999999654 666667 765 5999999 9999999999999999999999875110
Q ss_pred cceEEEEEEe----cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-ccc
Q 039790 301 GKIVVAIQIL----ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKH 375 (1395)
Q Consensus 301 ~~~i~~l~~~----~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h 375 (1395)
.....+..+ .+|...|.+++|+|++ +++++.++.+.+|+...... ....+.+ .+|
T Consensus 166 -~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----------------~~~~~tL~~~h 225 (588)
T 2j04_A 166 -PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----------------QPVSRMIQNAS 225 (588)
T ss_dssp -CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----------------CCCEEEEECCC
T ss_pred -ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----------------ccceeeecccc
Confidence 000123333 5577899999999998 77777788888887633210 0012345 478
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEE--eecCCCCCcEEEEEecCCCeEEEEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTF--LIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~f--s~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
...|.+++|+ | .+||+++ |++|++||+.+++......+|.+ .|+.+.| + ||+..|++++ .||+ ++|.
T Consensus 226 ~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s----~d~~~La~a~-edG~-klw~ 294 (588)
T 2j04_A 226 RRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHE----KESTILLMSN-KTSY-KVLL 294 (588)
T ss_dssp SSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTC----SSCEEEEECS-SCEE-EEEE
T ss_pred cCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeC----CCCCEEEEEc-CCCC-EEEe
Confidence 8999999999 5 7999987 69999999998877444448987 9999999 8 9998888865 8999 9999
Q ss_pred CCCCCCCCCCCCcc----cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 454 SAEEEGWLLPSDIE----SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 454 l~tg~~~~~~~~~~----~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
...- ....+.. ..+.+..+..........+..+.+..++|+|||.++|+++
T Consensus 295 ~d~~---~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 295 EDEL---HVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSSE---EEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred eccE---EECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 7521 0000000 0000000111111111112244556789999999988875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=255.13 Aligned_cols=242 Identities=9% Similarity=0.081 Sum_probs=178.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IW 285 (1395)
.++..+..|...|++++|++||++|++|+.+| ++|||..++.......+ ..+..++| ..+++++ ++|+.|++|+||
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRM-LHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEE-CTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEE-cCCCCEEEEEECCccEEEEE
Confidence 45556788999999999999999999998775 78999987653332222 35788888 6667766 678888999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+. +...+.+++|+++ .++++.++.+.+|+.....+.
T Consensus 87 d~~~~~--------------~~~~~~-~~~~v~~v~~~~~---~~~~~~~~~i~i~d~~~~~~~---------------- 132 (355)
T 3vu4_A 87 DDVKKQ--------------DVSRIK-VDAPVKDLFLSRE---FIVVSYGDVISVFKFGNPWKR---------------- 132 (355)
T ss_dssp ETTTTE--------------EEEEEE-CSSCEEEEEECSS---EEEEEETTEEEEEESSTTCCB----------------
T ss_pred ECCCCc--------------EEEEEE-CCCceEEEEEcCC---EEEEEEcCEEEEEECCCCcee----------------
Confidence 999876 222222 4457888999875 345566888888877543111
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCc----------------eeEEecCCCCCCeeEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKST----------------PLAVLRPYDGHPVNCVT 427 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~----------------~l~tl~~h~~~~V~sV~ 427 (1395)
+..+.. ....+++++ .+++. |+.||.|++||++++. ++..+.+|.+ .|++|+
T Consensus 133 ---~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~ 202 (355)
T 3vu4_A 133 ---ITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVR 202 (355)
T ss_dssp ---SSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS-CEEEEE
T ss_pred ---eEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEE
Confidence 111111 334556666 34554 6899999999999876 3789999998 999999
Q ss_pred EeecCCCCCcEEEEEecCCCe-EEEEECCCCCCCCCCCCcccccEEEEEe-c-cCcccccccccccceEEEEeCCCCEEE
Q 039790 428 FLIGPHPQHIVLITGGPLNRE-LKIWASAEEEGWLLPSDIESWKCTQTLE-L-KSSAELRLEDAFFNQVVALNRAGLFLL 504 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~-I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~-h~~~i~~~~~~~~~~~l~~S~dg~~La 504 (1395)
|+ |+|.+|++++ .|++ |+|||++++ +++.++. + |...+. .++|+++|.+|+
T Consensus 203 ~s----~~g~~l~s~s-~d~~~v~iwd~~~~------------~~~~~~~~g~h~~~v~---------~~~~s~~~~~l~ 256 (355)
T 3vu4_A 203 LN----RKSDMVATCS-QDGTIIRVFKTEDG------------VLVREFRRGLDRADVV---------DMKWSTDGSKLA 256 (355)
T ss_dssp EC----TTSSEEEEEE-TTCSEEEEEETTTC------------CEEEEEECTTCCSCEE---------EEEECTTSCEEE
T ss_pred EC----CCCCEEEEEe-CCCCEEEEEECCCC------------cEEEEEEcCCCCCcEE---------EEEECCCCCEEE
Confidence 99 9999999977 9998 999999988 9999998 4 665543 599999999999
Q ss_pred EEeCCCeEEEEEcCCCC
Q 039790 505 ANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 505 Sgs~Dg~I~iWdl~~g~ 521 (1395)
+++.|++|++||+..+.
T Consensus 257 s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 257 VVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEETTCEEEEEESSCCS
T ss_pred EEECCCEEEEEEccCCC
Confidence 99999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-23 Score=246.17 Aligned_cols=267 Identities=7% Similarity=0.060 Sum_probs=203.8
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE-EEEEcCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI-CYGLKLG 238 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L-asGs~DG 238 (1395)
.+++++.|+.|++|+... | +.+..+..| ..+.+++|+++|++| ++++.|+
T Consensus 4 l~vs~~~d~~v~v~d~~~--~--------------------------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~ 54 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTS--N--------------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSN 54 (391)
T ss_dssp EEEEETTTTEEEEEETTT--T--------------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGT
T ss_pred EEEEcCCCCEEEEEECCC--C--------------------------eEEEEeecC-CCcceEEECCCCCEEEEECCCCC
Confidence 578899999999999431 1 233344445 458999999999987 5667899
Q ss_pred eEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 239 NIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 239 ~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
.|++||+.++.. ..+..| ..|.+++| ++++++|+ +++.|+.|++||+.+++ .+..+.. ...
T Consensus 55 ~i~v~d~~~~~~~~~~~~~-~~v~~~~~-spdg~~l~~~~~~~~~v~v~d~~~~~--------------~~~~~~~-~~~ 117 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPAG-SSPQGVAV-SPDGKQVYVTNMASSTLSVIDTTSNT--------------VAGTVKT-GKS 117 (391)
T ss_dssp EEEEEETTTTEEEEEEECS-SSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTE--------------EEEEEEC-SSS
T ss_pred eEEEEECCCCeEEEEEECC-CCccceEE-CCCCCEEEEEECCCCEEEEEECCCCe--------------EEEEEeC-CCC
Confidence 999999998864 444444 49999999 88998775 45567999999999876 2233333 345
Q ss_pred ccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 317 HPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
+..++|++++..+++++. ++.+.+|+... ++. ...+.. ...+.+++|+|++..+++++
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~-------------------~~~~~~-~~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAV-------------------INTVSV-GRSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE-------------------EEEEEC-CSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCC-CcE-------------------EEEEec-CCCcceEEECCCCCEEEEEe
Confidence 789999999998876666 45566655432 211 333443 35679999999994444788
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
+.|+.|++||+++++++..+..+ . .+.+++|+ |+|++|++++. .|+.|++||+.++ +++.
T Consensus 177 ~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~----~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~ 238 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVIDTVKVE-A-APSGIAVN----PEGTKAYVTNVDKYFNTVSMIDTGTN------------KITA 238 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS-S-EEEEEEEC----TTSSEEEEEEECSSCCEEEEEETTTT------------EEEE
T ss_pred CCCCEEEEEECCCCeEEEEEecC-C-CccceEEC----CCCCEEEEEecCcCCCcEEEEECCCC------------eEEE
Confidence 89999999999999988888755 3 79999999 99999998764 6899999999888 8888
Q ss_pred EEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCC
Q 039790 474 TLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 474 tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~ 521 (1395)
.+..+... ..+.|+++|.+| ++++.|+.|++||+.+++
T Consensus 239 ~~~~~~~~----------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 239 RIPVGPDP----------AGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEECCSSE----------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecCCCc----------cEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 88765532 258999999877 677899999999998754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-24 Score=259.40 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=195.0
Q ss_pred eeCCCCCEEEEEEecCCCEE-EEEEcCCeEEEEECC--CC-ceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 212 YISDPGLVLGRQIAVNRNYI-CYGLKLGNIRILNII--TA-LRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~L-asGs~DG~IrIWd~~--~~-~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+|.+.|++++|+++|++| ++|+.||.|+|||+. ++ .+..+. .|...|++++| ++++.+|++|+.||.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI-AEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE-cCCCCEEEEEeCCCcEEEE
Confidence 34677899999999999996 899999999999998 65 455554 67789999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
++.++..... .+..+..|...+.+++|+|+ +..+++++.++.|.+|+......
T Consensus 177 ~~~~~~~~~~----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-------------- 232 (450)
T 2vdu_B 177 DINSIPEEKF----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-------------- 232 (450)
T ss_dssp ETTSCCCSSC----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--------------
T ss_pred ecCCcccccc----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--------------
Confidence 9988763210 01123456788999999999 77777777777787777643211
Q ss_pred cccccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC----------------------
Q 039790 363 DELINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD---------------------- 419 (1395)
Q Consensus 363 ~~~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---------------------- 419 (1395)
+.. +.+|...|++++|+ ++ .+|++|+.|++|+|||+++++++..+..+.
T Consensus 233 ------~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 233 ------VDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp ------EEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ------eeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 333 55899999999999 87 899999999999999999999998886321
Q ss_pred --CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC--CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 420 --GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS--AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 420 --~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl--~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
...|.+++|+ |++++|++++..|+.|+|||+ ..+ ....++..+..+ ..+ ..++
T Consensus 305 ~~~~~v~~i~~~----~~~~~l~~~~~~d~~i~iw~~~~~~~---------~~l~~~~~~~~~-~~v---------~~~~ 361 (450)
T 2vdu_B 305 IIEFAVSKIIKS----KNLPFVAFFVEATKCIIILEMSEKQK---------GDLALKQIITFP-YNV---------ISLS 361 (450)
T ss_dssp CBCCCEEEEEEC----SSSSEEEEEETTCSEEEEEEECSSST---------TCEEEEEEEECS-SCE---------EEEE
T ss_pred cceEEEEEEEEe----CCCCEEEEEECCCCeEEEEEeccCCC---------CceeeccEeccC-Cce---------EEEE
Confidence 1279999999 999999997768999999999 433 334677778776 333 2588
Q ss_pred EeCCCCEEEEEeC------CCeEEEEEcCC
Q 039790 496 LNRAGLFLLANAK------KNAIYAIHMDY 519 (1395)
Q Consensus 496 ~S~dg~~LaSgs~------Dg~I~iWdl~~ 519 (1395)
|++++.+++.++. ++.|.+|.+..
T Consensus 362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9996555444443 55688888765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=248.44 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=195.5
Q ss_pred cccceeeeeCCCCCEEEEEEecC---CCEEEEEEcCCeEEEEECCC-Cc--eEEeccCCCCeEEEEEeeCCCCEEEEEEC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVN---RNYICYGLKLGNIRILNIIT-AL--RSLLRGHTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spd---g~~LasGs~DG~IrIWd~~~-~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
....+..+.+|.+.|++++|+++ |++|++|+.||.|+|||+.+ +. ...+.+|.+.|++++| ++++++|++|+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~ 106 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCW-SDDGSKVFTASC 106 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEE-CTTSSEEEEEET
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEE-CcCCCEEEEEcC
Confidence 34567788899999999999999 69999999999999999997 43 3688899999999999 889999999999
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE--eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW--HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~--sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
||.|++||+.++. .+. ...|...+.+++| ++++..+++++.++.+.+|+......
T Consensus 107 dg~v~iwd~~~~~--------------~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------- 163 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ--------------AIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-------- 163 (368)
T ss_dssp TSEEEEEETTTTE--------------EEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--------
T ss_pred CCcEEEEEcCCCC--------------cee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--------
Confidence 9999999999875 222 3447888999999 78877677777777777776543211
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
+..+..| ..+.++.+.. ..+++++.|+.+++||++...... .+.......+.++.+. ++
T Consensus 164 ------------~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 223 (368)
T 3mmy_A 164 ------------MMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF----KD 223 (368)
T ss_dssp ------------SEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE----EC
T ss_pred ------------EEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc----cc
Confidence 3445444 4677777764 478889999999999998864433 3332222366777776 33
Q ss_pred CcE----EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc---ccccccceEEEEeCCCCEEEEEeC
Q 039790 436 HIV----LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR---LEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 436 g~~----L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~---~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.. +++++ .|+.|+|||++.. ....++..+..|...... ......+..++|+++|.+|++++.
T Consensus 224 ~~~~~~~~~~~~-~dg~i~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 293 (368)
T 3mmy_A 224 KQNKPTGFALGS-IEGRVAIHYINPP---------NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293 (368)
T ss_dssp TTSCEEEEEEEE-TTSEEEEEESSCS---------CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET
T ss_pred CCCCCCeEEEec-CCCcEEEEecCCC---------CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc
Confidence 333 77766 9999999999876 222456667766542100 000112346999999999999999
Q ss_pred CCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYG 520 (1395)
Q Consensus 509 Dg~I~iWdl~~g 520 (1395)
||.|++||+..+
T Consensus 294 dg~i~iwd~~~~ 305 (368)
T 3mmy_A 294 DGRFSFWDKDAR 305 (368)
T ss_dssp TSCEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 999999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=266.06 Aligned_cols=301 Identities=9% Similarity=-0.009 Sum_probs=216.5
Q ss_pred cCCCCCee--ee-CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q 039790 176 KVPKGRHL--IG-NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL 252 (1395)
Q Consensus 176 ~sp~Gr~L--~G-~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~ 252 (1395)
|+|||+++ ++ +..|. +. . ....+.+|...|++++|+|+| .++.+.+|+.+......
T Consensus 23 ~SpDG~~iASas~D~TV~--d~----~--------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 23 WARDGTLYLTTFPDISIG--QP----K--------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLN 81 (588)
T ss_dssp ECTTSCEEEECSSSEEEE--EE----C--------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSST
T ss_pred ECCCCCEEEEEcCCceee--cc----c--------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEee
Confidence 78999999 33 33444 21 1 112346899999999999999 46666666654333333
Q ss_pred eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC-----CccEEEEeCCCC
Q 039790 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS-----VHPRVCWHPHKQ 327 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~-----~v~~v~~sp~~~ 327 (1395)
+ .|...|.+++| +|+|.+||+++.||+|+|||... .+..+. |.. .+.+++|+|+|+
T Consensus 82 ~-~~~~~V~~vaw-SPdG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 82 S-QPVCYPRVCKP-SPIDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-SKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp T-SCSCCEEEEEE-CSSSSCEEEEETTSCEEEEETTE----------------EEEECC-CSSCSTTTCEEEEEECSSSS
T ss_pred c-CCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEeCCc----------------eeeecc-CCCccccccEEEEEEcCCCC
Confidence 3 56889999999 99999999999999999999532 333344 443 488999999999
Q ss_pred eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE----cccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 328 EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----GKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
.+++++.++.+.+|+.....-.. + ..-.+..+ .+|.+.|.+++|+|+| |++++.|++|++
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~------~-------~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENT------P-------EFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTC------C-------CCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCcccc------c-------cceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 88888888888888864421000 0 00013444 6788999999999986 888999999999
Q ss_pred EeCCCCce---eEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 404 WDDRKSTP---LAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 404 WDl~sg~~---l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
||+..+.. .+++ .+|.. .|.+|+|+ |.+|++++ +++|++||+.++ +......+|.
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~-~V~svaFs------g~~LASa~--~~tIkLWd~~~~------------~~~~~~~gh~ 265 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRR-KITDLKIV------DYKVVLTC--PGYVHKIDLKNY------------SISSLKTGSL 265 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSS-CCCCEEEE------TTEEEEEC--SSEEEEEETTTT------------EEEEEECSCC
T ss_pred EECCCCccccceeeecccccC-cEEEEEEE------CCEEEEEe--CCeEEEEECCCC------------eEEEEEcCCC
Confidence 99988773 4677 47776 89999996 57888865 699999999876 5433333666
Q ss_pred cccccccccccceEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCe
Q 039790 480 SAELRLEDAFFNQVVAL--NRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHI 557 (1395)
Q Consensus 480 ~~i~~~~~~~~~~~l~~--S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~ 557 (1395)
..+. .+.| ++||..|++++.||+ ++|.++. +.+.... ...+..|+.
T Consensus 266 ~~V~---------~va~~~s~d~~~La~a~edG~-klw~~d~---------------------~~~spd~-~l~a~~d~~ 313 (588)
T 2j04_A 266 ENFH---------IIPLNHEKESTILLMSNKTSY-KVLLEDE---------------------LHVTADN-IIAPYLEKK 313 (588)
T ss_dssp SCCC---------EEEETTCSSCEEEEECSSCEE-EEEESSS---------------------EEEECCC-SSHHHHHHH
T ss_pred ceEE---------EEEeeeCCCCCEEEEEcCCCC-EEEeecc---------------------EEECCCc-eEEEEcCCE
Confidence 6543 3899 999999999999999 9999751 2222222 112345889
Q ss_pred EEEEEcCCCceeeecccc-eEEecCCCCC
Q 039790 558 VQIYCVQTQAIQQYALDL-SQCLPPPLEN 585 (1395)
Q Consensus 558 V~lWdv~t~~i~~~~~~~-~~cl~~s~d~ 585 (1395)
|++|+++.+.+..+...+ ..|+.+++|+
T Consensus 314 v~lW~~~g~~l~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 314 FKKWSTIWNEFNNYETTLVIHGISLSPDG 342 (588)
T ss_dssp HHHTTTTTTSSSSSCCEEEEEEEEECTTS
T ss_pred EEEEECCCCceeeeccceEEEEEEECCCC
Confidence 999999877654333322 5688888887
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-22 Score=238.77 Aligned_cols=267 Identities=11% Similarity=0.085 Sum_probs=199.1
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.++++++.|+.|++||+.++. +..+.+|. .+.+++| ++++.+| ++++.|++|++||+.+++ .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~~~~~d~~i~v~d~~~~~--------------~ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVI-SPDGTKVYVANAHSNDVSIIDTATNN--------------V 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEE-CTTSSEEEEEEGGGTEEEEEETTTTE--------------E
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEE-CCCCCEEEEECCCCCeEEEEECCCCe--------------E
Confidence 467888999999999999885 45566554 5999999 8999876 677799999999998876 2
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..+. .+.+++|+|++..+++++.+ +.+.+|+... ++. +..+. +...+.+++|+
T Consensus 67 ~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~-------------------~~~~~-~~~~~~~~~~s 124 (391)
T 1l0q_A 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTV-------------------AGTVK-TGKSPLGLALS 124 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE-------------------EEEEE-CSSSEEEEEEC
T ss_pred EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeE-------------------EEEEe-CCCCcceEEEC
Confidence 33333333 78899999999988888865 6666666532 211 23333 45578999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
+++..++++++.|+.|++||+.+++++..+..|. .+.+++|+ |+|++|+++++.|+.|++||++++
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~----~dg~~l~~~~~~~~~v~~~d~~~~-------- 190 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVT----PDGTKVYVANFDSMSISVIDTVTN-------- 190 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--SEEEEEEC----TTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC--CcceEEEC----CCCCEEEEEeCCCCEEEEEECCCC--------
Confidence 9984344788889999999999999999998775 58999999 999998666668999999999987
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe---CCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA---KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs---~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
+++..+..+. .+ ..++|+++|.+|++++ .++.|++||+..++ .+..+..+.....
T Consensus 191 ----~~~~~~~~~~-~~---------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~ 248 (391)
T 1l0q_A 191 ----SVIDTVKVEA-AP---------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------ITARIPVGPDPAG 248 (391)
T ss_dssp ----EEEEEEECSS-EE---------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------EEEEEECCSSEEE
T ss_pred ----eEEEEEecCC-Cc---------cceEECCCCCEEEEEecCcCCCcEEEEECCCCe--------EEEEEecCCCccE
Confidence 7777776433 21 2589999999988887 68999999998753 2222322323333
Q ss_pred EecCCC-CcC---cCCCCeEEEEEcCCCcee
Q 039790 543 LTGTTT-DAS---PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 543 ~~~~~~-d~~---~s~dg~V~lWdv~t~~i~ 569 (1395)
+..... ..+ .+.|+.|++||+.++++.
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 333220 112 256899999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=249.46 Aligned_cols=265 Identities=10% Similarity=-0.007 Sum_probs=190.2
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
..++..|++|+.||.|++||+. +|+.+ ..+. ...|.++.|+++ +++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~--~~~~~--------------------------~~~~--~~~v~~~~~~~~---~~s~ 91 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLK--DSKTI--------------------------TTIT--TPNPRTGGEHPA---IISR 91 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEES--SSSCE--------------------------EEEE--EECCCTTCCCCS---EEEE
T ss_pred cCCCCEEEEECCCCcEEEEECC--CCcEE--------------------------EEEe--cCCceeeeeCCc---eEEe
Confidence 4455789999999999999954 22222 1111 133445556666 8999
Q ss_pred EcCCeEEEEECCC---------Cc-eEEe-ccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 235 LKLGNIRILNIIT---------AL-RSLL-RGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 235 s~DG~IrIWd~~~---------~~-~~~l-~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+.|++|++|+... +. +..+ .+|.+.|.+++| ++ ++++|++|+.||+|++||+.+++
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~s~dg~i~~wd~~~~~---------- 160 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYG-HNEVNTEYFIWADNRGTIGFQSYEDDS---------- 160 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEEC-CC---CCEEEEEETTCCEEEEESSSSC----------
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEc-CCCCCCCEEEEEeCCCcEEEEECCCCc----------
Confidence 9999999997663 32 3333 367789999999 88 99999999999999999999887
Q ss_pred ceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCe
Q 039790 302 KIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEI 379 (1395)
Q Consensus 302 ~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V 379 (1395)
.+... ..+...+.+++|+|++..+++++.++.+.+||....... ...+.+ |.+.|
T Consensus 161 ----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-------------------~~~~~~~h~~~v 217 (343)
T 3lrv_A 161 ----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-------------------SSRFPVDEEAKI 217 (343)
T ss_dssp ----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-------------------CEECCCCTTSCE
T ss_pred ----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-------------------ccEEeccCCCCE
Confidence 23333 445567999999999987777777777777776442210 144556 99999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
++++|+|++ .+|++++ |++|+|||++++.++..+.. |.. .+. +++|+ |+|++|++++..|+.|+||++
T Consensus 218 ~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 218 KEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF-KTGTVTYDID----DSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CCEEEEEC----TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccc-cccceEEEEC----CCCCEEEEecCCCCcEEEEEE
Confidence 999999998 8999999 55999999999987766554 333 444 69999 999999997733999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC---CCCEEEEEeCCCeEEEEEcC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR---AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~---dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.... +.|.. ..+ ..+.|++ ++..|++++.|+.+++|-..
T Consensus 291 ~~~~--------~~~~~--------~~~---------~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 291 DKKT--------KNWTK--------DEE---------SALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CTTT--------CSEEE--------EEE---------EECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccc--------cceEe--------cCc---------eeEecCccccccceeEEEecCCceEEEEec
Confidence 7651 12222 111 1355555 78889999999999888643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=237.53 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=167.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCC---Cee----eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC----
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKG---RHL----IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN---- 227 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~G---r~L----~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd---- 227 (1395)
+-+++++.. .|++|+.. ++ +.+ .....|+.+.+.++-.. ..++..=.-|...|..++|+||
T Consensus 55 ~~~~~~~~~-~v~lw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~v~sla~spd~~~~ 126 (356)
T 2w18_A 55 PCIITACED-VVSLWKAL--DAWQWEKLYTWHFAEVPVLQIVPVPDVYN-----LVCVALGNLEIREIRALFCSSDDESE 126 (356)
T ss_dssp EEEEEEESS-EEEEEEES--SSSBEEEEEEEECCSSCEEEECCCTTCCS-----CEEEEECSSSEEEEEEECC------C
T ss_pred cEEEEeccc-eEEEcccC--CCccceeeEEEeccCceeEEEEEcCcccc-----eeeeeeccccccceEEEEECCCcccc
Confidence 466777765 79999954 34 333 22334666655433211 1122221223456666777777
Q ss_pred CCEEEEEEc--------------------CCeEEEEECCC-C-ceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcE
Q 039790 228 RNYICYGLK--------------------LGNIRILNIIT-A-LRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRF 282 (1395)
Q Consensus 228 g~~LasGs~--------------------DG~IrIWd~~~-~-~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV 282 (1395)
+.++++++. |+.|++|++.. | .+..+.+|...+..++| ++ ++.+|++|+.|++|
T Consensus 127 ~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f-s~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 127 KQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF-AEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp CEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE-EEEETSTTEEEEEETTSEE
T ss_pred ccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe-eccCCCCceEEEecCCCcE
Confidence 666666553 88999999844 5 35677889999999999 55 67999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCC---CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGD---SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~---~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|||+.+|+ ++..+..+. ..+.+++|+|++..+++..
T Consensus 206 kIWDl~TGk--------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s-------------------------- 245 (356)
T 2w18_A 206 VIWNLKTGQ--------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLS-------------------------- 245 (356)
T ss_dssp EEEETTTCC--------------EEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------------
T ss_pred EEEECCCCc--------------EEEEEcCCCcceeeeEEEEECCCCCEEEEec--------------------------
Confidence 999999988 333333222 2344455666553222111
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-----cCCCCCCeeEEEEeecCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-----RPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-----~~h~~~~V~sV~fs~~~~p 434 (1395)
| +++...+++|+.|++|++||..+++++.++ .+|.+ .+.+..++
T Consensus 246 ---------------~----------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s----- 294 (356)
T 2w18_A 246 ---------------H----------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK----- 294 (356)
T ss_dssp -------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE-----
T ss_pred ---------------c----------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC-----
Confidence 1 001124688999999999999999988876 47766 55555553
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
+.++++++ .|++|+|||+.++ +++++|.+|...+. ..++|+|||.+|++|+.|++|||
T Consensus 295 -g~~lASgS-~DgTIkIWDl~tG------------k~l~tL~gH~~~vv--------s~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 295 -DHCAAAIL-TSGTIAIWDLLLG------------QCTALLPPVSDQHW--------SFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp -TTEEEEEE-TTSCEEEEETTTC------------SEEEEECCC--CCC--------CEEEECSSSSEEEEECTTSCEEE
T ss_pred -CCEEEEEc-CCCcEEEEECCCC------------cEEEEecCCCCCeE--------EEEEECCCCCEEEEEECCCcEEE
Confidence 67777754 9999999999999 99999998875432 25899999999999999999999
Q ss_pred EEc
Q 039790 515 IHM 517 (1395)
Q Consensus 515 Wdl 517 (1395)
||+
T Consensus 353 Wd~ 355 (356)
T 2w18_A 353 YHY 355 (356)
T ss_dssp EEE
T ss_pred ecC
Confidence 996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=252.09 Aligned_cols=252 Identities=17% Similarity=0.232 Sum_probs=195.8
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN- 229 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~- 229 (1395)
+.+.+. +..|++++.||.|++|++...... ........++..+.+|...|++++|++++.
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~------------------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSK------------------PEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSS------------------CCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccc------------------cCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 344443 468899999999999995421000 000112356778889999999999999998
Q ss_pred EEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 230 YICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+|++|+.||.|+|||+..+ ....+.+|...|.+++|++.++.+|++|+.||.|++||++++...
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 9999999999999999873 145677999999999994337889999999999999999986311
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
. .+..+..|...+++++|+|++..++++|. ++.+.+|+...... .+..+.+|...|+
T Consensus 268 ~---~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------------~~~~~~~h~~~v~ 325 (430)
T 2xyi_A 268 K---PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------------KLHSFESHKDEIF 325 (430)
T ss_dssp S---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------------CSEEEECCSSCEE
T ss_pred c---ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CeEEeecCCCCEE
Confidence 1 12233467888999999999987665555 55566665543221 1567778999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCC--------------CceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRK--------------STPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPL 445 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~s--------------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~ 445 (1395)
+++|+|++..+|++++.||.|+|||++. ..++..+.+|.+ .|++++|+ |++. +|++++ .
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~----p~~~~~l~s~s-~ 399 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWN----PNEPWIICSVS-E 399 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEEC----SSSTTEEEEEE-T
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEEC----CCCCCEEEEEE-C
Confidence 9999999867899999999999999987 367888889987 99999999 9999 566655 9
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
||.|+||++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999999764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-23 Score=242.89 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=175.9
Q ss_pred CEEEEEEecCCCEE-EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC-CCCC
Q 039790 218 LVLGRQIAVNRNYI-CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG-PDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~L-asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg-~~~~ 294 (1395)
.+..+.|.++++++ ++|+.|+.|+|||..++. +..+ .|...|.+++| +++ .++.+ .|+.|+|||+.++ +...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~~~~~v~~v~~-~~~--~~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-KVDAPVKDLFL-SRE--FIVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-ECSSCEEEEEE-CSS--EEEEE-ETTEEEEEESSTTCCBSS
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-ECCCceEEEEE-cCC--EEEEE-EcCEEEEEECCCCceeeE
Confidence 46677888988888 467788999999999885 4444 47779999999 443 45544 4789999999987 4222
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE--EeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML--AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~--g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
.+. . ....+++++ ..++++ +.++.+.+|+.......... +... ......+ +..
T Consensus 135 ~~~-----------~------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~--~~~~---~~~~~~p~~~~ 190 (355)
T 3vu4_A 135 DDI-----------R------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQ--DQGV---QQKAILGKGVL 190 (355)
T ss_dssp CCE-----------E------EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------------CCEE
T ss_pred Eec-----------c------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccc--cccc---cccccCcccEE
Confidence 211 1 122455666 445443 34566777766432210000 0000 0001112 567
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEec-C-CCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLR-P-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~-~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+.+|.+.|++++|+|+| .+|++|+.||+ |+|||+++++++.++. + |.+ .|++++|+ |+|.+|++++ .|++
T Consensus 191 ~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s----~~~~~l~s~s-~d~~ 263 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWS----TDGSKLAVVS-DKWT 263 (355)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEEC----TTSCEEEEEE-TTCE
T ss_pred EEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEEC----CCCCEEEEEE-CCCE
Confidence 88999999999999998 89999999998 9999999999999998 6 887 99999999 9999999977 9999
Q ss_pred EEEEECCCCCCCCC--------CCC-cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLL--------PSD-IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~--------~~~-~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||+..+..... +.. ...|. +..+...... ..-...++|++||.+|++++.||.+++|++..
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWS-LCNFKLSVDK------HVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSSC-SEEEECCCCT------TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEccCCCCcccccccceeeccccccccc-eeEEEeccCC------CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999986521000 000 00010 1111111110 00113689999999999999999999999876
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
+.
T Consensus 337 ~~ 338 (355)
T 3vu4_A 337 DD 338 (355)
T ss_dssp ET
T ss_pred CC
Confidence 54
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=242.91 Aligned_cols=279 Identities=9% Similarity=0.081 Sum_probs=213.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+....+++++.|+.|++||.. .|+.+. . .....+.+|.+.|.+++|+++++++
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~--~g~~~~-------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDIN--SGQTVR-------L--------------SPPEKYKKKLGFVETISIPEHNELW 184 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETT--TCCEEE-------E--------------CCCHHHHTTCCEEEEEEEGGGTEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECC--CCeEee-------e--------------cCcccccccCCceeEEEEcCCCEEE
Confidence 3444455677778888889999843 122110 0 1112456788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
++++.||.|++||+.++ ....+..|...+.+++| ++++.+++ +++.|+.|++||+.+++ .+..
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~d~~~~~--------------~~~~ 249 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY-DPIRDLVYCSNWISEDISVIDRKTKL--------------EIRK 249 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE-ETTTTEEEEEETTTTEEEEEETTTTE--------------EEEE
T ss_pred EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE-cCCCCEEEEEecCCCcEEEEECCCCc--------------EEEE
Confidence 99999999999999986 46677789999999999 88888775 55589999999999876 2233
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEe--------CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAI--------GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~--------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
+.. ...+..++|+|++..+++++. ++.+.+|+... ++ ......|...+.+
T Consensus 250 ~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~--------------------~~~~~~~~~~~~~ 307 (433)
T 3bws_A 250 TDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EK--------------------LIDTIGPPGNKRH 307 (433)
T ss_dssp CCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TE--------------------EEEEEEEEECEEE
T ss_pred ecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-Cc--------------------EEeeccCCCCcce
Confidence 333 344788999999998888875 45666666532 11 1222246668999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--------------CC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--------------NR 447 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--------------Dg 447 (1395)
++|+|++..++++++.|+.|++||+.+++++..+. +.. .+.+++|+ |+|++|++++.. ||
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~-~~~~~~~s----~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD-KPNTIALS----PDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS-SEEEEEEC----TTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC-CCCeEEEc----CCCCEEEEEecCCCccccccccccccce
Confidence 99999985577888999999999999999988887 444 79999999 999998887633 57
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMD 518 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~ 518 (1395)
.|++||+.++ +++..+..+.. + ..++|+++|.+|++++ .|+.|++|+++
T Consensus 382 ~v~~~d~~~~------------~~~~~~~~~~~-~---------~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTD------------TVKEFWEAGNQ-P---------TGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTT------------EEEEEEECSSS-E---------EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCC------------cEEEEecCCCC-C---------ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999888 88888776332 1 3589999999998776 49999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=243.78 Aligned_cols=242 Identities=10% Similarity=0.033 Sum_probs=180.2
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.+..++++|++|+.||.|+|||+.++. +..+. ...|.++.| .++ +++|+.|++|++|+...... ......+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~-~~~---~~s~s~D~~i~~w~~~~~~~--~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGE-HPA---IISRGPCNRLLLLYPGNQIT--ILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCC-CCS---EEEECSTTEEEEEETTTEEE--EEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeee-CCc---eEEecCCCeEEEEEccCceE--EeecCCc
Confidence 345688999999999999999999874 44444 467888888 555 99999999999998774210 0000011
Q ss_pred ceEEEEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCC
Q 039790 302 KIVVAIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGE 378 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~ 378 (1395)
..+. .....|...+.+++|+| ++..+++++.++.+.+|+...... ...+ ..|...
T Consensus 115 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------------------~~~~~~~~~~~ 172 (343)
T 3lrv_A 115 KVLR--EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--------------------YIVHSAKSDVE 172 (343)
T ss_dssp CEEE--EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--------------------EEEECCCSSCC
T ss_pred ceeE--EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--------------------EEEEecCCCCc
Confidence 1111 22335567899999999 888888888888888887643211 2333 345668
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee-EEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL-AVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l-~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|++++|+|++ .+|++|+.||.|+|||+++++.+ ..+.+ |.+ .|++|+|+ |+|.+|++++ |++|+|||+++
T Consensus 173 i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs----~~g~~l~s~~--~~~v~iwd~~~ 244 (343)
T 3lrv_A 173 YSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFA----DNGYWMVVEC--DQTVVCFDLRK 244 (343)
T ss_dssp CCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEEC----TTSSEEEEEE--SSBEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEe----CCCCEEEEEe--CCeEEEEEcCC
Confidence 9999999998 89999999999999999999988 88998 987 99999999 9999999976 44999999998
Q ss_pred CCCCCCCCCcccccEEEEEec---cCcccccccccccceEEEEeCCCCEEEEEeC-CCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLEL---KSSAELRLEDAFFNQVVALNRAGLFLLANAK-KNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~---h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~-Dg~I~iWdl~~g~ 521 (1395)
+ +++.++.. |...+. ...++|+++|.+|++++. |+.|++|++..+.
T Consensus 245 ~------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 245 D------------VGTLAYPTYTIPEFKTG-------TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp S------------TTCBSSCCCBC-----C-------CEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred C------------Ccceeeccccccccccc-------ceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 7 33333322 211110 035999999999999998 9999999997643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-22 Score=240.75 Aligned_cols=248 Identities=12% Similarity=0.107 Sum_probs=194.6
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE------EeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS------LLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~------~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+..+..+ ..+.+++|++++.++++++.|+.|++||+.++... .+.+|.+.|++++| ++++.++++++.|+.
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-PEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-GGGTEEEEEEGGGTE
T ss_pred EEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE-cCCCEEEEEECCCCE
Confidence 34445544 44668999998888888888999999999987533 34589999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|++||+.+++ .+..+..+...+.+++|++++..+++++. ++.+.+|+... +..
T Consensus 193 v~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~----------- 246 (433)
T 3bws_A 193 VHVFDLKTLA--------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLE----------- 246 (433)
T ss_dssp EEEEETTTCC--------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEE-----------
T ss_pred EEEEECCCce--------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcE-----------
Confidence 9999999876 33444567778899999999998888884 56676666532 211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEe--------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS--------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs--------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+. +...+.+++|+|+| .+|++++ .||.|++||+++++.+..+. |.+ .+.+++|+
T Consensus 247 --------~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~--- 311 (433)
T 3bws_A 247 --------IRKTD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPG-NKRHIVSG--- 311 (433)
T ss_dssp --------EEECC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEE-CEEEEEEC---
T ss_pred --------EEEec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCC-CcceEEEC---
Confidence 23333 34569999999998 7888877 58899999999998877764 444 79999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC----
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---- 508 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---- 508 (1395)
|++++++++++.|+.|++||+.++ +++..+... ..+ ..++|+++|.+|++++.
T Consensus 312 -~~g~~l~~~~~~~~~v~v~d~~~~------------~~~~~~~~~-~~~---------~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 312 -NTENKIYVSDMCCSKIEVYDLKEK------------KVQKSIPVF-DKP---------NTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp -SSTTEEEEEETTTTEEEEEETTTT------------EEEEEEECS-SSE---------EEEEECTTSSEEEEEECCCCC
T ss_pred -CCCCEEEEEecCCCEEEEEECCCC------------cEEEEecCC-CCC---------CeEEEcCCCCEEEEEecCCCc
Confidence 999877776669999999999887 777777632 222 25999999998888776
Q ss_pred -----------CCeEEEEEcCCCC
Q 039790 509 -----------KNAIYAIHMDYGP 521 (1395)
Q Consensus 509 -----------Dg~I~iWdl~~g~ 521 (1395)
||.|++||+.+++
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTE
T ss_pred cccccccccccceEEEEEECCCCc
Confidence 5799999997753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=270.44 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=198.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--RN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g~ 229 (1395)
+.+.+++..|++++.||.|++|++... ....+..+.+|.+.|++++|+++ ++
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEEEEEECCTTSCS
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceEEEEecCCCCCC
Confidence 556677788999999999999983310 12445677899999999999988 99
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||.|+|||+.++ ....+.+|...|++++| +++ +.+|++|+.||+|++||+.++...
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~-sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEE-CCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 9999999999999999988 46788899999999999 787 999999999999999999987421
Q ss_pred EEEEEecCCCCCccEEEEeCC-------------CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHPH-------------KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~-------------~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.......|...+.+++|+|. +..+++++.++.+.+|+....... ......
T Consensus 137 -~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~----------------~~~~~~ 199 (753)
T 3jro_A 137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 199 (753)
T ss_dssp -CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc----------------ceeeee
Confidence 11234567888999999994 677777777888888876442211 112466
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc-----eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST-----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~-----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|.+.|++++|+|++ +.+|++|+.||+|+|||++++. .+....+|.+ .|++++|+ |+|.+|++++
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~s----pdg~~l~s~s- 273 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 273 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEEC----TTTCCEEEEC-
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEc----CCCCEEEEEc-
Confidence 78899999999999992 3899999999999999999874 3334445776 99999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.||.|+|||+..+
T Consensus 274 ~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 274 GDNKVTLWKENLE 286 (753)
T ss_dssp SSSCEECCBCCSS
T ss_pred CCCEEEEEecCCC
Confidence 8999999999876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=243.88 Aligned_cols=269 Identities=12% Similarity=0.047 Sum_probs=177.6
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--------
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-------- 226 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-------- 226 (1395)
++....|++++.|++||+|+.... . . .....+..+.+|.+.|++++|+|
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~--~-------~--------------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNE--T-------I--------------ITQHVLGGKSGHHNFVNDIDIADVYSADNRL 154 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETT--E-------E--------------EEEEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCC--c-------c--------------ceeeeecccCCCCCceEEEEEccccccccCC
Confidence 444578999999999999994410 0 0 00123456789999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCccc---cc
Q 039790 227 NRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQI---LG 301 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~---~~ 301 (1395)
||++||+|+.|++|||||+.++ +...+.+|...|.+++| +|++ .+|++|+.||+|++||+.++......... ..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQF-RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEE-ETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEE-CCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 8999999999999999999776 57778889999999999 6665 68999999999999999987643221100 00
Q ss_pred ceEE--------EEEEecCCCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 302 KIVV--------AIQILADGDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 302 ~~i~--------~l~~~~~~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
.+.. .......+...+.++.|+ +++..+++++.++.+.+|+.........+.. .................
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCccccEEEccccccc
Confidence 0111 111234567788899987 6777777777777777776643222111100 00000000111112333
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
..+...+..+.+.+.+..++++|+.||+|+|||+.++.++..+.+|.. .|++|+|+ |||++|++++ ++.+.+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafs----pdG~~LA~as--~~Gv~lv 385 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWH----QDGSHLAIAT--EGSVLLT 385 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEEC----TTSSEEEEEE--SSEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEc----CCCCEEEEEe--CCCeEEE
Confidence 334444444444444435778889999999999999999998888887 99999999 9999999865 4557777
Q ss_pred ECC
Q 039790 453 ASA 455 (1395)
Q Consensus 453 Dl~ 455 (1395)
.+.
T Consensus 386 rL~ 388 (393)
T 4gq1_A 386 RLM 388 (393)
T ss_dssp EEG
T ss_pred EEe
Confidence 653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=234.49 Aligned_cols=286 Identities=9% Similarity=0.060 Sum_probs=202.7
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
.+.+..+++.+.|++|++||.. .| +.+.++..+.. +.+++|+|||++|+++
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~--t~--------------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~ 196 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGD--SK--------------------------KIVKVIDTGYA-VHISRMSASGRYLLVI 196 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETT--TC--------------------------CEEEEEECSTT-EEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEcCCCeEEEEECC--Cc--------------------------eEEEEEecCcc-cceEEECCCCCEEEEE
Confidence 4445677888888899998833 11 23344442222 8899999999999999
Q ss_pred EcCCeEEEEEC--CCCc-eEEeccCCCCeEEEEEeeC----CCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 235 LKLGNIRILNI--ITAL-RSLLRGHTQRVTDMAFFAE----DVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 235 s~DG~IrIWd~--~~~~-~~~l~~H~~~V~slaf~s~----dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+.|+.|++||+ .++. +..+. +...+..++| ++ +|++|++++. +++|.|||..+++ .+..
T Consensus 197 ~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~-sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------~~~~ 263 (543)
T 1nir_A 197 GRDARIDMIDLWAKEPTKVAEIK-IGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------PKQI 263 (543)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEE-CCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------EEEE
T ss_pred CCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEe-CCCcCCCCCEEEEEEccCCeEEEEeccccc-----------ccee
Confidence 99999999999 6664 45555 4556899999 88 9999998884 8999999998876 2222
Q ss_pred EEEec--------CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 307 IQILA--------DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 307 l~~~~--------~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
+...+ +.+..+..+.+++++..++++..+ +.+.+|+....... . +..+ .+..
T Consensus 264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------------~-~~~i-~~~~ 324 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-----------------T-VTSI-GAAP 324 (543)
T ss_dssp EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-----------------E-EEEE-ECCS
T ss_pred ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-----------------e-eEEe-ccCc
Confidence 22211 123356789999998888777765 55666655332110 0 1223 3667
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCCCC-CcEEEEEecCCCeEEEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPHPQ-HIVLITGGPLNRELKIW 452 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~pd-g~~L~s~Gs~Dg~I~IW 452 (1395)
.+.+++|+|+|..+++++..+++|++||+.+++++.++.. |.+ ....+ ++ |+ |..++++...|++|.||
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~----p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG-RGANF-VH----PKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT-TCEEE-EE----TTTEEEEEEEBSSSSEEEEE
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC-CCccc-CC----CCCccEEEeccCCCceEEEE
Confidence 7889999999933445556789999999999999998874 544 33333 34 77 55555543368999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-------CCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-------KKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-------~Dg~I~iWdl~~g~ 521 (1395)
|+.+.. .....|++++++..+..... .+.++|+|++|+++. .+++|.+||+.+++
T Consensus 399 d~~~~~-----~~~~~~~~v~~l~~~g~~~~---------~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 399 GTDPKN-----HPQYAWKKVAELQGQGGGSL---------FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ECCTTT-----CTTTBTSEEEEEECSCSCCC---------CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EeCCCC-----CchhcCeEEEEEEcCCCCce---------EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 998730 01123799999999875433 388999999999987 27799999999865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=223.98 Aligned_cols=211 Identities=16% Similarity=0.081 Sum_probs=156.7
Q ss_pred ccCCCC----CCeEEeecCCCCEEEEeCcCCCCCee-e-e---CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEE
Q 039790 152 PTLPPP----SDSTVVIPSAPPVRLRSSKVPKGRHL-I-G---NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGR 222 (1395)
Q Consensus 152 ~s~p~p----~~~Las~s~Dg~Vrlwd~~sp~Gr~L-~-G---~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~v 222 (1395)
+..+++ ...+++++.+ +++|++ ++|+++ . + +..|..+++.++|. .+..+.+|...+..+
T Consensus 117 la~spd~~~~~~~l~s~g~~--~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~--------~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGNI--KAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGG--------GKENQFLMPPEETIL 184 (356)
T ss_dssp ECC------CCEEEEEEEEE--EEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSC--------EEEEEEECCCSSCEE
T ss_pred EEECCCccccccEEEeCCCe--EEEEec--CCCcEEEecccCCCCcEEEEEECCCCc--------eeeeeccCCCceeeE
Confidence 556666 6788888755 889995 578888 3 3 77888888876553 456777899999999
Q ss_pred EEec---CCCEEEEEEcCCeEEEEECCCCc-eEEeccCC---CCeEEEEEeeCCCCEE------------EEEECCCcEE
Q 039790 223 QIAV---NRNYICYGLKLGNIRILNIITAL-RSLLRGHT---QRVTDMAFFAEDVHLL------------ASASVDGRFF 283 (1395)
Q Consensus 223 a~Sp---dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~---~~V~slaf~s~dg~~L------------aSgs~DgtV~ 283 (1395)
+|++ ++.+|++|+.|++|+|||+.+|. ++++.+|. ..|.+++| +++|.++ ++|+.|++|+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf-SpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY-SEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE-EETTEEEEEEC------------CCEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE-CCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 9999 78999999999999999999984 67887654 36778899 8899877 5577778888
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||..+++ .+. ++.+..
T Consensus 264 lWd~~tgk--------------~l~-----------------------------v~~~~~-------------------- 280 (356)
T 2w18_A 264 VINPKTTL--------------SVG-----------------------------VMLYCL-------------------- 280 (356)
T ss_dssp EEETTTTE--------------EEE-----------------------------EEEECC--------------------
T ss_pred EEECCCCE--------------EEE-----------------------------EEEeec--------------------
Confidence 88877665 110 000000
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
..+|.+.+.+..++ + .++|+|+.||+|||||+.+|+++++|.+|....+.+++|+ |||++|++++
T Consensus 281 --------p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS----PDG~~LaSGS 345 (356)
T 2w18_A 281 --------PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS----GTDSHLLAGQ 345 (356)
T ss_dssp --------CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC----SSSSEEEEEC
T ss_pred --------cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC----CCCCEEEEEE
Confidence 12355555555554 5 7999999999999999999999999999986234569999 9999999965
Q ss_pred cCCCeEEEEEC
Q 039790 444 PLNRELKIWAS 454 (1395)
Q Consensus 444 s~Dg~I~IWDl 454 (1395)
.|++|||||+
T Consensus 346 -~D~TIklWd~ 355 (356)
T 2w18_A 346 -KDGNIFVYHY 355 (356)
T ss_dssp -TTSCEEEEEE
T ss_pred -CCCcEEEecC
Confidence 9999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-20 Score=231.05 Aligned_cols=326 Identities=11% Similarity=0.045 Sum_probs=224.7
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC--CCCCCCCCCccc
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI--TEGPDEEDKPQI 299 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl--~tg~~~~~~~~~ 299 (1395)
.|++++.++++++.|++|++||..++. +..+..+.. +..++| +++|++|++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~-spdg~~l~v~~~d~~V~v~D~~~~t~~-------- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRM-SASGRYLLVIGRDARIDMIDLWAKEPT-------- 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCE--------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEE-CCCCCEEEEECCCCeEEEEECcCCCCc--------
Confidence 378999999999999999999999884 556663333 899999 999999999999999999999 5554
Q ss_pred ccceEEEEEEecCCCCCccEEEEeC----CCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHP----HKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp----~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+. .......++|+| +++++++++. ++.+.+||... .+. +..+..
T Consensus 214 ------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~-------------------~~~i~~ 266 (543)
T 1nir_A 214 ------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEP-------------------KQIVST 266 (543)
T ss_dssp ------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCE-------------------EEEEEC
T ss_pred ------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-ccc-------------------ceeecc
Confidence 222333 234567899999 9998888885 56777776532 211 222221
Q ss_pred ----------cCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 375 ----------HDG-EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 375 ----------h~~-~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
|.. .+..+.|++++..++++...+++|.+||+.+++.+. ++. +.. .+..+.|+ |+|++|++
T Consensus 267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~s----pdg~~l~v 340 (543)
T 1nir_A 267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWD----SSHRYFMT 340 (543)
T ss_dssp CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEEC----TTSCEEEE
T ss_pred cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceEC----CCCCEEEE
Confidence 333 799999999987888899999999999999876555 443 444 79999999 99999888
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEe-CCCeEEEEEcCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
++..+++|.+||+.++ +++.++...... +.... ...++++ |.+++++. .|++|.+|++.+
T Consensus 341 a~~~~~~v~v~D~~tg------------~l~~~i~~g~~p----h~g~g--~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSNKVAVIDSKDR------------RLSALVDVGKTP----HPGRG--ANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEGGGTEEEEEETTTT------------EEEEEEECSSSB----CCTTC--EEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EecCCCeEEEEECCCC------------eEEEeeccCCCC----CCCCC--cccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 7767999999999998 899888752211 00000 1224566 77777775 689999999987
Q ss_pred CCCCCCcceeeeeeeeccc-cEEEEecCCCCc--C-cC--------CCCeEEEEEcCCCcee-ee-----------cccc
Q 039790 520 GPNPASTRMDYIAEFTVTM-PILSLTGTTTDA--S-PD--------GEHIVQIYCVQTQAIQ-QY-----------ALDL 575 (1395)
Q Consensus 520 g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~--~-~s--------~dg~V~lWdv~t~~i~-~~-----------~~~~ 575 (1395)
+... ....+.+..+..+. ..+.+..+. ++ + .+ .++.|.|||+.+++.. +. +...
T Consensus 403 ~~~~-~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 403 KNHP-QYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp TTCT-TTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCc-hhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 3221 11133444444432 222222222 21 1 11 2679999999998654 22 1223
Q ss_pred eEEecCCCCC--eecc----cCCCceEEEeecCCCCcceeec
Q 039790 576 SQCLPPPLEN--AELE----KTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 576 ~~cl~~s~d~--l~~~----~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
..-+.|++++ +.++ .++++.+.+||..|+++.+++.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 4455666665 3322 1345667799999999999888
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-20 Score=223.42 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=174.1
Q ss_pred CCEEEEEEcC------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC---cEEEEECCCCCCCCCCcc
Q 039790 228 RNYICYGLKL------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG---RFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 228 g~~LasGs~D------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg---tV~IWdl~tg~~~~~~~~ 298 (1395)
+..|++++.+ +.|++||+.++....+.+|.+.|.+++| +++|++|++++.|+ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~-Spdg~~la~~s~~~~~~~i~~~d~~tg~------- 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAW-SPDGSKLAYVTFESGRSALVIQTLANGA------- 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCC-------
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEE-cCCCCEEEEEEecCCCcEEEEEECCCCc-------
Confidence 6677777664 7999999998888888999999999999 99999999999886 99999999886
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
.. .+..+...+.+++|+|++..+++++.. ..+++|+... +. ...+..|
T Consensus 215 -------~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~--------------------~~~l~~~ 265 (415)
T 2hqs_A 215 -------VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ--------------------IRQVTDG 265 (415)
T ss_dssp -------EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC--------------------EEECCCC
T ss_pred -------EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC--------------------EEeCcCC
Confidence 22 233455678899999999988866653 2366666532 11 3456678
Q ss_pred CCCeEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--CCeEE
Q 039790 376 DGEITELSMCQWLTTRLASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--NRELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--Dg~I~ 450 (1395)
...+.+++|+||| ++|++++. ++ .|++||+.+++. ..+..|.. .+.+++|+ |||++|++++.. ++.|+
T Consensus 266 ~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~s----pdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 266 RSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVS----SDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp SSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEEC----TTSSEEEEEEECSSCEEEE
T ss_pred CCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE-EEEecCCC-cccCeEEC----CCCCEEEEEECcCCceEEE
Confidence 8899999999999 77777775 45 677889988764 45556665 89999999 999999987744 35899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl~~ 519 (1395)
+||+.++ ++. .+..+. ....++|++||.+|++++.++ .|++||+..
T Consensus 339 ~~d~~~~------------~~~-~l~~~~----------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 339 KQDLATG------------GVQ-VLSSTF----------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp EEETTTC------------CEE-ECCCSS----------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred EEECCCC------------CEE-EecCCC----------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 9999887 543 333332 123589999999999888777 799999864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-18 Score=200.08 Aligned_cols=280 Identities=6% Similarity=0.020 Sum_probs=194.9
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc-C
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK-L 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~-D 237 (1395)
..+++.+.++.|++||.. .|+ .+..+..+...+ +++|+++|++|++++. +
T Consensus 11 ~~~v~~~~~~~v~~~d~~--~~~--------------------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~ 61 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTD--TLE--------------------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFC 61 (331)
T ss_dssp EEEEEEGGGTEEEEEETT--TCC--------------------------EEEEEECCCCEE-EEEECSSSCEEEEEESTT
T ss_pred EEEEEecCCCeEEEEeCc--ccc--------------------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCC
Confidence 456777888889999843 121 122223344556 8999999998777765 8
Q ss_pred CeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCC---cEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDG---RFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg---tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+.|++||..++. ...+..+...+.+++| ++++++|+++..++ .|++||+.+++ .+..+..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~~ 126 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEGQSSMADVDI-TPDDQFAVTVTGLNHPFNMQSYSFLKNK--------------FISTIPI 126 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEECSSCCCCEEE-CTTSSEEEECCCSSSSCEEEEEETTTTE--------------EEEEEEC
T ss_pred CeEEEEECCCCceeEEecccCCCCccceEE-CCCCCEEEEecCCCCcccEEEEECCCCC--------------eEEEEEC
Confidence 999999999885 5566667666666999 89999999555553 89999998876 2222222
Q ss_pred CCCCccEEEEeCCCCeEEEEEeC-Ce-EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIG-NR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~-~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......++|+|+++++++++.+ +. +.+|+....+... ... ...+ .+...+.+++|+|+|..
T Consensus 127 -~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-------------~~~--~~~~-~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 127 -PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF-------------DTG--QEFI-SGGTRPFNITFTPDGNF 189 (331)
T ss_dssp -CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE-------------EEE--EEEE-CSSSSEEEEEECTTSSE
T ss_pred -CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe-------------ecC--Cccc-cCCCCccceEECCCCCE
Confidence 2345789999999988888765 66 7777664322110 000 1222 34556899999999943
Q ss_pred EEEEEeCCCcEEEEeCCCCce---eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLDGTVKIWDDRKSTP---LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~---l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+++++..++.|++||+.+++. +..+..+. .+..++|+ |||++|++++..++.|.+||+.++
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~~~~s----pdg~~l~v~~~~~~~i~~~d~~~~---------- 253 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGTNN--LPGTIVVS----RDGSTVYVLTESTVDVFNFNQLSG---------- 253 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEECSS--CCCCEEEC----TTSSEEEEECSSEEEEEEEETTTT----------
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccCCC--CCceEEEC----CCCCEEEEEEcCCCEEEEEECCCC----------
Confidence 556666789999999999988 88887653 68999999 999988776657889999999887
Q ss_pred cccE--EEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCC
Q 039790 468 SWKC--TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~ 519 (1395)
+. +..+..+... .....+....++|++||.+|+. +..++.|++|++..
T Consensus 254 --~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 254 --TLSFVKSFGHGLLI--DPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp --EEEEEEEEECCCCC--CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred --ceeeeccccccccc--CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 44 4444432100 0011112235899999998754 55677999999975
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=210.18 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=174.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCC---eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCc--E
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLG---NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGR--F 282 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG---~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dgt--V 282 (1395)
+..+.+|...|.+++|+|||++|++++.++ .|++||+.++....+..|.+.+.+++| ++||++|+ +++.||. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~-spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF-SPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEE-CTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEE-cCCCCEEEEEEecCCCceE
Confidence 455667888999999999999999999885 999999999987788889999999999 99999887 6666665 9
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
++||+.+++ ...+..+...+..++|+|++..+++++..+ .+++|+... +.
T Consensus 250 ~~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~----------- 302 (415)
T 2hqs_A 250 YVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA----------- 302 (415)
T ss_dssp EEEETTTCC---------------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-----------
T ss_pred EEEECCCCC---------------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-----------
Confidence 999998876 123445567788999999999888887644 455555432 11
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
...+..|...+.+++|+|+| ++|++++.+ +.|++||+.++++ ..+..|. .+.+++|+ |||
T Consensus 303 ---------~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~s----pdg 365 (415)
T 2hqs_A 303 ---------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF--LDETPSLA----PNG 365 (415)
T ss_dssp ---------CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-EECCCSS--SCEEEEEC----TTS
T ss_pred ---------EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-EEecCCC--CcCCeEEc----CCC
Confidence 23344577789999999999 788777764 5899999998876 4566553 79999999 999
Q ss_pred cEEEEEecCCC---eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 437 IVLITGGPLNR---ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 437 ~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++|++++ .|+ .|++||+.. .++..+..+.+.+. .++|+|.-
T Consensus 366 ~~l~~~s-~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~---------~~~~~~~~ 409 (415)
T 2hqs_A 366 TMVIYSS-SQGMGSVLNLVSTDG-------------RFKARLPATDGQVK---------FPAWSPYL 409 (415)
T ss_dssp SEEEEEE-EETTEEEEEEEETTS-------------CCEEECCCSSSEEE---------EEEECCCC
T ss_pred CEEEEEE-cCCCccEEEEEECCC-------------CcEEEeeCCCCCCc---------CCcccccc
Confidence 9999877 455 899999864 55667777765543 37777653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-18 Score=196.14 Aligned_cols=255 Identities=11% Similarity=0.133 Sum_probs=174.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC-CeEEEEECC--CCce---EEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL-GNIRILNII--TALR---SLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D-G~IrIWd~~--~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl 287 (1395)
|...+.+++|+++|++|++++.+ +.|++|++. ++.. ..+..+. .+.+++| ++++++|++++. ++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST-DHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE-CTTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE-cCCCCEEEEEecCCCeEEEEEC
Confidence 55678889999999999999886 999999998 5532 3344333 8899999 899998876665 889999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
..+. ....+..... ...+..++|+|++..+++++ .++.+.+|+....+.....
T Consensus 114 ~~~~-----------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------- 167 (343)
T 1ri6_A 114 EDGL-----------PVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ-------------- 167 (343)
T ss_dssp ETTE-----------EEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE--------------
T ss_pred CCCc-----------cccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee--------------
Confidence 6332 1112233332 34577899999999888888 6777888776432221000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEec----CCC-CCCeeEEEEeecCCCCCc
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLR----PYD-GHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~----~h~-~~~V~sV~fs~~~~pdg~ 437 (1395)
............+.+++|+|++..+++++..++.|++||+.. +.. +..+. ++. ...+.+++|+ |+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~ 243 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT----PDGR 243 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC----TTSS
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC----CCCC
Confidence 000112223457889999999933445555899999999953 432 33332 111 1257789999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWd 516 (1395)
+|++++..|+.|++||+.... ...+.+..+..+.. + ..++|+++|.+|++++ .++.|++|+
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~-~---------~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDG--------SVLSKEGFQPTETQ-P---------RGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTS--------CCEEEEEEEECSSS-C---------CCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCC--------CceEEeeeecCCCc-c---------ceEEECCCCCEEEEecCCCCeEEEEE
Confidence 888767689999999997320 12245555554432 2 2489999999888777 689999997
Q ss_pred cCC
Q 039790 517 MDY 519 (1395)
Q Consensus 517 l~~ 519 (1395)
++.
T Consensus 306 ~d~ 308 (343)
T 1ri6_A 306 IVG 308 (343)
T ss_dssp EET
T ss_pred EcC
Confidence 753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=234.80 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=182.5
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-----------CCCCeEEEEEee-CCCCEEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-----------HTQRVTDMAFFA-EDVHLLASAS 277 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-----------H~~~V~slaf~s-~dg~~LaSgs 277 (1395)
..+..|. .+.+++|++||++|+++. ++.|++||+..+.+..+.+ |...|.+++| + ++|++|++++
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~-S~pdG~~la~~~ 315 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDF-SPLDGDLIAFVS 315 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEE-EECGGGCEEEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeee-cCCCCCEEEEEE
Confidence 3444454 356679999999999984 8999999996665555555 4457999999 8 9999999888
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEeCCeEE-EEEcCCCCccccccCC
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAIGNRIL-KIDSNRVGKGERFSAE 355 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~~~~ii-~~d~~~~~~~~~~s~~ 355 (1395)
++.|++|++..+. ... +..+.. .+..++|+ ++..++.++.+..+. +|+.. .+.
T Consensus 316 -~~~i~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~------- 370 (1045)
T 1k32_A 316 -RGQAFIQDVSGTY--------------VLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGK------- 370 (1045)
T ss_dssp -TTEEEEECTTSSB--------------EEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCC-------
T ss_pred -cCEEEEEcCCCCc--------------eEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCC-------
Confidence 7899999998765 112 233444 67789999 887777776655555 44432 111
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
...+.+|...+.+++|+||| ++|++++.|+.|++||+.+++....+.+|.+ .+.+++|+ ||
T Consensus 371 -------------~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~S----pD 431 (1045)
T 1k32_A 371 -------------AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTIS----DN 431 (1045)
T ss_dssp -------------EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEEC----TT
T ss_pred -------------ceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEEC----CC
Confidence 23334688899999999998 8999999999999999999998888878887 89999999 99
Q ss_pred CcEEEEEecCC---------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 436 HIVLITGGPLN---------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 436 g~~L~s~Gs~D---------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
|++|++++..+ +.|++||+.++ + +..+..+.... ..++|++||.+|+++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------------~-~~~l~~~~~~~---------~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------------K-IFAATTENSHD---------YAPAFDADSKNLYYL 489 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT------------E-EEECSCSSSBE---------EEEEECTTSCEEEEE
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCC------------c-EEEeeCCCccc---------CCceEcCCCCEEEEE
Confidence 99998876322 49999999876 5 44555444322 248899999999999
Q ss_pred eCCCeEEEEEcC
Q 039790 507 AKKNAIYAIHMD 518 (1395)
Q Consensus 507 s~Dg~I~iWdl~ 518 (1395)
+.++...+|+..
T Consensus 490 s~~~~~~~~~~~ 501 (1045)
T 1k32_A 490 SYRSLDPSPDRV 501 (1045)
T ss_dssp ESCCCCCEECSS
T ss_pred ecccCCcCcchh
Confidence 988877777643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=194.08 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=170.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC-Cce-EEeccC-CCCeEEEEEeeCCCCEEEEEE--CCCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT-ALR-SLLRGH-TQRVTDMAFFAEDVHLLASAS--VDGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~-~~~-~~l~~H-~~~V~slaf~s~dg~~LaSgs--~DgtV~IW 285 (1395)
.+..|...|.+++|+|+|++|++++ ++.|++||+.+ +.. ..+.+| ...|.+++| ++++++|++++ .++.++||
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI-SPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE-CTTSSEEEEEECTTTSSCEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE-CCCCCEEEEEEeCCCCcceEE
Confidence 3445778899999999999999987 78999999998 753 344455 478999999 89999999999 44455555
Q ss_pred EC--CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NI--TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl--~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.+ .++. ...+..+ ..+..++|+|++..+++++ .++.+.+|.......
T Consensus 114 ~~~~~~~~---------------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-------------- 163 (297)
T 2ojh_A 114 LLPSTGGT---------------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-------------- 163 (297)
T ss_dssp EEETTCCC---------------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--------------
T ss_pred EEECCCCc---------------eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC--------------
Confidence 54 4433 1112222 2367889999999888555 455554444321111
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+..|...+.+++|+|+| .+|+.++ .|+.++||++. .+..+..+..|.. .+.+++|+ |+|++|+
T Consensus 164 -----~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~ 232 (297)
T 2ojh_A 164 -----VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPS----PSGDKVV 232 (297)
T ss_dssp -----CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEEC----TTSSEEE
T ss_pred -----cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEEC----CCCCEEE
Confidence 134455688899999999998 6666555 69999999987 5667788888876 89999999 9999998
Q ss_pred EEecCC-----------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 441 TGGPLN-----------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 441 s~Gs~D-----------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
+++ .+ +.|++||+.++ ....+..+..|...+. .+.|+++|.+|++++.+
T Consensus 233 ~~~-~~~~~~~~~~~~~~~l~~~d~~~~----------~~~~~~~~~~~~~~~~---------~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 233 FVS-YDADVFDHPRDLDVRVQLMDMDGG----------NVETLFDLFGGQGTMN---------SPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEE-EETTCCSCCSSEEEEEEEEETTSC----------SCEEEEEEEESTTTSC---------SCCBCTTSSEEEEEEEC
T ss_pred EEE-cCCCCCcccccCceEEEEEecCCC----------CceeeeccCCCCcccc---------cceECCCCCEEEEEEec
Confidence 876 43 57999999876 1133444445554433 37889999999888765
Q ss_pred C
Q 039790 510 N 510 (1395)
Q Consensus 510 g 510 (1395)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-18 Score=222.28 Aligned_cols=297 Identities=10% Similarity=0.094 Sum_probs=196.1
Q ss_pred cccCCCCCCeEEeecC-CC-----CEEEEeCcCCCCCee--e-eCceEEEEEeccCCCccCcc--cccceeeeeCCCCCE
Q 039790 151 SPTLPPPSDSTVVIPS-AP-----PVRLRSSKVPKGRHL--I-GNHSVYDIDVRLDGEVQPQL--EVTPITKYISDPGLV 219 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~-Dg-----~Vrlwd~~sp~Gr~L--~-G~~~v~~v~~~~~G~~~~~~--~~~~i~~l~~h~~~V 219 (1395)
.+.+++++..|++++. |+ .|++|++.. |+.. . +.... ++|..+..- .......+. ....|
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~v 111 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVL------PGTETLSDEEKARRERQRIA-AMTGI 111 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC---------------------------CCEES
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcc------cccccccchhhhhhhhhhhc-cccCc
Confidence 3678889999999988 88 899999543 3322 1 10000 000000000 000001111 11346
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.+++|||||++|++++. +.|++||+.++ ....+..|...+.+++| ++||++|+.++. +.|++||+.+++
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~-SPDG~~la~~~~-~~i~~~d~~~g~----- 183 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKL-SPKGGFVSFIRG-RNLWVIDLASGR----- 183 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEE-CTTSSEEEEEET-TEEEEEETTTTE-----
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccC-CCCCCEEEEEeC-CcEEEEecCCCC-----
Confidence 78899999999999987 99999999998 78888889999999999 999999999884 699999998875
Q ss_pred cccccceEEEEEEecCCCC----------------CccEEEEeCCCCeEEEEEeCC------------------------
Q 039790 297 PQILGKIVVAIQILADGDS----------------VHPRVCWHPHKQEILMLAIGN------------------------ 336 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~----------------~v~~v~~sp~~~~lla~g~~~------------------------ 336 (1395)
...+...+.. .+..+.|+|++..|++++.++
T Consensus 184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ---------EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 1122222221 146799999999888887654
Q ss_pred ---------eEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeC-----CCc
Q 039790 337 ---------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASASL-----DGT 400 (1395)
Q Consensus 337 ---------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~-----Dg~ 400 (1395)
.+.+|+....+. ...... .|...+.+++| ||| ++|+.++. ++.
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQ-------------------TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLD 313 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCC-------------------CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEE
T ss_pred CCCCCCCeeEEEEEECCCCCc-------------------eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEE
Confidence 222222211011 011111 47788999999 999 67776654 568
Q ss_pred EEEEeCCCCceeEEecCCCCC---CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 401 VKIWDDRKSTPLAVLRPYDGH---PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 401 IrIWDl~sg~~l~tl~~h~~~---~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
|++||+.++++...+..+... .+.+++|+ |||+++++++ .|+.++||.+... .. ...+..
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s----pdg~~~~~~~-~~g~~~l~~~~~~-----------~~-~~~l~~ 376 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFL----DDGSILWSSE-RTGFQHLYRIDSK-----------GK-AAALTH 376 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEEC----TTSCEEEEEC-TTSSCEEEEECSS-----------SC-EEESCC
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEEC----CCCeEEEEec-CCCccEEEEEcCC-----------CC-eeeeee
Confidence 999999999988877766532 34689999 9999777654 8998999987632 03 445544
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEE-eCCC--eEEEEEcCC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKN--AIYAIHMDY 519 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg--~I~iWdl~~ 519 (1395)
+...+. ..+.|+++|.+|+.. +.++ .++||++..
T Consensus 377 ~~~~v~--------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 377 GNWSVD--------ELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SSSCEE--------EEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred cceEEE--------eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 432221 234699999877554 4455 899999875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=187.40 Aligned_cols=241 Identities=11% Similarity=0.033 Sum_probs=181.3
Q ss_pred CCEEEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLK-------LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~-------DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~ 288 (1395)
..+.+++|+++|++|++++. ++.|.+||..++.......+...+.+++| +++++++ +++..++.|++||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATI-NNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEE-ETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEE-CCCCCEEEEEecCCCEEEEEeCC
Confidence 56788999999999988874 56899999998864333334456889999 8898854 555668999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCC---------CccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCC
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDS---------VHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~---------~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
+++ .+..+..+.. ....++|+++++.+++++. ++.+.+|+.... +.
T Consensus 120 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~-------- 176 (353)
T 3vgz_A 120 TGE--------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KL-------- 176 (353)
T ss_dssp TCC--------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EE--------
T ss_pred CCe--------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ce--------
Confidence 887 1222222211 1567999999998888874 456777765321 11
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCC
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~ 433 (1395)
...+..+...+.+++|+|+| ++|++++.++.|.+||+.+++.+..+.. +.. .+.+++|+
T Consensus 177 -----------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s---- 239 (353)
T 3vgz_A 177 -----------KTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLD---- 239 (353)
T ss_dssp -----------EEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEE----
T ss_pred -----------EEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEEC----
Confidence 34444456668899999998 7888888999999999999998888764 443 68899999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAI 512 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I 512 (1395)
|+|++|++++..++.|.+||+.++ +.+..+..... ..++|+++|.+| +++..++.|
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-----------~~~~~s~dg~~l~v~~~~~~~v 296 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNG------------NILAKVAAPES-----------LAVLFNPARNEAYVTHRQAGKV 296 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTC------------CEEEEEECSSC-----------CCEEEETTTTEEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC------------cEEEEEEcCCC-----------ceEEECCCCCEEEEEECCCCeE
Confidence 999988887766799999999888 77777765332 138899999955 455579999
Q ss_pred EEEEcCCCC
Q 039790 513 YAIHMDYGP 521 (1395)
Q Consensus 513 ~iWdl~~g~ 521 (1395)
++||+.+++
T Consensus 297 ~~~d~~~~~ 305 (353)
T 3vgz_A 297 SVIDAKSYK 305 (353)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCe
Confidence 999987753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=216.97 Aligned_cols=306 Identities=10% Similarity=0.040 Sum_probs=192.8
Q ss_pred CCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCC---CEEEEE
Q 039790 147 HQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPG---LVLGRQ 223 (1395)
Q Consensus 147 ~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~---~V~~va 223 (1395)
.....+.+++++..+++ +.||.|++|+... | .....+..|.. .|.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g--------------------------~~~~~~~~~~~~~~~v~~~~ 67 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVET--N--------------------------TSTVLIEGKKIESLRAIRYE 67 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGG--C--------------------------CCEEEECTTTTTTTTCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCC--C--------------------------cEEEEeccccccccccceEE
Confidence 33444677888886665 7889999999441 1 11223333433 488999
Q ss_pred EecCCCEEEEEEcC---------CeEEEEECCCCceEEec---cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 224 IAVNRNYICYGLKL---------GNIRILNIITALRSLLR---GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 224 ~Spdg~~LasGs~D---------G~IrIWd~~~~~~~~l~---~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|||||++|++++.+ +.|++||+.++....+. +|...|..++| ++||++|+.++. +.|++||+.+++
T Consensus 68 ~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~-SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW-GPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB-CSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEE-CCCCCEEEEEEC-CeEEEEECCCCc
Confidence 99999999999874 78889999998654444 45556999999 999999999986 799999999876
Q ss_pred CCCCCcccccceEEEEEEecCCCC------------------CccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCc----
Q 039790 292 DEEDKPQILGKIVVAIQILADGDS------------------VHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGK---- 348 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~------------------~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~---- 348 (1395)
. ..+...+.. .+..+.|+|++..|+.+..++ .+..|+......
T Consensus 146 ~--------------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 211 (723)
T 1xfd_A 146 A--------------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (723)
T ss_dssp C--------------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred e--------------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence 2 222222222 236899999999888877653 222222110000
Q ss_pred ---cccccCCC----CCccCccccccc--eEEEcc------cCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCC
Q 039790 349 ---GERFSAEE----PLKCPVDELING--VQLVGK------HDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKS 409 (1395)
Q Consensus 349 ---~~~~s~~~----~~~~~~~~~~~~--~~~l~~------h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg 409 (1395)
...|...+ ...+.+|+...+ ...+.. |...+.+++|+||| ++|++.+. +..|++||+.++
T Consensus 212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTC
T ss_pred cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCC
Confidence 00000000 001222222222 133333 36679999999999 77766653 357999999999
Q ss_pred ceeEEecCCCCCCee----EEEEeecCCCCCcEEEEE-ecCCC------eEEEEEC-CCCCCCCCCCCcccccEEEEEec
Q 039790 410 TPLAVLRPYDGHPVN----CVTFLIGPHPQHIVLITG-GPLNR------ELKIWAS-AEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~----sV~fs~~~~pdg~~L~s~-Gs~Dg------~I~IWDl-~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
++...+..+....+. .++|+ |||++|+.. +..|+ .|.+||+ ..++ ..+...+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~~~~~l~~ 356 (723)
T 1xfd_A 291 VCTKKHEDESEAWLHRQNEEPVFS----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS----------NDNIQSITS 356 (723)
T ss_dssp CEEEEEEEECSSCCCCCCCCCEEC----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS----------SCCCCBSCC
T ss_pred cceEEEEeccCCEEeccCCCceEc----CCCCeEEEEEecccCCCcceeEEEEEeccCCCC----------ccceeEeec
Confidence 887776543322443 89999 999988765 44677 5666773 3330 001222221
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCCC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDYG 520 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~g 520 (1395)
.... +...++|++||.+|+..+.+ +.++||++..+
T Consensus 357 ~~~~--------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 357 GDWD--------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSC--------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCeE--------EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 1111 11236899999999776655 78999998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-17 Score=213.01 Aligned_cols=327 Identities=11% Similarity=0.079 Sum_probs=208.1
Q ss_pred CCCEEEEEEecCCCEEEEEEc-CC-----eEEEEECCCCce-EEeccCCC------------------------CeEEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLK-LG-----NIRILNIITALR-SLLRGHTQ------------------------RVTDMA 264 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~-DG-----~IrIWd~~~~~~-~~l~~H~~------------------------~V~sla 264 (1395)
...|.+++|+|||++|++++. || .|++||+.++.. ..+..|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 467899999999999999998 88 999999999854 34443332 388999
Q ss_pred EeeCCCCEEEEEECCCcEEEEECCCC---CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE
Q 039790 265 FFAEDVHLLASASVDGRFFIWNITEG---PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI 341 (1395)
Q Consensus 265 f~s~dg~~LaSgs~DgtV~IWdl~tg---~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~ 341 (1395)
| ++||++|++++. +.|++||+.++ ... .+..+...+..++|+|+|+.++.+. ++.+.+|
T Consensus 116 ~-SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 116 W-SPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp E-CTTSSEEEEEET-TEEEEEESSSCSTTSCC---------------BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred E-CCCCCEEEEEeC-CcEEEEECCCCCcceEE---------------EcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 9 999999999987 89999999987 411 1223455678899999998766654 5678777
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEccc--------CCCeEEEEEecCCCcEEEEEeCCC--------------
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH--------DGEITELSMCQWLTTRLASASLDG-------------- 399 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h--------~~~V~slafspdg~~~LaSgs~Dg-------------- 399 (1395)
+... +....+...+. ...+.++ .+.+.+++|+||| ++|++++.|+
T Consensus 178 d~~~-g~~~~~~~~~~-----------~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 178 DLAS-GRQMQLTADGS-----------TTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp ETTT-TEEEECCCCCC-----------SSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSS
T ss_pred ecCC-CCEEEeccCCc-----------cceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCC
Confidence 7643 21100000000 0000111 1125789999999 7888887765
Q ss_pred -------------------cEEEEeCCC-CceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEec----CCCeEEEEE
Q 039790 400 -------------------TVKIWDDRK-STPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGP----LNRELKIWA 453 (1395)
Q Consensus 400 -------------------~IrIWDl~s-g~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs----~Dg~I~IWD 453 (1395)
.|++||+.+ +++..... .|.. .+.+++| |||++|++++. .+..|++||
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~-----pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDI-YLARVNW-----RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSE-EEEEEEE-----EETTEEEEEEEETTSSEEEEEEEE
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcce-EEEEEEe-----CCCCEEEEEEecccCCeEEEEEEE
Confidence 899999998 87665543 3555 8999999 47888887652 357899999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+.++ ++...+..+...... ....+.|++||+++++++.|+.++||.++... . ...+..
T Consensus 319 ~~~g------------~~~~~~~~~~~~~~~-----~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~--~~~l~~ 376 (741)
T 2ecf_A 319 LASN------------QQRVLAHETSPTWVP-----LHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---K--AAALTH 376 (741)
T ss_dssp TTTC------------CEEEEEEEECSSCCC-----CCSCCEECTTSCEEEEECTTSSCEEEEECSSS---C--EEESCC
T ss_pred CCCC------------ceEEEEEcCCCCcCC-----cCCceEECCCCeEEEEecCCCccEEEEEcCCC---C--eeeeee
Confidence 9988 777766655421000 11247899999999999999988888876321 1 222222
Q ss_pred eeccc-cEEEEecCCCCcC---cCCCC--eEEEEEcCC-Cc-eeeec-ccceEEecCCCCC--eecccCC---CceEEEe
Q 039790 534 FTVTM-PILSLTGTTTDAS---PDGEH--IVQIYCVQT-QA-IQQYA-LDLSQCLPPPLEN--AELEKTD---SNATRAF 599 (1395)
Q Consensus 534 f~~~~-~ils~~~~~~d~~---~s~dg--~V~lWdv~t-~~-i~~~~-~~~~~cl~~s~d~--l~~~~sd---~~v~~iW 599 (1395)
..... .+..|+... ..+ .+.++ .++||++.. +. +..+. .....++.+++|+ +++..++ ...+.+|
T Consensus 377 ~~~~v~~~~~~s~dg-~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 377 GNWSVDELLAVDEKA-GLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp SSSCEEEEEEEETTT-TEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cceEEEeEeEEeCCC-CEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 11111 111233322 111 12233 889998865 33 33322 2233456677765 4433322 2345677
Q ss_pred ecC
Q 039790 600 DVA 602 (1395)
Q Consensus 600 D~~ 602 (1395)
|..
T Consensus 456 ~~~ 458 (741)
T 2ecf_A 456 RAN 458 (741)
T ss_dssp ETT
T ss_pred EcC
Confidence 764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-17 Score=187.70 Aligned_cols=235 Identities=11% Similarity=0.084 Sum_probs=163.1
Q ss_pred EEecCCCE-EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCccc
Q 039790 223 QIAVNRNY-ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 223 a~Spdg~~-LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
.|..++++ +++++.++.|++||..++. ...+..+...+ +++| ++++++|++++. ++.|++||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~-s~dg~~l~~~~~~~~~i~~~d~~~~~~------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAI-TSDCSNVVVTSDFCQTLVQIETQLEPP------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEE-CSSSCEEEEEESTTCEEEEEECSSSSC-------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEE-cCCCCEEEEEeCCCCeEEEEECCCCce-------
Confidence 35555555 6677889999999999885 34555555666 9999 899986666665 89999999998761
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.......+.....+++|+|++..+++...++ .+.+|+... +.. +..+. +.
T Consensus 75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~-------------------~~~~~-~~ 127 (331)
T 3u4y_A 75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKF-------------------ISTIP-IP 127 (331)
T ss_dssp ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEE-------------------EEEEE-CC
T ss_pred ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-CCe-------------------EEEEE-CC
Confidence 0223333444444599999999888433332 677776532 211 23333 34
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCcee-----EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPL-----AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l-----~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
....+++|+|+|..+++++..++. |++||+.....+ ..+. +.. .+..++|+ |+|++|++++..++.|+
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~s----pdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-GGT-RPFNITFT----PDGNFAFVANLIGNSIG 201 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-SSS-SEEEEEEC----TTSSEEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-CCC-CccceEEC----CCCCEEEEEeCCCCeEE
Confidence 567999999999546666677788 999998764333 2232 333 68999999 99998877776799999
Q ss_pred EEECCCCCCCCCCCCcccccE---EEEEeccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKC---TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~---l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~ 521 (1395)
+||+.++ +. +..+...... ..++|++||++|+.+ ..++.|++||+.+++
T Consensus 202 v~d~~~~------------~~~~~~~~~~~~~~~----------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 202 ILETQNP------------ENITLLNAVGTNNLP----------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEECSST------------TSCEEEEEEECSSCC----------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred EEECCCC------------cccceeeeccCCCCC----------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 9999887 55 6666543211 248999999966554 467889999998753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=213.17 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=170.8
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCC---CeEEEEEeeCCCCEEEEEECC---------CcEEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQ---RVTDMAFFAEDVHLLASASVD---------GRFFI 284 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~---~V~slaf~s~dg~~LaSgs~D---------gtV~I 284 (1395)
.+.+++|++||+++++ +.||.|++||+.++. ...+.+|.. .|.+++| ++||++|++++.+ +.|++
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~-SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI-SPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE-CTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEE-CCCCCEEEEEecCccceeecceeeEEE
Confidence 3567889999998876 789999999999985 455566654 4999999 9999999999875 78889
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+++. ..+.....+...+..++|+|+|..++.++. +.+++|+... +..
T Consensus 96 ~d~~~~~~------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~-g~~--------------- 146 (723)
T 1xfd_A 96 SKIPHGDP------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG-KQA--------------- 146 (723)
T ss_dssp EESSSCCC------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-SCC---------------
T ss_pred EECCCCce------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC-Cce---------------
Confidence 99998862 011111233445778999999987776654 6777776543 211
Q ss_pred cccceEEEcccCC------------------CeEEEEEecCCCcEEEEEeCCC---------------------------
Q 039790 365 LINGVQLVGKHDG------------------EITELSMCQWLTTRLASASLDG--------------------------- 399 (1395)
Q Consensus 365 ~~~~~~~l~~h~~------------------~V~slafspdg~~~LaSgs~Dg--------------------------- 399 (1395)
..+...+.. .+.+++|+||| ++|++++.|+
T Consensus 147 ----~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 147 ----IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp ----EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred ----EEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 122222222 23789999999 7888887653
Q ss_pred -------cEEEEeCCCCceeEEecCC------CCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCC
Q 039790 400 -------TVKIWDDRKSTPLAVLRPY------DGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 400 -------~IrIWDl~sg~~l~tl~~h------~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~ 463 (1395)
.|++||+.++++...+..+ .. .+.+++|+ |||++|++... .+..|++||+.++
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~-~~~~~~~S----pDg~~l~~~~~~~~~~~~i~~~d~~~g------ 290 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY-YITMVKWA----TSTKVAVTWLNRAQNVSILTLCDATTG------ 290 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE-EEEEEEES----SSSEEEEEEEETTSCEEEEEEEETTTC------
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccc-eeEEEEEe----CCCeEEEEEEcCCCCeEEEEEEeCCCC------
Confidence 7999999999877777765 34 78999999 99998877542 2368999999888
Q ss_pred CCcccccEEEEEeccC-cccccccccccceEEEEeCCCCEEEE--EeCCC------eEEEEE
Q 039790 464 SDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGLFLLA--NAKKN------AIYAIH 516 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg------~I~iWd 516 (1395)
++...+..+. ..+.. ....+.|++||++|+. +..++ .|++||
T Consensus 291 ------~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 291 ------VCTKKHEDESEAWLHR-----QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ------CEEEEEEEECSSCCCC-----CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred ------cceEEEEeccCCEEec-----cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 7766665432 11110 0124789999997664 45666 466676
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-17 Score=209.33 Aligned_cols=255 Identities=12% Similarity=0.106 Sum_probs=170.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-----CC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-----GP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-----g~ 291 (1395)
..|.+++|+|| ++++++. ++.|++||+.++....+..|...+.+++| ++||++|+++ .|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDF-SPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEE-CTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcC-CCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56899999999 7777664 59999999999987777778888999999 9999999985 679999999998 65
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---------------------------------CeE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---------------------------------NRI 338 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---------------------------------~~i 338 (1395)
...............+.....+...+..+.|+|++..|++++.+ ..+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 21110000000000000000111124789999999988887732 233
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCce
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKSTP 411 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg~~ 411 (1395)
.+|+... +.. .... ..|...+.+++|+||| ++|++++.|+ .|++||+.+++.
T Consensus 238 ~~~d~~~-~~~-------------------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 238 GIYHLAT-GKT-------------------VYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp EEEETTT-TEE-------------------EECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred EEEECCC-Cce-------------------EeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 3333321 110 1111 2467789999999999 7888888776 899999999944
Q ss_pred eEEec-C-CCC--CCeeEEEEeecCCC--CCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 412 LAVLR-P-YDG--HPVNCVTFLIGPHP--QHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 412 l~tl~-~-h~~--~~V~sV~fs~~~~p--dg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+..+. . +.. ..+.+++|+ | ||++|+++. .|+.++||++. ++ ..+..+..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~s----p~~dg~~l~~~~-~~g~~~l~~~~~~~------------~~~~~l~~~~~~v-- 357 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFL----PGSNNQFIWQSR-RDGWNHLYLYDTTG------------RLIRQVTKGEWEV-- 357 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEEC----TTCSSEEEEEEC-TTSSCEEEEEETTS------------CEEEECCCSSSCE--
T ss_pred eeEEEEccCCCeECccCCceee----cCCCCEEEEEEc-cCCccEEEEEECCC------------CEEEecCCCCeEE--
Confidence 44332 2 221 024789999 9 999887755 89999999886 44 5566665443221
Q ss_pred ccccccceEEEEeCCCCEEEEEeC-CC----eEEEEEcCCCC
Q 039790 485 LEDAFFNQVVALNRAGLFLLANAK-KN----AIYAIHMDYGP 521 (1395)
Q Consensus 485 ~~~~~~~~~l~~S~dg~~LaSgs~-Dg----~I~iWdl~~g~ 521 (1395)
...++|+++|..|+.++. ++ .|+.|++..+.
T Consensus 358 ------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 358 ------TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ------EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ------EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 123789999987766554 44 67777776643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=183.02 Aligned_cols=287 Identities=11% Similarity=0.114 Sum_probs=180.6
Q ss_pred EEEEEEcCCeEEEEECC-CCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECC-CcEEEEECC--CCCCCCCCcccccce
Q 039790 230 YICYGLKLGNIRILNII-TAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVD-GRFFIWNIT--EGPDEEDKPQILGKI 303 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~-~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-gtV~IWdl~--tg~~~~~~~~~~~~~ 303 (1395)
++++++.|+.|++||+. ++. ......|...+.+++| ++++++|++++.+ +.|++|++. ++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~v~~~~~~~~~~~------------ 73 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGA------------ 73 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEE-CTTSSEEEEEETTTTEEEEEEECTTTCC------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEE-CCCCCEEEEeecCCCeEEEEEecCCCCc------------
Confidence 34444779999999996 342 2333457788999999 8999999888887 999999998 443
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
...+..+..+. .+..++|+|++..+++++. ++.+.+|+.. .+.. ......+. ....+.++
T Consensus 74 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~----------------~~~~~~~~-~~~~~~~~ 134 (343)
T 1ri6_A 74 LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLP----------------VGVVDVVE-GLDGCHSA 134 (343)
T ss_dssp EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEE----------------EEEEEEEC-CCTTBCCC
T ss_pred eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCcc----------------cccccccc-CCCCceEE
Confidence 11222233223 6789999999998888887 4556666653 1110 01123333 33468999
Q ss_pred EEecCCCcEEEEEe-CCCcEEEEeCCC-CceeE----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 383 SMCQWLTTRLASAS-LDGTVKIWDDRK-STPLA----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 383 afspdg~~~LaSgs-~Dg~IrIWDl~s-g~~l~----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+|+|+| ++|++++ .|+.|++||+.+ ++... .+..+.+..+.+++|+ |+|++|++++..++.|++||+..
T Consensus 135 ~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 135 NISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH----PNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEESSC
T ss_pred EECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC----CCCCEEEEEeCCCCEEEEEEecC
Confidence 999998 6666666 899999999987 65432 3333333478999999 99998877776899999999964
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCCCCCcceeeeeeee
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLL-ANAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~ 535 (1395)
.. .....+..+....... ........++|+++|.+|+ ++..++.|++|++.... .....+..+.
T Consensus 210 ~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~----~~~~~~~~~~ 274 (343)
T 1ri6_A 210 PH--------GNIECVQTLDMMPENF---SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG----SVLSKEGFQP 274 (343)
T ss_dssp TT--------SCCEEEEEEECSCTTC---CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS----CCEEEEEEEE
T ss_pred CC--------CcEEEEeeccccCccc---cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC----CceEEeeeec
Confidence 21 1112233333111100 0011223589999998776 55589999999997311 1122333332
Q ss_pred ccc--cEEEEecCCCCcC--cC-CCCeEEEEEc--CCCcee
Q 039790 536 VTM--PILSLTGTTTDAS--PD-GEHIVQIYCV--QTQAIQ 569 (1395)
Q Consensus 536 ~~~--~ils~~~~~~d~~--~s-~dg~V~lWdv--~t~~i~ 569 (1395)
... ..+.|+... ..+ .+ .++.|.+|++ .++.+.
T Consensus 275 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 275 TETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp CSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCccceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceee
Confidence 221 123343322 212 22 5688999954 466543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=185.02 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=164.9
Q ss_pred EEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
++.|+.|++||+.++....+..|...|.+++| ++++++|++++ ++.|++||+.+ ++. ..+...
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~-~~~i~~~d~~~~~~~--------------~~~~~~ 81 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNW-SPDGKYLLLNS-EGLLYRLSLAGDPSP--------------EKVDTG 81 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEE-CTTSSEEEEEE-TTEEEEEESSSCCSC--------------EECCCT
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEE-CCCCCEEEEEc-CCeEEEEeCCCCCCc--------------eEeccc
Confidence 46789999999999988788889999999999 99999999987 78999999998 662 122222
Q ss_pred -CCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 313 -GDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 313 -~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+...+.+++|+|++..+++++.. ..+..++... +. ...+..+ ..+.+++|+|+
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~-~~--------------------~~~~~~~-~~~~~~~~spd 139 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG-GT--------------------PRLMTKN-LPSYWHGWSPD 139 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC-CC--------------------CEECCSS-SSEEEEEECTT
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC-Cc--------------------eEEeecC-CCccceEECCC
Confidence 34667889999999988887732 3444443321 11 2233323 34899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSD 465 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~ 465 (1395)
+..++++++.|+.++||++.. +.....+..|.. .+.+++|+ |+|++|++++..|+.++||++. .+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~~~~~~i~~~~~~~-------- 206 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYS----PDGRWIYFNSSRTGQMQIWRVRVDG-------- 206 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTS--------
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceEC----CCCCEEEEEecCCCCccEEEECCCC--------
Confidence 943444888999999998642 334566667766 89999999 9999988877569999999986 33
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-----------CeEEEEEcCCCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-----------NAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-----------g~I~iWdl~~g~ 521 (1395)
..+..+..+... ...+.|+++|.+|++++.+ +.|++||+..++
T Consensus 207 ----~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 207 ----SSVERITDSAYG---------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp ----SCEEECCCCSEE---------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred ----CCcEEEecCCcc---------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 344455444322 2358999999999888765 569999987653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=184.77 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=169.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl 287 (1395)
+...+.+++|+|||+ |++++. ++.|++||+.++.. ..+..|...+..++| +++|++|++++ .+++|++|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~-spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV-DEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE-ETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE-CCCCCEEEEEeCCCCEEEEEEe
Confidence 345667899999999 555544 68999999987743 344557888999999 99999888888 7899999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecC---------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILAD---------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~---------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
..... ...+..... ....+..++|+|++. +++++. ++.+.+|+....+..
T Consensus 116 ~~~g~-----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~-------- 175 (347)
T 3hfq_A 116 AADGA-----------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL-------- 175 (347)
T ss_dssp CTTSC-----------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE--------
T ss_pred CCCCC-----------eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE--------
Confidence 64220 111121111 122466799999998 777666 455777766422211
Q ss_pred CccCccccccceEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEecCCCC-----CCeeEEE
Q 039790 358 LKCPVDELINGVQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLRPYDG-----HPVNCVT 427 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~~h~~-----~~V~sV~ 427 (1395)
.....+.. ....+..++|+|||..+++++..++.|++||+.. ++. +..+..... ..+..++
T Consensus 176 ---------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 176 ---------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ---------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ---------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 00111122 2346788999999933555567789999999874 542 333333221 2588999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |||++|++++..++.|.+||+... .....+..+..+...+ ..++|++||++|++++
T Consensus 247 ~s----pdG~~l~v~~~~~~~v~v~~~~~~---------g~~~~~~~~~~~~~~~---------~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 247 LS----HDGHFLYVSNRGYNTLAVFAVTAD---------GHLTLIQQISTEGDFP---------RDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EC----TTSCEEEEEEETTTEEEEEEECGG---------GCEEEEEEEECSSSCC---------CEEEECTTSSEEEEEE
T ss_pred EC----CCCCEEEEEeCCCCEEEEEEECCC---------CcEEEeEEEecCCCCc---------CeEEECCCCCEEEEEE
Confidence 99 999988766657999999999743 1225556665544322 2589999999887776
Q ss_pred C-CCeEEEEEcCC
Q 039790 508 K-KNAIYAIHMDY 519 (1395)
Q Consensus 508 ~-Dg~I~iWdl~~ 519 (1395)
. ++.|.+|+++.
T Consensus 305 ~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 305 QNTDNATLYARDL 317 (347)
T ss_dssp TTTTEEEEEEECT
T ss_pred cCCCcEEEEEEeC
Confidence 5 58999997653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=183.84 Aligned_cols=265 Identities=11% Similarity=0.026 Sum_probs=182.1
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee-CCCC-CEEEEEEecCCCEEEE-EEc
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI-SDPG-LVLGRQIAVNRNYICY-GLK 236 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~-~h~~-~V~~va~Spdg~~Las-Gs~ 236 (1395)
.|++++.++.|++||.. .|+. +..+. ++.. .+.+++|+++|+++++ +..
T Consensus 3 ~~v~~~~~~~v~~~d~~--~~~~--------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 54 (337)
T 1pby_B 3 YILAPARPDKLVVIDTE--KMAV--------------------------DKVITIADAGPTPMVPMVAPGGRIAYATVNK 54 (337)
T ss_dssp EEEEEETTTEEEEEETT--TTEE--------------------------EEEEECTTCTTCCCCEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCeEEEEECC--CCcE--------------------------EEEEEcCCCCCCccceEEcCCCCEEEEEeCC
Confidence 57888999999999943 1111 11222 1111 3677899999987654 456
Q ss_pred CCeEEEEECCCCce-EEec-cC----CCCeEEEEEeeCCCCEEEEEE------------CCCcEEEEECCCCCCCCCCcc
Q 039790 237 LGNIRILNIITALR-SLLR-GH----TQRVTDMAFFAEDVHLLASAS------------VDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 237 DG~IrIWd~~~~~~-~~l~-~H----~~~V~slaf~s~dg~~LaSgs------------~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.|++||+.++.. ..+. ++ ...+.+++| ++++++|++++ .++.|++||+.+++
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------- 126 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS------- 126 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEE-CCCCCEEEEEecccccccccccccCceEEEEECCCCc-------
Confidence 78999999998753 3333 22 236788999 89999988886 57999999998765
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
.+..+.. ...+..++|+|++..++++ ++.+.+|+...... ...+..+. .
T Consensus 127 -------~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--------------------~~~~~~~~-~ 175 (337)
T 1pby_B 127 -------RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--------------------VEDKPIQS-W 175 (337)
T ss_dssp -------EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--------------------EEEECSTT-T
T ss_pred -------EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--------------------eeeeeccc-c
Confidence 1222222 3446788999999887777 67788887643211 12222221 0
Q ss_pred eEEEEEecCCCcEEEEEeCCC-----------------------cEEEEeCCCCcee-EEecCCCCCCeeEEEEeecCCC
Q 039790 379 ITELSMCQWLTTRLASASLDG-----------------------TVKIWDDRKSTPL-AVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg-----------------------~IrIWDl~sg~~l-~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
...+.|+|++..+++++..++ .|.+||+.+++.. ..+..+.. .+.+++|+ |
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s----~ 250 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVN----P 250 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEEC----T
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC-ceeeEEEC----C
Confidence 012367888743333333333 4789999998764 23445554 78899999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
||++|+++ ++.|++||+.++ +.+..+...... ..++|+++|.+|++++.++.|++
T Consensus 251 dg~~l~~~---~~~v~~~d~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 251 AKTRAFGA---YNVLESFDLEKN------------ASIKRVPLPHSY----------YSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp TSSEEEEE---ESEEEEEETTTT------------EEEEEEECSSCC----------CEEEECTTSCEEEEESBSSEEEE
T ss_pred CCCEEEEe---CCeEEEEECCCC------------cCcceecCCCce----------eeEEECCCCCEEEEEcCCCcEEE
Confidence 99999885 699999999887 777777644321 25899999999999999999999
Q ss_pred EEcCCCC
Q 039790 515 IHMDYGP 521 (1395)
Q Consensus 515 Wdl~~g~ 521 (1395)
||+.+++
T Consensus 306 ~d~~~~~ 312 (337)
T 1pby_B 306 YDAETLE 312 (337)
T ss_dssp EETTTCC
T ss_pred EECcCCc
Confidence 9998764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=204.77 Aligned_cols=330 Identities=8% Similarity=0.036 Sum_probs=200.5
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCce--EEeccCC-----------------CCeEEEEEeeCCCCEEEEEECC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALR--SLLRGHT-----------------QRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l~~H~-----------------~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+..+.|. |+.+++++.|| | +||+.++.. ..+..|. ..|.+++| ++| .+++.+. |
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-AGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-TTT-TEEEEEE-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-CCC-CeEEEEE-C
Confidence 3346677 66778888888 8 999999876 6665554 46999999 888 5555553 5
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC----CccccccCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV----GKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~----~~~~~~s~~ 355 (1395)
++|++||+.+++ ...+ ..+...+..++|+|++..++. +.++.+.+|+.... +........
T Consensus 101 ~~i~~~d~~~~~--------------~~~l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 101 GGLVGFDMLARK--------------VTYL-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp TEEEEEETTTTE--------------EEEE-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred CEEEEEECCCCc--------------eEEc-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccC
Confidence 999999998765 2222 234556778999999987776 57788888876541 211100000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---------------------------------CCCcEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---------------------------------LDGTVK 402 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---------------------------------~Dg~Ir 402 (1395)
+.. ....+......+...+.+++|+||| ++|++++ .++.|+
T Consensus 165 ~~~-----~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 165 GTE-----TLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp CBT-----TEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred CCC-----CeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 000 0000000011122336899999999 7888887 446799
Q ss_pred EEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCC-----eEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 403 IWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNR-----ELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 403 IWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg-----~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
+||+.+++...... .|.. .+.+++|+ |||++|++++ .|+ .|++||+.++ +....+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~-~~~~~~~s----pdg~~l~~~~-~~~~~~~~~v~~~d~~~g------------~~~~~~ 300 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEK-FLTNLSWS----PDENILYVAE-VNRAQNECKVNAYDAETG------------RFVRTL 300 (706)
T ss_dssp EEETTTTEEEECCCCSCTTC-EEEEEEEC----TTSSEEEEEE-ECTTSCEEEEEEEETTTC------------CEEEEE
T ss_pred EEECCCCceEeeccCCCCce-eEeeEEEE----CCCCEEEEEE-eCCCCCeeEEEEEECCCC------------ceeeEE
Confidence 99999987655443 4554 79999999 9999998866 565 9999999876 444444
Q ss_pred eccCcccccccccccceEEEEeC--CCCEEEEEeCCCeEEEEEcCC-CCCCCCcceeeeeeeeccc-cEEEEecCCCCcC
Q 039790 476 ELKSSAELRLEDAFFNQVVALNR--AGLFLLANAKKNAIYAIHMDY-GPNPASTRMDYIAEFTVTM-PILSLTGTTTDAS 551 (1395)
Q Consensus 476 ~~h~~~i~~~~~~~~~~~l~~S~--dg~~LaSgs~Dg~I~iWdl~~-g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~~ 551 (1395)
........ ......+.|++ ||.+|+++..|+.++||.++. +. .+..+....... ..+.|+... ..+
T Consensus 301 ~~~~~~~~----~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg-~~l 370 (706)
T 2z3z_A 301 FVETDKHY----VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKG-TRL 370 (706)
T ss_dssp EEEECSSC----CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTS-SEE
T ss_pred EEccCCCe----ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCC-CEE
Confidence 32211100 00112478999 999999999999999998863 21 222222211111 112333222 111
Q ss_pred ---cCCC----CeEEEEEcCCCceeeec-ccceEEecCCCCC--eecccCC---CceEEEeecCCCC
Q 039790 552 ---PDGE----HIVQIYCVQTQAIQQYA-LDLSQCLPPPLEN--AELEKTD---SNATRAFDVANPD 605 (1395)
Q Consensus 552 ---~s~d----g~V~lWdv~t~~i~~~~-~~~~~cl~~s~d~--l~~~~sd---~~v~~iWD~~tg~ 605 (1395)
...+ ..|+.|++.++.+.... .....++.+++|+ +++..++ ...+.+||+.+++
T Consensus 371 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 371 YFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 1222 37888888887654432 2234566677765 4444322 2567899998887
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=179.08 Aligned_cols=230 Identities=10% Similarity=0.109 Sum_probs=170.2
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCc-eEEeccCCCC---------eEEEEEeeCCCCEEEEEE--CCCcEE
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITAL-RSLLRGHTQR---------VTDMAFFAEDVHLLASAS--VDGRFF 283 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~-~~~l~~H~~~---------V~slaf~s~dg~~LaSgs--~DgtV~ 283 (1395)
..+.+++|+++|++++++ ..++.|.+||..++. +..+..+... +.+++| ++++++++.++ .++.|+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA-DDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE-ETTTTEEEEEEESSSCEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE-CCCCCEEEEEecCCCceEE
Confidence 346678999999966655 557999999999885 3455444322 788999 89998777766 478999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||+.+++ .+..+..+...+..++|++++..++++..++.+.+|+......
T Consensus 168 ~~d~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--------------- 218 (353)
T 3vgz_A 168 VVDGGNIK--------------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--------------- 218 (353)
T ss_dssp EEETTTTE--------------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE---------------
T ss_pred EEcCCCCc--------------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE---------------
Confidence 99999876 2333333445577899999999999888888888887643211
Q ss_pred ccccceEEEc----ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVG----KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~----~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+. ++...+.+++|+|+|..++++...++.|.+||..+++.+..+.... ...++|+ |+|+++
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s----~dg~~l 286 (353)
T 3vgz_A 219 -----LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFN----PARNEA 286 (353)
T ss_dssp -----EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEE----TTTTEE
T ss_pred -----EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEEC----CCCCEE
Confidence 11221 3566788999999994344455556999999999999988887543 3679999 999987
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++++..++.|.+||+.++ +.+..+...... ..++|++||++|+.+..++
T Consensus 287 ~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSY------------KVVKTFDTPTHP----------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTT------------EEEEEEECCSEE----------EEEEECTTSCEEEEEEECC
T ss_pred EEEECCCCeEEEEECCCC------------eEEEEEecCCCC----------CeEEEcCCCCEEEEEEccc
Confidence 777767999999999888 777777654321 3589999999766665543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=210.72 Aligned_cols=241 Identities=12% Similarity=-0.019 Sum_probs=184.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC--CCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII--TALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~--~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
...+.+|...+.++.|+++ .++++++.||.++||++. ++....+..|. .+..++| +++|++|+++. ++.|++||
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~-SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHL-NTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEE-EESSSCEEEEE-TTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeE-cCCCCEEEEEe-CCEEEEec
Confidence 3455789999999999988 667777888999999865 44566677666 4677899 89999988874 89999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecC-----------CCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILAD-----------GDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~-----------~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+.... +..+.. +...+..++|+ |++..+++++ .+.+..|+... +.
T Consensus 272 ~~~~~---------------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~-~~------ 328 (1045)
T 1k32_A 272 PDTEK---------------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG-TY------ 328 (1045)
T ss_dssp TTTCC---------------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-SB------
T ss_pred CCceE---------------eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC-Cc------
Confidence 94332 111111 23468899999 9998777666 66666665432 11
Q ss_pred CCCCccCccccccceEEEcccCC-CeEEEEEecCCCcEEEEEeCCCcEE-EEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDG-EITELSMCQWLTTRLASASLDGTVK-IWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~-~V~slafspdg~~~LaSgs~Dg~Ir-IWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..|.. .+.+++|+ || ..|++++.++.|. +||+..+... .+.+|.. .+.+++|+
T Consensus 329 --------------~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~-~~~~~~~S--- 387 (1045)
T 1k32_A 329 --------------VLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAE-KFEENLG-NVFAMGVD--- 387 (1045)
T ss_dssp --------------EEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEE-ECCCCCC-SEEEEEEC---
T ss_pred --------------eEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCce-EecCCcc-ceeeeEEC---
Confidence 233456777 89999999 88 7888988888898 9999877654 4447766 89999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC--
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN-- 510 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg-- 510 (1395)
|||++|++++ .++.|++||+.++ ++...+..|...+. .++|+|||++|++++.++
T Consensus 388 -pDG~~la~~~-~~~~v~~~d~~tg------------~~~~~~~~~~~~v~---------~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 388 -RNGKFAVVAN-DRFEIMTVDLETG------------KPTVIERSREAMIT---------DFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp -TTSSEEEEEE-TTSEEEEEETTTC------------CEEEEEECSSSCCC---------CEEECTTSCEEEEEEEECSS
T ss_pred -CCCCEEEEEC-CCCeEEEEECCCC------------ceEEeccCCCCCcc---------ceEECCCCCeEEEEecCccc
Confidence 9999999876 8999999999988 77777666655433 389999999998887654
Q ss_pred --------eEEEEEcCCC
Q 039790 511 --------AIYAIHMDYG 520 (1395)
Q Consensus 511 --------~I~iWdl~~g 520 (1395)
.|++||+..+
T Consensus 445 ~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TTCSCCEEEEEEEETTTT
T ss_pred cccCCCCCeEEEEECCCC
Confidence 8999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=193.50 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=153.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----------ceE-----EeccCCCCeEEEEEeeCCCCEEE----EE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----------LRS-----LLRGHTQRVTDMAFFAEDVHLLA----SA 276 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----------~~~-----~l~~H~~~V~slaf~s~dg~~La----Sg 276 (1395)
..+..++|++++.+|++|+.|| |+||+...- ... ....|.+.|++++| ++++++|+ +|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-SCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-CTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-cCCCCEEEEEEecc
Confidence 4578899999999999999988 899875321 111 11236678999999 89999999 88
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.|++|+|||+.++..... .....+..+....+|...+.+++|+|++ ..+++++.++.+.+||.... ..
T Consensus 115 s~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~------ 184 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAK---QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VK------ 184 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTC---SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EE------
T ss_pred CCCceEEEEEccccccCCc---CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cc------
Confidence 8999999999976410000 0011233456666788899999999984 44555556666777766432 10
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEe
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFL 429 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs 429 (1395)
.....+|...|++++|+|+| ++|++|+.||+|++||++ +.....+..|.. ..|.+++|+
T Consensus 185 -------------~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 185 -------------VCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp -------------EEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred -------------eeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 33445688999999999998 899999999999999998 776777655421 178999999
Q ss_pred ecCCCCCcEEEEEecCCCe------EEEEECCCC
Q 039790 430 IGPHPQHIVLITGGPLNRE------LKIWASAEE 457 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~------I~IWDl~tg 457 (1395)
+++.++++.+..||. +++||+++.
T Consensus 250 ----~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 ----GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 888888776655643 899999865
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-14 Score=169.76 Aligned_cols=264 Identities=10% Similarity=0.025 Sum_probs=168.2
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC----CeEEEEECCC--CceE---EeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL----GNIRILNIIT--ALRS---LLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFI 284 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D----G~IrIWd~~~--~~~~---~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~I 284 (1395)
+...+..++|+|||++|++++.+ |.|++|++.. +.+. .+..+......++| ++++|++++ .+++|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 45667778999999999999886 8999999876 4332 33345566777877 778777776 5889999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
|++......... ...+...+. ....+.+++|+|++.++++++. ++.+.+|+........ ...
T Consensus 125 ~~~~~~g~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~---~~~ 194 (361)
T 3scy_A 125 FPIGQDGALLPA-------SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD---NKE 194 (361)
T ss_dssp EEBCTTSCBCSC-------SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT---TCC
T ss_pred EEeCCCCcCccc-------ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc---ccc
Confidence 999764421111 111111111 1122467999999998888876 4556666543221000 000
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce--eEEec---CCCCCCeeEEEEee
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRKSTP--LAVLR---PYDGHPVNCVTFLI 430 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~sg~~--l~tl~---~h~~~~V~sV~fs~ 430 (1395)
.+. ...........+...+..++|+||| ++|++++ .++.|++||+.++.. +..+. .+.. .+..++|+
T Consensus 195 ~l~----~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~s- 267 (361)
T 3scy_A 195 KFL----TKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ-GSGDIHLS- 267 (361)
T ss_dssp CCE----EEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC-CEEEEEEC-
T ss_pred cee----ecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC-CcccEEEC-
Confidence 000 0000011222345678899999999 6666555 689999999987754 33333 2223 57899999
Q ss_pred cCCCCCcEEEEEecC-CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-C
Q 039790 431 GPHPQHIVLITGGPL-NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-K 508 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~-Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~ 508 (1395)
|||++|++++.. ++.|.||++.... .....+..+.. ... ...++|++||++|++++ .
T Consensus 268 ---pdg~~l~v~~~~~~~~i~v~~~~~~~--------g~~~~~~~~~~-g~~---------~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 268 ---PDGKYLYASNRLKADGVAIFKVDETN--------GTLTKVGYQLT-GIH---------PRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp ---TTSSEEEEEECSSSCEEEEEEECTTT--------CCEEEEEEEEC-SSC---------CCEEEECTTSCEEEEEETT
T ss_pred ---CCCCEEEEECCCCCCEEEEEEEcCCC--------CcEEEeeEecC-CCC---------CceEEECCCCCEEEEEECC
Confidence 999999887755 6899999996220 11234444443 211 12589999999887776 6
Q ss_pred CCeEEEEEcCC
Q 039790 509 KNAIYAIHMDY 519 (1395)
Q Consensus 509 Dg~I~iWdl~~ 519 (1395)
++.|.+|+++.
T Consensus 327 ~~~v~v~~~d~ 337 (361)
T 3scy_A 327 TNVIQIFERDQ 337 (361)
T ss_dssp TTEEEEEEECT
T ss_pred CCCEEEEEEEC
Confidence 79999987763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=177.15 Aligned_cols=236 Identities=10% Similarity=0.008 Sum_probs=168.5
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCC-CCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCc
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHT-QRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~-~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
++++++++.++++++.++.|++||..++. +..+..+. ..+..++| +++++++ +++..++.|++||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~~~~i~~~d~~t~~------ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDNRTAYVLNNHYGDIYGIDLDTCK------ 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEE-CTTSSEEEEEETTTTEEEEEETTTTE------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEE-CCCCCEEEEEeCCCCcEEEEeCCCCc------
Confidence 45678889999999999999999999885 33444332 26889999 8998865 555678999999998876
Q ss_pred ccccceEEEEEEecCC----CCCccEEEEeCCCCeEEEEEeC------------CeEEEEEcCCCCccccccCCCCCccC
Q 039790 298 QILGKIVVAIQILADG----DSVHPRVCWHPHKQEILMLAIG------------NRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~~------------~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+..+.. ... ...+..++|+|++..+++++.+ +.+.+|+......
T Consensus 77 -----~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------- 137 (349)
T 1jmx_B 77 -----NTFHANL-SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------------- 137 (349)
T ss_dssp -----EEEEEES-CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------------
T ss_pred -----EEEEEEc-ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-------------
Confidence 1111111 111 2236789999999988888765 7777777643110
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC----------------------
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD---------------------- 419 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---------------------- 419 (1395)
...+..+. +...+.+++|+|+| ++ +.++ +.|++||+.+++.+..+..+.
T Consensus 138 ----~~~~~~~~-~~~~~~~~~~s~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 138 ----AKPVRTFP-MPRQVYLMRAADDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp ----BCCSEEEE-CCSSCCCEEECTTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred ----cceeeecc-CCCcccceeECCCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 01123333 34468899999999 54 4443 449999999998887775432
Q ss_pred ---------------------------------------------CCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEE
Q 039790 420 ---------------------------------------------GHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 420 ---------------------------------------------~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWD 453 (1395)
+..+.+++|+ | ||++|+++ ++.|++||
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----p~dg~~l~~~---~~~v~~~d 281 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS----PKDPNQIYGV---LNRLAKYD 281 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC----SSCTTEEEEE---ESEEEEEE
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec----CCCCCEEEEE---cCeEEEEE
Confidence 0034566777 8 99998875 78999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++ +.+..+...... ..++|+++|.+|++++.++.|++||+.++
T Consensus 282 ~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 282 LKQR------------KLIKAANLDHTY----------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp TTTT------------EEEEEEECSSCC----------CEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CccC------------eEEEEEcCCCCc----------cceEECCCCCEEEEecCCCeEEEEecccc
Confidence 9888 777777643321 25899999998888888999999999774
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=197.92 Aligned_cols=240 Identities=10% Similarity=-0.004 Sum_probs=173.1
Q ss_pred CCCEEEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCC-
Q 039790 216 PGLVLGRQIAVNRNYICYGLK-LGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVHLLASASV---DGRFFIWNITE- 289 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~-DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~t- 289 (1395)
...|++++|++||++||+++. ||+++||++.++....+..|. ..|..++| ++| +++++++. +...+||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~-spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHY-GVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECT-TCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccC-CCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999987 999999999888777777776 68999999 788 77887775 45566665543
Q ss_pred -CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 290 -GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 290 -g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
... ...+ .. ...+...+|+++++. +++++..+.+.+|+... +.
T Consensus 99 ~~g~-------------~~~l-~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~------------------- 143 (582)
T 3o4h_A 99 RPGE-------------EQRL-EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GG------------------- 143 (582)
T ss_dssp STTC-------------CEEC-TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TE-------------------
T ss_pred CCCc-------------cccc-cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-Cc-------------------
Confidence 210 0111 11 112336789999875 45566677777665422 21
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLD----GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+..+.. .+++|+||| ++|++++.| +.|++||+.+++.. .+..|.+ .+.+++|+ |||++|+++.
T Consensus 144 -~~~l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~S----pDG~~l~~~~ 213 (582)
T 3o4h_A 144 -LRELARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASIS----PGMKVTAGLE 213 (582)
T ss_dssp -EEEEEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEEC----TTSCEEEEEE
T ss_pred -EEEeecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceEC----CCCCEEEEcc
Confidence 222222333 889999999 899988877 78999999988754 6778877 89999999 9999999654
Q ss_pred cCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.++ .|++||+.++ ++. .+..+...+.... .......+|++||.++++++.|+.+++|++
T Consensus 214 -~~~~~~i~~~d~~~~------------~~~-~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 214 -TAREARLVTVDPRDG------------SVE-DLELPSKDFSSYR-PTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -CSSCEEEEEECTTTC------------CEE-ECCCSCSHHHHHC-CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -CCCeeEEEEEcCCCC------------cEE-EccCCCcChhhhh-hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 788 8999999887 655 5555544332210 001112349999999999999999999999
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=170.83 Aligned_cols=287 Identities=13% Similarity=0.086 Sum_probs=176.9
Q ss_pred EEEEEEc----CCeEEEEECCC--CceE--EeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcc
Q 039790 230 YICYGLK----LGNIRILNIIT--ALRS--LLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 230 ~LasGs~----DG~IrIWd~~~--~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~ 298 (1395)
+|++|+. ++.|.+|+++. +... ....+...+..++| +++|+ |++++. ++.|++||+.++.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~-spdg~-l~~~~~~~~~~~v~~~~~~~g~------- 74 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLAL-SAKDC-LYSVDKEDDEGGIAAWQIDGQT------- 74 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEE-CTTCE-EEEEEEETTEEEEEEEEEETTE-------
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEE-ccCCe-EEEEEecCCCceEEEEEecCCc-------
Confidence 4455533 45677777654 5432 33456677889999 88998 555544 6899999997654
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc----
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG---- 373 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~---- 373 (1395)
...+.....+...+..++|+|++..+++++. ++.+.+|+....+... .+..+.
T Consensus 75 -----~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~-----------------~~~~~~~~~~ 132 (347)
T 3hfq_A 75 -----AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT-----------------LTDTVQHSGH 132 (347)
T ss_dssp -----EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE-----------------EEEEEECCCC
T ss_pred -----EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee-----------------ecceeecCCC
Confidence 1122222234556778999999998888884 5667777664322210 011111
Q ss_pred -----ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCcee--EEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 374 -----KHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPL--AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 374 -----~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l--~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+...+.+++|+|+| ++++++..++.|++||+. ++... ..+..+.+..+..++|+ |||++|++++..
T Consensus 133 ~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s----pdg~~l~v~~~~ 207 (347)
T 3hfq_A 133 GPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS----PDGQYAFLAGEL 207 (347)
T ss_dssp CSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEETT
T ss_pred CCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC----CCCCEEEEEeCC
Confidence 123458999999999 577777788999999998 55432 23333333368899999 999988887778
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
++.|++|++.... .....+..+....... ........++|++||++| +++..++.|++|++..+.
T Consensus 208 ~~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--- 273 (347)
T 3hfq_A 208 SSQIASLKYDTQT--------GAFTQLGIVKTIPADY---TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--- 273 (347)
T ss_dssp TTEEEEEEEETTT--------TEEEEEEEEESSCTTC---CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG---
T ss_pred CCEEEEEEecCCC--------CceEEeeeeeecCCCC---CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC---
Confidence 9999999987520 1112333333322110 001123468999999977 566678999999996321
Q ss_pred Ccceeeeeeeecc---ccEEEEecCCCCcC--c-CCCCeEEEE--EcCCCcee
Q 039790 525 STRMDYIAEFTVT---MPILSLTGTTTDAS--P-DGEHIVQIY--CVQTQAIQ 569 (1395)
Q Consensus 525 ~~~~~~i~~f~~~---~~ils~~~~~~d~~--~-s~dg~V~lW--dv~t~~i~ 569 (1395)
.+..+..+... ...+.|+... ..+ . .+++.|.+| +..++++.
T Consensus 274 --~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 --HLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp --CEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred --cEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 22333333321 1223443332 212 2 345789999 55566654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=175.27 Aligned_cols=228 Identities=10% Similarity=0.051 Sum_probs=156.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceE-Eec-cCCC-CeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 229 NYICYGLKLGNIRILNIITALRS-LLR-GHTQ-RVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~-~l~-~H~~-~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++|++++.++.|++||..++... .+. ++.. .+.+++| +++++++ ++++.++.|++||+.+++ .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~-----------~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV-APGGRIAYATVNKSESLVKIDLVTGE-----------TL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEE-CTTSSEEEEEETTTTEEEEEETTTCC-----------EE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEE-cCCCCEEEEEeCCCCeEEEEECCCCC-----------eE
Confidence 47899999999999999988543 333 2222 5889999 8998765 566668899999999876 11
Q ss_pred EEEEEecC--CCCCccEEEEeCCCCeEEEEE------------eCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 305 VAIQILAD--GDSVHPRVCWHPHKQEILMLA------------IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 305 ~~l~~~~~--~~~~v~~v~~sp~~~~lla~g------------~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..+..... +...+..++|++++..++++. .++.+.+|+... ++. ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~-------------------~~ 129 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSR-------------------RK 129 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEE-------------------EE
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcE-------------------EE
Confidence 12211110 112466899999998888775 357777777632 110 22
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC---
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--- 447 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--- 447 (1395)
.+. ....+.+++|+|+| ++|+++ ++.|++||+.+++.+..+..+.. ...+.|+ |+|.+|+.++..++
T Consensus 130 ~~~-~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s----~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 130 AFE-APRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQ----PDVLAVWNQHESSGVMA 199 (337)
T ss_dssp EEE-CCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCC----CBCCCCCCCCTTTTEEE
T ss_pred EEe-CCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeC----CCccEEeeeccCCCcee
Confidence 332 24567889999998 666666 68999999999998888875541 2234787 88887766553444
Q ss_pred --------------------eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 448 --------------------ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 448 --------------------~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
.|.+||+.++ ++. .+...... .....++|++||.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------------~~~-~~~~~~~~-------~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETG------------EMA-MREVRIMD-------VFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTC------------CEE-EEEEEECS-------SCEEEEEECTTSSEEEEE-
T ss_pred eeeeccccccccccccccccceEEEeCCCC------------Cce-EeecCCCC-------CceeeEEECCCCCEEEEe-
Confidence 4689999887 543 22221110 112258999999999888
Q ss_pred CCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYG 520 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g 520 (1395)
++.|++||+.++
T Consensus 259 -~~~v~~~d~~~~ 270 (337)
T 1pby_B 259 -YNVLESFDLEKN 270 (337)
T ss_dssp -ESEEEEEETTTT
T ss_pred -CCeEEEEECCCC
Confidence 799999998764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-16 Score=198.68 Aligned_cols=301 Identities=8% Similarity=0.009 Sum_probs=177.9
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC---CCEEEEEEecC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP---GLVLGRQIAVN 227 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~---~~V~~va~Spd 227 (1395)
.+.+.+++. ++..+.|+.|++|+... |+ ....+.+|. ..|.+++||||
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~--g~--------------------------~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIET--GQ--------------------------SYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSS--CC--------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCC--Cc--------------------------EEEEEccccccccceeeEEECCC
Confidence 456677774 44445689999999542 11 111111121 13778999999
Q ss_pred CCEEEEEEc---------CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLK---------LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~---------DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|++|++++. ++.|++||+.++.. ..+ ...+.+++| +|||++|+.+. |+.|++||+.++.....
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~-SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCW-SPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEE-CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceE-CCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 999999876 78999999999866 444 356899999 99999999986 78999999998763111
Q ss_pred CcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCcc-------ccccC----
Q 039790 296 KPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKG-------ERFSA---- 354 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~-------~~~s~---- 354 (1395)
........ ++.++. .....++|+|+|..|+.++.++ .+..|........ ..|..
T Consensus 146 ~~~~~~~~-----v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 146 TFNGRENK-----IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CCCCBTTT-----EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred ecCCCcCC-----eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 00000000 001111 1124799999999888877653 1111100000000 00000
Q ss_pred CCCCccCccccccce----------EEEcccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEe----CCCCceeEEe-
Q 039790 355 EEPLKCPVDELINGV----------QLVGKHDGEITELSMCQWLTTRLASASLD----GTVKIWD----DRKSTPLAVL- 415 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~----------~~l~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWD----l~sg~~l~tl- 415 (1395)
.....+.+|+...+. ..+.+|...+.+++|+||+ +++++.... ..|.+|| +.++++...+
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 000011112221111 1123588889999999997 777775433 2488999 8888766555
Q ss_pred ---cCCCCCCee-----EEEEeecCCCCCcEEEE-EecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 416 ---RPYDGHPVN-----CVTFLIGPHPQHIVLIT-GGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 416 ---~~h~~~~V~-----sV~fs~~~~pdg~~L~s-~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
.+|.+ ++. .+.|+ |||+.|+. .+..++ .|.+||+.++ + ...+..+...+
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~~s----pdg~~l~~~~~~~~g~~~l~~~~~~~~------------~-~~~lt~~~~~v-- 359 (719)
T 1z68_A 300 HIEESRTG-WAGGFFVSTPVFS----YDAISYYKIFSDKDGYKHIHYIKDTVE------------N-AIQITSGKWEA-- 359 (719)
T ss_dssp EEEECSSS-CSSSSSCCCCEEC----TTSSCEEEEEECTTSCEEEEEESSCST------------T-CEECSCSSSCE--
T ss_pred cccccCCc-eEccccCCccEEC----CCCCeEEEEEEccCCceEEEEEECCCC------------c-eEecccCceEE--
Confidence 46766 777 89999 99996654 233555 5667777655 3 23333222111
Q ss_pred ccccccceEEEEeCCCCEEEEEeCC-----CeEEEEEcCC
Q 039790 485 LEDAFFNQVVALNRAGLFLLANAKK-----NAIYAIHMDY 519 (1395)
Q Consensus 485 ~~~~~~~~~l~~S~dg~~LaSgs~D-----g~I~iWdl~~ 519 (1395)
..+.++ +|..|+..+.+ +.+++|.+..
T Consensus 360 -------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 360 -------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 123444 77766666654 7888888865
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=200.77 Aligned_cols=333 Identities=13% Similarity=0.066 Sum_probs=194.3
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-ccCCC---CeEEEEEeeCCCCEEEEEEC---------CCcEEEEEC
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITALRSLL-RGHTQ---RVTDMAFFAEDVHLLASASV---------DGRFFIWNI 287 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-~~H~~---~V~slaf~s~dg~~LaSgs~---------DgtV~IWdl 287 (1395)
++.|++||+++++ +.||.|++||+.++....+ .+|.. .|.+++| ++||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGL-SPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEE-CTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEE-CCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6789999965555 4699999999999865444 44433 4999999 999999999887 789999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.+++..... . ....+..++|+|+|..|+.+ .++.+.+|+... +....+...+ .
T Consensus 98 ~~g~~~~~~-----------~----l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~-g~~~~l~~~~----------~ 150 (719)
T 1z68_A 98 SNGEFVRGN-----------E----LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPG-DPPFQITFNG----------R 150 (719)
T ss_dssp TTTEECCSS-----------C----CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTT-SCCEECCCCC----------B
T ss_pred CCCccccce-----------e----cCcccccceECCCCCEEEEE-ECCeEEEEeCCC-CCcEEEecCC----------C
Confidence 987621000 0 01346789999999877666 567777776533 2211110000 0
Q ss_pred ceEEEcccCCCe---------EEEEEecCCCcEEEEEeCCC----------------------------------cEEEE
Q 039790 368 GVQLVGKHDGEI---------TELSMCQWLTTRLASASLDG----------------------------------TVKIW 404 (1395)
Q Consensus 368 ~~~~l~~h~~~V---------~slafspdg~~~LaSgs~Dg----------------------------------~IrIW 404 (1395)
...++.||...| .+++||||| ++|++++.|. .|++|
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 011223343333 589999999 8898887652 78999
Q ss_pred eCCCCcee---E-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecC-C--CeEEEEE----CCCCCCCCCCCCcccc
Q 039790 405 DDRKSTPL---A-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL-N--RELKIWA----SAEEEGWLLPSDIESW 469 (1395)
Q Consensus 405 Dl~sg~~l---~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~-D--g~I~IWD----l~tg~~~~~~~~~~~~ 469 (1395)
|+.+++.+ . .+.+|.. .+.+++|+ ||++++++.... + ..|.+|| +.++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S----pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------------ 292 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWV----TDERVCLQWLKRVQNVSVLSICDFREDWQTW------------ 292 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCE-EEEEEEES----SSSEEEEEEEESSTTEEEEEEEEECSSSSSE------------
T ss_pred ECCCCCccceeEccCCccCCCCcc-eEEEeEEe----CCCeEEEEEeccccCeEEEEEEcccCCCCCC------------
Confidence 99988753 1 2345776 89999999 998777664311 2 2488899 7665
Q ss_pred cEEEEE----eccCcccccccccccceEEEEeCCCCEEEE--EeCCC--eEEEEEcCCCCCCCCcceeeeee--eecccc
Q 039790 470 KCTQTL----ELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKN--AIYAIHMDYGPNPASTRMDYIAE--FTVTMP 539 (1395)
Q Consensus 470 ~~l~tl----~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg--~I~iWdl~~g~~~~~~~~~~i~~--f~~~~~ 539 (1395)
++...+ ..+...+.. .....+.|++||..|+. +..++ .|++|++..+.. ..+.. +.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~------~~lt~~~~~v~~~ 362 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGG----FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA------IQITSGKWEAINI 362 (719)
T ss_dssp ECCGGGEEEEECSSSCSSS----SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC------EECSCSSSCEEEE
T ss_pred ceEEEEecccccCCceEcc----ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce------EecccCceEEEEE
Confidence 333322 233322210 00014789999995543 44555 466666655431 11211 111111
Q ss_pred EEEEecCCCCcCc----CCCCeEEEEEcCC--Cc--eeeecc------cceEEecCCCCC--eecccCC--CceEEEeec
Q 039790 540 ILSLTGTTTDASP----DGEHIVQIYCVQT--QA--IQQYAL------DLSQCLPPPLEN--AELEKTD--SNATRAFDV 601 (1395)
Q Consensus 540 ils~~~~~~d~~~----s~dg~V~lWdv~t--~~--i~~~~~------~~~~cl~~s~d~--l~~~~sd--~~v~~iWD~ 601 (1395)
..+ ++..+-... .+++.++||.+.. +. ...... .......+++++ ++...+. .-.+.+||+
T Consensus 363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 111 221100001 1246788887764 42 222211 112233344443 4433222 135678999
Q ss_pred CCCCcceeec
Q 039790 602 ANPDGSASLE 611 (1395)
Q Consensus 602 ~tg~~~~~l~ 611 (1395)
.+|++...++
T Consensus 442 ~~g~~~~~~~ 451 (719)
T 1z68_A 442 RTDQEIKILE 451 (719)
T ss_dssp SSCCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9998776665
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-15 Score=181.52 Aligned_cols=200 Identities=13% Similarity=0.140 Sum_probs=144.6
Q ss_pred CCCCCEEEEEEecCCCEEE----EEEcCCeEEEEECCCC------------ceEEeccCCCCeEEEEEeeCC-CCEEEEE
Q 039790 214 SDPGLVLGRQIAVNRNYIC----YGLKLGNIRILNIITA------------LRSLLRGHTQRVTDMAFFAED-VHLLASA 276 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~La----sGs~DG~IrIWd~~~~------------~~~~l~~H~~~V~slaf~s~d-g~~LaSg 276 (1395)
.+...|.+++|+++|++|+ +|+.|+.|+|||+.++ ....+.+|...|.+|+| +++ +.+|++|
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW-NPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE-CSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE-CCCCCCEEEEE
Confidence 3567899999999999999 7888999999998654 14567789999999999 665 8999999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
+.||+|+|||++++. .+.....|...+.+++|+|++..+++++.++.+.+|+.. +..
T Consensus 169 s~Dg~v~iwD~~~~~--------------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~------- 225 (434)
T 2oit_A 169 LADGSIAVLQVTETV--------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQE------- 225 (434)
T ss_dssp ETTSCEEEEEESSSE--------------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCE-------
T ss_pred ECCCeEEEEEcCCCc--------------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--Ccc-------
Confidence 999999999999764 222334467789999999999888888888888888764 111
Q ss_pred CCccCccccccceEEEc-------ccCCCeEEEEEecCCCcEEEE-EeCCCc------EEEEeCCCCc-----eeEEec-
Q 039790 357 PLKCPVDELINGVQLVG-------KHDGEITELSMCQWLTTRLAS-ASLDGT------VKIWDDRKST-----PLAVLR- 416 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~-------~h~~~V~slafspdg~~~LaS-gs~Dg~------IrIWDl~sg~-----~l~tl~- 416 (1395)
...+. .|...|.+++|++++ .++++ ++.||. +++||++... ....+.
T Consensus 226 ------------~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~ 292 (434)
T 2oit_A 226 ------------KKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFME 292 (434)
T ss_dssp ------------EEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCC
T ss_pred ------------cccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEeccc
Confidence 11111 244589999999987 55543 445543 8999998652 112221
Q ss_pred ------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 417 ------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 417 ------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+... +-..+.+. ++.++++++++..+.|.|+...
T Consensus 293 ~~~~~~~~r~-~~~~~~~l----~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 293 PCYGSCTERQ-HHYYLSYI----EEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCCCSSSC-CCEEEEEE----GGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCCCCCcC-cceeeehh----ccCCEEEEecCCCCceeEEEec
Confidence 1122 23344444 6778888877777778888754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=188.82 Aligned_cols=230 Identities=11% Similarity=0.104 Sum_probs=157.5
Q ss_pred eeeCCC-CCEEEEEEecCCCEEEEEEc---CCeEEEEECCC---CceEEeccCCCCeEEEEEeeCCCC--EEEEEECCCc
Q 039790 211 KYISDP-GLVLGRQIAVNRNYICYGLK---LGNIRILNIIT---ALRSLLRGHTQRVTDMAFFAEDVH--LLASASVDGR 281 (1395)
Q Consensus 211 ~l~~h~-~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~---~~~~~l~~H~~~V~slaf~s~dg~--~LaSgs~Dgt 281 (1395)
.+..|. ..+.++.|+|| +++++++. +...+||.+.. +....+..+. .+...+| +++++ ++++++. +.
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~-s~dg~~~~~~s~~~-~~ 133 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSG-VDTGEAVVFTGATE-DR 133 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEE-EECSSCEEEEEECS-SC
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-Cceeeee-CCCCCeEEEEecCC-CC
Confidence 344454 58899999999 77777765 45566665533 2222343332 2445677 66664 4444444 45
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccccCCCC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
+.|||+.+++ ...+..... ..++|+|+|..++.++.+ ..+.+|+... +.
T Consensus 134 ~~l~d~~~g~--------------~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~--------- 186 (582)
T 3o4h_A 134 VALYALDGGG--------------LRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG--------- 186 (582)
T ss_dssp EEEEEEETTE--------------EEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC---------
T ss_pred ceEEEccCCc--------------EEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC---------
Confidence 5699998875 122222222 689999999988877765 4555565422 21
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecCCCCCCeeEEE--------
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVT-------- 427 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~-------- 427 (1395)
...+..|.+.+..++|+||| ++|+++..|+ .|++||+.++++. .+.+|.. .+..++
T Consensus 187 -----------~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 187 -----------LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLG 252 (582)
T ss_dssp -----------CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEE
T ss_pred -----------ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-Chhhhhhcccccee
Confidence 34566788899999999999 7888888888 8999999999887 7788876 788888
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |||.+++++. .|++++||++ + +++.. .... ...++|+ +|.++++++
T Consensus 253 ~s----pdg~~~~~~~-~~g~~~l~~~--g------------~~~~~---~~~~---------v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 253 YL----PDGRLAVVAR-REGRSAVFID--G------------ERVEA---PQGN---------HGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp EC----TTSCEEEEEE-ETTEEEEEET--T------------EEECC---CSSE---------EEEEEEE-TTEEEEEEE
T ss_pred Ec----CCCcEEEEEE-cCCcEEEEEE--C------------Ceecc---CCCc---------eEEEEec-CCEEEEEEc
Confidence 99 9996666654 8999999999 6 44431 1111 1257888 999998888
Q ss_pred CCCe---EEEEEc
Q 039790 508 KKNA---IYAIHM 517 (1395)
Q Consensus 508 ~Dg~---I~iWdl 517 (1395)
.+.. |++|+.
T Consensus 301 ~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 301 SLSTPPRIVSLPS 313 (582)
T ss_dssp ETTEEEEEEEETT
T ss_pred CCCCCCeEEEEcC
Confidence 7754 566654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=172.58 Aligned_cols=256 Identities=9% Similarity=0.049 Sum_probs=164.4
Q ss_pred cceeeeeCCCCCEEE-----EEEecCCCEEEEEEc-CC--eEEEEECCCCceEEe-ccCCCCeEEEEEeeCCCCEEEEEE
Q 039790 207 TPITKYISDPGLVLG-----RQIAVNRNYICYGLK-LG--NIRILNIITALRSLL-RGHTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~-----va~Spdg~~LasGs~-DG--~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~dg~~LaSgs 277 (1395)
..+..+..|...+.. .+|+|||++|++++. +| .|.+||+.++....+ .+|...+..++| ++||++|+.++
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~-spdg~~l~~~~ 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFL-SPDDDALFYVK 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEE-CTTSSEEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEE-cCCCCEEEEEe
Confidence 455666666665555 789999999999987 66 488889998865444 455556667889 99999999999
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEE--EeCCCCeEEEEEe---------------------
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVC--WHPHKQEILMLAI--------------------- 334 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~--~sp~~~~lla~g~--------------------- 334 (1395)
.++.|++||+.+++ ...+...+...+.... +++++..++....
T Consensus 100 ~~~~l~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 100 DGRNLMRVDLATLE--------------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp TTTEEEEEETTTCC--------------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred CCCeEEEEECCCCc--------------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 99999999999887 2222233333333333 4777776554321
Q ss_pred -CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec-CCCcEEEEEeCC------CcEEEEeC
Q 039790 335 -GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ-WLTTRLASASLD------GTVKIWDD 406 (1395)
Q Consensus 335 -~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~D------g~IrIWDl 406 (1395)
...+++|+... +. ...+..+...+..++|+| || .+|+.++.+ ..|.+||.
T Consensus 166 ~~~~l~~~d~~~-g~--------------------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE--------------------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp CCEEEEEEETTT-CC--------------------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEET
T ss_pred CcceEEEEECCC-Cc--------------------eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeC
Confidence 12344444321 11 344445777899999999 88 777777653 37888887
Q ss_pred CCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCC----eEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 407 RKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNR----ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 407 ~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg----~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
..+. ...+..+.. ..+..+.|+ |||+.|+..+..++ .|++||+.+++ .+.+..+..+...
T Consensus 224 ~~~~-~~~l~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~----------~~~l~~~~~~~~~ 288 (388)
T 3pe7_A 224 DGTN-MRKVKTHAEGESCTHEFWV----PDGSALVYVSYLKGSPDRFIYSADPETLE----------NRQLTSMPACSHL 288 (388)
T ss_dssp TSCC-CEESCCCCTTEEEEEEEEC----TTSSCEEEEEEETTCCCEEEEEECTTTCC----------EEEEEEECCEEEE
T ss_pred CCCc-eEEeeeCCCCcccccceEC----CCCCEEEEEecCCCCCcceEEEEecCCCc----------eEEEEcCCCceee
Confidence 6554 344444432 257889999 99998866543322 39999998871 0233333321100
Q ss_pred cccccccccceEEEEeCCCCEEEEE---------eCCCeEEEEEcCCC
Q 039790 482 ELRLEDAFFNQVVALNRAGLFLLAN---------AKKNAIYAIHMDYG 520 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~dg~~LaSg---------s~Dg~I~iWdl~~g 520 (1395)
... .....|++||.+|+.. ..+..|++||+..+
T Consensus 289 ~~~------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 289 MSN------YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEC------TTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred eec------CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 000 0114689999987754 45678999999875
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-14 Score=168.42 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=163.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC-CCceEEeccCC--CCeEEEEEeeCCCCE--EEEEE-------------C
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII-TALRSLLRGHT--QRVTDMAFFAEDVHL--LASAS-------------V 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~-~~~~~~l~~H~--~~V~slaf~s~dg~~--LaSgs-------------~ 278 (1395)
..+..++|++||++|++++.+ .|.+||+. ++.+..+..|. +.+.+++| +++|++ +++++ .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDA-DTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCT-TSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEE-CCCCCEEEEEEecCCcceeccceeecC
Confidence 457789999999999999887 99999997 66543222221 34667889 899984 55553 6
Q ss_pred CCcEEEEECCC-CCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCC
Q 039790 279 DGRFFIWNITE-GPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 279 DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+|++++|++.. ++ ....+.... .+...+..++|+|+++.++++.. ++.+.+|+....++.
T Consensus 118 ~g~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------ 180 (365)
T 1jof_A 118 AGYGNVFSVSETGK-----------LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------ 180 (365)
T ss_dssp CCEEEEEEECTTCC-----------EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------
T ss_pred CceEEEEccCCCCc-----------CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------
Confidence 89999999974 43 222222222 24456778999999998877765 456777765321211
Q ss_pred CCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC--CCcee---EEec---CC-CC-C-
Q 039790 356 EPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR--KSTPL---AVLR---PY-DG-H- 421 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~--sg~~l---~tl~---~h-~~-~- 421 (1395)
..+..+. .|...+..++|+||| ++|++++ .+++|.+|++. +|+.. ..+. .+ .+ .
T Consensus 181 -----------~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 181 -----------ELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp -----------EEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred -----------EEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 0011222 246679999999999 6776666 47899999765 56543 2222 11 11 1
Q ss_pred ------CeeEEE-EeecCCCCCcEEEEEecCCC-----eEEEEECC-CCCCCCCCCCcccccEEE---EEeccCcccccc
Q 039790 422 ------PVNCVT-FLIGPHPQHIVLITGGPLNR-----ELKIWASA-EEEGWLLPSDIESWKCTQ---TLELKSSAELRL 485 (1395)
Q Consensus 422 ------~V~sV~-fs~~~~pdg~~L~s~Gs~Dg-----~I~IWDl~-tg~~~~~~~~~~~~~~l~---tl~~h~~~i~~~ 485 (1395)
.+..++ |+ |||++|++++..++ +|++|++. ++ +... .+..+....
T Consensus 249 ~~~~~~~~~~i~~~s----pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~--- 309 (365)
T 1jof_A 249 ETGKGLYRADVCALT----FSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGG--- 309 (365)
T ss_dssp TTSSBSEEEEEEEEC----TTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCT---
T ss_pred ccccccccccEEEEC----CCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCc---
Confidence 378999 99 99999887653333 89999996 44 4332 122222221
Q ss_pred cccccceEEEEeC---CCCEEEEEeC-CCeEEEEEcCC
Q 039790 486 EDAFFNQVVALNR---AGLFLLANAK-KNAIYAIHMDY 519 (1395)
Q Consensus 486 ~~~~~~~~l~~S~---dg~~LaSgs~-Dg~I~iWdl~~ 519 (1395)
..++|+| ||.+|++++. ++.|++|+++.
T Consensus 310 ------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 310 ------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ------TCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ------ccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 1378888 8999988876 48999999875
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=165.62 Aligned_cols=258 Identities=9% Similarity=0.015 Sum_probs=169.7
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~Las 233 (1395)
......+++++.++.|++||.. .|+. +..+..+. ..+.+++|+++|+++++
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~--~~~~--------------------------~~~~~~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVA--SDTV--------------------------YKSCVMPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETT--TTEE--------------------------EEEEECSSCCSSCEEEECTTSSEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECC--CCcE--------------------------EEEEecCCCCCCceeEECCCCCEEEE
Confidence 3445778889999999999943 1111 11222111 24568899999987654
Q ss_pred -EEcCCeEEEEECCCCce-EEecc-C-----CCCeEEEEEeeCCCCEEEEEECC------------CcEEEEECCCCCCC
Q 039790 234 -GLKLGNIRILNIITALR-SLLRG-H-----TQRVTDMAFFAEDVHLLASASVD------------GRFFIWNITEGPDE 293 (1395)
Q Consensus 234 -Gs~DG~IrIWd~~~~~~-~~l~~-H-----~~~V~slaf~s~dg~~LaSgs~D------------gtV~IWdl~tg~~~ 293 (1395)
+..++.|++||+.++.. ..+.. + ...+.+++| +++|++|++++.+ +.|++||+.+++..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 45689999999998853 33432 2 234789999 8999999999866 89999999875411
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC---CC-----ccCcccc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE---PL-----KCPVDEL 365 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~---~~-----~~~~~~~ 365 (1395)
. .+..... ...+.+++|++++. ++++ ++.+.+|+.........+.... +. ....|..
T Consensus 139 ~-----------~~~~~~~-~~~~~~~~~s~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 139 K-----------PVRTFPM-PRQVYLMRAADDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp C-----------CSEEEEC-CSSCCCEEECTTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred c-----------eeeeccC-CCcccceeECCCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence 1 1112222 23577899999998 6664 3347777654322111111110 00 0000000
Q ss_pred -------------------------------------ccc---eEEEcccCCCeEEEEEec-CCCcEEEEEeCCCcEEEE
Q 039790 366 -------------------------------------ING---VQLVGKHDGEITELSMCQ-WLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 366 -------------------------------------~~~---~~~l~~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIW 404 (1395)
..+ ...+..+...+.+++|+| ++ ++|+++ ++.|++|
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKY 280 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEE
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEE
Confidence 000 111122445678899999 88 677777 8899999
Q ss_pred eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 405 DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 405 Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
|+.+++.+..+..+. .+.+++|+ ++|++|++++ .++.|++||+.++ +.+..+...
T Consensus 281 d~~~~~~~~~~~~~~--~~~~~~~s----~dg~~l~~~~-~~~~v~v~d~~~~------------~~~~~~~~~ 335 (349)
T 1jmx_B 281 DLKQRKLIKAANLDH--TYYCVAFD----KKGDKLYLGG-TFNDLAVFNPDTL------------EKVKNIKLP 335 (349)
T ss_dssp ETTTTEEEEEEECSS--CCCEEEEC----SSSSCEEEES-BSSEEEEEETTTT------------EEEEEEECS
T ss_pred ECccCeEEEEEcCCC--CccceEEC----CCCCEEEEec-CCCeEEEEecccc------------ceeeeeecC
Confidence 999999888887543 58899999 9999988865 8899999999888 888888765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-14 Score=182.51 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=165.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCC-----eEEEEEeeCCCCEEEEEECC---------CcE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQR-----VTDMAFFAEDVHLLASASVD---------GRF 282 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~-----V~slaf~s~dg~~LaSgs~D---------gtV 282 (1395)
...++.|++||.+|+++ ||.|++||+.++. ...+.+|... ..+++| ++||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI-SPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEE-CTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEE-CCCCCEEEEEECCeeeEEEccceEE
Confidence 34578899999999987 8999999999985 5566776643 245888 9999999999887 566
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
++||+.+++.. .+..+...+....|+|+|..|+.+ .++.|.+|+... +....+..++.
T Consensus 95 ~~~d~~~~~~~---------------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~-~~~~~lt~~g~----- 152 (740)
T 4a5s_A 95 DIYDLNKRQLI---------------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN-LPSYRITWTGK----- 152 (740)
T ss_dssp EEEETTTTEEC---------------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT-SCCEECCSCCB-----
T ss_pred EEEECCCCcEE---------------EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC-CceEEEcCCCC-----
Confidence 79999988621 123345567889999999987665 667777776533 22111111100
Q ss_pred cccccceEEEcccCCC---------eEEEEEecCCCcEEEEEeCCC----------------------------------
Q 039790 363 DELINGVQLVGKHDGE---------ITELSMCQWLTTRLASASLDG---------------------------------- 399 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~---------V~slafspdg~~~LaSgs~Dg---------------------------------- 399 (1395)
....+.++.+. ...+.||||| ++||.++.|.
T Consensus 153 -----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 153 -----EDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp -----TTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred -----ccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 01122333322 2358999999 7888876432
Q ss_pred --cEEEEeCCC---Cc--eeEEec------CCCCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCC
Q 039790 400 --TVKIWDDRK---ST--PLAVLR------PYDGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 400 --~IrIWDl~s---g~--~l~tl~------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+|++||+.+ +. ....+. +|.. .+..++|+ |||+.++.... .+..|++||+.+++.
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ws----pdg~~~~~~~~r~~~~~~i~~~d~~tg~~---- 297 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWA----TQERISLQWLRRIQNYSVMDICDYDESSG---- 297 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEE----ETTEEEEEEEESSTTEEEEEEEEEETTTT----
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEe----CCCeEEEEEeCCCCCEEEEEEEECCCCcc----
Confidence 488899988 73 233443 3665 89999999 99997665432 234799999988710
Q ss_pred CCcccccEEE--EE--eccCcccccccccccceEEEEeCCCCEEE-EEeC-C--CeEEEEEcCCCC
Q 039790 464 SDIESWKCTQ--TL--ELKSSAELRLEDAFFNQVVALNRAGLFLL-ANAK-K--NAIYAIHMDYGP 521 (1395)
Q Consensus 464 ~~~~~~~~l~--tl--~~h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~-D--g~I~iWdl~~g~ 521 (1395)
.|.|.. ++ ..+...+.. +......|++||+.|+ ..+. + ..|++|++..+.
T Consensus 298 ----~~~~~~~~~l~~~~~~~~v~~----~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 298 ----RWNCLVARQHIEMSTTGWVGR----FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp ----EEEECGGGCEEEECSSSCSSS----SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred ----ccceeEEEEeeeccCCceEcc----CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 011332 11 223322210 0012467999999876 6653 3 458888887653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-12 Score=154.19 Aligned_cols=310 Identities=10% Similarity=0.031 Sum_probs=176.9
Q ss_pred CCEEEEEEc----CCeEEEEECC--CCceEEec-cCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCCC
Q 039790 228 RNYICYGLK----LGNIRILNII--TALRSLLR-GHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 228 g~~LasGs~----DG~IrIWd~~--~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~~ 296 (1395)
..+++.|++ ++.|++|+++ ++.+..+. .|...+..++| ++++++|++++.+ +.|.+|++....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~-spdg~~l~~~~~~~~~~~~v~~~~~~~~~----- 86 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIP-SADGKFVYSVNEFSKDQAAVSAFAFDKEK----- 86 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEE-CTTSSEEEEEECCSSTTCEEEEEEEETTT-----
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEE-CCCCCEEEEEEccCCCCCcEEEEEEeCCC-----
Confidence 345666643 5689999774 45322111 17778889999 9999999999986 799999987631
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
+ .+..+.....+......+++ ++..++++.. ++.+.+|+....+...... ........+......+
T Consensus 87 ----g-~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~------~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 87 ----G-TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS------DVIEFKGSGPDKERQT 153 (361)
T ss_dssp ----T-EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS------EEEECCCCCSCTTTCS
T ss_pred ----C-cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc------eeEEccCCCCCccccC
Confidence 1 11223333333444556666 7777777775 4556666654322210000 0000000000000113
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------e------EEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------L------AVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------l------~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+.+++|+|+|..+++++..++.|++|++..... + ..+....+..+..++|+ |||++|++++
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~v~~ 229 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN----SDGKFAYLIN 229 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEE
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc----CCCCEEEEEc
Confidence 345789999999933445555689999998875431 1 12222222368999999 9999988877
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC--CCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK--KNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~--Dg~I~iWdl~~g~ 521 (1395)
..++.|++||+.++ ....+..+....... .....++|++||++|+++.. ++.|.+|++....
T Consensus 230 ~~~~~v~v~~~~~g----------~~~~~~~~~~~~~~~------~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~ 293 (361)
T 3scy_A 230 EIGGTVIAFRYADG----------MLDEIQTVAADTVNA------QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN 293 (361)
T ss_dssp TTTCEEEEEEEETT----------EEEEEEEEESCSSCC------CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred CCCCeEEEEEecCC----------ceEEeEEEecCCCCC------CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence 67999999999865 112233333222110 01136899999998866554 5899999996311
Q ss_pred CCCCcceeeeeeeecc--ccEEEEecCCCCcC--c-CCCCeEEEE--EcCCCceeee----cccceEEecC
Q 039790 522 NPASTRMDYIAEFTVT--MPILSLTGTTTDAS--P-DGEHIVQIY--CVQTQAIQQY----ALDLSQCLPP 581 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~--~~ils~~~~~~d~~--~-s~dg~V~lW--dv~t~~i~~~----~~~~~~cl~~ 581 (1395)
..+..+..+... ...+.|+... ..+ . ..++.|.+| |..++++... ......|+.|
T Consensus 294 ----g~~~~~~~~~~g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 294 ----GTLTKVGYQLTGIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp ----CCEEEEEEEECSSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred ----CcEEEeeEecCCCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 122233333221 1223444333 212 2 256789996 5557776533 3334556544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-13 Score=150.25 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=171.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec------cCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR------GHTQRVTDMAFFAEDVHLLASASV-DGRFFIWN 286 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~------~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWd 286 (1395)
++...+.+++++++|+++++...++.|++||........+. +|...+.+++|...++.++++... ++.|++||
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 45577899999999998888888999999998865555543 345678999994366766666643 88999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
.+++ .+..+. ........+++++++. ++++.. ++.+.+|+.. +..
T Consensus 107 -~~g~--------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~--------------- 153 (286)
T 1q7f_A 107 -QYGQ--------------FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNV--------------- 153 (286)
T ss_dssp -TTSC--------------EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCE---------------
T ss_pred -CCCc--------------EEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC--CCE---------------
Confidence 4454 122222 2334567899999886 555544 5667777632 110
Q ss_pred cccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEE
Q 039790 365 LINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 365 ~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+..+. ++...+.+|+|+++| +++++.+.++.|++||. .+..+..+..+ .. .+..|+++ ++|.+++
T Consensus 154 ----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~-~p~~i~~d----~~G~l~v 222 (286)
T 1q7f_A 154 ----LHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN-YPIGVGIN----SNGEILI 222 (286)
T ss_dssp ----EEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC-SEEEEEEC----TTCCEEE
T ss_pred ----EEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcC-CCCEEEEEccCCccC-CCcEEEEC----CCCCEEE
Confidence 22222 345678999999998 78888888999999996 56777777644 23 78999999 8998777
Q ss_pred EEecCCC-eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNR-ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg-~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.. .++ .|++||. ++ +.+..+..+.... ....++++++|.++++ +.|+.|++|++..
T Consensus 223 ~~~-~~~~~i~~~~~-~g------------~~~~~~~~~~~~~-------~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 223 ADN-HNNFNLTIFTQ-DG------------QLISALESKVKHA-------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEC-SSSCEEEEECT-TS------------CEEEEEEESSCCS-------CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EeC-CCCEEEEEECC-CC------------CEEEEEcccCCCC-------cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 754 665 9999995 34 6666776543221 1235899999998888 5699999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-13 Score=174.60 Aligned_cols=265 Identities=10% Similarity=-0.015 Sum_probs=166.2
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-----CCEEEEEE
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-----GLVLGRQI 224 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-----~~V~~va~ 224 (1395)
..+.+.+++..++++ |+.|++|++... + ....+.+|. .....+.|
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 69 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYG--N--------------------------SSVFLENSTFDEFGHSINDYSI 69 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTC--C--------------------------EEEEECTTTTTTCCSCCCEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCC--c--------------------------eEEEEechhhhhhcccccceEE
Confidence 346677777777775 889999995421 1 111122222 12345789
Q ss_pred ecCCCEEEEEEcC---------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 225 AVNRNYICYGLKL---------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 225 Spdg~~LasGs~D---------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
||||++|++++.+ +.+.|||+.++....+..|.+.+...+| +|||+.||.+. |+.|++||+.++.....
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~-SPdG~~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTW-SPVGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEE-CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEE-CCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence 9999999999876 5677999999988888889999999999 99999999885 68999999988762110
Q ss_pred CcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCcc---------ccccCCC
Q 039790 296 KPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKG---------ERFSAEE 356 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~---------~~~s~~~ 356 (1395)
.. .+... .++.++. .....+.|+|+|..|+....++. +..|+....... ..|...+
T Consensus 148 t~--~g~~~---~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TW--TGKED---IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CS--CCBTT---TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred cC--CCCcc---ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 00 00000 0000111 12235899999998887765544 333333111100 0011111
Q ss_pred ----CCccCcccccc---c----eEEEc------ccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCc----e
Q 039790 357 ----PLKCPVDELIN---G----VQLVG------KHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKST----P 411 (1395)
Q Consensus 357 ----~~~~~~~~~~~---~----~~~l~------~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg~----~ 411 (1395)
...+.++++.. + ...+. +|...+..++|+||| ++++.... +..|++||+.+|+ |
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 11223333333 2 23333 378889999999998 66655433 3479999999987 3
Q ss_pred eE--Ee--cCCCCCCee-----EEEEeecCCCCCcEEE-EEecCC--CeEEEEECCCC
Q 039790 412 LA--VL--RPYDGHPVN-----CVTFLIGPHPQHIVLI-TGGPLN--RELKIWASAEE 457 (1395)
Q Consensus 412 l~--tl--~~h~~~~V~-----sV~fs~~~~pdg~~L~-s~Gs~D--g~I~IWDl~tg 457 (1395)
.. .+ .+|.+ +|. .+.|+ |||+.|+ ..+..+ ..|++||+.++
T Consensus 302 ~~~~~l~~~~~~~-~v~~~~~~~p~fs----pDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 302 LVARQHIEMSTTG-WVGRFRPSEPHFT----LDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp CGGGCEEEECSSS-CSSSSSCCCCEEC----TTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred eEEEEeeeccCCc-eEccCcCCCceEc----CCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 22 22 45665 665 78999 9999877 554344 46888888765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-13 Score=159.69 Aligned_cols=251 Identities=10% Similarity=0.033 Sum_probs=154.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEE-eeCCCCEEEEE---------------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAF-FAEDVHLLASA--------------- 276 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf-~s~dg~~LaSg--------------- 276 (1395)
++...+.+..|+|||++|++++.++.|++||+.++.. ..+..+.+.+....| .++++.+|+..
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 4444444567999999999999999999999999854 344555555654444 27888888753
Q ss_pred -------ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCC------eEEEEE
Q 039790 277 -------SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGN------RILKID 342 (1395)
Q Consensus 277 -------s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~------~ii~~d 342 (1395)
+.++.|++||+.+++ ...+ ..+...+..+.|+| ++..++.+..+. .+..++
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~--------------~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGE--------------STVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCC--------------EEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred hhhhhccCCcceEEEEECCCCc--------------eEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 244789999999876 1111 22344567899999 888777766532 455555
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccC--CCeEEEEEecCCCcEEEEEe-CCC----cEEEEeCCCCce--eE
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--GEITELSMCQWLTTRLASAS-LDG----TVKIWDDRKSTP--LA 413 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--~~V~slafspdg~~~LaSgs-~Dg----~IrIWDl~sg~~--l~ 413 (1395)
.... . ...+..+. ..+..++|+||| ++|+..+ .++ .|++||+.+++. +.
T Consensus 223 ~~~~-~--------------------~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (388)
T 3pe7_A 223 EDGT-N--------------------MRKVKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENRQLT 280 (388)
T ss_dssp TTSC-C--------------------CEESCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred CCCC-c--------------------eEEeeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence 3221 1 22233333 357889999999 5554433 322 399999999874 33
Q ss_pred EecCCCC--CCeeEEEEeecCCCCCcEEEEEe--------cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 414 VLRPYDG--HPVNCVTFLIGPHPQHIVLITGG--------PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 414 tl~~h~~--~~V~sV~fs~~~~pdg~~L~s~G--------s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
.+.++.. .....+.|+ |||++|+... ..+..|++||+.++ +. ..+..+.....
T Consensus 281 ~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~------------~~-~~l~~~~~~~~ 343 (388)
T 3pe7_A 281 SMPACSHLMSNYDGSLMV----GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG------------TQ-HRVARHDTSWK 343 (388)
T ss_dssp EECCEEEEEECTTSSEEE----EEECCC------------CCCCEEEEEETTTT------------EE-EEEEECCCCCC
T ss_pred cCCCceeeeecCCCCeEc----cCCCcceeEeeeccccccCCCCEEEEEeccCC------------ce-EEeccccCccc
Confidence 4443110 012234798 9999888642 35779999999876 43 33444432000
Q ss_pred c--ccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcC
Q 039790 484 R--LEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMD 518 (1395)
Q Consensus 484 ~--~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~ 518 (1395)
. .........++|++||++|+..+ .++...||.++
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 0 00000122478999999887666 46666666554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-12 Score=151.63 Aligned_cols=248 Identities=10% Similarity=0.129 Sum_probs=175.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcC------------------------CeEEEEECCCCceEEec--cCCCCeEEEEEeeCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKL------------------------GNIRILNIITALRSLLR--GHTQRVTDMAFFAED 269 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~D------------------------G~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~d 269 (1395)
.+.+.+++++++|+++++...+ +.|.+||..++.+.... ++-.....|+| .++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~-d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI-DTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE-CTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE-CCC
Confidence 4779999999999999888877 47999999887544332 45568999999 889
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe------cCCCCCccEEEEeCCCCeEEEEEe--CCeEEEE
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL------ADGDSVHPRVCWHPHKQEILMLAI--GNRILKI 341 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~------~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~ 341 (1395)
|+++++...++.|++||...... .+..+... ..+-.....++++++++.++++.. ++.|.+|
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~----------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEG----------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSC----------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeE----------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 99999998999999999864320 00011000 122335678999995556666663 5667666
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEc----------ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVG----------KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~----------~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
+.. +.. +..+. ++-.....|+|+++++.++++...+++|++||..+|+.
T Consensus 172 ~~~--g~~-------------------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~ 230 (329)
T 3fvz_A 172 SPS--GKF-------------------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF 230 (329)
T ss_dssp CTT--SCE-------------------EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred cCC--CCE-------------------EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence 631 111 12222 12345899999999448888888999999999998999
Q ss_pred eEEec--CCCCCCeeEEEEeecCCCCCcEEEEEe------cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 412 LAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGG------PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 412 l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~G------s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
+.++. .+.. .+.+++|+ | +..+++.| ..+..|++||+.++ +++.++.......
T Consensus 231 ~~~~~~~~~~~-~~~~~~~~----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~~~~~~~- 291 (329)
T 3fvz_A 231 VREIKHASFGR-NVFAISYI----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFKPVRKHF- 291 (329)
T ss_dssp EEEECCTTTTT-CEEEEEEE----T-TEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEECCSSSCC-
T ss_pred EEEEeccccCC-Ccceeeec----C-CEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEcCCCCcc-
Confidence 99885 3444 78999998 7 44443333 23458999999888 8887774211111
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.....++++++|.++++...++.|++|++..
T Consensus 292 -----~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 -----DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 1123689999999999999999999999864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=160.96 Aligned_cols=238 Identities=8% Similarity=0.087 Sum_probs=152.4
Q ss_pred CEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
.+.+++|+|||++|+++... ..|.+||+.++....+..+...+. .+.| ++||++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-spdg~~l~~~~~~~~l~~~d~~~~~~- 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFI-STDERAFFYVKNELNLMKVDLETLEE- 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEE-CTTSSEEEEEETTTEEEEEETTTCCE-
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceE-CCCCCEEEEEEcCCcEEEEECCCCCc-
Confidence 36678899999999888653 478899999987666655554443 4788 99999999999999999999988761
Q ss_pred CCCcccccceEEEEEEecCCCCCccE-------------------EEEeCCCCeEEEEE-----eCCeEEEEEcCCCCcc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPR-------------------VCWHPHKQEILMLA-----IGNRILKIDSNRVGKG 349 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~-------------------v~~sp~~~~lla~g-----~~~~ii~~d~~~~~~~ 349 (1395)
..+...+...... +.|+|++..++... ....+.+|+... +.
T Consensus 115 -------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~- 179 (396)
T 3c5m_A 115 -------------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GE- 179 (396)
T ss_dssp -------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CC-
T ss_pred -------------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-Cc-
Confidence 1111111110000 23455554433321 223344444321 11
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEec-CCCcEEEEEeCC------CcEEEEeCCCCceeEEecCCC-CC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ-WLTTRLASASLD------GTVKIWDDRKSTPLAVLRPYD-GH 421 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~D------g~IrIWDl~sg~~l~tl~~h~-~~ 421 (1395)
...+..+...+..+.|+| ++ .+|+.++.+ ..|.+||+..+.. ..+..+. ..
T Consensus 180 -------------------~~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 238 (396)
T 3c5m_A 180 -------------------LEVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGE 238 (396)
T ss_dssp -------------------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTE
T ss_pred -------------------EEeeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCc
Confidence 223334677899999999 66 666666543 3688999876653 3333332 22
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
.+..+.|+ |||++|+.++..+ +.|++||+.++ +......... . ...|+
T Consensus 239 ~~~~~~~s----pdg~~l~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~~~----------~--~~~~s 290 (396)
T 3c5m_A 239 SCTHEFWI----PDGSAMAYVSYFKGQTDRVIYKANPETL------------ENEEVMVMPP----------C--SHLMS 290 (396)
T ss_dssp EEEEEEEC----TTSSCEEEEEEETTTCCEEEEEECTTTC------------CEEEEEECCS----------E--EEEEE
T ss_pred cccceEEC----CCCCEEEEEecCCCCccceEEEEECCCC------------CeEEeeeCCC----------C--CCCcc
Confidence 58889999 9999887765222 45999999876 4333222111 1 16788
Q ss_pred C-CCCEEEEEe----------------CCCeEEEEEcCCCC
Q 039790 498 R-AGLFLLANA----------------KKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~-dg~~LaSgs----------------~Dg~I~iWdl~~g~ 521 (1395)
+ ||.+|++++ .++.|++||+..+.
T Consensus 291 ~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 291 NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8 999888754 34789999998754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-13 Score=170.49 Aligned_cols=252 Identities=12% Similarity=0.006 Sum_probs=168.6
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEE--EcCCeEEEEEC-CCCceEEeccCCCCeE---------EEEEe-eCCCCE-EEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYG--LKLGNIRILNI-ITALRSLLRGHTQRVT---------DMAFF-AEDVHL-LASA 276 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasG--s~DG~IrIWd~-~~~~~~~l~~H~~~V~---------slaf~-s~dg~~-LaSg 276 (1395)
.+.+|...+..++|++++-+++++ ..++..+||.. .++....+..|...|. ...|+ +|||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999877666666 55889999995 4456777888877777 67774 389998 7765
Q ss_pred EC-CCcEEEEECC--C-CCCCCCCcccccceEEEEEEecC-----CCCCccEEEEeCCCCeEEEEEeC----------Ce
Q 039790 277 SV-DGRFFIWNIT--E-GPDEEDKPQILGKIVVAIQILAD-----GDSVHPRVCWHPHKQEILMLAIG----------NR 337 (1395)
Q Consensus 277 s~-DgtV~IWdl~--t-g~~~~~~~~~~~~~i~~l~~~~~-----~~~~v~~v~~sp~~~~lla~g~~----------~~ 337 (1395)
+. +..|++|++. . +.. ..+.. +...+..++|+|+++.|+++..+ ..
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~---------------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVP---------------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCC---------------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ECCCCeEEEEcCCCCCCCCC---------------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 54 5667777765 2 331 11112 34456789999999988888765 35
Q ss_pred EEEEEcCCC-----CccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCC--------cEEE
Q 039790 338 ILKIDSNRV-----GKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDG--------TVKI 403 (1395)
Q Consensus 338 ii~~d~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg--------~IrI 403 (1395)
+++|+.... +. ...+. .+...+..++||||| ++|+.++.++ .|++
T Consensus 163 i~~~~~~~~~~~~~~~--------------------~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 163 LAAVPLDGSAAADRSA--------------------VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp EEEEETTSTTTTCGGG--------------------SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEE
T ss_pred EEEEECCCCccccCCc--------------------eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEE
Confidence 666655321 11 23333 455678889999999 7888777553 7999
Q ss_pred EeCC-CC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 404 WDDR-KS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 404 WDl~-sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
||+. +| .......+|.. .+..+.|+ |||++++++ +.|+ .|.+||+.++ ++...+..
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~-~~~~~~~s----pdg~l~~~~-~~~~~~~l~~~~~~~~------------~~~~l~~~ 283 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEE-AIAQAEWA----PDGSLIVAT-DRTGWWNLHRVDPATG------------AATQLCRR 283 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTB-CEEEEEEC----TTSCEEEEE-CTTSSCEEEEECTTTC------------CEEESSCC
T ss_pred EEECCCCcccccEEeCCCCCc-eEcceEEC----CCCeEEEEE-CCCCCeEEEEEECCCC------------ceeecccc
Confidence 9998 57 44444455555 89999999 999966654 4788 5666666555 43332222
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+. .........-...++|++++.+++++.. +.++||.++
T Consensus 284 ~~-~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 284 EE-EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SS-BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred cc-cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 22 1111111111234888999999999998 999999554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-12 Score=151.76 Aligned_cols=241 Identities=13% Similarity=0.095 Sum_probs=149.5
Q ss_pred EEEEEEcC--CeEEEEEC--CCCceEEec----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC-CCCCCCCCcccc
Q 039790 230 YICYGLKL--GNIRILNI--ITALRSLLR----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT-EGPDEEDKPQIL 300 (1395)
Q Consensus 230 ~LasGs~D--G~IrIWd~--~~~~~~~l~----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~-tg~~~~~~~~~~ 300 (1395)
+|++|++. +.|.+|++ .++.+..+. ++...+..++| ++++++|++++.+ .|.+||+. +++
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~-spdg~~l~~~~~~-~v~~~~~~~~g~--------- 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF-DHERKNIYGAAMK-KWSSFAVKSPTE--------- 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE-CTTSSEEEEEEBT-EEEEEEEEETTE---------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEE-CCCCCEEEEEccc-eEEEEEECCCCC---------
Confidence 45666653 56888765 455443332 23457889999 8999999999988 99999997 554
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeE-EEEE--------------eCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEI-LMLA--------------IGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~l-la~g--------------~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
....... ..+ .....++|+|+++.+ ++++ .++.+.+|+....+..
T Consensus 73 --~~~~~~~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~---------------- 132 (365)
T 1jof_A 73 --IVHEASH-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL---------------- 132 (365)
T ss_dssp --EEEEEEE-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE----------------
T ss_pred --EEEeeEe-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC----------------
Confidence 1111111 111 235568999999863 3333 3555666655322211
Q ss_pred ccceEEE-cccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC-CCcee--EEec--CCCCCCeeEEEEeecCCCCCcE
Q 039790 366 INGVQLV-GKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR-KSTPL--AVLR--PYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 366 ~~~~~~l-~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~-sg~~l--~tl~--~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+..+ ..+...+.+++|+||| ++|++++ .++.|++||+. +|+.. ..+. .|.. .+..++|+ |||++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~-~p~~~~~s----pdg~~ 206 (365)
T 1jof_A 133 EKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD-HPRWVAMH----PTGNY 206 (365)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC-CEEEEEEC----TTSSE
T ss_pred cceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC-CCCEeEEC----CCCCE
Confidence 0001111 1255689999999999 6676665 46899999998 77643 3443 2343 79999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEE---EEEeccCcccccccc-----cccceEEE-EeCCCCEEEEEeC-
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCT---QTLELKSSAELRLED-----AFFNQVVA-LNRAGLFLLANAK- 508 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l---~tl~~h~~~i~~~~~-----~~~~~~l~-~S~dg~~LaSgs~- 508 (1395)
|++++..++.|.+|++.... +++. +.+......... +. .+....++ |++||++|+++..
T Consensus 207 l~v~~~~~~~v~v~~~~~~~----------g~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 207 LYALMEAGNRICEYVIDPAT----------HMPVYTHHSFPLIPPGIPD-RDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEETTTTEEEEEEECTTT----------CCEEEEEEEEESSCTTCCC-BCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCeEEEEEEeCCC----------CcEEEccceEEcCCCCcCC-cccccccccccccEEEECCCCCEEEEECCC
Confidence 98877568999999876310 0332 223211100000 00 01234588 9999998876653
Q ss_pred CC-----eEEEEEcC
Q 039790 509 KN-----AIYAIHMD 518 (1395)
Q Consensus 509 Dg-----~I~iWdl~ 518 (1395)
++ .|++|++.
T Consensus 276 ~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 276 NKFELQGYIAGFKLR 290 (365)
T ss_dssp SSTTSCCEEEEEEEC
T ss_pred CCCCCCCeEEEEEEC
Confidence 33 89999996
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-12 Score=143.95 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=173.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..+..+.....+++|+++|+ +++++..++.|++||..++ ...+..+...+.+++| .++|+++++...++.|++|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~-~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCL-NKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEE-CTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeE-CCCCcEEEEecCCCeEEEE
Confidence 34455556677889999999998 7788888999999999998 7777778888999999 8899988887778899999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEE---Ee--------------CCeEEEEEcCCCC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILML---AI--------------GNRILKIDSNRVG 347 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~---g~--------------~~~ii~~d~~~~~ 347 (1395)
|..+++. ........ .....+..++++++|..+++. |. .+.+++++.. +
T Consensus 96 d~~~g~~-----------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g 162 (296)
T 3e5z_A 96 REPGGEW-----------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G 162 (296)
T ss_dssp CSTTCCE-----------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S
T ss_pred cCCCCcE-----------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C
Confidence 9987761 10111111 112345679999988644432 21 2355555432 1
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCce---eEEecCCCCCCe
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTP---LAVLRPYDGHPV 423 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~---l~tl~~h~~~~V 423 (1395)
. ...+..+....+.++|+|++ ++|++.+.++.|++||+. .+.. ...+..+.+ .+
T Consensus 163 ~--------------------~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p 220 (296)
T 3e5z_A 163 T--------------------LSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG-KT 220 (296)
T ss_dssp C--------------------EEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS-CC
T ss_pred C--------------------EEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC-CC
Confidence 1 23344566678999999999 666888888999999987 5654 344433444 78
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE-eCCCCE
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL-NRAGLF 502 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~-S~dg~~ 502 (1395)
.+++|+ ++|+++++. ++.|.+||.. + +++..+..+.. +. .++| ++++..
T Consensus 221 ~~i~~d----~~G~l~v~~---~~~v~~~~~~-g------------~~~~~~~~~~~-~~---------~~~f~~~d~~~ 270 (296)
T 3e5z_A 221 DGLRVD----AGGLIWASA---GDGVHVLTPD-G------------DELGRVLTPQT-TS---------NLCFGGPEGRT 270 (296)
T ss_dssp CSEEEB----TTSCEEEEE---TTEEEEECTT-S------------CEEEEEECSSC-CC---------EEEEESTTSCE
T ss_pred CeEEEC----CCCCEEEEc---CCeEEEECCC-C------------CEEEEEECCCC-ce---------eEEEECCCCCE
Confidence 899999 999876653 7899999986 5 67777776654 32 4777 588888
Q ss_pred EEEEeCCCeEEEEEcCC
Q 039790 503 LLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~~ 519 (1395)
|+.++.+ .++-++..+
T Consensus 271 L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 271 LYMTVST-EFWSIETNV 286 (296)
T ss_dssp EEEEETT-EEEEEECSC
T ss_pred EEEEcCC-eEEEEEccc
Confidence 8887765 455555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-12 Score=165.41 Aligned_cols=238 Identities=9% Similarity=0.014 Sum_probs=157.4
Q ss_pred EEEEe--cCCCE-EEEEEc-CCeEEEEECC--C-CceEEecc-----CCCCeEEEEEeeCCCCEEEEEECC---------
Q 039790 221 GRQIA--VNRNY-ICYGLK-LGNIRILNII--T-ALRSLLRG-----HTQRVTDMAFFAEDVHLLASASVD--------- 279 (1395)
Q Consensus 221 ~va~S--pdg~~-LasGs~-DG~IrIWd~~--~-~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~D--------- 279 (1395)
...|+ |||++ |++++. +..|.+|++. + +....+.. |...+.+++| ++||++|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL-LPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE-ETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE-CCCCCEEEEEEecccCCCCCCc
Confidence 34455 99998 887654 5678888877 4 66666666 6778999999 9999999999887
Q ss_pred -CcEEEEECCC------CCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEeCC--------eEEEEEc
Q 039790 280 -GRFFIWNITE------GPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAIGN--------RILKIDS 343 (1395)
Q Consensus 280 -gtV~IWdl~t------g~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~--------~ii~~d~ 343 (1395)
..|++||+.+ +.. ..+. .+...+..+.|+|+|+.|+.++.++ .+.+|+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV---------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS---------------EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce---------------eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE
Confidence 5899999987 431 1222 3345566789999999888777553 4555555
Q ss_pred CCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecCCCCC
Q 039790 344 NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 344 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
...+.. .....+..+|...+..++|+||| +++++++.|+ .|.+||+.+++......++..
T Consensus 225 ~~~g~~----------------~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~- 286 (662)
T 3azo_A 225 TEDGRF----------------ADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEE- 286 (662)
T ss_dssp CTTSCE----------------EEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSB-
T ss_pred CCCCcc----------------cccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeeccccccc-
Confidence 322200 00133444567889999999999 5888888888 566777767765544443332
Q ss_pred C--------eeEEEEeecCCCCCcEEEEEecCCCeEEEE--ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccc
Q 039790 422 P--------VNCVTFLIGPHPQHIVLITGGPLNRELKIW--ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 422 ~--------V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW--Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
. +.+++|+ +++++++++. . +.++|| |+.++ . +..+..+...+.
T Consensus 287 ~~~p~w~~~~~~~~~~----~~~~~~~~~~-~-~~~~l~~~d~~~~------------~-~~~l~~~~~~~~-------- 339 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPL----ANGLIAVVHG-K-GAAVLGILDPESG------------E-LVDAAGPWTEWA-------- 339 (662)
T ss_dssp SSCCCCSTTCCSEEEC----TTSCEEEEEB-S-SSCEEEEEETTTT------------E-EEECCSSCCEEE--------
T ss_pred ccCccccccCceEeEe----CCCEEEEEEE-c-CccEEEEEECCCC------------c-EEEecCCCCeEE--------
Confidence 2 5688998 8898888865 6 999999 54443 3 455555433221
Q ss_pred eEE-EEeCCCCEEEEEeCCCe--EEEEEcCCC
Q 039790 492 QVV-ALNRAGLFLLANAKKNA--IYAIHMDYG 520 (1395)
Q Consensus 492 ~~l-~~S~dg~~LaSgs~Dg~--I~iWdl~~g 520 (1395)
.+ .++.++.++++++.+.. |++|++..+
T Consensus 340 -~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 340 -ATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp -EEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred -EEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 23 44444445555555554 555565554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=155.32 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=146.8
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEE-eccCCCCeEE-------------------EEEeeCCCCEEEEE----
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITALRSL-LRGHTQRVTD-------------------MAFFAEDVHLLASA---- 276 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~-l~~H~~~V~s-------------------laf~s~dg~~LaSg---- 276 (1395)
++.|+|||++|++++.++.|++||+.++.... +..+.+...+ ++| +++++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW-QPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC-CCCCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc-CCCCcceeeeeecc
Confidence 36799999999999999999999999885443 3334443333 234 5666665544
Q ss_pred -ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCC------eEEEEEcCCCCc
Q 039790 277 -SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGN------RILKIDSNRVGK 348 (1395)
Q Consensus 277 -s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~------~ii~~d~~~~~~ 348 (1395)
..++.|++||+.+++ ...+. .+...+..+.|+| ++..++.++.+. .+..++... +.
T Consensus 164 ~~~~~~l~~~d~~~g~--------------~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~ 227 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGE--------------LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN 227 (396)
T ss_dssp TCCCEEEEEEETTTCC--------------EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC
T ss_pred CCCcceEEEEECCCCc--------------EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc
Confidence 456789999998876 11111 2345567899999 676666665432 355554321 10
Q ss_pred cccccCCCCCccCccccccceEEEccc--CCCeEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCceeEEecCCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKH--DGEITELSMCQWLTTRLASASLD-----GTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h--~~~V~slafspdg~~~LaSgs~D-----g~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
...+..+ ...+..++|+||| ++|+.++.+ +.|++||+.+++...... ..+
T Consensus 228 --------------------~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~- 284 (396)
T 3c5m_A 228 --------------------VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP- 284 (396)
T ss_dssp --------------------CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-
T ss_pred --------------------eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-
Confidence 1222222 2357889999999 666665543 449999999887544332 222
Q ss_pred CeeEEEEeecCCC-CCcEEEEEec---------------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc--
Q 039790 422 PVNCVTFLIGPHP-QHIVLITGGP---------------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL-- 483 (1395)
Q Consensus 422 ~V~sV~fs~~~~p-dg~~L~s~Gs---------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-- 483 (1395)
.. +.|+ | ||++|+++++ .++.|++||+.++ +. ..+..+.....
T Consensus 285 -~~-~~~s----~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~------------~~-~~l~~~~~~~~~~ 345 (396)
T 3c5m_A 285 -CS-HLMS----NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK------------SA-QKLCKHSTSWDVL 345 (396)
T ss_dssp -EE-EEEE----CSSSSEEEEEECCC----------CCCCCCEEEEEETTTT------------BC-CEEEECCCCCCCB
T ss_pred -CC-CCcc----CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC------------ce-EEccCCCCccccc
Confidence 33 8999 8 9998887542 3478999999876 32 22333322100
Q ss_pred cccccccceEEEEeCCCCEEEEEeC-CCe--EEEEEcCCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAK-KNA--IYAIHMDYG 520 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~-Dg~--I~iWdl~~g 520 (1395)
............|++||.+|+..+. ++. |+++++..+
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 0000001123678999998877664 444 555555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-11 Score=139.44 Aligned_cols=243 Identities=7% Similarity=-0.042 Sum_probs=160.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECC----CcEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVD----GRFF 283 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~D----gtV~ 283 (1395)
+..+..+...+.+++|+++|++++++..++.|++||..++....+. .+...+.+++| .+++++++++..+ +.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~-~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI-HKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE-CTTSCEEEEECTTSSSCCEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEE-CCCCcEEEEeCCCCCCCceEE
Confidence 3455566678899999999998888888999999999988655443 56788999999 8899988887776 6899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-------CeEEEEEcCCCCccccccCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-------NRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-------~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
+||..++... .+.........+..+++++++. ++++... +.+++++... +.
T Consensus 116 ~~d~~~~~~~------------~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~~-------- 173 (333)
T 2dg1_A 116 AATENGDNLQ------------DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RT-------- 173 (333)
T ss_dssp EECTTSCSCE------------EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CC--------
T ss_pred EEeCCCCEEE------------EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC-CE--------
Confidence 9999876510 0100012334577899999885 4444442 4455554321 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEE--------ecCCCCCCeeEEE
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAV--------LRPYDGHPVNCVT 427 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~t--------l~~h~~~~V~sV~ 427 (1395)
...+..+...+..++|+++|..++++.+.++.|.+||+.+ +..+.. +.++ . .+..++
T Consensus 174 ------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~~~~i~ 239 (333)
T 2dg1_A 174 ------------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCC 239 (333)
T ss_dssp ------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEE
T ss_pred ------------EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C-CCCceE
Confidence 1222223345889999999833455666788999999864 443321 2233 2 688999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
++ ++|.++++.. .++.|.+||. .+ +.+..+..+..... +. .....++|++||..|+.++
T Consensus 240 ~d----~~G~l~v~~~-~~~~v~~~d~-~g------------~~~~~~~~~~~~~g--~~-~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 240 ID----SDDNLYVAMY-GQGRVLVFNK-RG------------YPIGQILIPGRDEG--HM-LRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EB----TTCCEEEEEE-TTTEEEEECT-TS------------CEEEEEECTTGGGT--CS-CBCCEEEECTTSCEEEEEE
T ss_pred EC----CCCCEEEEEc-CCCEEEEECC-CC------------CEEEEEEcCCCccc--cc-cCcceEEECCCCCEEEEEe
Confidence 98 8998777654 6899999998 44 56666654432000 00 0123588889986665555
Q ss_pred CC
Q 039790 508 KK 509 (1395)
Q Consensus 508 ~D 509 (1395)
.+
T Consensus 299 ~~ 300 (333)
T 2dg1_A 299 ND 300 (333)
T ss_dssp EC
T ss_pred Cc
Confidence 44
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=160.50 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=165.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCC-----eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc--------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLG-----NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-------- 281 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG-----~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-------- 281 (1395)
|...+.+++|||||++||+++.++ .|+|||+.++.......+...+.+++| ++||+.|+.++.|+.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~w-spDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW-THDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEE-CTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEE-EeCCCEEEEEEECCccccccccc
Confidence 444688899999999999886644 899999999865433222233778999 999999999998876
Q ss_pred --------EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-----CCeEEEEEcCCCCc
Q 039790 282 --------FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-----GNRILKIDSNRVGK 348 (1395)
Q Consensus 282 --------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-----~~~ii~~d~~~~~~ 348 (1395)
|++|++.++.... . .+.....+...+..+.|+|++++++.+.. +..+.+|+......
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~-------~---~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED-------I---LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC-------E---EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccCCCCEEEEEECCCCcccc-------e---EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 9999998765110 0 11111223445668999999998888776 34566666532100
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc--eeEEecCCCC-CC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKST--PLAVLRPYDG-HP 422 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~--~l~tl~~h~~-~~ 422 (1395)
. ... ......+..+...+.. .|+++|..+++.+..+ +.|.+||+.++. ....+..|.. ..
T Consensus 272 ~--~~~-----------~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 272 G--ITG-----------ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp S--SCS-----------SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred c--cCC-----------ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 0 000 0013444456666655 4888884444444333 369999998874 3455555543 26
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
+..++|+ +++.++++.. .|+. |.+||+.++ +++..+..+...+ ..+.+++++
T Consensus 338 ~~~~~~~----~~~~lv~~~~-~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v---------~~~~~s~d~ 391 (710)
T 2xdw_A 338 LEWVACV----RSNFLVLCYL-HDVKNTLQLHDLATG------------ALLKIFPLEVGSV---------VGYSGQKKD 391 (710)
T ss_dssp EEEEEEE----TTTEEEEEEE-ETTEEEEEEEETTTC------------CEEEEECCCSSEE---------EEEECCTTC
T ss_pred EEEEEEE----cCCEEEEEEE-ECCEEEEEEEECCCC------------CEEEecCCCCceE---------EEEecCCCC
Confidence 8889998 6666666654 7875 556676566 6677777653322 246778888
Q ss_pred CEEEEE-e---CCCeEEEEEcCCCC
Q 039790 501 LFLLAN-A---KKNAIYAIHMDYGP 521 (1395)
Q Consensus 501 ~~LaSg-s---~Dg~I~iWdl~~g~ 521 (1395)
..|+.. + ..+.|++||+.+++
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 765533 2 35789999998764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=143.00 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=154.1
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEecc------CCCCeEEEEEeeCCCCEEEEEEC--CCc
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRG------HTQRVTDMAFFAEDVHLLASASV--DGR 281 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~------H~~~V~slaf~s~dg~~LaSgs~--Dgt 281 (1395)
.++|++||++|+++. .++.|.+||..+.. ...+.. +......++| +++|++|+++.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~-spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ-TTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE-CTTSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE-CCCCCEEEEECCCCCCe
Confidence 789999999999886 36789999998864 334332 2345778999 999999998874 689
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.+||+.+++ .+.. +.... ...+.+.|++ ..+++.+.++.+..|.....++....
T Consensus 133 v~v~d~~~~~--------------~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~------- 189 (361)
T 2oiz_A 133 IGIVDVAKGD--------------YVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ------- 189 (361)
T ss_dssp EEEEETTTTE--------------EEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-------
T ss_pred EEEEECCCCc--------------EEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-------
Confidence 9999999876 1222 22111 1124556665 34555556666666654332221000
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCC------CC---CCeeEEEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPY------DG---HPVNCVTF 428 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h------~~---~~V~sV~f 428 (1395)
......+..+...+ .+.+++++ ..++..+.++.|.+||+..+. .+..+... .+ .....++|
T Consensus 190 ------~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 190 ------SRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp ------EECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred ------ccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 00000111112221 23346776 566667789999999987653 22222211 11 01233789
Q ss_pred eecCCCCCcEEEEEecC----------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 429 LIGPHPQHIVLITGGPL----------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~----------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+ +++.++++++.. +++|.+||+.++ +.+.++..+. .. .++|++
T Consensus 262 ~----~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~------------~~v~~i~~~~--p~---------~ia~sp 314 (361)
T 2oiz_A 262 H----RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK------------QRVARIPGRD--AL---------SMTIDQ 314 (361)
T ss_dssp E----TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT------------EEEEEEECTT--CC---------EEEEET
T ss_pred e----cCCCeEEEEEccCCCcccccCCCceEEEEECCCC------------cEEEEEecCC--ee---------EEEECC
Confidence 8 998888776531 348999999988 8999998765 22 599999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 039790 499 AGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||++|+++.. +.|++||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 9999998886 99999999876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=133.72 Aligned_cols=240 Identities=9% Similarity=0.077 Sum_probs=161.5
Q ss_pred eCCCCCEEEEEEecCCCEEEE-------EEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCC-CCEEEEEECC
Q 039790 213 ISDPGLVLGRQIAVNRNYICY-------GLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAED-VHLLASASVD 279 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~Las-------Gs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~d-g~~LaSgs~D 279 (1395)
........+++|+++|+++++ +..++.|.+||..++....+.. +...+.+++| .++ ++++++.. +
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC-DRDANQLFVADM-R 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE-CSSSSEEEEEET-T
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEE-ecCCCcEEEEEC-C
Confidence 444556789999999988887 6778999999988886554443 5678999999 777 66555444 4
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEE-ec----CCCCCccEEEEeCCCCeEEEEEeC----------------CeE
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQI-LA----DGDSVHPRVCWHPHKQEILMLAIG----------------NRI 338 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~----~~~~~v~~v~~sp~~~~lla~g~~----------------~~i 338 (1395)
+.|.+||.. ++. ..+ .. .....+..+++++++. ++++... +.+
T Consensus 92 ~~l~~~d~~-g~~--------------~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 92 LGLLVVQTD-GTF--------------EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp TEEEEEETT-SCE--------------EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCEEEEeCC-CCE--------------EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeE
Confidence 579999988 651 111 11 1123467899999886 4444433 356
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe----cCCCcEEEEEeCCCcEEEEeCC-CCc---
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC----QWLTTRLASASLDGTVKIWDDR-KST--- 410 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs----pdg~~~LaSgs~Dg~IrIWDl~-sg~--- 410 (1395)
.+++.. +. ...+..+......++|+ +++..++++...++.|.+||+. .+.
T Consensus 156 ~~~~~~--g~--------------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 156 YCFTTD--GQ--------------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp EEECTT--SC--------------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred EEECCC--CC--------------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 655532 11 12222234457889999 9883344555678999999976 453
Q ss_pred --eeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 411 --PLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 411 --~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
.+..+.++. + .+..++++ ++|.++++.. .++.|.+||..++ +.+..+..+...+
T Consensus 214 ~~~~~~~~~~~~~-~p~~i~~d----~~G~l~v~~~-~~~~i~~~d~~~g------------~~~~~~~~~~~~~----- 270 (314)
T 1pjx_A 214 KKVWGHIPGTHEG-GADGMDFD----EDNNLLVANW-GSSHIEVFGPDGG------------QPKMRIRCPFEKP----- 270 (314)
T ss_dssp EEEEEECCCCSSC-EEEEEEEB----TTCCEEEEEE-TTTEEEEECTTCB------------SCSEEEECSSSCE-----
T ss_pred ceEEEECCCCCCC-CCCceEEC----CCCCEEEEEc-CCCEEEEEcCCCC------------cEeEEEeCCCCCc-----
Confidence 233444443 4 68899998 8998877755 6889999998766 5555565443222
Q ss_pred cccceEEEEeCCCC-EEEEEeCCCeEEEEEcCC
Q 039790 488 AFFNQVVALNRAGL-FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~ 519 (1395)
..++++++|. +++++..++.|+.|++..
T Consensus 271 ----~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 271 ----SNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----eeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 3588899999 555666778999999865
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-09 Score=134.38 Aligned_cols=251 Identities=8% Similarity=0.065 Sum_probs=165.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC--CC-ceEEeccCCCCeEEEEEee----CCCCEEEEEEC-CCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII--TA-LRSLLRGHTQRVTDMAFFA----EDVHLLASASV-DGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~--~~-~~~~l~~H~~~V~slaf~s----~dg~~LaSgs~-DgtV~IWdl~ 288 (1395)
..+.++.|++||+++++++.|+.|.+||+. ++ .+..+... .....++| + +||+++++++. +++|.|||..
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEE-ccccCCCCCEEEEEEccCCeEEEEECC
Confidence 356789999999999999999999999995 54 34444432 24678999 6 69988777665 5899999988
Q ss_pred CCCCCCCCcccccceEEEEEEecC--------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILAD--------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~--------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+.+ .+..+.+.+. .+..+..+..++++..+++... .+.+.+++.......
T Consensus 275 t~~-----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~---------- 333 (567)
T 1qks_A 275 TLE-----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---------- 333 (567)
T ss_dssp TCC-----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE----------
T ss_pred CCc-----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc----------
Confidence 766 2222222110 0224456777777665554443 466777765432110
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-----CCCCCeeEEE-EeecCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-----YDGHPVNCVT-FLIGPH 433 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-----h~~~~V~sV~-fs~~~~ 433 (1395)
.+..+ .......++.|+++|..+++++..++.|.+||+.+++.+..+.. |-+ ..+. +.
T Consensus 334 --------~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg---~g~~~~~---- 397 (567)
T 1qks_A 334 --------KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG---RGANFVH---- 397 (567)
T ss_dssp --------EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT---TCEEEEE----
T ss_pred --------eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc---cceeeEC----
Confidence 01222 24456788999999944445555789999999999988877654 322 2333 44
Q ss_pred CCCcEEE-EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC----
Q 039790 434 PQHIVLI-TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---- 508 (1395)
Q Consensus 434 pdg~~L~-s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---- 508 (1395)
|++..+. ++.-.+++|.+||..+.. .....|+.++++....... + .+..+|++++|.....
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~-----~~~~~~kvv~~i~~~g~g~------~---~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGGGS------L---FIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCSCC------C---CEECCTTCSEEEEECTTCSS
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCC-----CccccCEEEEEEecCCCCC------E---EEEeCCCCCeEEEecCCCCC
Confidence 7755444 433246899999998741 0123478999998754221 1 2678899998887663
Q ss_pred ---CCeEEEEEcCCC
Q 039790 509 ---KNAIYAIHMDYG 520 (1395)
Q Consensus 509 ---Dg~I~iWdl~~g 520 (1395)
.+.|.++|+.+.
T Consensus 464 ~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 464 AEISGSVAVFDIKAM 478 (567)
T ss_dssp HHHHTCEEEEEGGGC
T ss_pred cccCceEEEEECCcc
Confidence 358999999864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-11 Score=139.82 Aligned_cols=222 Identities=10% Similarity=0.084 Sum_probs=142.4
Q ss_pred CCEEEEEEecCCCEEEEEE---------cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---C--cE
Q 039790 217 GLVLGRQIAVNRNYICYGL---------KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---G--RF 282 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs---------~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---g--tV 282 (1395)
..+....| ||++|++.. .++.|.+||+.++....+ ..+..++| ++||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~-SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRI-SPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEE-CTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEE-CCCCCEEEEEEeccCCCcceE
Confidence 45667777 899888753 267899999999876555 56889999 9999999988764 2 38
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---------------------------
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--------------------------- 335 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--------------------------- 335 (1395)
++||+.+++ ...+.... . +..+.|+|++..|+.++.+
T Consensus 88 ~~~~~~~g~--------------~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 88 WVADLETLS--------------SKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp EEEETTTTE--------------EEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred EEEECCCCc--------------eEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 888888765 12222222 2 7789999999988887753
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEeCCC
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-------TVKIWDDRK 408 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-------~IrIWDl~s 408 (1395)
..+.+|+... +. .+..+.. . .+..++|+||| ++++++.++ ...||.+.+
T Consensus 152 ~~l~~~d~~~-~~-------------------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 152 TTFWIFDTES-EE-------------------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp EEEEEEETTT-TE-------------------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred ceEEEEECCC-Ce-------------------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC
Confidence 2233333211 10 0123333 3 78899999997 666666542 344554445
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC-------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN-------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D-------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
++ +..+..+ . .+.++ + |||++|+.++..+ ..|.+|| ++ ++...+..+...
T Consensus 208 ~~-~~~l~~~-~-~~~~~--s----pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~------------~~~~l~~~~~~~ 264 (347)
T 2gop_A 208 GK-EEKMFEK-V-SFYAV--D----SDGERILLYGKPEKKYMSEHNKLYIYD--GK------------EVMGILDEVDRG 264 (347)
T ss_dssp TE-EEEEEEE-E-SEEEE--E----ECSSCEEEEECCSSSCCCSSCEEEEEC--SS------------CEEESSTTCCSE
T ss_pred Cc-eEEeccC-c-ceeeE--C----CCCCEEEEEEccccCCccccceEEEEC--CC------------ceEeccccCCcc
Confidence 54 3444444 4 56555 7 8999988766322 4677887 44 332222222211
Q ss_pred cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 482 ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+...+.|+ || ++++++.++.++|| +..
T Consensus 265 --------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 265 --------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp --------EEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred --------cCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 11137788 88 88999999999999 874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-11 Score=134.39 Aligned_cols=238 Identities=9% Similarity=-0.001 Sum_probs=157.8
Q ss_pred CEEEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYIC-YGLKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 218 ~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
...+++++++|++++ +...++.|.+||..++....+ ..+...+.+|+| .++++++++.. ++.|++||...+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~-~~~i~~~d~~~~~~--- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAV-DGAGTVYVTDF-NNRVVTLAAGSNNQ--- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEE-CTTCCEEEEET-TTEEEEECTTCSCC---
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEE-CCCCCEEEEcC-CCEEEEEeCCCceE---
Confidence 678999999999777 447789999999877654333 234457889999 78888766666 88999999876541
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
..+..........+++++++. ++++. .++.+.+|+...... ......
T Consensus 100 -----------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~--------------------~~~~~~ 147 (270)
T 1rwi_B 100 -----------TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ--------------------TVLPFT 147 (270)
T ss_dssp -----------EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC--------------------EECCCC
T ss_pred -----------eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee--------------------Eeeccc
Confidence 011112224567899999886 55554 456777774322110 011112
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
....+.+++++++| +++++...++.|.+||...+........+.. .+.+|+++ ++|..+++ ...++.|.+||.
T Consensus 148 ~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d----~~g~l~v~-~~~~~~v~~~~~ 220 (270)
T 1rwi_B 148 GLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVD----EAGTVYVT-EHNTNQVVKLLA 220 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEEC----TTCCEEEE-ETTTSCEEEECT
T ss_pred cCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEEC----CCCCEEEE-ECCCCcEEEEcC
Confidence 23467889999988 7777777789999999877665443333333 78999998 88866665 447889999998
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
... .... +.... . .....++++++|.++++...++.|++|++...
T Consensus 221 ~~~------------~~~~-~~~~~-~-------~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 221 GST------------TSTV-LPFTG-L-------NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TCS------------CCEE-CCCCS-C-------SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCC------------ccee-eccCC-C-------CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 654 2111 11110 0 11235889999999999999999999998653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-11 Score=137.88 Aligned_cols=221 Identities=11% Similarity=0.086 Sum_probs=143.5
Q ss_pred CCEEEEEEecCCCEEEEEEcC---C--eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC------------
Q 039790 217 GLVLGRQIAVNRNYICYGLKL---G--NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD------------ 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~D---G--~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D------------ 279 (1395)
..+.++.|+|||++|++++.+ + .|.+||+.++....+..+.. +.+++| ++||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~w-spdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEW-NEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEE-CTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeE-CCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457789999999999988754 3 48888988887655555555 999999 9999998888743
Q ss_pred ---------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC--------
Q 039790 280 ---------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-------- 336 (1395)
Q Consensus 280 ---------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-------- 336 (1395)
..|++||+.+++ .+..+.. . .+..+.|+|++ .++++..++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-----------~~~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE-----------VIEEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE-----------EEEEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCC
T ss_pred cceeecCcccccCccceEEEEECCCCe-----------EEeeecC----C-CcccccCCCCe-EEEEEeccccccccccc
Confidence 579999998765 1112222 2 67789999999 444443321
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEeCC
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD--------GTVKIWDDR 407 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D--------g~IrIWDl~ 407 (1395)
.+..++ .+. ...+..+ ..+..+ +||| ++|+.++.+ ..|.+||
T Consensus 200 ~~l~~~d---~~~--------------------~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-- 250 (347)
T 2gop_A 200 WDIYIWE---DGK--------------------EEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-- 250 (347)
T ss_dssp EEEEEEE---TTE--------------------EEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--
T ss_pred ccEEEeC---CCc--------------------eEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--
Confidence 233333 111 2223334 455554 9998 677766644 3688888
Q ss_pred CCceeEEecCCCCCCeeE-EEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc
Q 039790 408 KSTPLAVLRPYDGHPVNC-VTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 408 sg~~l~tl~~h~~~~V~s-V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
+++....+.+|.. .+.. +.|+ || ++++++ .++.++|| +.++ +....+. +...+
T Consensus 251 ~~~~~~l~~~~~~-~~~~~~~~s-----dg-~~~~~~-~~~~~~l~-~~~g------------~~~~~~~-~~~~v---- 304 (347)
T 2gop_A 251 GKEVMGILDEVDR-GVGQAKIKD-----GK-VYFTLF-EEGSVNLY-IWDG------------EIKPIAK-GRHWI---- 304 (347)
T ss_dssp SSCEEESSTTCCS-EEEEEEEET-----TE-EEEEEE-ETTEEEEE-EESS------------SEEEEEC-SSSEE----
T ss_pred CCceEeccccCCc-ccCCccEEc-----Cc-EEEEEe-cCCcEEEE-EcCC------------ceEEEec-CCCeE----
Confidence 6665544555555 7886 8884 66 666655 89999999 8754 4433332 22222
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeE-EEEEcC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAI-YAIHMD 518 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I-~iWdl~ 518 (1395)
..+.|++ .++++++.++.. .||.++
T Consensus 305 -----~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 -----MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -----EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -----EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 2477888 566666666654 777775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=158.15 Aligned_cols=246 Identities=8% Similarity=-0.003 Sum_probs=159.9
Q ss_pred CCCCCEEEEEEecCCCEEEEEE-----cCCeEEEEECCCCceEEeccCCCCe--EEEEEeeCCCCEEEEEECCCc-----
Q 039790 214 SDPGLVLGRQIAVNRNYICYGL-----KLGNIRILNIITALRSLLRGHTQRV--TDMAFFAEDVHLLASASVDGR----- 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs-----~DG~IrIWd~~~~~~~~l~~H~~~V--~slaf~s~dg~~LaSgs~Dgt----- 281 (1395)
+|...+.+++|||||++||++. .+..|++||+.++.... ..+...+ ..++| ++||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~w-spDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKW-TPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEE-CTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEE-ecCCCEEEEEEecCCCCCcc
Confidence 4555788999999999999553 34689999999986531 1122223 68999 999999999999876
Q ss_pred --------EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCcc
Q 039790 282 --------FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKG 349 (1395)
Q Consensus 282 --------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~ 349 (1395)
|++|++.++.... ..+.....+...+..+.|+|+|..+++++.++ .+.+++. ..+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~----------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~-~~~~- 263 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKD----------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP-GEKD- 263 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGC----------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT-TCSS-
T ss_pred ccCCCCCEEEEEECCCCchhc----------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC-CCCc-
Confidence 9999998875110 01111122335677899999999888887665 3333321 1111
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCce--eEEecCCC-CCCe
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---LDGTVKIWDDRKSTP--LAVLRPYD-GHPV 423 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg~~--l~tl~~h~-~~~V 423 (1395)
...+..+...+....| ++|. +++.+. .++.|.+||+.++.. ...+..|. ...+
T Consensus 264 -------------------~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 264 -------------------FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp -------------------CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred -------------------eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 2334445566666666 6774 555554 258899999988753 34444332 3368
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccC-cccccccccccceEEEEeCCCC
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
..++|+ ++.++++.. .|+..+||.+. .+ ..+..+..+. ..+ ..+.+++++.
T Consensus 323 ~~~~~~-----~~~lv~~~~-~dg~~~l~~~~~~g------------~~~~~l~~~~~~~v---------~~~~~s~d~~ 375 (695)
T 2bkl_A 323 LSVSIV-----GGHLSLEYL-KDATSEVRVATLKG------------KPVRTVQLPGVGAA---------SNLMGLEDLD 375 (695)
T ss_dssp EEEEEE-----TTEEEEEEE-ETTEEEEEEEETTC------------CEEEECCCSSSSEE---------CCCBSCTTCS
T ss_pred EEEEEE-----CCEEEEEEE-ECCEEEEEEEeCCC------------CeeEEecCCCCeEE---------EEeecCCCCC
Confidence 889996 455666544 89999988765 23 4555555442 211 1356678887
Q ss_pred EEEEEe----CCCeEEEEEcCCCC
Q 039790 502 FLLANA----KKNAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSgs----~Dg~I~iWdl~~g~ 521 (1395)
.|+... ..++|++||+.+++
T Consensus 376 ~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 376 DAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 666332 35789999998764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=135.49 Aligned_cols=202 Identities=15% Similarity=0.087 Sum_probs=143.5
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEe---------ccCCCCeEEEEEeeC-CCCEEEEEE-CCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLL---------RGHTQRVTDMAFFAE-DVHLLASAS-VDG 280 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l---------~~H~~~V~slaf~s~-dg~~LaSgs-~Dg 280 (1395)
++.....+++|+++|+++++...++.|++||.... .+..+ .++-....+|+| .+ ++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~-~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV-EPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE-CTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE-eCCCCeEEEEeCCCCC
Confidence 34567899999999998888888999999998776 44544 345567999999 77 888888886 699
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERF 352 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~ 352 (1395)
.|++|| .++. .+..+...+. .-.....++++++++.++++...+ .|.+|+.. .++.
T Consensus 167 ~I~~~~-~~g~-----------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~-~G~~--- 230 (329)
T 3fvz_A 167 RIVQFS-PSGK-----------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD-TKEF--- 230 (329)
T ss_dssp EEEEEC-TTSC-----------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT-TCCE---
T ss_pred eEEEEc-CCCC-----------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC-CCcE---
Confidence 999999 4454 1222211111 112356899999967777777654 56666543 2221
Q ss_pred cCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEE-------eCCCcEEEEeCCCCceeEEec---CCCC
Q 039790 353 SAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASA-------SLDGTVKIWDDRKSTPLAVLR---PYDG 420 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSg-------s~Dg~IrIWDl~sg~~l~tl~---~h~~ 420 (1395)
+..+ ..+...+..++|+| + ..+++. +.+.+|++||..+++.+..+. ++..
T Consensus 231 ----------------~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 231 ----------------VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD 292 (329)
T ss_dssp ----------------EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS
T ss_pred ----------------EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC
Confidence 2223 34667889999999 4 344443 334589999999999999884 5555
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.+..|+|+ ++|..+++ ...++.|++|++..
T Consensus 293 -~p~~ia~~----~dG~lyva-d~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 293 -MPHDIVAS----EDGTVYIG-DAHTNTVWKFTLTE 322 (329)
T ss_dssp -SEEEEEEC----TTSEEEEE-ESSSCCEEEEEEEE
T ss_pred -CeeEEEEC----CCCCEEEE-ECCCCEEEEEeCCc
Confidence 79999999 99955555 55899999999754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-10 Score=130.16 Aligned_cols=197 Identities=9% Similarity=0.063 Sum_probs=140.2
Q ss_pred CCCCEEEEEEe-cCCCEEEEEEc-CCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIA-VNRNYICYGLK-LGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~S-pdg~~LasGs~-DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|...+.++++. ++++++++... ++.|++||.....+..+. .+...+.+|+| .++++++++...++.|++||.. +.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEE-eCCCCEEEEECCCCEEEEEcCC-CC
Confidence 44678899995 67776666643 899999996554555453 34567899999 8899988888888999999964 33
Q ss_pred CCCCCcccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 292 DEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.+..+. .+......+++++++. ++++. .++.|.+|+... ..
T Consensus 153 --------------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~------------------- 196 (286)
T 1q7f_A 153 --------------VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG--QY------------------- 196 (286)
T ss_dssp --------------EEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC--CE-------------------
T ss_pred --------------EEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC--CE-------------------
Confidence 112222 2334567899999886 55554 467787777521 10
Q ss_pred eEEEcc--cCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec
Q 039790 369 VQLVGK--HDGEITELSMCQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 369 ~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+.. +...+..|+++++| +++++...++ .|++||. +++.+..+..+.. ..+.+++|+ ++|+++++ +
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~----~~g~l~vs-~- 268 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM----DDGSVVLA-S- 268 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE----TTTEEEEE-E-
T ss_pred EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC----CCCcEEEE-C-
Confidence 233332 33678999999998 7888888776 9999994 6777777765542 147899999 99986666 5
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|++|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 6999999998653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-09 Score=135.93 Aligned_cols=325 Identities=10% Similarity=0.040 Sum_probs=201.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC--CCCCCCCCcccccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT--EGPDEEDKPQILGK 302 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~--tg~~~~~~~~~~~~ 302 (1395)
+.+.++++...++.|.+||..++.+. .+. ....+..+.| ++||++|++++.|+.|.+||+. +++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~-SpDGr~lyv~~~dg~V~viD~~~~t~~----------- 231 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRL-SASGRYLFVIGRDGKVNMIDLWMKEPT----------- 231 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCC-----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEE-CCCCCEEEEEcCCCeEEEEECCCCCCc-----------
Confidence 44556677778999999999998544 443 3446789999 9999999999999999999996 544
Q ss_pred eEEEEEEecCCCCCccEEEEe----CCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEc----
Q 039790 303 IVVAIQILADGDSVHPRVCWH----PHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG---- 373 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~s----p~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~---- 373 (1395)
.+..+ .. ......++|+ |++++++++... +.+.++|...... +..+.
T Consensus 232 ~v~~i---~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--------------------~~~i~~~~~ 287 (567)
T 1qks_A 232 TVAEI---KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--------------------KKIQSTRGM 287 (567)
T ss_dssp EEEEE---EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE--------------------EEEEECCEE
T ss_pred EeEEE---ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE--------------------EEEEecccc
Confidence 22222 22 2234578999 699988888775 6666666433211 11111
Q ss_pred ------ccCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 374 ------KHDG-EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 374 ------~h~~-~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.|.. .+..+.++++++.++++...+|.|.++|......+....-..+.....+.|+ |+|++++++...+
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~----pdgr~~~va~~~s 363 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD----GSHRYFITAANAR 363 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC----TTSCEEEEEEGGG
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC----CCCCEEEEEeCCC
Confidence 1223 6788999998867777777889999999887643332221122367889999 9999998877678
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCC-CCEEEEEe-CCCeEEEEEcCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRA-GLFLLANA-KKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs-~Dg~I~iWdl~~g~~~ 523 (1395)
+.|.+||+.++ +.+..+.. .... +.... ...++++ |.+++++. .++.|.+|+...+...
T Consensus 364 n~V~ViD~~t~------------kl~~~i~vgg~~P----hpg~g--~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 364 NKLVVIDTKEG------------KLVAIEDTGGQTP----HPGRG--ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp TEEEEEETTTT------------EEEEEEECSSSSB----CCTTC--EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred CeEEEEECCCC------------cEEEEEeccCcCC----CCccc--eeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 99999999988 77777654 2111 10000 1235777 44444443 5689999998864321
Q ss_pred CCcceeeeeeeecc--ccE-EEEecCCCCcC-------cC--CCCeEEEEEcCCCce-------eeec----------cc
Q 039790 524 ASTRMDYIAEFTVT--MPI-LSLTGTTTDAS-------PD--GEHIVQIYCVQTQAI-------QQYA----------LD 574 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~--~~i-ls~~~~~~d~~-------~s--~dg~V~lWdv~t~~i-------~~~~----------~~ 574 (1395)
. ..++.+...... .+. +.+...+ ..+ ++ ....|.|||+.+.++ .... ..
T Consensus 426 ~-~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 426 D-NAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp T-TBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred c-ccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence 1 112233333221 111 1111111 000 11 135899999998721 1111 12
Q ss_pred ceEEecCCCCC--eecc---c-CCCceEEEeecCCCCcceeec
Q 039790 575 LSQCLPPPLEN--AELE---K-TDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 575 ~~~cl~~s~d~--l~~~---~-sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
....+.+++++ +-++ + .+.+.+.++|..|++..+.+.
T Consensus 504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 34566677765 2222 1 133444589999999877777
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-09 Score=118.94 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=163.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.+...+.++++.++|+++++...++.|.+||.. +....+. .+...+.+|++ .+++.++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTI-SSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEE-CCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 455789999999999977776668999999998 6544332 35578999999 7889888887778899999976 33
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
+..+. .......+..+++++++. ++++. .++.+.+++. . +... ..
T Consensus 89 ------------~~~~~-~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~------------------~~ 134 (299)
T 2z2n_A 89 ------------IKEYT-LPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIR------------------EY 134 (299)
T ss_dssp ------------EEEEE-CSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEE------------------EE
T ss_pred ------------EEEEe-CCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEE------------------Ee
Confidence 01111 122344567889998875 44444 4667777765 1 1110 11
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
....+...+.++++.++| +++++...++.|.+||. +++.... +..+.. .+.++++. ++|..+++.. .++.|
T Consensus 135 ~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~----~~g~l~v~~~-~~~~i 206 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPAS-GPVGITKG----NDDALWFVEI-IGNKI 206 (299)
T ss_dssp ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----TTSSEEEEET-TTTEE
T ss_pred cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCC-cceeEEEC----CCCCEEEEcc-CCceE
Confidence 122244578999999998 77777777889999998 7765443 333333 68999998 8888766643 68899
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+||. ++ .. ..+...... .....++++++|.++++...++.|+.|+.
T Consensus 207 ~~~~~-~g------------~~-~~~~~~~~~-------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 207 GRITT-SG------------EI-TEFKIPTPN-------ARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECT-TC------------CE-EEEECSSTT-------CCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEECC-CC------------cE-EEEECCCCC-------CCceeEEECCCCCEEEeccCCceEEEECC
Confidence 99998 55 32 223222110 11235888999998888778899999997
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=129.67 Aligned_cols=281 Identities=9% Similarity=0.000 Sum_probs=167.9
Q ss_pred CCCEEEEEE------cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEEC----------CCcEEEEECCC
Q 039790 227 NRNYICYGL------KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASV----------DGRFFIWNITE 289 (1395)
Q Consensus 227 dg~~LasGs------~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~----------DgtV~IWdl~t 289 (1395)
+++++++.. .|+.|++||..++. +..+..+..+ .++| ++|+++|++++. +++|.+||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~-spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQV-SNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEE-CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEE-CCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 455555543 37899999998875 4455555554 8999 999999998873 67899999987
Q ss_pred CCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
++ .+..+.+... +......++|+|++++++++..+ +.+.+||.... +.
T Consensus 91 ~~-----------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~--------------- 143 (361)
T 2oiz_A 91 LT-----------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DY--------------- 143 (361)
T ss_dssp CC-----------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EE---------------
T ss_pred Cc-----------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cE---------------
Confidence 76 2333333211 22446679999999999888764 56777765432 10
Q ss_pred cccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEE------ecCCCCCCeeEEEEeecCCCCC
Q 039790 365 LINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAV------LRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 365 ~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~t------l~~h~~~~V~sV~fs~~~~pdg 436 (1395)
+.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.... +..+.. + ..+.++ +++
T Consensus 144 ----~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~----~~g 211 (361)
T 2oiz_A 144 ----VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-P-IFIAPA----LDK 211 (361)
T ss_dssp ----EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-C-BCSCCE----ECS
T ss_pred ----EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-c-eEEEec----ccC
Confidence 222 22 22 2234667888767889999999999999865 555422 222222 2 233445 677
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-ccccceEEEEeCCCCEEEEEeC-------
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-DAFFNQVVALNRAGLFLLANAK------- 508 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-~~~~~~~l~~S~dg~~LaSgs~------- 508 (1395)
..++... .++.|.+||+... ....+..+........... ...-...++|++++.+++....
T Consensus 212 ~~~~~~~-~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 212 DKAHFVS-YYGNVYSADFSGD----------EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SEEEEEB-TTSEEEEEECSSS----------SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CEEEEEe-CCCeEEEEEecCC----------CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 7776655 7899999999754 1123333332211000000 0000113788999877665432
Q ss_pred ----CCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEEEecCCCCcC-cCCCCeEEEEEcCCC--cee
Q 039790 509 ----KNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILSLTGTTTDAS-PDGEHIVQIYCVQTQ--AIQ 569 (1395)
Q Consensus 509 ----Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~~-~s~dg~V~lWdv~t~--~i~ 569 (1395)
.+.|++||+.+++ .+..+.... ..+.|+... ..+ ...++.|.|||+.++ ++.
T Consensus 281 ~~~~~~~v~viD~~t~~--------~v~~i~~~~p~~ia~spdg-~~l~v~n~~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQ--------RVARIPGRDALSMTIDQQR-NLMLTLDGGNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTCCCSEEEEEETTTTE--------EEEEEECTTCCEEEEETTT-TEEEEECSSCEEEEECSSSSCEEE
T ss_pred ccCCCceEEEEECCCCc--------EEEEEecCCeeEEEECCCC-CEEEEeCCCeEEEEECCCCcceee
Confidence 3589999987753 233332222 222333322 111 222388999999998 554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=134.86 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=161.3
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
.|.++.|++++..++..+.++.+++| .......+.++...+.+++| .+++++++++..++.|++||..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~i~~~d~~~~~------ 77 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNF-DRQGQLFLLDVFEGNIFKINPETKE------ 77 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEE-CTTSCEEEEETTTCEEEEECTTTCC------
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEE-CCCCCEEEEECCCCEEEEEeCCCCc------
Confidence 45667788888877777788999999 33355667777788899999 7899988888899999999998776
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-----eEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...+.......+..++|++++. +++++..+ .+.+|+.... .. ...+
T Consensus 78 --------~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~-~~-------------------~~~~ 128 (333)
T 2dg1_A 78 --------IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD-NL-------------------QDII 128 (333)
T ss_dssp --------EEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSC-SC-------------------EEEE
T ss_pred --------EEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCC-EE-------------------EEEE
Confidence 1122223456688999999986 55555443 7777765321 10 1111
Q ss_pred c--ccCCCeEEEEEecCCCcEEEEEeC------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 373 G--KHDGEITELSMCQWLTTRLASASL------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 373 ~--~h~~~V~slafspdg~~~LaSgs~------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
. .+...+++++|+++| +++++... .+.|..||..+++...... +.. .+..++|+ ++|++|+.+.+
T Consensus 129 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~i~~~----~dg~~l~v~~~ 201 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS-VANGIALS----TDEKVLWVTET 201 (333)
T ss_dssp CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES-SEEEEEEC----TTSSEEEEEEG
T ss_pred ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC-cccceEEC----CCCCEEEEEeC
Confidence 1 244579999999998 67666553 3567777766555443332 223 68899999 99987766665
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.++.|.+||+.+.. ..+..+...... ..........++++++|.++++...++.|++|+..
T Consensus 202 ~~~~i~~~d~~~~g-----------~~~~~~~~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 202 TANRLHRIALEDDG-----------VTIQPFGATIPY--YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp GGTEEEEEEECTTS-----------SSEEEEEEEEEE--ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCeEEEEEecCCC-----------cCcccccceEEE--ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 78999999996420 111111100000 00000122358999999999988888999999873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-10 Score=142.68 Aligned_cols=200 Identities=8% Similarity=-0.058 Sum_probs=140.6
Q ss_pred EEEEEEecCCCEEEEEEcCCe----------------EEEEECCCCc---eEEecc--CCCCeEEEEEeeCCCCEEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGN----------------IRILNIITAL---RSLLRG--HTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~----------------IrIWd~~~~~---~~~l~~--H~~~V~slaf~s~dg~~LaSgs 277 (1395)
+.+++|+|||+.|++++.++. |++|++.++. ...+.. |...+..+.| ++||++|+.++
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l~~~~ 251 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL-SDDGRYVLLSI 251 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE-CTTSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE-cCCCCEEEEEE
Confidence 567889999999999998876 9999998874 233333 5667889999 99999988877
Q ss_pred C-----CCcEEEEECCC------CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEE
Q 039790 278 V-----DGRFFIWNITE------GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKID 342 (1395)
Q Consensus 278 ~-----DgtV~IWdl~t------g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d 342 (1395)
. +..|++||+.+ +.. .+..+..+...+. ..|+++++.+++.+..+ .+++|+
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~-------------~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGIL-------------KWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSC-------------CCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EccCCCccEEEEEECcccccccCCcc-------------ceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 5 56899999986 420 0111222223332 35888998888887644 477776
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCceeEEecCC
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGT--VKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~--IrIWDl~sg~~l~tl~~h 418 (1395)
....... ....+..|.. .+.+++|++++ .++++...|+. |++||+.+|+.+..+..+
T Consensus 318 ~~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 318 FTDPEES------------------KWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp TTSCCGG------------------GCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred CCCCCcc------------------cceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence 5332100 0123333433 68889999665 78889988985 666787788888888888
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEE 457 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg 457 (1395)
.+ .|..+.++ +++..|+.+.+ ..++|.+||+.++
T Consensus 379 ~~-~v~~~~~s----~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 379 VG-SVVGYSGQ----KKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp SS-EEEEEECC----TTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred Cc-eEEEEecC----CCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 66 88999998 88876664332 3478999999887
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=124.86 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=155.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc-eEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL-RSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.+++|++++.|+.|++||..+|+ +..+..+. ..+.++.+ .++|++|+ +.++.|+.||. +|+ .+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~-~pdG~ilv--s~~~~V~~~d~-~G~-----------~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA-TKAGEILF--SYSKGAKMITR-DGR-----------EL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEE-CTTSCEEE--ECBSEEEEECT-TSC-----------EE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEE-CCCCCEEE--eCCCCEEEECC-CCC-----------EE
Confidence 46789999999999999998885 55666665 47899999 89999988 45778999998 676 22
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
..+. ......+.++.+.+++..+++.+. .+.++.++. .++. . |...... ...++......++
T Consensus 69 W~~~--~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~-l-----------~~~~~~~-~~~~~~~~~~~v~ 131 (276)
T 3no2_A 69 WNIA--APAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEV-L-----------SKTEFET-GIERPHAQFRQIN 131 (276)
T ss_dssp EEEE--CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCE-E-----------EEEEECC-SCSSGGGSCSCCE
T ss_pred EEEc--CCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCE-E-----------EEEeccC-CCCcccccccCce
Confidence 2222 122245667888999987776665 555655543 2221 0 0000000 0011223455667
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+.++| ++|++...++.|.+||.. |+.+.++..+. .+.++.+. ++|..+++++ .++.|..||..++
T Consensus 132 ~~~~G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~----~~g~~~v~~~-~~~~v~~~d~~tG------ 196 (276)
T 3no2_A 132 KNKKG-NYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFL----DNGDCLVACG-DAHCFVQLNLESN------ 196 (276)
T ss_dssp ECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCEEEEC----TTSCEEEECB-TTSEEEEECTTTC------
T ss_pred ECCCC-CEEEEecCCCEEEEECCC-CCEEEEEECCC--CccceeEc----CCCCEEEEeC-CCCeEEEEeCcCC------
Confidence 88888 899999999999999987 99999998763 57788887 8999888755 7789999999888
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+.+.++....... .. -.+...+...++|.++++..
T Consensus 197 ------~~~w~~~~~~~~~--~~-l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 197 ------RIVRRVNANDIEG--VQ-LFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ------CEEEEEEGGGSBS--CC-CSEEEEEEECTTSCEEEEEE
T ss_pred ------cEEEEecCCCCCC--cc-ccccccceEcCCCCEEEEec
Confidence 7777776432110 01 12234577788999888874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-09 Score=128.56 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=166.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEE 294 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~ 294 (1395)
....+++|+++|+++++...++.|++||..++.+..+........ ++| .+++++|+.+..++ .|++|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~-~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAV-TKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEE-CTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeE-ecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 568899999999988887778999999999887655544334444 999 89999999988876 788888876541
Q ss_pred CCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...+..... .......++++++++.++++..++.+.+|+..... ...+. ... ..
T Consensus 207 ---------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~--------------~~~-~~ 261 (409)
T 3hrp_A 207 ---------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIK--------------QLE-LS 261 (409)
T ss_dssp ---------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEE--------------ECC-CC
T ss_pred ---------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEe--------------ccc-cc
Confidence 111111112 34556789999977778886666678888764321 00000 000 11
Q ss_pred ccCCCe--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC--------------CCCeeEEEEeecCCCCCc
Q 039790 374 KHDGEI--TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD--------------GHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 374 ~h~~~V--~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~--------------~~~V~sV~fs~~~~pdg~ 437 (1395)
++...- ..++|+|+++.++++-..+++|+.||.... +..+.++. -.....++|+ ++|.
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d----~dG~ 335 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD----EDGN 335 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC----TTCC
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe----CCCC
Confidence 122222 289999965477777778899999997543 34443332 0158899998 9998
Q ss_pred EEEEEec-CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-----cc-ccccceEEEEeCCCCEEEEEeCCC
Q 039790 438 VLITGGP-LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-----LE-DAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 438 ~L~s~Gs-~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-----~~-~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
+++ +.. .++.|+.||+.++ . +.++.++...... .. .-.....++++++|.++++...++
T Consensus 336 lyv-ad~~~~~~I~~~~~~~G------------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 336 FYI-VDGFKGYCLRKLDILDG------------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp EEE-EETTTTCEEEEEETTTT------------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred EEE-EeCCCCCEEEEEECCCC------------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 554 466 7899999998765 3 3444443110000 00 001234689999999999999999
Q ss_pred eEEEEEcC
Q 039790 511 AIYAIHMD 518 (1395)
Q Consensus 511 ~I~iWdl~ 518 (1395)
.|+.++++
T Consensus 402 ~Ir~i~~e 409 (409)
T 3hrp_A 402 AIRKYAVE 409 (409)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99888763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-10 Score=144.11 Aligned_cols=233 Identities=12% Similarity=0.035 Sum_probs=147.0
Q ss_pred EecCCCEEEEEEcCC---eEEEE--ECCCCceEEe-------ccCCCCeEEEEEeeCCCCEEE-----EEECCCcEEEEE
Q 039790 224 IAVNRNYICYGLKLG---NIRIL--NIITALRSLL-------RGHTQRVTDMAFFAEDVHLLA-----SASVDGRFFIWN 286 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG---~IrIW--d~~~~~~~~l-------~~H~~~V~slaf~s~dg~~La-----Sgs~DgtV~IWd 286 (1395)
.+++|+++++...++ .-.|| +..++....+ .+|...+.+++| ++||++|+ +|+.+.+|++||
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~-SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAV-SWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEE-CTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEE-CCCCCEEEEEECCCCCceEEEEEEE
Confidence 358999999887654 23444 4445543333 246667999999 89999998 455567899999
Q ss_pred CCCCCCC-CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe-------------EEEEEcCCCCccccc
Q 039790 287 ITEGPDE-EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR-------------ILKIDSNRVGKGERF 352 (1395)
Q Consensus 287 l~tg~~~-~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~-------------ii~~d~~~~~~~~~~ 352 (1395)
+.+++.. .. ... ......++|+|++..|+.+..+.. +.+|+.......
T Consensus 154 l~tg~~~~~~-------------~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--- 215 (695)
T 2bkl_A 154 VDSGEWSKVD-------------VIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--- 215 (695)
T ss_dssp TTTCCBCSSC-------------CBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---
T ss_pred CCCCCCcCCc-------------ccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---
Confidence 9998722 00 001 111257899999998888877554 666655322110
Q ss_pred cCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 353 SAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG----TVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
...++ ..|...+..+.|+||| ++|+.++.++ .|++||..++. ...+..+.. .+...
T Consensus 216 ---------------~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~~ 277 (695)
T 2bkl_A 216 ---------------DTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG-AKYEV 277 (695)
T ss_dssp ---------------CEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS-CCEEE
T ss_pred ---------------ceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC-ceEEE
Confidence 01222 2355688999999999 6777666655 67777766554 444555554 56677
Q ss_pred EEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC-cccccccccccceEEEEeCCCCE
Q 039790 427 TFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
.|. +|. |+..+. .++.|.+||+.+++. ..| ..+..+. .. ....+.++ ++.+
T Consensus 278 ~~~-----~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~---~~l~~~~~~~--------~l~~~~~~-~~~l 332 (695)
T 2bkl_A 278 HAW-----KDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASW---KEIVPEDSSA--------SLLSVSIV-GGHL 332 (695)
T ss_dssp EEE-----TTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGC---EEEECCCSSC--------EEEEEEEE-TTEE
T ss_pred Eec-----CCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCC---eEEecCCCCC--------eEEEEEEE-CCEE
Confidence 774 566 554443 258999999977610 112 2233222 11 11235666 7788
Q ss_pred EEEEeCCCeEEEEEcC
Q 039790 503 LLANAKKNAIYAIHMD 518 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~ 518 (1395)
+++...|+..+||.+.
T Consensus 333 v~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 333 SLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEe
Confidence 8999999998888776
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-09 Score=124.50 Aligned_cols=237 Identities=16% Similarity=0.051 Sum_probs=157.1
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
....++.+. +++++++...++.|.+||..++.. ..+. .......|+| ++++.++++...++.|.+||..+++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~-~~~g~lyv~~~~~~~v~~iD~~t~~---- 116 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF-LSDEKAYVTQIWDYRIFIINPKTYE---- 116 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE-EETTEEEEEEBSCSEEEEEETTTTE----
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE-eCCCeEEEEECCCCeEEEEECCCCe----
Confidence 345666663 344555556679999999998864 5553 4567899999 7778655555589999999999876
Q ss_pred CcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 296 KPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
....+.. +. .......+++ +++.++++.. ++.+.+||...... ..
T Consensus 117 -------~~~~i~~-g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~--------------------~~ 166 (328)
T 3dsm_A 117 -------ITGYIEC-PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV--------------------VD 166 (328)
T ss_dssp -------EEEEEEC-TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE--------------------EE
T ss_pred -------EEEEEEc-CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE--------------------EE
Confidence 1112221 11 0013445666 5667777764 67788887643211 12
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCC----------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLD----------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~D----------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+. .......++++++| ++++++..+ +.|.+||..+++.+..+....+.....++|+ |++++|+
T Consensus 167 ~i~-~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~----~d~~~ly 240 (328)
T 3dsm_A 167 ELT-IGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN----GTRDTLY 240 (328)
T ss_dssp EEE-CSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC----TTSCEEE
T ss_pred EEE-cCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe----cCCCEEE
Confidence 222 12345688999998 666666554 7899999999988877764433378999999 9999988
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEE--EEeccCcccccccccccceEEEEeC-CCCEEEEE----eCCCeEE
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ--TLELKSSAELRLEDAFFNQVVALNR-AGLFLLAN----AKKNAIY 513 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~--tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSg----s~Dg~I~ 513 (1395)
++. +.|.+||..++ +... .+.... .....+++++ +|.++++. ..++.|+
T Consensus 241 v~~---~~v~~~d~~t~------------~~~~~~~~~~~~---------~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 241 WIN---NDIWRMPVEAD------------RVPVRPFLEFRD---------TKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp EES---SSEEEEETTCS------------SCCSSCSBCCCS---------SCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred EEc---cEEEEEECCCC------------ceeeeeeecCCC---------CceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 854 38999999876 2210 001001 1123588998 77788887 6789999
Q ss_pred EEEcCCCC
Q 039790 514 AIHMDYGP 521 (1395)
Q Consensus 514 iWdl~~g~ 521 (1395)
+|+.. |+
T Consensus 297 v~d~~-g~ 303 (328)
T 3dsm_A 297 RYSPQ-GK 303 (328)
T ss_dssp EECTT-CC
T ss_pred EECCC-CC
Confidence 99987 54
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-08 Score=112.47 Aligned_cols=238 Identities=7% Similarity=-0.061 Sum_probs=157.6
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+...+.+++++++|+++++...++.|..||.. +....+ ..+...+.+|++ .+++.++++...++.|.+||. ++..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITE-GPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEE-CCCCCEEEEecCCceEEEECC-CCCE
Confidence 34678999999999988877778899999987 433333 234567999999 788888888777889999998 5541
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ........+..+++++++. ++++.. .+.+.+++. .+... ...
T Consensus 132 ------------~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~--~g~~~------------------~~~ 177 (299)
T 2z2n_A 132 ------------REY-ELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE--SGDIT------------------EFK 177 (299)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT--TCCEE------------------EEE
T ss_pred ------------EEe-cCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC--CCcEE------------------Eee
Confidence 111 1122344567889998885 555544 567777765 22110 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+..+...+.+++++++| +++++...++.|.+||. ++..... +..+.. .+.+++++ ++|..+++. ..++.|.
T Consensus 178 ~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~----~~g~l~v~~-~~~~~i~ 249 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITEFKIPTPNA-RPHAITAG----AGIDLWFTE-WGANKIG 249 (299)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----STTCEEEEE-TTTTEEE
T ss_pred CCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEEEECCCCCC-CceeEEEC----CCCCEEEec-cCCceEE
Confidence 22344568899999998 67777667889999998 6664332 233333 79999998 898866654 3678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+||. ++ . +..+...... .....+++ ++|.++++.. .+.|..++..++
T Consensus 250 ~~d~-~g------------~-~~~~~~~~~~-------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 250 RLTS-NN------------I-IEEYPIQIKS-------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEET-TT------------E-EEEEECSSSS-------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EECC-CC------------c-eEEEeCCCCC-------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9998 33 2 2333322110 11235777 8898888766 567777777653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.8e-10 Score=143.08 Aligned_cols=246 Identities=7% Similarity=-0.033 Sum_probs=152.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC-----CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc--------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL-----GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-------- 281 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D-----G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-------- 281 (1395)
|...+.+++|||||++||+++.+ ..|++||+.++.......+...+..++| ++| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~w-spD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAW-LGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEE-STT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEE-ECC-CEEEEEEecCccccccccc
Confidence 33467889999999999998654 3699999999865443323333467899 899 88888887664
Q ss_pred ------EEEEECCCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCC-----eEEEEEcCCCCc
Q 039790 282 ------FFIWNITEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGN-----RILKIDSNRVGK 348 (1395)
Q Consensus 282 ------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~-----~ii~~d~~~~~~ 348 (1395)
|++|++.++.... ..++.. +...+..+.|+|+|..++.++.++ .+.+|+.... .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~-~ 305 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSAD------------QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG-K 305 (741)
T ss_dssp CCCCCEEEEEETTSCGGGC------------EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT-E
T ss_pred CCCCCEEEEEECCCCchhC------------EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC-C
Confidence 8999997764110 112222 223467899999999888877643 5555554321 0
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCC--ceeEEecCCCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKS--TPLAVLRPYDGHP 422 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg--~~l~tl~~h~~~~ 422 (1395)
. .....+..+...+.... +++| ..|+..+. ++.|.+||+.++ .....+..+.. .
T Consensus 306 ~-----------------~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~ 365 (741)
T 1yr2_A 306 I-----------------GPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-N 365 (741)
T ss_dssp E-----------------CCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-E
T ss_pred C-----------------cccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-e
Confidence 0 00123333444455543 4787 56666654 345999999875 33334444443 6
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
+..+.|+ ++.++++. ..|+..+||.+. ++ ..+..+..+... ....+.+++++.
T Consensus 366 l~~~~~~-----~~~lv~~~-~~dg~~~l~~~~~~g------------~~~~~l~~~~~~--------~v~~~~~s~d~~ 419 (741)
T 1yr2_A 366 LESVGIA-----GNRLFASY-IHDAKSQVLAFDLDG------------KPAGAVSLPGIG--------SASGLSGRPGDR 419 (741)
T ss_dssp EEEEEEE-----BTEEEEEE-EETTEEEEEEEETTS------------CEEEECBCSSSC--------EEEEEECCBTCS
T ss_pred EEEEEEE-----CCEEEEEE-EECCEEEEEEEeCCC------------CceeeccCCCCe--------EEEEeecCCCCC
Confidence 7778885 44455554 489988888664 33 455555543211 112467788887
Q ss_pred EEEEE----eCCCeEEEEEcCCCC
Q 039790 502 FLLAN----AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSg----s~Dg~I~iWdl~~g~ 521 (1395)
.|+.. ...++|++||+.+++
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 55522 245789999998754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-09 Score=121.38 Aligned_cols=204 Identities=12% Similarity=0.029 Sum_probs=137.5
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCCCCEEEEEEC-----
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAEDVHLLASASV----- 278 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~----- 278 (1395)
+..+..+...+.+++|+++|+++++...++.|.+||..++....+.. ....+.+++| .++|+++++.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~vtd~~~g~~~ 139 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL-APDGSLWFSDPTYGIDK 139 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE-CTTSCEEEEECSHHHHC
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE-CCCCCEEEECCcccccc
Confidence 44556677889999999999988877777899999998775443321 1235778999 889998887431
Q ss_pred ------------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCC
Q 039790 279 ------------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNR 345 (1395)
Q Consensus 279 ------------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~ 345 (1395)
.+.|+.|+.. +. +.....+......++|++++..+ ++.. ++.+.+|+...
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~---------------~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 140 PEEGYGGEMELPGRWVFRLAPD-GT---------------LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNA 202 (296)
T ss_dssp GGGSSCCCCCSSSCEEEEECTT-SC---------------EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECS
T ss_pred ccccccccccCCCcEEEEECCC-CC---------------EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECC
Confidence 2345555544 33 12223344556789999999877 4444 56788887642
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s 425 (1395)
.+.. ......+..+...+.+++|+++| +++++. ++.|.+||.. ++.+..+..+.+ +++
T Consensus 203 ~g~~----------------~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~ 260 (296)
T 3e5z_A 203 RGET----------------EYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSN 260 (296)
T ss_dssp SSCE----------------EEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCE
T ss_pred CCcC----------------cCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEEEEEECCCC--cee
Confidence 2210 00012223355667889999998 666655 8899999976 888888887764 899
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++|. .++++.|++++ .+ .|.-++..+.
T Consensus 261 ~~f~---~~d~~~L~v~t-~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 261 LCFG---GPEGRTLYMTV-ST-EFWSIETNVR 287 (296)
T ss_dssp EEEE---STTSCEEEEEE-TT-EEEEEECSCC
T ss_pred EEEE---CCCCCEEEEEc-CC-eEEEEEcccc
Confidence 9994 17888888866 44 4545555543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-08 Score=117.88 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=148.4
Q ss_pred cCCeEEEEECCCCceEE-e-c-----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 236 KLGNIRILNIITALRSL-L-R-----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~-l-~-----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.++.|.+||..++.... + . .......++++ . ++.++++...+++|.+||..+++ . +.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~-~-~~~lyv~~~~~~~v~viD~~t~~-----------~---~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI-R-DGIGWIVVNNSHVIFAIDINTFK-----------E---VG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE-E-TTEEEEEEGGGTEEEEEETTTCC-----------E---EE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE-E-CCEEEEEEcCCCEEEEEECcccE-----------E---EE
Confidence 47899999999986432 1 1 12245678888 3 45566666778999999999887 2 22
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc-----CCCeEEE
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH-----DGEITEL 382 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h-----~~~V~sl 382 (1395)
.+. .......+++++++ .++++. .++.+.+||...... ...+... ......+
T Consensus 79 ~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--------------------~~~i~~g~~~~~~~~p~~i 136 (328)
T 3dsm_A 79 RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI--------------------TGYIECPDMDMESGSTEQM 136 (328)
T ss_dssp EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE--------------------EEEEECTTCCTTTCBCCCE
T ss_pred EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE--------------------EEEEEcCCccccCCCcceE
Confidence 222 23456688998887 677776 678888887643211 1111111 1145567
Q ss_pred EEecCCCcEEEEEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----------CeEEE
Q 039790 383 SMCQWLTTRLASAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----------RELKI 451 (1395)
Q Consensus 383 afspdg~~~LaSgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----------g~I~I 451 (1395)
++ . +++++++.. .+++|.+||..+++.+.++.... ....++++ ++|++++++. .+ +.|.+
T Consensus 137 ~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~----~dG~l~v~~~-~~~~~~~~~~~~~~v~~ 207 (328)
T 3dsm_A 137 VQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMD----KYNKMWTITD-GGYEGSPYGYEAPSLYR 207 (328)
T ss_dssp EE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEEC----TTSEEEEEBC-CBCTTCSSCBCCCEEEE
T ss_pred EE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEc----CCCCEEEEEC-CCccCCccccCCceEEE
Confidence 77 3 425555544 48999999999999888887543 47889998 9998777644 43 78999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
||..++ +.+.++....+. ....+++++++.+|..... .|++||..+++.
T Consensus 208 id~~t~------------~v~~~~~~~~g~--------~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 208 IDAETF------------TVEKQFKFKLGD--------WPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EETTTT------------EEEEEEECCTTC--------CCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EECCCC------------eEEEEEecCCCC--------CceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 999887 777777643221 1135999999998877654 899999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-09 Score=117.05 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=136.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
..+.+++++++|+++++.. ++.|++||..++....+. .....+.+|++ .++|+++++...++.|++|+..+...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~--- 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQ--- 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCCSC---
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEE-CCCCCEEEEECCCCEEEEEECCCcee---
Confidence 4567899999999666655 889999999877554443 23367899999 78899888888889999997654331
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.............+++++++. ++++.. ++.+.+|+...... ......
T Consensus 142 -----------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~--------------------~~~~~~ 189 (270)
T 1rwi_B 142 -----------TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ--------------------VVLPFT 189 (270)
T ss_dssp -----------EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE--------------------EECCCS
T ss_pred -----------EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce--------------------Eeeccc
Confidence 011112223567899999886 555554 56777776532110 011112
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+...+.+|+++++| +++++...++.|.+||............+.. .+.+++|+ ++|+.+++ ...++.|++|++
T Consensus 190 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-~p~~i~~~----~~g~l~v~-~~~~~~v~~~~~ 262 (270)
T 1rwi_B 190 DITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN-TPLAVAVD----SDRTVYVA-DRGNDRVVKLTS 262 (270)
T ss_dssp SCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCS-CEEEEEEC----TTCCEEEE-EGGGTEEEEECC
T ss_pred CCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCC-CceeEEEC----CCCCEEEE-ECCCCEEEEEcC
Confidence 33678999999998 7888887889999999866544332222323 68999998 89986666 448999999998
Q ss_pred CCC
Q 039790 455 AEE 457 (1395)
Q Consensus 455 ~tg 457 (1395)
...
T Consensus 263 ~~~ 265 (270)
T 1rwi_B 263 LEH 265 (270)
T ss_dssp CGG
T ss_pred CCc
Confidence 754
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-09 Score=137.45 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=157.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEc-----CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc-------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLK-----LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR------- 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~-----DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt------- 281 (1395)
+|...+.++.|||||++||++.. +..|+|||+.++.......+......++| + |++.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~W-s-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISW-L-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEE-E-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEE-e-CCCEEEEEEecCcccccccc
Confidence 35567889999999999997643 25799999999864433222112357899 7 9999999988854
Q ss_pred ------EEEEECCCCCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCc
Q 039790 282 ------FFIWNITEGPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGK 348 (1395)
Q Consensus 282 ------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~ 348 (1395)
|++|++.++.... ..++.. +......+.|++++..+++.... ..+.+++......
T Consensus 204 ~~~~~~v~~~~lgt~~~~~------------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD------------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC------------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cCCCcEEEEEECCCCcccc------------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 9999998764110 112222 23345678999999988776653 2455555422110
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCce--eEEecCCCCCCe
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTP--LAVLRPYDGHPV 423 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~--l~tl~~h~~~~V 423 (1395)
....+..+.+..... |+++|+.+++....| +.|.+||+.++.+ ...+..|.. .+
T Consensus 272 -------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~ 330 (693)
T 3iuj_A 272 -------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QV 330 (693)
T ss_dssp -------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SC
T ss_pred -------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CE
Confidence 133444566666555 667775666666554 6799999988765 456777765 44
Q ss_pred eEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
. .|+ +++++|+.+...|+ .|++||+..+ ....+...... ....+.+++++.
T Consensus 331 ~--~~s----~~g~~lv~~~~~~g~~~l~~~d~~g~-------------~~~~l~~p~~~--------~~~~~~~~~d~~ 383 (693)
T 3iuj_A 331 L--TVH----SGSGYLFAEYMVDATARVEQFDYEGK-------------RVREVALPGLG--------SVSGFNGKHDDP 383 (693)
T ss_dssp E--EEE----EETTEEEEEEEETTEEEEEEECTTSC-------------EEEEECCSSSS--------EEEECCCCTTCS
T ss_pred E--EEE----EECCEEEEEEEECCeeEEEEEECCCC-------------eeEEeecCCCc--------eEEeeecCCCCC
Confidence 4 888 88888887764555 6888988743 33444432211 111344567777
Q ss_pred EEEEEeCC----CeEEEEEcCCCC
Q 039790 502 FLLANAKK----NAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSgs~D----g~I~iWdl~~g~ 521 (1395)
.|+....+ +.|+.||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 66555444 789999987653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-08 Score=112.65 Aligned_cols=229 Identities=9% Similarity=-0.017 Sum_probs=149.4
Q ss_pred CCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 214 SDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
.+...-.+..|++++ .++++...++.|+.||..++....+. +...+.+++| .++|+++++ . ++.|++||..+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~-~~dG~l~v~-~-~~~l~~~d~~~g~- 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVAL-RQSGGYVAT-I-GTKFCALNWKEQS- 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEE-BTTSSEEEE-E-TTEEEEEETTTTE-
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEE-CCCCCEEEE-E-CCeEEEEECCCCc-
Confidence 344566788999954 55666667899999999988655443 4578999999 889996555 3 5689999998765
Q ss_pred CCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeC-----------CeEEEEEcCCCCccccccCCCCCc
Q 039790 293 EEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIG-----------NRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~-----------~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+..+..... ....+..+++++++..++..... +.+++++.. +.
T Consensus 85 -----------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~----------- 140 (297)
T 3g4e_A 85 -----------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HH----------- 140 (297)
T ss_dssp -----------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SC-----------
T ss_pred -----------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CC-----------
Confidence 111111111 12335678999998744433221 234444321 11
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCce-----eEEecCCCCCCeeEEEEeecC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTP-----LAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~-----l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+....+.++|+|++..++++.+.++.|.+||+ .+|.. +..+..+.+ .+..+++.
T Consensus 141 ---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d--- 207 (297)
T 3g4e_A 141 ---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCID--- 207 (297)
T ss_dssp ---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEB---
T ss_pred ---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEEC---
Confidence 12222334457899999998445567777899999987 45543 223333334 68899998
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANA 507 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs 507 (1395)
++|.+.++.. .++.|.+||..++ +++..+..+...+ .+++|. +++..|...+
T Consensus 208 -~~G~lwva~~-~~~~v~~~d~~tG------------~~~~~i~~p~~~~---------t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 208 -AEGKLWVACY-NGGRVIRLDPVTG------------KRLQTVKLPVDKT---------TSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -TTSCEEEEEE-TTTEEEEECTTTC------------CEEEEEECSSSBE---------EEEEEESGGGCEEEEEE
T ss_pred -CCCCEEEEEc-CCCEEEEEcCCCc------------eEEEEEECCCCCc---------eEEEEeCCCCCEEEEEc
Confidence 8997776654 6788999999888 8888887664333 247887 7766554443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-09 Score=134.51 Aligned_cols=279 Identities=10% Similarity=0.024 Sum_probs=160.9
Q ss_pred EecCCCEEEEEEcCCe---EEEEEC--C---CCceEEe-------ccCCCCeEEEEEeeCCCCEEEEEECC-----CcEE
Q 039790 224 IAVNRNYICYGLKLGN---IRILNI--I---TALRSLL-------RGHTQRVTDMAFFAEDVHLLASASVD-----GRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~---IrIWd~--~---~~~~~~l-------~~H~~~V~slaf~s~dg~~LaSgs~D-----gtV~ 283 (1395)
.+++|+++++...++. -.||.. . ++....+ .+|...+..++| ++||++|+.++.+ .+|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~-SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAA-SDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEE-CTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEE-CCCCCEEEEEEcCCCCceEEEE
Confidence 3489999998876543 455544 3 4433332 234447889999 8999999887654 4699
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe--------------EEEEEcCCCCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR--------------ILKIDSNRVGKG 349 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~--------------ii~~d~~~~~~~ 349 (1395)
+||+.+++. +. ... ....+..++|+|+ +.|+.+..++. +.+|+... +..
T Consensus 193 v~dl~tg~~-----------~~-~~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt-~~~ 255 (741)
T 1yr2_A 193 FVGVADGKP-----------LA-DEL---KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT-PQS 255 (741)
T ss_dssp EEETTTCCE-----------EE-EEE---EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS-CGG
T ss_pred EEECCCCCC-----------CC-ccC---CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC-Cch
Confidence 999998871 11 111 0111346899999 88888776543 44444321 110
Q ss_pred ccccCCCCCccCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC--ceeEEecCCCC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKS--TPLAVLRPYDG 420 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg--~~l~tl~~h~~ 420 (1395)
....++.. |...+..+.|+||| ++|+..+.++ .|++||+.++ .+...+..+..
T Consensus 256 -----------------~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 256 -----------------ADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -----------------GCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred -----------------hCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 01223332 33468999999999 6777766544 7999999887 42556665554
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecC---CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPL---NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~---Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
.+.... + ++|+.|+..+.. ++.|.+||+.++ . ......+..+... ...+.++
T Consensus 318 -~~~~~~-~----~dg~~l~~~s~~~~~~~~l~~~d~~~~---------~-~~~~~l~~~~~~~---------l~~~~~~ 372 (741)
T 1yr2_A 318 -AQWDFV-D----GVGDQLWFVSGDGAPLKKIVRVDLSGS---------T-PRFDTVVPESKDN---------LESVGIA 372 (741)
T ss_dssp -SCEEEE-E----EETTEEEEEECTTCTTCEEEEEECSSS---------S-CEEEEEECCCSSE---------EEEEEEE
T ss_pred -ceEEEE-e----ccCCEEEEEECCCCCCCEEEEEeCCCC---------c-cccEEEecCCCCe---------EEEEEEE
Confidence 455554 4 688888776522 456999998764 1 1222223222211 1235555
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-CCCCCCcceeeeeeeeccccEEEEecCCC-CcC------cCCCCeEEEEEcCCCcee
Q 039790 498 RAGLFLLANAKKNAIYAIHMDY-GPNPASTRMDYIAEFTVTMPILSLTGTTT-DAS------PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~-g~~~~~~~~~~i~~f~~~~~ils~~~~~~-d~~------~s~dg~V~lWdv~t~~i~ 569 (1395)
++.++++...|+..+||.+.. |. ....+. +.....+..+.+... +.+ ....+.|++||+.+++..
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~-----~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGK-----PAGAVS-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSC-----EEEECB-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCC-----ceeecc-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 677888888899888877653 21 111111 111122223332210 111 123478999999988754
Q ss_pred e
Q 039790 570 Q 570 (1395)
Q Consensus 570 ~ 570 (1395)
.
T Consensus 446 ~ 446 (741)
T 1yr2_A 446 P 446 (741)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-08 Score=112.96 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=142.9
Q ss_pred CEEEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 218 LVLGRQIAVNR-NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 218 ~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
...+..|++++ .+++++..++.|.+||..++....+. +...|.+++| .++|++++++ .+ .|++||..+++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~-~~dg~l~v~~-~~-gl~~~d~~~g~~---- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAK-ISDSKQLIAS-DD-GLFLRDTATGVL---- 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEE-EETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEE-eCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence 34577899975 45566667899999999988655443 3567999999 7888877754 44 499999987761
Q ss_pred cccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 297 PQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
..+.... .....+..+++++++..++.... .+.+++++ . +.
T Consensus 122 --------~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g~-------------------- 170 (326)
T 2ghs_A 122 --------TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--GK-------------------- 170 (326)
T ss_dssp --------EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--TE--------------------
T ss_pred --------EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--Cc--------------------
Confidence 1111111 11234668999999874443322 14566665 1 21
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CC-c-----eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KS-T-----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg-~-----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
...+..+....+.++|++++..++++.+.++.|.+||+. +| . .+..+....+ .+..+++. ++|.+++
T Consensus 171 ~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d----~~G~lwv 245 (326)
T 2ghs_A 171 VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCD----AEGHIWN 245 (326)
T ss_dssp EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEEC----TTSCEEE
T ss_pred EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEEC----CCCCEEE
Confidence 112222334578999999984344555667899999986 56 3 2233333344 67889998 8898777
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEe
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANA 507 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs 507 (1395)
+.. .++.|.+||. ++ +.+..+..+...+ ..++|+ +++..|+.++
T Consensus 246 a~~-~~~~v~~~d~-~g------------~~~~~i~~~~~~~---------~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 246 ARW-GEGAVDRYDT-DG------------NHIARYEVPGKQT---------TCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEE-TTTEEEEECT-TC------------CEEEEEECSCSBE---------EEEEEESTTSCEEEEEE
T ss_pred EEe-CCCEEEEECC-CC------------CEEEEEECCCCCc---------EEEEEecCCCCEEEEEe
Confidence 654 5789999998 45 6666666554322 358887 7876554443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-07 Score=109.69 Aligned_cols=239 Identities=10% Similarity=0.004 Sum_probs=146.5
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEeccC-------CCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRGH-------TQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~H-------~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.++|+|||++|+++. .++.|.+||..+.. +..+.-- ...-..++| ++||++|+.+.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~-spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE-CCCCCEEEEEecCCCC
Confidence 789999999999885 36789999998763 2222111 123457899 999999998874 47
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
.|.++| .+++. +.. +... .++.+.+++.. +++.+.++.++.|+. .++....
T Consensus 149 ~v~viD-~t~~~--------------~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~--~g~~~~~------ 201 (373)
T 2mad_H 149 AVGLVV-QGGSS--------------DDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH--AGGAAGA------ 201 (373)
T ss_pred eEEEEE-CCCCE--------------EeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC--CCcEEEE------
Confidence 899999 88761 111 1111 12445555543 344445666666665 2221100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCC---------CCCeeEEE
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYD---------GHPVNCVT 427 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~---------~~~V~sV~ 427 (1395)
......+.+.........|.++++.+++. +.++.|.++|+..+. .+..+.... ......+.
T Consensus 202 -------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 202 -------GLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred -------EeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 00000011111112335667776444444 367899999987652 233332111 01234477
Q ss_pred EeecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 428 FLIGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
|+ +|+..|+++.. .++.|.++|+.++ +.+.++...... ..+.|++
T Consensus 274 ~s----~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~------------~vv~~i~~g~~p----------~~i~~s~ 327 (373)
T 2mad_H 274 YL----KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG------------QTSSQISLGHDV----------DAISVAQ 327 (373)
T ss_pred EC----CCCCEEEEEeccCCcccccCCCCeEEEEECCCC------------EEEEEEECCCCc----------CeEEECC
Confidence 87 88888777542 1357999999888 888888654321 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +++++. .++.|.+||+.+++
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 999 677766 58999999998865
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-08 Score=114.99 Aligned_cols=204 Identities=11% Similarity=0.095 Sum_probs=138.6
Q ss_pred CCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEe-cc-----CCCCeEEEEEeeCCCCEEEEEECC--------
Q 039790 215 DPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITALRSLL-RG-----HTQRVTDMAFFAEDVHLLASASVD-------- 279 (1395)
Q Consensus 215 h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l-~~-----H~~~V~slaf~s~dg~~LaSgs~D-------- 279 (1395)
+...+.+++++++ |+++++. ..+.|.+||.. +....+ .. +...+.++++ .++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE-CCCCCEEEEecCccccccccc
Confidence 3467889999999 6655544 44579999998 755444 22 1245889999 8889888877665
Q ss_pred -------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEe----CCCCeEEEEEe-CCeEEEEEcCCCC
Q 039790 280 -------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWH----PHKQEILMLAI-GNRILKIDSNRVG 347 (1395)
Q Consensus 280 -------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~s----p~~~~lla~g~-~~~ii~~d~~~~~ 347 (1395)
+.|+.||.. ++ .. .+. .+......++|+ +++..++++.. ++.+.+|+....+
T Consensus 146 ~~~~~~~~~l~~~~~~-g~-----------~~---~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQ-----------MI---QVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp BTTSSSCEEEEEECTT-SC-----------EE---EEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred ccccCCCCeEEEECCC-CC-----------EE---Eec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 567777755 43 11 111 112234678999 98877777664 5778888753111
Q ss_pred ccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
... .......+.++. ..+..++++++| +++++...++.|.+||..+++.+..+..+.. .+.++
T Consensus 210 ~~~--------------~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i 273 (314)
T 1pjx_A 210 KIE--------------NKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNL 273 (314)
T ss_dssp EEE--------------EEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEE
T ss_pred ccc--------------cceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeE
Confidence 100 000012233343 568889999998 7888877889999999988888888877755 89999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+|+ ++|++|++++..++.|..|++...
T Consensus 274 ~~~----~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 274 HFK----PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEC----TTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEC----CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 998 999967666656789999998653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-07 Score=106.75 Aligned_cols=237 Identities=8% Similarity=-0.020 Sum_probs=160.1
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE--eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~--l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
....+.++.+.++|++.++...++.|.+||.. +.... +..+...+.+|++ .+++.++++...++.|.+||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIV-SSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEE-CCCCCEEEEecCCCeEEEECCC-CCe
Confidence 44678899999999988877778999999988 64433 3334467999999 7888888877778899999987 551
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ........+..+++.+++. ++++.. ++.+.+++.. +... ...
T Consensus 95 ------------~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~------------------~~~ 140 (300)
T 2qc5_A 95 ------------TEY-PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIY------------------EYD 140 (300)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEE------------------EEE
T ss_pred ------------EEe-cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC--CCEE------------------Ecc
Confidence 111 1122335567888988775 444444 6677777653 2210 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+......+.++++.++| +++++...++.|..||. +++.... +..+.. .+.++++. ++|..+++.. .++.|.
T Consensus 141 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d----~~g~l~v~~~-~~~~i~ 212 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAA-APVGITSG----NDGALWFVEI-MGNKIG 212 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----TTSSEEEEET-TTTEEE
T ss_pred CCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCC-CcceEEEC----CCCCEEEEcc-CCCEEE
Confidence 22244578999999998 67777666889999998 6654432 223333 78999998 8887666543 677899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+||. ++ .... +...... .....++++++|.++++...++.|+.|+.
T Consensus 213 ~~~~-~g------------~~~~-~~~~~~~-------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 213 RITT-TG------------EISE-YDIPTPN-------ARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECT-TC------------CEEE-EECSSTT-------CCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEcC-CC------------cEEE-EECCCCC-------CCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 9998 43 2222 2211110 11235888999998888877889999986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-07 Score=102.66 Aligned_cols=235 Identities=9% Similarity=-0.035 Sum_probs=155.7
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+...+.++++.++|+++++...++.|.+||.. +....+ ......+.++++ .+++.++++...++.|..||.. ++.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITE-GLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceE-CCCCCEEEEccCCCeEEEECCC-CCE
Confidence 34678899999999987777668899999988 543333 234467999999 7888888887778899999987 541
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ...........+++.+++. ++++.. ++.+.+++. . +... ...
T Consensus 137 ------------~~~-~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~-g~~~------------------~~~ 182 (300)
T 2qc5_A 137 ------------YEY-DLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-T-GKLE------------------EYP 182 (300)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CCEE------------------EEE
T ss_pred ------------EEc-cCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-C-CcEE------------------Eee
Confidence 111 1222345567889999887 555554 567777765 1 1110 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
...+...+.++++.++| +++++...++.|.+||. ++..... +..+.. .+.++++. ++|..+++. ..++.|.
T Consensus 183 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d----~~g~l~v~~-~~~~~i~ 254 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISEYDIPTPNA-RPHAITAG----KNSEIWFTE-WGANQIG 254 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----STTCEEEEE-TTTTEEE
T ss_pred CCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEEEECCCCCC-CceEEEEC----CCCCEEEec-cCCCeEE
Confidence 12344578999999988 77777667788999998 5554433 333333 78999998 888866654 3678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.||. ++ .. ..+...... .....++++++|.++++.. + .|..++.
T Consensus 255 ~~~~-~g------------~~-~~~~~~~~~-------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 255 RITN-DN------------TI-QEYQLQTEN-------AEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EECT-TS------------CE-EEEECCSTT-------CCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EECC-CC------------cE-EEEECCccC-------CccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9998 33 22 233222110 1123488889999777665 4 6776664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-08 Score=111.96 Aligned_cols=216 Identities=8% Similarity=-0.025 Sum_probs=148.8
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~LasGs 235 (1395)
|...|++++.++.|.+||.. +|+. +|.+. .+. ..+.++.++++|++|+ +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~------~w~~~--------------------~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEI------VWEYP--------------------LEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEE------EEEEE--------------------CCTTCCCCEEEECTTSCEEE--E
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeE------EEEeC--------------------CCccCCCcCeEECCCCCEEE--e
Confidence 45788999999999999942 2322 23332 222 3567888999999888 4
Q ss_pred cCCeEEEEECCCCceEEeccC-CCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEEEEEecC-
Q 039790 236 KLGNIRILNIITALRSLLRGH-TQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD- 312 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~- 312 (1395)
.++.|+.||.....+..+..+ ...+.++.+ .++|++|++.+. ++.|..+|. +|+ .+..+.+...
T Consensus 54 ~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~-~~dG~~lv~~~~~~~~v~~vd~-~Gk-----------~l~~~~~~~~~ 120 (276)
T 3no2_A 54 YSKGAKMITRDGRELWNIAAPAGCEMQTARI-LPDGNALVAWCGHPSTILEVNM-KGE-----------VLSKTEFETGI 120 (276)
T ss_dssp CBSEEEEECTTSCEEEEEECCTTCEEEEEEE-CTTSCEEEEEESTTEEEEEECT-TSC-----------EEEEEEECCSC
T ss_pred CCCCEEEECCCCCEEEEEcCCCCccccccEE-CCCCCEEEEecCCCCEEEEEeC-CCC-----------EEEEEeccCCC
Confidence 578899999944456666654 347889999 899999999887 777877775 455 3333333221
Q ss_pred --CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 313 --GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 --~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
+......+.+.+++..+++...++.++.|+.. ++. +..+.. ...+.++.+.++| +
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~-------------------~w~~~~-~~~~~~~~~~~~g-~ 177 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQL-------------------LNSVKL-SGTPFSSAFLDNG-D 177 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCE-------------------EEEEEC-SSCCCEEEECTTS-C
T ss_pred CcccccccCceECCCCCEEEEecCCCEEEEECCC--CCE-------------------EEEEEC-CCCccceeEcCCC-C
Confidence 11234456788888866665556777777653 331 233332 2456677888888 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCCCCCcEEEEE
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
++++++.+++|..||..+|+.+.++..+.. ..+..+... ++|..+++.
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~----~~G~i~v~~ 230 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL----QNGGLYICN 230 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC----TTSCEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc----CCCCEEEEe
Confidence 888888888999999999999999864321 137788887 899888875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-07 Score=109.41 Aligned_cols=239 Identities=8% Similarity=-0.000 Sum_probs=152.5
Q ss_pred eeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+..+..+.....+..|+++|+ +++++..++.|..|+. ++....+..+...+..++| .++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~-d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAV-DAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEE-CTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeE-CCCCCEEEEECCCCEEEEECC
Confidence 444555667788999999998 5666777899999998 4556666667788999999 889987776666688999997
Q ss_pred CCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEE---Ee--------------CCeEEEEEcCCCCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILML---AI--------------GNRILKIDSNRVGKG 349 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~---g~--------------~~~ii~~d~~~~~~~ 349 (1395)
. +.. ........ .....+..+++++++..+++- |. .+.+++++... +.
T Consensus 115 ~-g~~-----------~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~- 180 (305)
T 3dr2_A 115 D-GQA-----------HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SP- 180 (305)
T ss_dssp T-SCE-----------EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CC-
T ss_pred C-CCE-----------EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-Cc-
Confidence 6 541 00001111 112345678999988644421 11 13455554321 11
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceeE---Ee-cCCC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD------GTVKIWDDRKSTPLA---VL-RPYD 419 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D------g~IrIWDl~sg~~l~---tl-~~h~ 419 (1395)
+..+. .....+.++|+||+ ++|+.+..+ +.|++||+..+. +. .+ ....
T Consensus 181 -------------------~~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~ 238 (305)
T 3dr2_A 181 -------------------LQRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPD 238 (305)
T ss_dssp -------------------CEEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSS
T ss_pred -------------------EEEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCC
Confidence 11112 33457889999998 666666554 789999987654 21 12 1223
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
+ .+..+++. ++|++.++ . .+ .|.+||.. + +.+..+..+.. . ..++|+++
T Consensus 239 ~-~pdgi~~d----~~G~lwv~-~-~~-gv~~~~~~-g------------~~~~~~~~~~~-~---------~~~~f~~d 287 (305)
T 3dr2_A 239 G-LPDGFCVD----RGGWLWSS-S-GT-GVCVFDSD-G------------QLLGHIPTPGT-A---------SNCTFDQA 287 (305)
T ss_dssp S-CCCSEEEC----TTSCEEEC-C-SS-EEEEECTT-S------------CEEEEEECSSC-C---------CEEEECTT
T ss_pred C-CCCeEEEC----CCCCEEEe-c-CC-cEEEECCC-C------------CEEEEEECCCc-e---------eEEEEeCC
Confidence 3 56788998 89985554 3 34 59999973 4 66677765442 1 24888899
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 039790 500 GLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl 517 (1395)
+..|..++.+ .++.+++
T Consensus 288 ~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 288 QQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp SCEEEEEETT-EEEEEEC
T ss_pred CCEEEEEcCC-eEEEEEC
Confidence 8888777765 4554443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=119.34 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=125.4
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-----------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-----------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-----------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
.+..+++++...++++|+.++ ++||++.... ......+.. |+.|+| ++.+|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 688899999999999999985 5569865421 112334667 999999 88999998 889999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+.+... ......+...+..+.+.+. .++++..++.+.+|+.....
T Consensus 113 v~sl~~--------------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~------------------- 157 (388)
T 1xip_A 113 LEELSE--------------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS------------------- 157 (388)
T ss_dssp SSSTTC--------------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-------------------
T ss_pred chhhhc--------------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-------------------
Confidence 987541 1111222334555555543 47777778888888764321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--eEEe------c---CCCCCCeeEEEEeecCCCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP--LAVL------R---PYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~--l~tl------~---~h~~~~V~sV~fs~~~~pd 435 (1395)
.. .+...|+|++|||+| ++.|..||+|++|+...+.+ ..++ . +|.. .|.+|.|. ++
T Consensus 158 --~~---~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~V~sI~wl----~~ 224 (388)
T 1xip_A 158 --TK---QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-SPLSVTIL----SP 224 (388)
T ss_dssp --EE---EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-EEEEEEES----SS
T ss_pred --cc---cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-eEEEEEEe----cC
Confidence 11 145689999999987 67899999999999887775 6677 2 3654 89999999 89
Q ss_pred CcEEEEEe
Q 039790 436 HIVLITGG 443 (1395)
Q Consensus 436 g~~L~s~G 443 (1395)
+.++++-+
T Consensus 225 ~~flv~y~ 232 (388)
T 1xip_A 225 QDFLAVFG 232 (388)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEc
Confidence 99988755
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-07 Score=110.59 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=148.1
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEeccC-------CCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRGH-------TQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~H-------~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.++++|||++|+++. .++.|.+||..+.. +..+.-. ...-..++| ++||++|+.+.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~-spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE-cCCCCEEEEEEcCCCC
Confidence 389999999887775 36789999999975 3333211 124567899 999999888864 68
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|+.+++ .+..+.+- . +...+......+++.+.++.+..++....++... ...
T Consensus 161 ~VsVID~~t~~-----------vv~tI~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~----- 217 (386)
T 3sjl_D 161 AVGVVDLEGKA-----------FKRMLDVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THT----- 217 (386)
T ss_dssp EEEEEETTTTE-----------EEEEEECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EEC-----
T ss_pred eEEEEECCCCc-----------EEEEEECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eec-----
Confidence 99999999887 22222211 1 0122222334556667777777776644332100 000
Q ss_pred CccccccceEEEcccCCCeE-EEEEe-cCCCcEEEEEeCCCcEEEEeCCCCc--eeEEec---------CC-CCCCeeEE
Q 039790 361 PVDELINGVQLVGKHDGEIT-ELSMC-QWLTTRLASASLDGTVKIWDDRKST--PLAVLR---------PY-DGHPVNCV 426 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~-slafs-pdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~---------~h-~~~~V~sV 426 (1395)
..+..-...+. ...|. ++| ++++ .+.+|+|.+.|+.++. .+..+. +. -+ ....+
T Consensus 218 ---------~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-g~q~~ 285 (386)
T 3sjl_D 218 ---------EVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-GWQQV 285 (386)
T ss_dssp ---------CCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-SSSCE
T ss_pred ---------ceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCC-Cccee
Confidence 00000111111 23564 555 4444 5668999999997664 333332 10 11 34567
Q ss_pred EEeecCCCCCcEEEEEecC---------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 427 TFLIGPHPQHIVLITGGPL---------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~---------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
+++ +++..|+.+... .++|.+.|+.++ +.+.++...... ..+.++
T Consensus 286 a~~----~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~------------kv~~~i~vg~~~----------~~lavs 339 (386)
T 3sjl_D 286 AYH----RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG------------ERLAKFEMGHEI----------DSINVS 339 (386)
T ss_dssp EEE----TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEEEEEEE----------CEEEEC
T ss_pred eEC----CCCCeEEEEeccccccccCCCCCEEEEEECCCC------------eEEEEEECCCCc----------ceEEEC
Confidence 888 888887775411 257999999888 888888754321 259999
Q ss_pred CCCC-EEEE-EeCCCeEEEEEcCCCC
Q 039790 498 RAGL-FLLA-NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~dg~-~LaS-gs~Dg~I~iWdl~~g~ 521 (1395)
+||+ +|++ ...++.|.++|..+++
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 9996 5554 5669999999998865
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-06 Score=102.85 Aligned_cols=282 Identities=9% Similarity=-0.019 Sum_probs=160.2
Q ss_pred EecCCCEEEEEEc--CC---eEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEEC
Q 039790 224 IAVNRNYICYGLK--LG---NIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNI 287 (1395)
Q Consensus 224 ~Spdg~~LasGs~--DG---~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl 287 (1395)
..++++++++... .+ .|.+||..++. +..+...... .++| ++||++|+.+. .++.|.+||.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~-spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVA-AHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEE-CCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3467776666542 22 88999999875 3344433333 8999 99999988886 3678999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+.+ .+..+.+-.. .......+.|+|++++++++.. .+.+.++| .. ++.
T Consensus 105 ~t~~-----------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~------------ 159 (373)
T 2mad_H 105 VTFL-----------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSS------------ 159 (373)
T ss_pred CCCc-----------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCE------------
Confidence 8766 1222221100 0123347899999999998875 46688877 33 221
Q ss_pred ccccccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCCC-eeEEEEeecCCC
Q 039790 362 VDELINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGHP-VNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~~-V~sV~fs~~~~p 434 (1395)
+.. +. .. .|+.+.+++.+.+++.+.||.+.+||. +++.+.... .... + .....|. +
T Consensus 160 -------~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~-p~~~~~~~~----~ 222 (373)
T 2mad_H 160 -------DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ-NLLTQPAQA----N 222 (373)
T ss_pred -------EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc-ceeecceeE----e
Confidence 122 21 11 135666777678888889999999999 887764332 1111 2 2234566 5
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-ccccceEEEEeCCCCEEEEEeC-----
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-DAFFNQVVALNRAGLFLLANAK----- 508 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-~~~~~~~l~~S~dg~~LaSgs~----- 508 (1395)
++..++... .++.|.+.|+.... ...+..+........... .......+.+++||..|.....
T Consensus 223 ~~~~~~~~~-~~~~v~vid~~~~~----------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 223 KSGRIVWPV-YSGKILQADISAAG----------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cCCEEEEEc-CCceEEEEeccCCc----------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 555444434 67899999987541 122333332211100000 0001123778899887766543
Q ss_pred -----CCeEEEEEcCCCCCCCCcceeeeeeeeccc--cEEEEecCCC-CcC-cC-CCCeEEEEEcCCCcee
Q 039790 509 -----KNAIYAIHMDYGPNPASTRMDYIAEFTVTM--PILSLTGTTT-DAS-PD-GEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 509 -----Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--~ils~~~~~~-d~~-~s-~dg~V~lWdv~t~~i~ 569 (1395)
.+.|.++|+.+++ . +..+.... ..+.|+.... ..+ .. +++.|.+||+.++++.
T Consensus 292 ~~~~~~~~V~VID~~t~~-----v---v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQ-----T---SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred cccCCCCeEEEEECCCCE-----E---EEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3579999987643 2 22222221 1222222220 111 22 4677778887777654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-07 Score=106.62 Aligned_cols=209 Identities=8% Similarity=0.019 Sum_probs=134.1
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN- 336 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~- 336 (1395)
...+.|+| .++++++++...++.|++||+.++. ...+..... ... ++|+++++.++++..++
T Consensus 131 ~~P~~la~-d~~g~lyv~d~~~~~I~~id~~~g~--------------~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 131 KYMWGIAA-VGNNTVLAYQRDDPRVRLISVDDNK--------------VTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CCEEEEEE-CSTTEEEEEETTTTEEEEEETTTTE--------------EEEEEETCC-BCB-CEECTTSSEEEEEBSSTT
T ss_pred CCceEEEE-eCCCCEEEEecCCCcEEEEECCCCE--------------EEEeeccCC-CCc-eeEecCCCcEEEEecCCC
Confidence 46889999 7889888888888999999998765 112222222 233 99999999888887755
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV 414 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t 414 (1395)
.+++++........ .+..+.. +...+.+++|+|+++.++ .+..++.|+.||..++.....
T Consensus 194 ~~I~~~d~~~~~~~~-----------------~~g~~~~~~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 194 HTVYVYMKASGWAPT-----------------RIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEEEEEEGGGTTCEE-----------------EEEECCTTSCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEEEE
T ss_pred ceEEEEEcCCCceeE-----------------EeeeccchhcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEEEE
Confidence 67777653211100 0111112 456678999999553444 477789999999987764332
Q ss_pred ----ecCCCCCCe-e-EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-ccc---
Q 039790 415 ----LRPYDGHPV-N-CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELR--- 484 (1395)
Q Consensus 415 ----l~~h~~~~V-~-sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~--- 484 (1395)
..++.+ .- . .++|+ |++..|+.+...++.|+.||.... +.++.++... ...
T Consensus 256 ~~~~~~g~~~-~~P~~~ia~~----p~~g~lyv~d~~~~~I~~~~~~g~--------------~~~~~g~~~~~g~~dg~ 316 (409)
T 3hrp_A 256 KQLELSGSLG-TNPGPYLIYY----FVDSNFYMSDQNLSSVYKITPDGE--------------CEWFCGSATQKTVQDGL 316 (409)
T ss_dssp EECCCCSCCC-CSSCCEEEEE----TTTTEEEEEETTTTEEEEECTTCC--------------EEEEEECTTCCSCBCEE
T ss_pred ecccccCCCC-CCccccEEEe----CCCCEEEEEeCCCCEEEEEecCCC--------------EEEEEeCCCCCCcCCCc
Confidence 233333 22 3 99999 865555555668899999987532 2333332200 000
Q ss_pred --ccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCC
Q 039790 485 --LEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYG 520 (1395)
Q Consensus 485 --~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g 520 (1395)
...-.....++++++|.++++.. .++.|+.|++..|
T Consensus 317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 00001234689999999999988 8999999997654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-07 Score=102.31 Aligned_cols=192 Identities=10% Similarity=0.034 Sum_probs=127.2
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEEEECC---------Cc
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLASASVD---------GR 281 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaSgs~D---------gt 281 (1395)
...+.+++|+++|+++++ . ++.|.+||..++....+..+ ...++++++ .++|+++++...+ ..
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCC
Confidence 467899999999995554 4 56899999998865544322 245889999 8899977765332 23
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcC-CCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSN-RVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~-~~~~~~~~s~~~~~~ 359 (1395)
..||.+.... .... + .........++|++++..++++.. .+.|.+|+.. ..+...
T Consensus 130 ~~l~~~d~~g----------~~~~---~-~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~--------- 186 (297)
T 3g4e_A 130 GALYSLFPDH----------HVKK---Y-FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS--------- 186 (297)
T ss_dssp EEEEEECTTS----------CEEE---E-EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------
T ss_pred cEEEEEECCC----------CEEE---E-eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------
Confidence 4566554322 0111 1 111223457999999988877765 5677777653 222100
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.......+..+.+....+++.++| ++.++...++.|.+||..+|+.+..+..+.. .+++++|. .|+++.|
T Consensus 187 -----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~---g~d~~~L 256 (297)
T 3g4e_A 187 -----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFG---GKNYSEM 256 (297)
T ss_dssp -----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEE---SGGGCEE
T ss_pred -----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEe---CCCCCEE
Confidence 000012233345678899999998 7888877888999999999999999987765 89999997 2566666
Q ss_pred EEEe
Q 039790 440 ITGG 443 (1395)
Q Consensus 440 ~s~G 443 (1395)
+++.
T Consensus 257 ~vt~ 260 (297)
T 3g4e_A 257 YVTC 260 (297)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=107.27 Aligned_cols=261 Identities=5% Similarity=-0.015 Sum_probs=149.4
Q ss_pred CCEEEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCCCCEEEEEEC-----CCcE
Q 039790 217 GLVLGRQIAVNRNYICYGL--KLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAEDVHLLASASV-----DGRF 282 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~dg~~LaSgs~-----DgtV 282 (1395)
....+++++++|+++++.. .++.++||.+.++.+..+ .+|-..+.+|+| .++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~-d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKS-DGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEE-CSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEE-cCCCcEEEEcCCCCcCCCCeE
Confidence 6889999999999988864 235366666655554433 235578999999 788876665443 5789
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEe----CCeEEEEEcCCCCccccccCC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAI----GNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~----~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
.+||+.+++ .+..+.+-. ........++++++++.++++.. .+.+++|+.........+...
T Consensus 96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 999998876 222222211 12234578999987777777654 567777776432111101000
Q ss_pred CCCcc-CccccccceEE--Ecc------cCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCC---CCc-----eeE--Ee
Q 039790 356 EPLKC-PVDELINGVQL--VGK------HDGEITELSMCQWLTTRLASASLDG-TVKIWDDR---KST-----PLA--VL 415 (1395)
Q Consensus 356 ~~~~~-~~~~~~~~~~~--l~~------h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~---sg~-----~l~--tl 415 (1395)
..... ...-...+... ... ....++.|+|+|+| ++|+.+..++ .|..+|.. .+. ... ..
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence 00000 00000001000 000 11347889999998 6777777666 44444421 111 000 11
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
.++.+ ....++++ ++|.++++ ...++.|.+||..++ +........ . ..+...++
T Consensus 244 ~g~~g-~pdgia~d----~~G~l~va-~~~~~~V~~~d~~~G------------~~~~~~~~~-~-------~~~p~~va 297 (343)
T 2qe8_A 244 YSEKP-ICDGISID----KDHNIYVG-DLAHSAIGVITSADR------------AYKLLVTDE-K-------LSWTDSFN 297 (343)
T ss_dssp EEECC-SCSCEEEC----TTCCEEEE-EGGGTEEEEEETTTT------------EEEEEEECG-G-------GSCEEEEE
T ss_pred cccCC-CCceEEEC----CCCCEEEE-ccCCCeEEEEECCCC------------CEEEEEECC-c-------eecCCeeE
Confidence 23444 56789998 89877766 448899999998555 432222211 0 11234688
Q ss_pred EeCCCCEEEEEeCCCeEEEEE
Q 039790 496 LNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
|.++|.++++.+..+.+-+|.
T Consensus 298 ~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ECTTSCEEEEECCGGGSGGGB
T ss_pred ECCCCcEEEEeCccccccccc
Confidence 988998888877655554443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=5.8e-06 Score=97.87 Aligned_cols=220 Identities=9% Similarity=0.071 Sum_probs=136.9
Q ss_pred EEEEEEecCCCEEEEEEc--CCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCC
Q 039790 219 VLGRQIAVNRNYICYGLK--LGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEE 294 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~--DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~ 294 (1395)
-..+.|++||++|+++.. ++.|.|+|+.++. +..+.- .+ . ...| +...+.+++.+.||++.++++.+ ++.
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g-~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v-- 212 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PD-C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTP-- 212 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CS-E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCC--
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CC-c-ceee-cCCCceeEEECCCCCEEEEECCCCCeE--
Confidence 445789999999988864 6899999999985 334421 11 1 2345 66677888999999999999986 441
Q ss_pred CCcccccceEEEE-EEecCCCCCc-cEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEE
Q 039790 295 DKPQILGKIVVAI-QILADGDSVH-PRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l-~~~~~~~~~v-~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
+... ..+......+ ....|...++.++.++.++.++.++........ ..+ +.+... ...
T Consensus 213 ---------~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v----~~~-----~~~~~~~~~~ 274 (386)
T 3sjl_D 213 ---------EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF----LPA-----VEALTEAERA 274 (386)
T ss_dssp ---------EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE----CCC-----EESSCHHHHH
T ss_pred ---------EEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCccee----ecc-----eecccccccc
Confidence 1000 1111111111 124665434455557778888888864321100 000 000000 000
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASL---------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLIT 441 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~---------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s 441 (1395)
.....+....+++++++.+++++-.. .++|.++|+.+++.+.++..-. .+++|.|+ +|++ +|++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs----~D~~~~ly~ 348 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVS----QDEKPLLYA 348 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEEC----SSSSCEEEE
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEEC----CCCCeEEEE
Confidence 00011233357778988444444321 2579999999999999987442 68999999 9997 6666
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+...++.|.++|..++ +.+.++.....
T Consensus 349 tn~~~~~VsViD~~t~------------k~~~~i~~~~~ 375 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESG------------EELRSVNQLGH 375 (386)
T ss_dssp EETTTTEEEEEETTTC------------CEEEEECCCCS
T ss_pred EcCCCCeEEEEECCCC------------cEEEEecCCCC
Confidence 5546999999999998 88888876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-06 Score=104.57 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=147.8
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCce-EEec-c------CCCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITALR-SLLR-G------HTQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~~-~~l~-~------H~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.+.++|||++|+++. .++.|.+||..+... ..+. + +...-..++| ++||++|+.+.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~-spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL-TPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE-CTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEecCCCC
Confidence 789999999888875 467899999998743 3332 1 1234567889 999999998874 57
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|.+.|+.+++ .+..+.+ .. +....|++ ..+++.+.++.+..++. ..++......
T Consensus 201 ~VsVID~~t~k-----------vv~~I~v---~g----~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~----- 256 (426)
T 3c75_H 201 AVGVVDLEGKT-----------FDRMLDV---PD----CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNT----- 256 (426)
T ss_dssp EEEEEETTTTE-----------EEEEEEC---CS----EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEEC-----
T ss_pred eEEEEECCCCe-----------EEEEEEc---CC----ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEee-----
Confidence 89999999877 2222221 11 12233333 34445555666666665 3222100000
Q ss_pred cCccccccceEEEcccCCC-eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee--EEecCC---C---C---CCeeEEE
Q 039790 360 CPVDELINGVQLVGKHDGE-ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL--AVLRPY---D---G---HPVNCVT 427 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~-V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l--~tl~~h---~---~---~~V~sV~ 427 (1395)
..+...... ...+.|.+++ ..++..+..+.|.+.|+..+... ..+.-- . + .....++
T Consensus 257 ----------~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 257 ----------EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp ----------CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred ----------eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence 000001111 1135678888 45555567889999998755321 111100 0 0 0223478
Q ss_pred EeecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 428 FLIGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
|+ +++.+++++.. .++.|.++|+.+. +.+.++...... ..+.|++
T Consensus 326 ~s----~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~------------kvv~~I~vg~~P----------~gia~sp 379 (426)
T 3c75_H 326 YH----RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG------------ERINKIELGHEI----------DSINVSQ 379 (426)
T ss_dssp EE----GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEEEEEEE----------CEEEECC
T ss_pred Ec----CCCCEEEEEecccccccccCCCCEEEEEECCCC------------eEEEEEECCCCc----------CeEEEcc
Confidence 88 88887777542 1357999999988 888888754321 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +|++.. .++.|.++|+.+++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 998 777766 69999999998864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-06 Score=100.13 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=160.0
Q ss_pred cCCCEEEEEEc-C----CeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCC
Q 039790 226 VNRNYICYGLK-L----GNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITE 289 (1395)
Q Consensus 226 pdg~~LasGs~-D----G~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~t 289 (1395)
++++++++... + +.|.++|..+.. +..+.--..+ .++| ++|+++|+.+. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~-SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVA-AEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEE-CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEE-CCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 35665555543 2 699999999985 4444433344 8999 99999888776 467899999998
Q ss_pred CCCCCCCcccccceEEEEEEecCC----CCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADG----DSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
++ .+..+.+-+.. ......+.|+|++++++++.. .+.+.++|......
T Consensus 159 ~~-----------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--------------- 212 (426)
T 3c75_H 159 FL-----------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--------------- 212 (426)
T ss_dssp CC-----------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---------------
T ss_pred Cc-----------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---------------
Confidence 87 33333332010 123457899999999998875 46788887754211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE----ecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV----LRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t----l~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+..+.- .+ +....|++...+++.+.||++.+.|..+++.... +..........+.|. +++..+
T Consensus 213 -----v~~I~v-~g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~----~dg~~~ 279 (426)
T 3c75_H 213 -----DRMLDV-PD---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS----LRSGRL 279 (426)
T ss_dssp -----EEEEEC-CS---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC----TTTCEE
T ss_pred -----EEEEEc-CC---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec----CCCCEE
Confidence 122211 11 1344555556777788888888888866655532 221121012345677 888777
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-cccccccccceEEEEeCCCCEEEEEeC----------
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELRLEDAFFNQVVALNRAGLFLLANAK---------- 508 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~~~~~~~~~~l~~S~dg~~LaSgs~---------- 508 (1395)
+... ..+.|.+.|+..... ..+.++...... +.......-...++++++|.+|+....
T Consensus 280 ~~~s-~~g~V~ViD~~~~~~----------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 280 VWPT-YTGKIFQADLTAEGA----------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp EEEB-TTSEEEEEEECSSCE----------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred EEEe-CCCcEEEEeccCCce----------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 6655 788999999875410 111222211000 000000000113788999876655431
Q ss_pred CCeEEEEEcCCCCCCCCcceeeeeeeeccc--cEEEEecCCC-CcC-cC-CCCeEEEEEcCCCcee
Q 039790 509 KNAIYAIHMDYGPNPASTRMDYIAEFTVTM--PILSLTGTTT-DAS-PD-GEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--~ils~~~~~~-d~~-~s-~dg~V~lWdv~t~~i~ 569 (1395)
.+.|.++|+.+.+ .+..+.... ..+.|+.... ..+ .. +++.|.|||+.++++.
T Consensus 349 s~~VsVID~~T~k--------vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 349 SRFVVVLNAETGE--------RINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEETTTCC--------EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCe--------EEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 3579999988754 223332221 1122322220 111 12 4677777777777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.7e-07 Score=101.94 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=125.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEE----EEC--
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLAS----ASV-- 278 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaS----gs~-- 278 (1395)
..+..+...+.+++|+++|+++++...++.|.+|+.+ +....+..+ ...+.++++ .++|+++++ |..
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~-d~dG~l~~td~~~g~~~~ 156 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV-ARDGAIWFTDPPFGLRKP 156 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE-CTTSCEEEECCSGGGSCG
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE-CCCCCEEEeCcCCCcccc
Confidence 3444566789999999999977666666889999987 544333221 235778999 889998886 332
Q ss_pred -----------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC------CeEEEE
Q 039790 279 -----------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG------NRILKI 341 (1395)
Q Consensus 279 -----------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~------~~ii~~ 341 (1395)
.+.|+.||..+++. . .+ . .......++|++++..++++... +.|.++
T Consensus 157 ~~~~~~~~~~~~~~v~~~d~~~g~~-----------~-~~--~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 157 SQGCPADPELAHHSVYRLPPDGSPL-----------Q-RM--A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp GGSCCCCCSSSCEEEEEECSSSCCC-----------E-EE--E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred ccccccccccCCCeEEEEcCCCCcE-----------E-EE--e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 25677788766651 0 11 1 12234579999999888877665 577777
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
+....+ + ...........+....+++.++| ++.++ +.+| |.+||. .++.+..+..+.
T Consensus 221 ~~~~~~----l-------------~~~~~~~~~~~~~pdgi~~d~~G-~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~-- 277 (305)
T 3dr2_A 221 AWRDGA----L-------------HDRRHFASVPDGLPDGFCVDRGG-WLWSS-SGTG-VCVFDS-DGQLLGHIPTPG-- 277 (305)
T ss_dssp EEETTE----E-------------EEEEEEECCSSSCCCSEEECTTS-CEEEC-CSSE-EEEECT-TSCEEEEEECSS--
T ss_pred EecCCC----c-------------cCCeEEEECCCCCCCeEEECCCC-CEEEe-cCCc-EEEECC-CCCEEEEEECCC--
Confidence 653211 0 00011111123445678899998 54444 4454 999997 688888887665
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
.+.+++|. ++++.|+.+. .++
T Consensus 278 ~~~~~~f~----~d~~~L~it~-~~~ 298 (305)
T 3dr2_A 278 TASNCTFD----QAQQRLFITG-GPC 298 (305)
T ss_dssp CCCEEEEC----TTSCEEEEEE-TTE
T ss_pred ceeEEEEe----CCCCEEEEEc-CCe
Confidence 58999998 8998888766 443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-06 Score=96.08 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=122.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEEEEC------CCcEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLASASV------DGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaSgs~------DgtV~I 284 (1395)
...+.++.|+++|+++++. .+ .|.+||..++....+... ...+.+++| .++|+++++... .+.|+.
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEE
Confidence 4579999999999877754 44 599999988865544322 236889999 889987776543 245555
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcC-CCC-ccccccCCCCCccC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSN-RVG-KGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~-~~~-~~~~~s~~~~~~~~ 361 (1395)
++ +++ +..+ . ........++|++++..++++.. .+.|.+|+.. ..+ .. ..
T Consensus 166 ~~--~g~------------~~~~--~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~---~~------- 218 (326)
T 2ghs_A 166 VA--KGK------------VTKL--F-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT---GK------- 218 (326)
T ss_dssp EE--TTE------------EEEE--E-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS---SC-------
T ss_pred Ee--CCc------------EEEe--e-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc---cC-------
Confidence 55 343 0111 1 11223567999999987777665 4667777753 111 10 00
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
......+......+..+++.++| +++++...++.|.+||. +++.+..+..+.. .+++++|. .++++.|++
T Consensus 219 ----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~---g~d~~~L~v 288 (326)
T 2ghs_A 219 ----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFI---GPDASRLLV 288 (326)
T ss_dssp ----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEE---STTSCEEEE
T ss_pred ----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEe---cCCCCEEEE
Confidence 00011222344567889999998 67777666789999998 6888888877765 79999996 156666655
Q ss_pred Ee
Q 039790 442 GG 443 (1395)
Q Consensus 442 ~G 443 (1395)
+.
T Consensus 289 t~ 290 (326)
T 2ghs_A 289 TS 290 (326)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8e-07 Score=114.64 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=123.5
Q ss_pred EEEEEecCCCEEEEEEcCCe-------------EEEEECCCCc---eEEe--cc-CCCCeEEEEEeeCCCCEEEEEEC--
Q 039790 220 LGRQIAVNRNYICYGLKLGN-------------IRILNIITAL---RSLL--RG-HTQRVTDMAFFAEDVHLLASASV-- 278 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~-------------IrIWd~~~~~---~~~l--~~-H~~~V~slaf~s~dg~~LaSgs~-- 278 (1395)
..++|+ ||+.|++++.+.. |++|++.++. ...+ .. |...+.++.| ++||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV-TEDDRFLLISAANS 255 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE-CTTSCEEEEEEESS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE-cCCCCEEEEEEccC
Confidence 356799 9999999988754 9999998863 2333 33 4556889999 999998754432
Q ss_pred --CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccc
Q 039790 279 --DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERF 352 (1395)
Q Consensus 279 --DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~ 352 (1395)
+..|++||+.++.. .+..+..+....... |+++++.+++.+.. ..++.++.......
T Consensus 256 ~~~~~i~~~d~~~~~~-------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--- 318 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENA-------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--- 318 (693)
T ss_dssp SSCCEEEEEETTSTTC-------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---
T ss_pred CCCcEEEEEECCCCCC-------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---
Confidence 24899999987631 011122222333333 67778878777664 35666665432110
Q ss_pred cCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecC-CCCCCeeEEEEe
Q 039790 353 SAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRP-YDGHPVNCVTFL 429 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs 429 (1395)
....+..|...+. .|++++..++++...|+ .|++||+..+ ....+.. +.+ .+..+.++
T Consensus 319 ---------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~-~~~~~~~~ 379 (693)
T 3iuj_A 319 ---------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLG-SVSGFNGK 379 (693)
T ss_dssp ---------------GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSS-EEEECCCC
T ss_pred ---------------ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCc-eEEeeecC
Confidence 0233444665555 88888843444444555 6899998744 4555543 333 57777777
Q ss_pred ecCCCCCcEEEEEecCC----CeEEEEECCCC
Q 039790 430 IGPHPQHIVLITGGPLN----RELKIWASAEE 457 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg 457 (1395)
+++..|+... .+ ++|..||+.++
T Consensus 380 ----~d~~~l~~~~-ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 380 ----HDDPALYFGF-ENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ----TTCSCEEEEE-ECSSSCCEEEEECTTTC
T ss_pred ----CCCCEEEEEe-cCCCCCCEEEEEECCCC
Confidence 7887766654 33 78999998776
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.4e-07 Score=105.87 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=124.1
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeE
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~i 338 (1395)
.++.+++ ++...+|++|+.|+ +++|++........ ...+. ........ ... ++.++| ++..++++ .++.+
T Consensus 39 ~~nlLai-s~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~-~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDI-SNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP-LTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEE-ETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-CCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEE-cCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-ccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcE
Confidence 6899999 88889999999985 66699764320000 00000 00001112 334 889999 66655555 88888
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
.+|+...... ......|...+.++.+.+. .+++++.||.|.+||+..+.... +
T Consensus 109 ~v~dv~sl~~--------------------~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~ 161 (388)
T 1xip_A 109 YSLDLEELSE--------------------FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----L 161 (388)
T ss_dssp EEEESSSTTC--------------------EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----E
T ss_pred EEEEchhhhc--------------------cCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----c
Confidence 8887755432 2334456777888877653 38889999999999999887654 2
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE--EEEEeccCcccccccccccceEEEE
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC--TQTLELKSSAELRLEDAFFNQVVAL 496 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~ 496 (1395)
.. .|+|++|+ |+| ++.+. .||+|++|+...+ .+ ..++.............+.+..+.|
T Consensus 162 ~~-~Vs~v~WS----pkG--~~vg~-~dg~i~~~~~~~~------------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 162 AQ-NVTSFDVT----NSQ--LAVLL-KDRSFQSFAWRNG------------EMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp EE-SEEEEEEC----SSE--EEEEE-TTSCEEEEEEETT------------EEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred cC-CceEEEEc----CCc--eEEEE-cCCcEEEEcCCCc------------cccccceecCCcccccccCCCeeEEEEEE
Confidence 33 79999999 899 45544 8999999998776 54 5556322111000001244456889
Q ss_pred eCCCCEEEEEe
Q 039790 497 NRAGLFLLANA 507 (1395)
Q Consensus 497 S~dg~~LaSgs 507 (1395)
.+++.++++-.
T Consensus 222 l~~~~flv~y~ 232 (388)
T 1xip_A 222 LSPQDFLAVFG 232 (388)
T ss_dssp SSSSEEEEEEE
T ss_pred ecCCeEEEEEc
Confidence 89999888644
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-08 Score=117.19 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=97.0
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++.+|++|+.||.|+.||..+|.. ..+.. +.+.+..+ ..++.++++++.||.|+.||..+|+............+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~-~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPT-HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecce-EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-
Confidence 678999999999999999999853 34444 45655555 45677888888999999999998873221110000000
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.... ++. .++.+++++.++.++.||... ++. +..+..+. ...++
T Consensus 84 -------~~sp----~~~-~~~~v~~g~~dg~v~a~D~~t-G~~-------------------~w~~~~~~----~~~~~ 127 (369)
T 2hz6_A 84 -------QASP----CRS-SDGILYMGKKQDIWYVIDLLT-GEK-------------------QQTLSSAF----ADSLS 127 (369)
T ss_dssp -------TTCS----CC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred -------ccCc----eEe-cCCEEEEEeCCCEEEEEECCC-CcE-------------------EEEecCCC----ccccc
Confidence 0000 111 234566666667777776543 221 11111121 13455
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC---cEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH---IVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg---~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++ ..|++++.|+.|+.||.++|+.+..+..+. ....++. .+. ..+++++ .||.|+.||..++
T Consensus 128 p~~-~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~----~~~~~~~~v~~~~-~dg~v~a~d~~tG 193 (369)
T 2hz6_A 128 PST-SLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPE----DDVDYKMSHFVSN-GDGLVVTVDSESG 193 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCC----CCTTCCCCEEEEE-TSCEEEEECTTTC
T ss_pred ccC-CEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCcccc----CCccccceEEEEC-CCCEEEEEECCCC
Confidence 666 688899999999999999998877765321 2233333 321 3455544 8999999999988
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-06 Score=105.20 Aligned_cols=236 Identities=12% Similarity=0.152 Sum_probs=137.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-Eecc--CC---CCeEE-EEEeeCCCCEEEEEE-----CCCcEEEEECCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRG--HT---QRVTD-MAFFAEDVHLLASAS-----VDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~--H~---~~V~s-laf~s~dg~~LaSgs-----~DgtV~IWdl~tg~~~~ 294 (1395)
++..|++++.||.|+.||..+|.+. .+.. +. ..+.+ ..+ .++.+++.++ .||.|+.||..+|+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 4567888999999999999998533 3322 11 11111 111 1454444332 37899999999998321
Q ss_pred CCcccccceEEEEEEec----------------------------CCCCCccEEEEeCCCCeEEEEEeCCe---------
Q 039790 295 DKPQILGKIVVAIQILA----------------------------DGDSVHPRVCWHPHKQEILMLAIGNR--------- 337 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~----------------------------~~~~~v~~v~~sp~~~~lla~g~~~~--------- 337 (1395)
.+.... .+......+.++++.+.+++...++.
T Consensus 198 -----------~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 198 -----------RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp -----------EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHT
T ss_pred -----------EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCC
Confidence 111100 01112235788888876666554432
Q ss_pred ----------EEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccC-------CCeEEEEEecCCC--cEEEEEe
Q 039790 338 ----------ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHD-------GEITELSMCQWLT--TRLASAS 396 (1395)
Q Consensus 338 ----------ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~-------~~V~slafspdg~--~~LaSgs 396 (1395)
++.+|... ++. +..+. .|. ..+....+..+|. ..|+.++
T Consensus 267 ~~gd~~y~~~v~AlD~~T-G~~-------------------~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~ 326 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADT-GEY-------------------VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP 326 (689)
T ss_dssp TCSCCTTTTEEEEEETTT-CCE-------------------EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred CCCCceeeeeEEEEEccC-Cce-------------------eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC
Confidence 55555532 221 11111 121 1122222223441 2788999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCC--------------------------------------CCeeEEEEeecCCCCCcE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDG--------------------------------------HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~--------------------------------------~~V~sV~fs~~~~pdg~~ 438 (1395)
.+|.|++||.++|+++........ ..-..++|+ |+...
T Consensus 327 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d----p~~~~ 402 (689)
T 1yiq_A 327 KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN----PDTGL 402 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE----TTTTE
T ss_pred CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC----CCCCE
Confidence 999999999999998754321110 001236777 77776
Q ss_pred EEEEec--------------------------------------------CCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 439 LITGGP--------------------------------------------LNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 439 L~s~Gs--------------------------------------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
|++... .+|.|+.||+.++ +.+-.
T Consensus 403 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG------------~~~W~ 470 (689)
T 1yiq_A 403 VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ------------QAAWE 470 (689)
T ss_dssp EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT------------EEEEE
T ss_pred EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC------------CeEeE
Confidence 665421 1377889999888 66666
Q ss_pred EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+..+.... ...+...|.+|+.++.|+.|++||..+|+
T Consensus 471 ~~~~~~~~----------~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 471 VPYVTIFN----------GGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEESSSCC----------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCCCcc----------CccceECCCEEEEECCCCcEEEEECCCCc
Confidence 65543211 12445577888889999999999999986
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-05 Score=90.16 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=146.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccC---------CCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGH---------TQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H---------~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++..|++++.+|.|+.||..+|... .+... ...+. .+.. ++..++.++.++.|+.+|..+|+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCE---
Confidence 3567888888999999999988533 22221 22232 2333 456788889999999999999872
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVG 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~ 373 (1395)
+..... . .......... ++.+++.+.++.++.++....... |..... .....
T Consensus 126 --------~W~~~~--~-~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~-------------W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 126 --------AWQTKV--A-GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVK-------------WTVNLDMPSLSLR 179 (376)
T ss_dssp --------EEEEEC--S-SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEE-------------EEEECCC-----C
T ss_pred --------EEEEeC--C-CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEE-------------EEEeCCCCceeec
Confidence 111111 1 1111111222 446777667777888876432110 110000 00001
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCC---------e-eEEEEeecCCCCCcEEEEEe
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP---------V-NCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~---------V-~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.. ...+. + ..++.++.++.|..||..+|+.+..+....... + ....+ .+..+++++
T Consensus 180 ~~~----~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~v~~~~ 246 (376)
T 3q7m_A 180 GES----APTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV------VNGVVFALA 246 (376)
T ss_dssp CCC----CCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE------ETTEEEEEC
T ss_pred CCC----CcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE------ECCEEEEEe
Confidence 111 11222 2 467778889999999999999888776332100 1 11122 234555544
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
.++.|..+|..++ +.+....... . ..... ++..|+.++.++.|+.||..+|+.
T Consensus 247 -~~g~l~~~d~~tG------------~~~w~~~~~~--~---------~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~- 299 (376)
T 3q7m_A 247 -YNGNLTALDLRSG------------QIMWKRELGS--V---------NDFIV--DGNRIYLVDQNDRVMALTIDGGVT- 299 (376)
T ss_dssp -TTSCEEEEETTTC------------CEEEEECCCC--E---------EEEEE--ETTEEEEEETTCCEEEEETTTCCE-
T ss_pred -cCcEEEEEECCCC------------cEEeeccCCC--C---------CCceE--ECCEEEEEcCCCeEEEEECCCCcE-
Confidence 7999999999988 5554443211 0 01222 355666777888999999988752
Q ss_pred CCcceeeeeeee------ccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 524 ASTRMDYIAEFT------VTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 524 ~~~~~~~i~~f~------~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
+..+. ...+.+ .+.. -.+.+.+|.|++||..++++.
T Consensus 300 -------~w~~~~~~~~~~~~~~~--~~~~-l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 300 -------LWTQSDLLHRLLTSPVL--YNGN-LVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp -------EEEECTTTTSCCCCCEE--ETTE-EEEECTTSEEEEEETTTCCEE
T ss_pred -------EEeecccCCCcccCCEE--ECCE-EEEEeCCCeEEEEECCCCcEE
Confidence 11111 111221 1211 122456789999999999875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-06 Score=97.29 Aligned_cols=222 Identities=9% Similarity=-0.001 Sum_probs=132.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEc-----CCeEEEEECCCCc-eEEecc------CCCCeEEEEEeeCC-CCEEEEEE---
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLK-----LGNIRILNIITAL-RSLLRG------HTQRVTDMAFFAED-VHLLASAS--- 277 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~-----DG~IrIWd~~~~~-~~~l~~------H~~~V~slaf~s~d-g~~LaSgs--- 277 (1395)
+|...+.+++|+++|+++++-.. ++.|.+||+.++. +..+.. +...+.+++| .++ +..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v-d~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV-DLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE-ETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE-ecCCCEEEEEcCccC
Confidence 46678999999999987666544 5789999999885 444432 2345789999 654 55556655
Q ss_pred CCCcEEEEECCCCCCCCCCcc---cc---cce-E--EEEEEecC------CCCCccEEEEeCCCCeEEEEEeCC-eEEEE
Q 039790 278 VDGRFFIWNITEGPDEEDKPQ---IL---GKI-V--VAIQILAD------GDSVHPRVCWHPHKQEILMLAIGN-RILKI 341 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~---~~---~~~-i--~~l~~~~~------~~~~v~~v~~sp~~~~lla~g~~~-~ii~~ 341 (1395)
.++.|++||+.+++....... .. ... + ..+..... .......++|++++..++++...+ .+.++
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 678999999987762111100 00 000 0 00000000 012346799999998888776654 66666
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
+........ . ........+..+ ++.+....++++++| +++++...++.|.+||..+|+...........
T Consensus 223 ~~~~~~~~~-~--------~~~~~~~~~~~~-g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~ 291 (343)
T 2qe8_A 223 KSADLSNLQ-L--------TDAELGSKIERY-SEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLS 291 (343)
T ss_dssp EHHHHTCTT-C--------CHHHHHTTCEEE-EECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGS
T ss_pred EHHHhcCCC-C--------ChhhhhcceEec-ccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCcee
Confidence 542111000 0 000000001122 344456779999998 88899888999999998667643333322123
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+.+|+|. ++|.+++++. ..+.+.+|
T Consensus 292 ~p~~va~~----~~g~l~v~~~-~~~~~~~f 317 (343)
T 2qe8_A 292 WTDSFNFG----SDGYLYFDCN-QLHHSAPL 317 (343)
T ss_dssp CEEEEEEC----TTSCEEEEEC-CGGGSGGG
T ss_pred cCCeeEEC----CCCcEEEEeC-cccccccc
Confidence 78999998 8888777754 44444333
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.51 E-value=9.5e-05 Score=87.21 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=130.3
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.++..|+.++.+|.|..||..+|... .+...........+ .+..++.++.+|.|+.+|..+|+...
T Consensus 101 ~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W---------- 167 (376)
T 3q7m_A 101 VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKW---------- 167 (376)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEE----------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEE----------
Confidence 35667888899999999999988543 33332222222333 24578888899999999999987211
Q ss_pred EEEEEecCCC--CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeEE
Q 039790 305 VAIQILADGD--SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITE 381 (1395)
Q Consensus 305 ~~l~~~~~~~--~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~s 381 (1395)
......... ......... ++.++++..++.++.++...... .|....... ........+ ......
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~--~w~~~~~~~----~~~~~~~~~~~~~~~p--- 235 (376)
T 3q7m_A 168 -TVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQM--IWQQRISQA----TGSTEIDRLSDVDTTP--- 235 (376)
T ss_dssp -EEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCE--EEEEECCC---------------CCCCCC---
T ss_pred -EEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcE--EEEEecccC----CCCcccccccccCCCc---
Confidence 111100000 000111222 34566666677788877643211 010000000 000000000 000111
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
.+. + ..++.++.++.|..+|..+|+.+..... + ....+... +..|+++. .++.|..||..++
T Consensus 236 -~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~-~~~~~~~~------~~~l~~~~-~~g~l~~~d~~tG---- 297 (376)
T 3q7m_A 236 -VVV--N-GVVFALAYNGNLTALDLRSGQIMWKREL--G-SVNDFIVD------GNRIYLVD-QNDRVMALTIDGG---- 297 (376)
T ss_dssp -EEE--T-TEEEEECTTSCEEEEETTTCCEEEEECC--C-CEEEEEEE------TTEEEEEE-TTCCEEEEETTTC----
T ss_pred -EEE--C-CEEEEEecCcEEEEEECCCCcEEeeccC--C-CCCCceEE------CCEEEEEc-CCCeEEEEECCCC----
Confidence 111 3 4677788899999999999998877653 2 35555553 44555545 7899999999988
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-........... .... .+..|+.++.+|.|++||..+|+
T Consensus 298 --------~~~w~~~~~~~~~~~--------~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 298 --------VTLWTQSDLLHRLLT--------SPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp --------CEEEEECTTTTSCCC--------CCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred --------cEEEeecccCCCccc--------CCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 555444421111100 1111 24567778889999999998875
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-05 Score=83.37 Aligned_cols=229 Identities=11% Similarity=0.001 Sum_probs=139.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE------EeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 228 RNYICYGLKLGNIRILNIITALRS------LLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~------~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
|.+|..+.. +.|+.+++++.... .+......+.+++| .++ +.++++...++.|.++++..+..
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~-d~~~~~ly~~d~~~~~I~~~~~~g~~~-------- 70 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF-DCVDKVVYWTDISEPSIGRASLHGGEP-------- 70 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE-ETTTTEEEEEETTTTEEEEEESSSCCC--------
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEE-ecCCCEEEEEECCCCEEEEEecCCCCc--------
Confidence 345666554 57889998875321 22222345789999 664 45555666678999999876431
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
..+..........++++++++.++++... +.|.+++...... ...........
T Consensus 71 ------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------------------~~~~~~~~~~P 124 (267)
T 1npe_A 71 ------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--------------------RVLFDTGLVNP 124 (267)
T ss_dssp ------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSE
T ss_pred ------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--------------------EEEEECCCCCc
Confidence 11222222355689999988778777654 5666666432110 11121122467
Q ss_pred EEEEEecCCCcEEEEEeC--CCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 380 TELSMCQWLTTRLASASL--DGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~--Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..++++++++.++++... .+.|..+++.. .....+. ..-. ....++|+ +++.+|..+....+.|.++|+..
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~-~P~gia~d----~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLG-LPNGLTFD----AFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCC-CCcEEEEc----CCCCEEEEEECCCCEEEEEecCC
Confidence 899999976455555433 46888888753 3333332 2223 68999999 88887777676789999999875
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .....+.... . ...+++. ++.++++....+.|+.++..+|+
T Consensus 199 ~------------~~~~~~~~~~-~---------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 199 P------------GRRKVLEGLQ-Y---------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp E------------EEEEEEECCC-S---------EEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred C------------ceEEEecCCC-C---------ceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 4 3222222111 1 0135554 56666777677899999987653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-05 Score=90.59 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=137.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+..|..|+.+|.|..||........+..+...+.++.+ ..++. |..++.++.|+.||.. ++ .+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~-~~~g~-l~vgt~~~~l~~~d~~-g~--------------~~ 169 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIV-SEDGT-IYVGSNDNYLYAINPD-GT--------------EK 169 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEE-CTTSC-EEEECTTSEEEEECTT-SC--------------EE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEE-cCCCE-EEEEcCCCEEEEECCC-CC--------------Ee
Confidence 55678888899999999983334444445555677777 55665 5567788999999988 65 11
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.........+..+.+..++. +++++ +.++.++ .. +.. ...+......+.++.+.++
T Consensus 170 ~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~-g~~-------------------~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3hxj_A 170 WRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PD-GTE-------------------KWNFYAGYWTVTRPAISED 225 (330)
T ss_dssp EEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TT-SCE-------------------EEEECCSSCCCSCCEECTT
T ss_pred EEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CC-CcE-------------------EEEEccCCcceeceEECCC
Confidence 11222234455666666664 44444 8888887 22 211 2222333456778888887
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
| .|..++.++.|..|| .++..+..+..... .+.++.+. .+|...+ +. .++.|..||. ++
T Consensus 226 g--~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~-~~~~~~~~----~~g~l~v-~t-~~ggl~~~d~-~g---------- 284 (330)
T 3hxj_A 226 G--TIYVTSLDGHLYAIN-PDGTEKWRFKTGKR-IESSPVIG----NTDTIYF-GS-YDGHLYAINP-DG---------- 284 (330)
T ss_dssp S--CEEEEETTTEEEEEC-TTSCEEEEEECSSC-CCSCCEEC----TTSCEEE-EC-TTCEEEEECT-TS----------
T ss_pred C--eEEEEcCCCeEEEEC-CCCCEeEEeeCCCC-ccccceEc----CCCeEEE-ec-CCCCEEEECC-CC----------
Confidence 6 456677788898897 56777777765544 55666665 5665444 34 7889999995 55
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+..+......+ ..+....+|.++ .++.+|.+++.....
T Consensus 285 --~~~~~~~~~~~~~---------~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 285 --TEKWNFETGSWII---------ATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp --CEEEEEECSSCCC---------SCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred --cEEEEEEcCCccc---------cceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 5555555433222 235666777755 478899999887654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00024 Score=79.51 Aligned_cols=206 Identities=9% Similarity=-0.008 Sum_probs=132.7
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
..+.+++|++++.+|+.+ ..++.|.+++..++....+. ..-.....|+| .++ +.++++....+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~-d~~~~~lyv~d~~~~~I~~~~~~g~~~- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIAL-DHLGRTIFWTDSQLDRIEVAKMDGTQR- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEE-EecCCeEEEEECCCCEEEEEEcCCCCE-
Confidence 356789999977666655 45789999999876543332 22356889999 665 45555556678999999874320
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..+..........++++++++.++++... +.|.+++...... ..
T Consensus 114 -------------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------------------~~ 160 (267)
T 1npe_A 114 -------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------------------RI 160 (267)
T ss_dssp -------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------------------EE
T ss_pred -------------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------------------EE
Confidence 01112222345689999988888877654 4666666422110 11
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.....-.....++|+++++.++++-...+.|.++|...+.....+.+. . ....+++. +.+|+.+...++.|.
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d------~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY------GKNLYYTDWKTNSVI 232 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE------TTEEEEEETTTTEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe------CCEEEEEECCCCeEE
Confidence 111223467899999987556666667789999998765443344332 2 45677763 445555554678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEec
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
++|..++ +.+.++..
T Consensus 233 ~~d~~~g------------~~~~~i~~ 247 (267)
T 1npe_A 233 AMDLAIS------------KEMDTFHP 247 (267)
T ss_dssp EEETTTT------------EEEEEECC
T ss_pred EEeCCCC------------CceEEEcc
Confidence 9999887 77777754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-05 Score=91.53 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=143.7
Q ss_pred EEe--cCCCEEEEE-EcCCeEEEEECCCC----c-eEEec------cCC-CCeEEEEEeeCCCCEEEEEECC------Cc
Q 039790 223 QIA--VNRNYICYG-LKLGNIRILNIITA----L-RSLLR------GHT-QRVTDMAFFAEDVHLLASASVD------GR 281 (1395)
Q Consensus 223 a~S--pdg~~LasG-s~DG~IrIWd~~~~----~-~~~l~------~H~-~~V~slaf~s~dg~~LaSgs~D------gt 281 (1395)
.++ .++++|+.. ..++.|+|+|+.+. . ..++. .+. ..-..+.+ .++| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~-~pdG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC-GPDA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE-CSSC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE-CCCe-EEEEcCCCcCCCCCCe
Confidence 346 788887665 56789999999754 2 22331 111 13345566 7888 88887776 78
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-------------------eCCeEEEEE
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-------------------IGNRILKID 342 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-------------------~~~~ii~~d 342 (1395)
|.++|..+++ .+..+..-.......+.+-|+|+++.++++. .++.|.+|+
T Consensus 166 v~vlD~~T~~-----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 166 ILMLDHYSFE-----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEEECTTTCC-----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEEECCCCe-----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 9999999887 1111111112234456789999998666663 267788887
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcc--cCCCeEEEEE--ecCCCcEEEEEe-----CCCcEEEEeCCCCc--e
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGK--HDGEITELSM--CQWLTTRLASAS-----LDGTVKIWDDRKST--P 411 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slaf--spdg~~~LaSgs-----~Dg~IrIWDl~sg~--~ 411 (1395)
... ++. +..+.- .......|.| +|++...++++- .+++|.+|....|. .
T Consensus 235 ~~~-~k~-------------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~ 294 (462)
T 2ece_A 235 LRK-RKR-------------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA 294 (462)
T ss_dssp TTT-TEE-------------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred CCC-CcE-------------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence 643 111 222221 1123445555 999844444555 67788877655442 2
Q ss_pred eEEe--cCC---------------CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 412 LAVL--RPY---------------DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 412 l~tl--~~h---------------~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
++.+ ... .+..+..|.++ +||++|.++.-..+.|.+||+... ...+.+..
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS----~DGrfLYVSnrg~d~VavfdV~d~---------~~~~lv~~ 361 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS----LDDKFLYLSLWGIGEVRQYDISNP---------FKPVLTGK 361 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----TTSCEEEEEETTTTEEEEEECSST---------TSCEEEEE
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEEC----CCCCEEEEEeCCCCEEEEEEecCC---------CCcEEEEE
Confidence 2221 110 01257899999 999999998878899999999643 33466666
Q ss_pred EeccCccc-----ccccccccceEEEEeCCCCEEEEEe
Q 039790 475 LELKSSAE-----LRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 475 l~~h~~~i-----~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+...+... ........-+.+.+++||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 65432100 0000000123589999999888776
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-05 Score=99.21 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=140.3
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-EEeccC-C----CCeEE-EEEeeCCCCEEEEEEC------CCcEEEEECCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALR-SLLRGH-T----QRVTD-MAFFAEDVHLLASASV------DGRFFIWNITEGPDE 293 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~-~~l~~H-~----~~V~s-laf~s~dg~~LaSgs~------DgtV~IWdl~tg~~~ 293 (1395)
++..|++++.|+.|..||..+|.. -.+..+ . ..+.+ ..+ .++ .++.++. +|.|+.||..+|+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEECCCCcEE
Confidence 467888889999999999999853 344333 1 12221 122 134 4444443 799999999999832
Q ss_pred CCCcccccceEEEEEEec-----------------------------CCCCCccEEEEeCCCCeEEEEEeCC--------
Q 039790 294 EDKPQILGKIVVAIQILA-----------------------------DGDSVHPRVCWHPHKQEILMLAIGN-------- 336 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~-----------------------------~~~~~v~~v~~sp~~~~lla~g~~~-------- 336 (1395)
. .+.... .+......+.++++++.+++...++
T Consensus 204 W-----------~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 204 W-----------RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp E-----------EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred E-----------EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCC
Confidence 1 111111 0111223578888887777655432
Q ss_pred -----------eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-------CCeEEEEEecCCC--cEEEEEe
Q 039790 337 -----------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-------GEITELSMCQWLT--TRLASAS 396 (1395)
Q Consensus 337 -----------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-------~~V~slafspdg~--~~LaSgs 396 (1395)
.++.+|... ++. .| . .....|+ .....+.+..+|. .+|+.++
T Consensus 273 ~~~~gd~~~~~sv~AlD~~T-G~~-~W-----------~-----~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~ 334 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDT-GKY-KW-----------H-----YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP 334 (677)
T ss_dssp STTCCCCTTTTEEEEECTTT-CCE-EE-----------E-----EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC
T ss_pred CccCCCCeeeEEEEEEECCC-CCE-EE-----------E-----EecCCCcccccccCCCcEEEecccCCcEeeEEEEEC
Confidence 255554432 211 01 0 0111121 1222233334552 4789999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCC----------CCe------------------------eEEEEeecCCCCCcEEEEE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDG----------HPV------------------------NCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~----------~~V------------------------~sV~fs~~~~pdg~~L~s~ 442 (1395)
.+|.|+++|..+|+.+..+..... .++ ..++|+ |++.++++.
T Consensus 335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d----p~~~~~yv~ 410 (677)
T 1kb0_A 335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN----PQTGLVYLP 410 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE----TTTTEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc----CCCCEEEEe
Confidence 999999999999999877652210 011 256787 887777764
Q ss_pred ec------------------------------------------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 443 GP------------------------------------------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 443 Gs------------------------------------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.. ..+.|..||+.++ +.+-.+.....
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG------------~~~W~~~~~~~ 478 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ------------KAAWSVEHVSP 478 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT------------EEEEEEEESSS
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC------------cEEeecCCCCC
Confidence 31 1277999999888 66655553321
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. . ...+..+|.+++.++.||.|++||..+|+
T Consensus 479 ~-~---------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 479 W-N---------GGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp C-C---------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred C-c---------CcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 1 1 13345677788888999999999999876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-06 Score=96.82 Aligned_cols=81 Identities=6% Similarity=-0.029 Sum_probs=61.9
Q ss_pred EEEecCCCcEEEEEe---C-----CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec-CCCeEEEE
Q 039790 382 LSMCQWLTTRLASAS---L-----DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP-LNRELKIW 452 (1395)
Q Consensus 382 lafspdg~~~LaSgs---~-----Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~IW 452 (1395)
++|++|+.+++++.. . ++.+.+||+.+++.+.++.... ....++|+ +||++++.+.. .+++|.+|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s----~Dg~~l~va~~~~~~~VsVI 342 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAA----QDGASDNYANSAGTEVLDIY 342 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEEC----CSSSCEEEEEETTTTEEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEEC----CCCCEEEEEccCCCCeEEEE
Confidence 689999854444443 2 2356699999999999887554 58999999 99986555554 48999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
|+.++ +.+.++.....
T Consensus 343 D~~t~------------kvv~~I~vg~~ 358 (368)
T 1mda_H 343 DAASD------------QDQSSVELDKG 358 (368)
T ss_dssp ESSSC------------EEEEECCCCSC
T ss_pred ECCCC------------cEEEEEECCCC
Confidence 99988 88888875543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-07 Score=110.84 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=87.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc
Q 039790 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348 (1395)
Q Consensus 269 dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~ 348 (1395)
++.+|++++.||.|+.||..+|+. +..+.. ..+.+..+..++..+++.+.++.++.|+... ++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----------~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----------KWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC------C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------EEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cc
Confidence 578899999999999999999882 222221 2233333444554444445677777776532 21
Q ss_pred cccccCCCCCccCccccccceEEEcccC-CCeE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHD-GEIT-ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~-slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
. +..+..+. ..+. +..+. ++ ..|++|+.|+.|+.||..+|+.+..+..+.. +
T Consensus 71 ~-------------------~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-----~ 124 (369)
T 2hz6_A 71 G-------------------LTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-----D 124 (369)
T ss_dssp C-------------------SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------
T ss_pred e-------------------eeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCCc-----c
Confidence 1 00111010 0000 00111 23 4677888999999999999999888876532 3
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC---CEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG---LFL 503 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg---~~L 503 (1395)
.++ |++..|++++ .|+.|+.||.+++ +.+..+...... ...+..++ ..+
T Consensus 125 ~~~----p~~~~v~~~~-~dg~v~a~d~~tG------------~~~W~~~~~~~~-----------~~~~~~~~~~~~~v 176 (369)
T 2hz6_A 125 SLS----PSTSLLYLGR-TEYTITMYDTKTR------------ELRWNATYFDYA-----------ASLPEDDVDYKMSH 176 (369)
T ss_dssp ------------EEEEE-EEEEEECCCSSSS------------SCCCEEEEEEEC-----------CBCCCCCTTCCCCE
T ss_pred ccc----ccCCEEEEEe-cCCEEEEEECCCC------------CEEEeEeccccc-----------CccccCCccccceE
Confidence 455 6777888765 8999999999988 333333221100 01122221 345
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 039790 504 LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 504 aSgs~Dg~I~iWdl~~g~ 521 (1395)
+.++.||.|+.||..+|+
T Consensus 177 ~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 177 FVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEETSCEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCc
Confidence 667889999999998875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=92.64 Aligned_cols=240 Identities=8% Similarity=-0.070 Sum_probs=135.0
Q ss_pred eEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 239 NIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 239 ~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
.|.++|..+++ +..+..-..+ .+.| ++|+++++.+. .+++|.+||+.+++ .+..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~-spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-----------vv~~I 112 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVA-GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-----------PIADI 112 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEE-CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-----------EEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEE-CCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-----------EEEEE
Confidence 88899999985 4455433345 7999 99999888886 37899999999987 33333
Q ss_pred EEecCC----CCCccEEEEeCCCCeEEEEEeC--CeEEE--EEcCCCCccc---c--ccCCCCCccCccccccceEEEcc
Q 039790 308 QILADG----DSVHPRVCWHPHKQEILMLAIG--NRILK--IDSNRVGKGE---R--FSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 308 ~~~~~~----~~~v~~v~~sp~~~~lla~g~~--~~ii~--~d~~~~~~~~---~--~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+-+.. ......+.++|++++++++..+ +.+.+ ||........ + +..++.........-..+..+..
T Consensus 113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEEC
Confidence 322111 1234579999999999888753 44555 5553310000 0 00000000000000000001100
Q ss_pred cC-----CCeE------------EEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCC------CC---CCeeEE
Q 039790 375 HD-----GEIT------------ELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPY------DG---HPVNCV 426 (1395)
Q Consensus 375 h~-----~~V~------------slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h------~~---~~V~sV 426 (1395)
-. +.+. -.. ++++ ..++..+. +.|.+.|+..+. .+..+... .+ .....+
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEE-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccccCCeEEEEeeeeeeCCCCccc-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 00 0000 002 4444 33333344 788888876532 22222211 01 012237
Q ss_pred EEeecCCCCCcEEEEEec---C-----CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 427 TFLIGPHPQHIVLITGGP---L-----NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs---~-----Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+|+ +|+++++++.. . ++.+.+||+.+. +.+.++...... ..++|++
T Consensus 270 ~~s----~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~vg~~p----------~gi~~s~ 323 (368)
T 1mda_H 270 AKL----KNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISNGHDS----------DAIIAAQ 323 (368)
T ss_dssp EEE----TTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEEEEEE----------CEEEECC
T ss_pred EEc----CCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEECCCCc----------ceEEECC
Confidence 898 99988887542 1 235669999988 777777654421 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +++++. .++.|.+||+.+++
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCEEEEEccCCCCeEEEEECCCCc
Confidence 997 667777 59999999998754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-05 Score=98.35 Aligned_cols=206 Identities=11% Similarity=0.003 Sum_probs=108.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCce-EEeccCCC----------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALR-SLLRGHTQ----------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~----------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
+..|++++.++.|+-||..+|+. -.+..+.. .+ ..+++ ++..|+.++.|+.|+.||..+|+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~--- 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQR--- 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCE---
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCE---
Confidence 55677778889999999998853 33332211 01 12333 356788899999999999999982
Q ss_pred CcccccceEEEEEEecCCC--CCcc-EEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccC--CCCCcc----
Q 039790 296 KPQILGKIVVAIQILADGD--SVHP-RVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSA--EEPLKC---- 360 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~--~~v~-~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~--~~~~~~---- 360 (1395)
+.......+.. ..+. ...+ .++.+++++. ++.++.+|.......-.+.. ..+...
T Consensus 144 --------~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 213 (689)
T 1yiq_A 144 --------AWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGK 213 (689)
T ss_dssp --------EEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSH
T ss_pred --------eeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccc
Confidence 11221110100 0110 0011 1334444432 35566666543221100000 000000
Q ss_pred ------CccccccceEEE-cccCCCeEEEEEecCCCcEEEEEeCCCc-------------------EEEEeCCCCceeEE
Q 039790 361 ------PVDELINGVQLV-GKHDGEITELSMCQWLTTRLASASLDGT-------------------VKIWDDRKSTPLAV 414 (1395)
Q Consensus 361 ------~~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs~Dg~-------------------IrIWDl~sg~~l~t 414 (1395)
..|.- ..... .++......+++++++ .+|+.++.++. |..||..+|+.+..
T Consensus 214 ~~~~~~~~~~g--~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 214 GMEIAAKTWFG--DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp HHHHHHTTCCS--STHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred cccccccccCC--ceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 00000 00000 0112222367888887 68888887764 99999999999988
Q ss_pred ecC--CCC------CCeeEEEEeecCCCCCc---EEEEEecCCCeEEEEECCCC
Q 039790 415 LRP--YDG------HPVNCVTFLIGPHPQHI---VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 415 l~~--h~~------~~V~sV~fs~~~~pdg~---~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.. |.. ..+...... .+|+ .|+. ++.+|.|++||..+|
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~----~~G~~~~~v~~-~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELP----IDGKPRKVLMQ-APKNGFFYVIDRATG 339 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEE----ETTEEEEEEEE-CCTTSEEEEEETTTC
T ss_pred eecCCcccccccCCCCcEEEeec----cCCcEEEEEEE-ECCCCeEEEEECCCC
Confidence 764 321 011112222 2454 5555 559999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=93.48 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=59.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 399 g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
|.|..||+.+|+.+..+... . .+....+. .++..++++ +.|+.|++||.+++ +.+.++...
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~----~~g~~v~~g-~~dg~l~a~D~~tG------------~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-S-PWNGGTLT----TAGNVVFQG-TADGRLVAYHAATG------------EKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-S-SCCCCEEE----ETTTEEEEE-CTTSEEEEEETTTC------------CEEEEEECS
T ss_pred cEEEEEeCCCCcEEeecCCC-C-CCcCcceE----eCCCEEEEE-CCCCcEEEEECCCC------------ceeeeeeCC
Confidence 78999999999998888643 2 45555666 567777775 49999999999999 889888866
Q ss_pred CcccccccccccceEEEEeCCCCEEEEE
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
...... -+.+..+|+.+++.
T Consensus 518 ~~~~~~--------p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 518 TGVVAA--------PSTYMVDGRQYVSV 537 (677)
T ss_dssp SCCCSC--------CEEEEETTEEEEEE
T ss_pred CCcccC--------CEEEEeCCEEEEEE
Confidence 543221 36667788755443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00016 Score=81.15 Aligned_cols=208 Identities=10% Similarity=-0.024 Sum_probs=131.6
Q ss_pred cceeeeeCCC--CCEEEEEEecCCCEEEEEEc--CCeEEEEECCCCceE-Eec-cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDP--GLVLGRQIAVNRNYICYGLK--LGNIRILNIITALRS-LLR-GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~--~~V~~va~Spdg~~LasGs~--DG~IrIWd~~~~~~~-~l~-~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
+.+.++. |. ....++.|++|+.+.++.+. ++.|+++|..++.+. .+. +.......+++ . ++.+.++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~-~-g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL-L-NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE-E-TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE-e-CCEEEEEEecCC
Confidence 3444553 33 34689999998754444443 589999999998533 322 12223345666 2 334555555688
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|..+.+ .+..+.. + ... ...++++++.++++..++.+..+|.......
T Consensus 87 ~v~viD~~t~~-----------v~~~i~~-g--~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----------- 139 (266)
T 2iwa_A 87 IGFIYDRRTLS-----------NIKNFTH-Q--MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLI----------- 139 (266)
T ss_dssp EEEEEETTTTE-----------EEEEEEC-C--SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEE-----------
T ss_pred EEEEEECCCCc-----------EEEEEEC-C--CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEE-----------
Confidence 99999999876 2222221 1 111 1335557888888776777777776442211
Q ss_pred CccccccceEEEccc---CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCeeE
Q 039790 361 PVDELINGVQLVGKH---DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPVNC 425 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h---~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V~s 425 (1395)
. ......+ -..++.+.|. +| .+++....++.|.+.|..+++.+.++... .....+.
T Consensus 140 ------~-~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 140 ------K-KHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp ------E-EEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred ------E-EEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 0 0111111 1246788888 66 66666667899999999999999988632 1125689
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|+ |+++.|+++|...+.|.+.++...
T Consensus 211 Ia~~----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 211 IAWD----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEE----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEc----CCCCEEEEECCCCCeEEEEEEecc
Confidence 9999 998888777878888888887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.1e-05 Score=94.36 Aligned_cols=251 Identities=9% Similarity=-0.015 Sum_probs=149.4
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCc-eEEec-cCCCCeEEEEEee-CCCCEEEEEE------------------CCCcEE
Q 039790 226 VNRNYICYGLK-LGNIRILNIITAL-RSLLR-GHTQRVTDMAFFA-EDVHLLASAS------------------VDGRFF 283 (1395)
Q Consensus 226 pdg~~LasGs~-DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s-~dg~~LaSgs------------------~DgtV~ 283 (1395)
+||++|+.... ++.|.+.|+.+.+ ...+. ........++|.. +++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38899888765 5679999999974 33222 1234578888855 8999998885 245788
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---------------eEEEEEcCCCCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---------------RILKIDSNRVGK 348 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---------------~ii~~d~~~~~~ 348 (1395)
++|..+.+ .+..+.+-+ ....+.+++++.++++++.+. .+.+++..+...
T Consensus 179 vID~~t~~-----------v~~qI~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 179 AVDADKWE-----------VAWQVLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp EEETTTTE-----------EEEEEEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred EEECCCCe-----------EEEEEEeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 99988765 222232211 234578999999998888653 344444322110
Q ss_pred cccccCCCCCc----cCcccccc----c-eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------
Q 039790 349 GERFSAEEPLK----CPVDELIN----G-VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--------- 410 (1395)
Q Consensus 349 ~~~~s~~~~~~----~~~~~~~~----~-~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--------- 410 (1395)
+..++... +.+-+..+ . +..+. -.....++.|+|||...++++..+.+|.++|+.+.+
T Consensus 244 ---~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 244 ---AIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp ---HHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred ---eccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 00011100 00000000 1 11221 123456799999995566666678999999998653
Q ss_pred ---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 411 ---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 411 ---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
.+..+.. +.....++|+ ++| ++.++...|++|.+||+.+..+.+ ...+....+.++..|-.....
T Consensus 320 ~~~v~~~v~v--G~gP~h~aF~----~dG-~aY~t~~ldsqV~kwdi~~a~~~~--~g~~~~~vi~kidV~yqpGh~--- 387 (595)
T 1fwx_A 320 RSAVVAEPEL--GLGPLHTAFD----GRG-NAYTSLFLDSQVVKWNIEDAIRAY--AGEKVDPIKDKLDVHYQPGHL--- 387 (595)
T ss_dssp GGGEEECCBC--CSCEEEEEEC----TTS-EEEEEETTTTEEEEEEHHHHHHHH--HTCSCCCEEEEEECSSCEEEE---
T ss_pred ccceEEEcCC--CCCcceEEEC----CCC-eEEEEEecCCcEEEEEhhHhhhhh--cccccceeEEEeecccccccc---
Confidence 3334432 2368999999 999 666667799999999997620000 001123678888776432100
Q ss_pred cccceEEEEeCCCCEEEEEeC
Q 039790 488 AFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.......+++||++|++...
T Consensus 388 -~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 388 -KTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp -EETTTTSTTCCSSEEEEEES
T ss_pred -eeccceEeCCCCCEEEEcCC
Confidence 00011345799999988763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00013 Score=84.20 Aligned_cols=241 Identities=8% Similarity=-0.032 Sum_probs=140.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------------------CCCCeEEEEEeeC-CCCEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------------------HTQRVTDMAFFAE-DVHLLAS 275 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------------------H~~~V~slaf~s~-dg~~LaS 275 (1395)
....+++|.++|++++++..++.|..||..++....+.. ....+..|++ .+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~-~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY-NLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE-ETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE-cCCCCc-EEE
Confidence 345677899999978888889999999988765444321 1135789999 65 555 455
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEE-Eec-CCCCCccEEEEeC-CCCeEEEEEeC-----------------
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-ILA-DGDSVHPRVCWHP-HKQEILMLAIG----------------- 335 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-~~~-~~~~~v~~v~~sp-~~~~lla~g~~----------------- 335 (1395)
+...+.|..+|..++.. ..+. ... ........+++.+ ++. ++++...
T Consensus 97 ~d~~~~i~~~d~~~g~~------------~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA------------TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EETTTEEEEECTTCEEC------------EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EECCCCEEEEeCCCCEE------------EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCC
Confidence 55555688888765431 0110 011 1112345688888 764 5444332
Q ss_pred -CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--ee
Q 039790 336 -NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PL 412 (1395)
Q Consensus 336 -~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l 412 (1395)
+.+++++.... . +..+...-...+.|+|++++..++++-+.++.|.+||+.... ..
T Consensus 164 ~g~v~~~d~~~~-~--------------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~ 222 (322)
T 2fp8_A 164 TGRLIKYDPSTK-E--------------------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA 222 (322)
T ss_dssp CEEEEEEETTTT-E--------------------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE
T ss_pred CceEEEEeCCCC-E--------------------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc
Confidence 34555543211 0 111111123456799999983344555667899999987521 12
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecC----------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL----------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~----------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i 482 (1395)
..+....+ ...+++. ++|.++++.. . .+.|..+|.. + +.+..+....+..
T Consensus 223 ~~~~~~~g--P~gi~~d----~~G~l~va~~-~~~~~~~~~~~~~~v~~~d~~-G------------~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 223 EVLVKIPN--PGNIKRN----ADGHFWVSSS-EELDGNMHGRVDPKGIKFDEF-G------------NILEVIPLPPPFA 282 (322)
T ss_dssp EEEEECSS--EEEEEEC----TTSCEEEEEE-EETTSSTTSCEEEEEEEECTT-S------------CEEEEEECCTTTT
T ss_pred ceEEeCCC--CCCeEEC----CCCCEEEEec-CcccccccCCCccEEEEECCC-C------------CEEEEEECCCCCc
Confidence 22221222 7788998 8998776654 3 4567788763 4 6666666543221
Q ss_pred ccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 483 LRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.. ....+++ .+|.+++++..++.|..+++..
T Consensus 283 ----~~-~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 283 ----GE-HFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ----TS-CCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ----cc-cceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 01 1123444 4677777777888999998754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.1e-05 Score=86.54 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=129.9
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
+.++.+..+|. |..|+.+ |..||.....+..+..+........+ . +..|..++.++.|+.||.. ++
T Consensus 62 ~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~-~--~~~l~v~t~~~~l~~~d~~-g~------- 127 (330)
T 3hxj_A 62 ECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTI-F--EDILYVTSMDGHLYAINTD-GT------- 127 (330)
T ss_dssp EECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC-----CCEEE-E--TTEEEEECTTSEEEEECTT-SC-------
T ss_pred ccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCcccCceE-E--CCEEEEEecCCEEEEEcCC-CC-------
Confidence 44555555665 4455544 88888633333333333333444555 3 5567778889999999988 65
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
...........+..+...+++. +++++.++.+..++.. +.. ...+......
T Consensus 128 -------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~-------------------~~~~~~~~~~ 178 (330)
T 3hxj_A 128 -------EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTE-------------------KWRFKTNDAI 178 (330)
T ss_dssp -------EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCE-------------------EEEEECSSCC
T ss_pred -------EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCE-------------------eEEEecCCCc
Confidence 1111122233445566665554 6666666888888764 221 1222223445
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+.++.+..++ .+ ..++ +.|..|| .+++.+..+..... .+.++.+. ++|...+. . .++.|..||. ++
T Consensus 179 ~~~~~~d~~g-~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~----~~g~l~v~-t-~~~gl~~~~~-~g- 244 (330)
T 3hxj_A 179 TSAASIGKDG-TI-YFGS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAIS----EDGTIYVT-S-LDGHLYAINP-DG- 244 (330)
T ss_dssp CSCCEECTTC-CE-EEES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEEC----TTSCEEEE-E-TTTEEEEECT-TS-
T ss_pred eeeeEEcCCC-EE-EEEe--CEEEEEC-CCCcEEEEEccCCc-ceeceEEC----CCCeEEEE-c-CCCeEEEECC-CC-
Confidence 6677777776 44 4444 7899999 78888877776554 78899987 77765553 4 6788888874 34
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..+..+........ .+.+..+|.+ ..++.++.|+.+|.
T Consensus 245 -----------~~~~~~~~~~~~~~---------~~~~~~~g~l-~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 245 -----------TEKWRFKTGKRIES---------SPVIGNTDTI-YFGSYDGHLYAINP 282 (330)
T ss_dssp -----------CEEEEEECSSCCCS---------CCEECTTSCE-EEECTTCEEEEECT
T ss_pred -----------CEeEEeeCCCCccc---------cceEcCCCeE-EEecCCCCEEEECC
Confidence 44444443322211 2444556654 45667888998884
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0013 Score=78.34 Aligned_cols=239 Identities=8% Similarity=-0.038 Sum_probs=143.4
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
.|.+..+ ..+|+.+.. ..|+.+++.++....+......+..++|...++.++++-...+.|+.|++..+.
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------- 149 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------- 149 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--------
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--------
Confidence 3444444 345555443 578889988776554444455688999943455566666677889999988654
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
...+..........+++++.++.++.+... +.|.+++...... ...+...-..
T Consensus 150 ------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--------------------~~l~~~~l~~ 203 (386)
T 3v65_B 150 ------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--------------------KVLLWQSLEK 203 (386)
T ss_dssp ------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--------------------EEEECSSCSC
T ss_pred ------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--------------------EEeecCCCCC
Confidence 112222223344568888877777776654 3444443321100 1222333356
Q ss_pred eEEEEEecCCCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 379 ITELSMCQWLTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
...|++.|.++.++++-... +.|..++.........+...-. ....|+|+ +++..|..+-...+.|..+|+...
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd----~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTID----YAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-CEEEEEEE----GGGTEEEEEETTTTEEEEECTTSC
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CeeeEEEe----CCCCEEEEEECCCCEEEEEeCCCC
Confidence 78999998775566665555 7888888764433333332222 68999998 877777776767889999998643
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+...... -..+++ ..+.++++....+.|+.++..+|.
T Consensus 279 ------------~~~~~~~~~~~~---------P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 279 ------------HRKAVISQGLPH---------PFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ------------SCEEEECSSCSS---------EEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ------------eeEEEEECCCCC---------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 111112211111 113566 456677777778888888855554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0021 Score=75.40 Aligned_cols=241 Identities=7% Similarity=-0.036 Sum_probs=145.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
...|.+..++ .+|+.+.. ..|+.+++.+.....+......+..|+|...++.++++-...+.|+.|++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----- 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----- 107 (349)
T ss_dssp SSCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----
T ss_pred CCcccccccC-ceeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----
Confidence 3345555553 35555433 5688888887655444444456889999334555556656678899999886541
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
..+..........+++.+.++.++.+... +.|.+++...... ...+...-
T Consensus 108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--------------------~~l~~~~l 158 (349)
T 3v64_C 108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--------------------KVLLWQSL 158 (349)
T ss_dssp ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECTTC
T ss_pred ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--------------------EEEEeCCC
Confidence 11222222344578888877777777654 5566665432111 12222334
Q ss_pred CCeEEEEEecCCCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 377 GEITELSMCQWLTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.....+++.|.++.++++-... +.|..+++.. .....+....-.....|+|+ +++..|..+-...+.|..+|+.
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d----~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTID----YAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEe----CCCCEEEEEECCCCEEEEEeCC
Confidence 5678999999765666665555 7888888754 33334422222268999999 8777777767678899999986
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. .....+...... -..+++ ..+.++++....+.|+.++..+|.
T Consensus 234 G~------------~~~~~~~~~~~~---------P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 234 GS------------HRKAVISQGLPH---------PFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SC------------SCEEEECSSCSS---------EEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CC------------ceEEEEeCCCCC---------ceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 43 111112111111 113555 356777777778888888755554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0048 Score=80.58 Aligned_cols=322 Identities=9% Similarity=0.009 Sum_probs=178.3
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------CCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------HTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
...|.++....+|.+. .|+.++.|.+||..++....+.. ....|.++.. ..+|.+.+ |+.+ -|.+||.
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM-DSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE-CTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE-cCCCCEEE-EeCC-hhheEcC
Confidence 4568888887777644 45555458899988875544432 1356999988 66776544 4455 5899998
Q ss_pred CCCCCCCCCcccccceEEEEEEec-------CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILA-------DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.++.. ..+.. -....|.++....++. +.++..++++.+++..... ...+....
T Consensus 290 ~~~~~--------------~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~---- 349 (795)
T 4a2l_A 290 GTDSF--------------ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKNIRNIP---- 349 (795)
T ss_dssp TTTEE--------------EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEEECCCT----
T ss_pred CCCeE--------------EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceEEcCCC----
Confidence 76541 11111 1234577788777764 6667777888888753211 00000000
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC-------CCCCeeEEEEeecCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY-------DGHPVNCVTFLIGPH 433 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h-------~~~~V~sV~fs~~~~ 433 (1395)
.. -.-....|.++....+| .|..|+.++-|..||..++......... ....|.+++..
T Consensus 350 ----~~-----~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---- 414 (795)
T 4a2l_A 350 ----YK-----NSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD---- 414 (795)
T ss_dssp ----TS-----SSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE----
T ss_pred ----CC-----CCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc----
Confidence 00 00124569999988876 4556778878999998877644332111 12379999997
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
.+|..|..+. .++-|.+||..++ +.. .+....... . ...+..+....+|.+.++.. +.|+
T Consensus 415 ~~g~~lWigt-~~~Gl~~~d~~~~------------~~~-~~~~~~~~l---~-~~~v~~i~~d~~g~lwigt~--~Gl~ 474 (795)
T 4a2l_A 415 EKKSLVYIGT-HAGGLSILHRNSG------------QVE-NFNQRNSQL---V-NENVYAILPDGEGNLWLGTL--SALV 474 (795)
T ss_dssp TTTTEEEEEE-TTTEEEEEETTTC------------CEE-EECTTTSCC---S-CSCEEEEEECSSSCEEEEES--SCEE
T ss_pred CCCCEEEEEe-CcCceeEEeCCCC------------cEE-EeecCCCCc---C-CCeeEEEEECCCCCEEEEec--Ccee
Confidence 7887344434 6677999998876 322 232111000 0 11223566777888776654 4588
Q ss_pred EEEcCCCCCCCCcceeeeeee----e-ccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeec---------ccceE
Q 039790 514 AIHMDYGPNPASTRMDYIAEF----T-VTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYA---------LDLSQ 577 (1395)
Q Consensus 514 iWdl~~g~~~~~~~~~~i~~f----~-~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~---------~~~~~ 577 (1395)
+|+..++. +..+... . ....+.++...... .++.. +-|..|+..++.+ .+. .....
T Consensus 475 ~~~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 475 RFNPEQRS------FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp EEETTTTE------EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred EEeCCCCe------EEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 89876542 1111100 0 01223333222201 11222 4578888877765 321 12355
Q ss_pred EecCCCCCeecccCCCceEEEeecCCCC
Q 039790 578 CLPPPLENAELEKTDSNATRAFDVANPD 605 (1395)
Q Consensus 578 cl~~s~d~l~~~~sd~~v~~iWD~~tg~ 605 (1395)
|+....++..+-++..++. .||..++.
T Consensus 547 ~i~~d~~g~lWigT~~Gl~-~~d~~~~~ 573 (795)
T 4a2l_A 547 CIYEASNGIIWVGTREGFY-CFNEKDKQ 573 (795)
T ss_dssp EEEECTTSCEEEEESSCEE-EEETTTTE
T ss_pred EEEECCCCCEEEEeCCCce-eECCCCCc
Confidence 6666665533323233554 57776553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0038 Score=81.57 Aligned_cols=325 Identities=8% Similarity=0.048 Sum_probs=175.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
|.++....+|.+.+ |+.++.|..||..++....+. .+...|.+|.. ..++.+.+ |+.++-|++||..++..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~-d~~g~lwi-gt~~~Gl~~~~~~~~~~---- 247 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQ-QSPTRIWV-ATEGAGLFLINPKTKEI---- 247 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEE-EETTEEEE-EEBSSCEEEEETTTTEE----
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEE-cCCCCEEE-EECCCCeEEEeCCCCeE----
Confidence 78888888886544 666556889998877544332 23567888887 55665544 55444589999876541
Q ss_pred cccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 297 PQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
..+... ....|.++....++. +.++.. +++.+++.... ....+..... .
T Consensus 248 ----------~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~-~~~~~~~~~~---------~-- 303 (795)
T 4a2l_A 248 ----------KNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTF-NDLNIYHEGTD-SFASYSSNPV---------E-- 303 (795)
T ss_dssp ----------EEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEES-SCEEEEETTTT-EEEEECCCTT---------S--
T ss_pred ----------EEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeC-ChhheEcCCCC-eEEEEecCCC---------C--
Confidence 111111 134577777777665 444444 47888875321 1100000000 0
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...-....|.++....+| .|..|+.++-|.+||...+.. ..+.. -....|.++... .+|...+. .
T Consensus 304 -~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d----~~g~lWiG-t 374 (795)
T 4a2l_A 304 -NGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVED----KDKNLWIG-T 374 (795)
T ss_dssp -TTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEEC----TTSCEEEE-E
T ss_pred -CCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEEC----CCCCEEEE-E
Confidence 000134579999998887 456677778899998765543 22221 012369999987 77775553 3
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc-cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL-RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.++-|..||..++ ... .+........ ... .-.+..++...+|.+|..|+.++.|+.|+..++..
T Consensus 375 -~~~Gl~~~~~~~~------------~~~-~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 375 -NDGGLNLYNPITQ------------RFT-SYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp -SSSCEEEECTTTC------------CEE-EECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred -CCCCeEEEcCCCC------------cEE-EEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 6767999998765 332 2221110000 000 01223567778888455667777799999876531
Q ss_pred CCCcceeeeee---eeccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeecc---------cceEEecCCCCCeec
Q 039790 523 PASTRMDYIAE---FTVTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYAL---------DLSQCLPPPLENAEL 588 (1395)
Q Consensus 523 ~~~~~~~~i~~---f~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~---------~~~~cl~~s~d~l~~ 588 (1395)
..+.. ......+.++...... .++.. +.|.+|+..++.+..+.. ....|+....++..+
T Consensus 440 ------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 440 ------ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ------EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ------EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 11110 0011223333322201 11222 348889988887655432 234566555555332
Q ss_pred ccCCCceEEEeecCCCCc
Q 039790 589 EKTDSNATRAFDVANPDG 606 (1395)
Q Consensus 589 ~~sd~~v~~iWD~~tg~~ 606 (1395)
-++..++. .||..++..
T Consensus 513 igt~~Gl~-~~~~~~~~~ 529 (795)
T 4a2l_A 513 IGGEEGLS-VFKQEGLDI 529 (795)
T ss_dssp EEESSCEE-EEEEETTEE
T ss_pred EEeCCceE-EEeCCCCeE
Confidence 22234544 567666543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0003 Score=90.14 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=69.0
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCC-----------CCC------------------------eeEEEEeecCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYD-----------GHP------------------------VNCVTFLIGPHPQ 435 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-----------~~~------------------------V~sV~fs~~~~pd 435 (1395)
+|+.++.+|.++++|..+|+.+..+.... +.+ -..++|+ |+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d----p~ 391 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN----PG 391 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE----TT
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC----CC
Confidence 68899999999999999999885443221 000 0125666 65
Q ss_pred CcEEEEE-----------------------------------ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 436 HIVLITG-----------------------------------GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 436 g~~L~s~-----------------------------------Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
...+++. ...+|.|..||+.++ +.+-.+.....
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG------------~~~W~~~~~~~ 459 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ------------KAAWKVPYPTH 459 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT------------EEEEEEEESSS
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC------------cEEEEccCCCC
Confidence 5554431 113478999999888 66555544321
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. ...+...|.+|+.++.|+.|++||..+|+
T Consensus 460 ~~----------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 460 WN----------GGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CC----------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred Cc----------CceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 11 12334567788888999999999998875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00049 Score=76.55 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=119.0
Q ss_pred ceeeeeCCC-CCEEEEEEecCCCEEEEEEcCC--eEEEEECCCCceE-EeccCCCCeEE--EEEeeCCCCEEEEEECCCc
Q 039790 208 PITKYISDP-GLVLGRQIAVNRNYICYGLKLG--NIRILNIITALRS-LLRGHTQRVTD--MAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 208 ~i~~l~~h~-~~V~~va~Spdg~~LasGs~DG--~IrIWd~~~~~~~-~l~~H~~~V~s--laf~s~dg~~LaSgs~Dgt 281 (1395)
.+.+|.... ....++.|+ ++.++.+.+.+| .|+++|+.++++. .+. -....+. +++ . ++.+.+..-.++.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~FgeGit~-~-g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRYFGEGISD-W-KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTCCEEEEEE-E-TTEEEEEESSSSE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCccceeEEEE-e-CCEEEEEEeeCCE
Confidence 344553222 335788898 777666777766 8999999998533 332 2234433 555 2 3344444456889
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+||..+.+ .+..+..- . .-..++ +++..++++..++.+..+|.......
T Consensus 109 v~v~D~~t~~-----------~~~ti~~~--~--eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~------------ 159 (262)
T 3nol_A 109 GFVWNIRNLR-----------QVRSFNYD--G--EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPV------------ 159 (262)
T ss_dssp EEEEETTTCC-----------EEEEEECS--S--CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEE------------
T ss_pred EEEEECccCc-----------EEEEEECC--C--CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEE------------
Confidence 9999999887 22233221 1 112344 46777777766777877776543211
Q ss_pred ccccccceEE-EcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC-----------CCCCeeEEEE
Q 039790 362 VDELINGVQL-VGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY-----------DGHPVNCVTF 428 (1395)
Q Consensus 362 ~~~~~~~~~~-l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h-----------~~~~V~sV~f 428 (1395)
..+.+ ..+.. ..++.+.|. +| .+++..-.+..|.+.|..+|+.+.++... .....+.|+|
T Consensus 160 -----~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 160 -----RTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp -----EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred -----EEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 00111 11112 345677876 56 66666667889999999999999888642 1125689999
Q ss_pred eecCCCCCcEEEEEe
Q 039790 429 LIGPHPQHIVLITGG 443 (1395)
Q Consensus 429 s~~~~pdg~~L~s~G 443 (1395)
+ |+++.|+++|
T Consensus 233 d----p~~~~lfVTG 243 (262)
T 3nol_A 233 D----KEHHRLFVTG 243 (262)
T ss_dssp E----TTTTEEEEEE
T ss_pred c----CCCCEEEEEC
Confidence 9 8888888878
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.011 Score=68.14 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=137.2
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
+|+.+.. ..|+..|+.+.....+.........++| .+ ++.++++-..++.|+.+++.... .+... ..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~-d~~~~~ly~~D~~~~~I~~~~~~g~~--------~~~~~--~~ 70 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDT-EVASNRIYWSDLSQRMICSTQLDRAH--------GVSSY--DT 70 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEE-ETTTTEEEEEETTTTEEEEEEC----------------C--EE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEE-EeCCCEEEEEECCCCcEEEEECCCCC--------CCccc--EE
Confidence 4455444 5689999988754444444567889999 55 45556666667899999987521 00000 11
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+....-.....+++++.++.++.+.. .+.|.+++...... ...+.........+++.|.
T Consensus 71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--------------------~~~~~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPV 130 (316)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--------------------EEEEECTTCCEEEEEEETT
T ss_pred EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--------------------EEEEECCCCCcceEEeCCC
Confidence 12222234467888877777776654 45666665432110 1122223356789999987
Q ss_pred CCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
++.++++.... +.|..+++. |.....+....-.....|+|+ +++..|..+....+.|..+|+...
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d----~~~~~lY~~D~~~~~I~~~d~dg~--------- 196 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG--------- 196 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEe----ccCCEEEEEECCCCeEEEEecCCC---------
Confidence 74555554443 688888875 444444422222278999999 888777776767889999998643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .+.+....... . ....+++. .+.++++....+.|+.++..+|+
T Consensus 197 ---~-~~~~~~~~~~~-----~-~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 197 ---N-RKTILEDEKRL-----A-HPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ---S-CEEEEECTTTT-----S-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ---c-eEEEeecCCcc-----C-CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 1 22221111000 0 01135554 46777777788889998876654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00057 Score=87.51 Aligned_cols=207 Identities=11% Similarity=0.028 Sum_probs=107.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCC----------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQ----------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~----------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
+..|++++.++.|+-+|..+|+.. .+..... .+ ..+++ .+..|+.++.||.|+.+|..+|+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~-- 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAI-- 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEE--
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEe--
Confidence 456777778889999999888532 3322111 01 22344 3567888889999999999999821
Q ss_pred CcccccceEEEEEEecCC-CCCcc-EEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccC--CCCCc-c----
Q 039790 296 KPQILGKIVVAIQILADG-DSVHP-RVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSA--EEPLK-C---- 360 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~-~~~v~-~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~--~~~~~-~---- 360 (1395)
......... ...+. .-.+ .++.++++.. ++.++.+|.......-.+.. ..+.. .
T Consensus 141 ---------W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 209 (668)
T 1kv9_A 141 ---------WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPE 209 (668)
T ss_dssp ---------EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred ---------eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccc
Confidence 111111000 00010 0011 1334444433 25566666533221100100 00000 0
Q ss_pred -----CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-------------------cEEEEeCCCCceeEEec
Q 039790 361 -----PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-------------------TVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 361 -----~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-------------------~IrIWDl~sg~~l~tl~ 416 (1395)
..|.- .....+.++......+++.+++ .+++.++.++ .|..+|..+|+.+..+.
T Consensus 210 ~~~~~~~~~g-~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 210 LREAAKTWQG-DQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHTTCCS-SCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccCCc-cceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 00000 0000001122223457888877 6777777665 39999999999998886
Q ss_pred C--CCC------CCeeEEEEeecCCCCCc---EEEEEecCCCeEEEEECCCC
Q 039790 417 P--YDG------HPVNCVTFLIGPHPQHI---VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 417 ~--h~~------~~V~sV~fs~~~~pdg~---~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
. |.. .++....+. .+|+ .|+. ++.+|.|+++|..+|
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~----~~G~~~~~v~~-~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELN----IDGKPRKVLMQ-APKNGFFYVLDRTNG 334 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEE----ETTEEEEEEEE-CCTTSEEEEEETTTC
T ss_pred cCCCccccccCCCCcEEEEec----cCCcEEEEEEE-ECCCCEEEEEECCCC
Confidence 4 321 122222332 3564 4555 559999999999998
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0009 Score=79.90 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=117.5
Q ss_pred EEEEEEecCCCEEEEEEcC------CeEEEEECCCCc-eEEecc--CC-CCeEEEEEeeCCCCEEEEEE-----------
Q 039790 219 VLGRQIAVNRNYICYGLKL------GNIRILNIITAL-RSLLRG--HT-QRVTDMAFFAEDVHLLASAS----------- 277 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~D------G~IrIWd~~~~~-~~~l~~--H~-~~V~slaf~s~dg~~LaSgs----------- 277 (1395)
-..+.++|+| +++++..+ |.|.++|..+.. +..+.. +. ..-+++-| +++++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~-~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWW-NLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEE-ETTTTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEE-CCCCCEEEEccCcCcccccccc
Confidence 3456788999 77776655 789999999875 444442 22 22446777 89999988885
Q ss_pred --------CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE--eCCCCeEEEEEe-----C-CeEEEE
Q 039790 278 --------VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW--HPHKQEILMLAI-----G-NRILKI 341 (1395)
Q Consensus 278 --------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~--sp~~~~lla~g~-----~-~~ii~~ 341 (1395)
.+.+|.+||+.+++ .+..+.+ +........+.| +|++.+.++++. . +.+.+|
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k-----------~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRK-----------RIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTE-----------EEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCc-----------EeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 36899999999765 2222221 111112223444 999998888875 4 456555
Q ss_pred EcCCCCccccccCCCCCccCccccccce----EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceeEE
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGV----QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK---STPLAV 414 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s---g~~l~t 414 (1395)
+... +. |.....+..........+ .-+.+-......|.+|+||..+.++.-..+.|.+||+.. .+.+..
T Consensus 286 ~~d~-g~---~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 286 FYED-GK---WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEET-TE---EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred EecC-Cc---eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence 4422 21 100000000000000000 000001245788999999944455555578999999863 345555
Q ss_pred ecCCC---------CC----CeeEEEEeecCCCCCcEEEEEe
Q 039790 415 LRPYD---------GH----PVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 415 l~~h~---------~~----~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.... +. ....+.++ |||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lS----pDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEIS----RDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEEC----TTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEc----CCCCEEEEEc
Confidence 54220 11 35889999 9999999854
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.003 Score=72.74 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=121.4
Q ss_pred CCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeC-CCCEEEEEEC-----------
Q 039790 217 GLVLGRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAE-DVHLLASASV----------- 278 (1395)
Q Consensus 217 ~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~-dg~~LaSgs~----------- 278 (1395)
..+.++++.+ +|+ |+.+...+.|.+||..++.+..+.. ......++++ .+ +|++.++-..
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~-d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTV-DQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEE-CTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEE-ecCCCEEEEECCccccccccccee
Confidence 3578899998 555 5555555568889988765443322 1235788999 77 8887776532
Q ss_pred ------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCcccc
Q 039790 279 ------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGER 351 (1395)
Q Consensus 279 ------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~ 351 (1395)
+|.|+.||..++.. ............++|++++..++++.. .+.|.++|......+
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~---------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-- 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKET---------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-- 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEE---------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--
T ss_pred hcccCCCceEEEEeCCCCEE---------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--
Confidence 36788888776540 111111123457999999987777754 478888886431100
Q ss_pred ccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC----------CCcEEEEeCCCCceeEEecCCCC-
Q 039790 352 FSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL----------DGTVKIWDDRKSTPLAVLRPYDG- 420 (1395)
Q Consensus 352 ~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~----------Dg~IrIWDl~sg~~l~tl~~h~~- 420 (1395)
....+....+ ...+++.++| +++++... .+.|..+|. .|+.+..+....+
T Consensus 221 ----------------~~~~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~ 281 (322)
T 2fp8_A 221 ----------------TAEVLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPF 281 (322)
T ss_dssp ----------------CEEEEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTT
T ss_pred ----------------ccceEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCC
Confidence 0111111223 7789999998 66555544 467888886 5777777764432
Q ss_pred --CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 421 --HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 421 --~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..++++++. ++..+++ +..++.|.++++...
T Consensus 282 ~~~~~~~~~~~-----~g~L~v~-~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 282 AGEHFEQIQEH-----DGLLYIG-TLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCCCEEEEE-----TTEEEEE-CSSCSEEEEEEC---
T ss_pred ccccceEEEEe-----CCEEEEe-ecCCCceEEEecccc
Confidence 257778774 5655554 447888999988643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.002 Score=73.75 Aligned_cols=204 Identities=10% Similarity=-0.005 Sum_probs=115.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEE 294 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~ 294 (1395)
....+++|+++|+++++-..++.|..||..++....+ ........|+| .++++++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-~~~~~p~gia~-~~dG~l~vad~~~~~~~v~~~d~~~g~~-- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TVEGKVSGLAF-TSNGDLVATGWNADSIPVVSLVKSDGTV-- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-ECSSEEEEEEE-CTTSCEEEEEECTTSCEEEEEECTTSCE--
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-eCCCCceeEEE-cCCCcEEEEeccCCcceEEEEcCCCCeE--
Confidence 5678899999999777766889999999887643333 23456889999 88888766654432 466677776651
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+.... .......++..+ +..++++.. .+.+++++.... ....+.....+.. . ...
T Consensus 108 ----------~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~-~~~v~~~~~~~~~-----~----~~~ 165 (306)
T 2p4o_A 108 ----------ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP-SGSIWLEHPMLAR-----S----NSE 165 (306)
T ss_dssp ----------EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT-EEEEEEECGGGSC-----S----STT
T ss_pred ----------EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCC-cEeEEEECCcccc-----c----ccc
Confidence 1111111 111222344333 334555553 677777775321 0000000000000 0 000
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cce--eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STP--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
..-...+.| ++++..++++-...++|..||+.. +.. ...+... . ....+++. ++|.++++.. .++.|.
T Consensus 166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd----~dG~l~va~~-~~~~V~ 236 (306)
T 2p4o_A 166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFD----VEGNLYGATH-IYNSVV 236 (306)
T ss_dssp CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEB----TTCCEEEECB-TTCCEE
T ss_pred CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEEC----CCCCEEEEeC-CCCeEE
Confidence 111234455 777745666666788999999864 321 1222111 2 46778998 8997766543 678899
Q ss_pred EEECC
Q 039790 451 IWASA 455 (1395)
Q Consensus 451 IWDl~ 455 (1395)
+||..
T Consensus 237 ~~~~~ 241 (306)
T 2p4o_A 237 RIAPD 241 (306)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99864
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0021 Score=70.89 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=118.4
Q ss_pred cceeeeeCCC--CCEEEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEeccCCCCeE--EEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDP--GLVLGRQIAVNRNYICYGLKL--GNIRILNIITALRSLLRGHTQRVT--DMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~--~~V~~va~Spdg~~LasGs~D--G~IrIWd~~~~~~~~l~~H~~~V~--slaf~s~dg~~LaSgs~Dg 280 (1395)
+.+..|. |. ....++.|+. +.+..+.+.+ ..|+++|+.++.+..-..-....+ .+++ .++.+.+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCC
Confidence 4455553 43 4566888886 5555555554 489999999986432222222333 3454 2345555566789
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+.+||..+.+ .+..+.. .. .-..++ .++..++++-.++.+..+|......
T Consensus 86 ~v~v~D~~tl~-----------~~~ti~~---~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~------------ 136 (243)
T 3mbr_X 86 EGFVYDLATLT-----------PRARFRY---PG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ------------ 136 (243)
T ss_dssp EEEEEETTTTE-----------EEEEEEC---SS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCE------------
T ss_pred EEEEEECCcCc-----------EEEEEeC---CC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeE------------
Confidence 99999999876 2222222 11 123444 4677788887778888887654321
Q ss_pred CccccccceEEEc--ccC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCe
Q 039790 361 PVDELINGVQLVG--KHD---GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPV 423 (1395)
Q Consensus 361 ~~~~~~~~~~~l~--~h~---~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V 423 (1395)
...+. .+. ..++.+.|. +| .+++..-.+..|.+.|..+|+.+..+... .+.-.
T Consensus 137 --------~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 137 --------VGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------EEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 11111 111 345677776 45 56666556889999999999999887622 22256
Q ss_pred eEEEEeecCCCCCcEEEEEe
Q 039790 424 NCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.|+|+ |+++.|+++|
T Consensus 207 NGIA~d----~~~~~lfVTG 222 (243)
T 3mbr_X 207 NGIAFD----AEHDRLFVTG 222 (243)
T ss_dssp EEEEEE----TTTTEEEEEE
T ss_pred EEEEEc----CCCCEEEEEC
Confidence 899999 8888888778
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0023 Score=71.76 Aligned_cols=205 Identities=8% Similarity=0.012 Sum_probs=124.7
Q ss_pred CeEEEEEeeCCCCEEEEEEC--CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-
Q 039790 259 RVTDMAFFAEDVHLLASASV--DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG- 335 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~--DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~- 335 (1395)
....|.| ++++.++++.+. ++.|+++|+.+++ .+..+.+ .. ......+.+. ++.++++...
T Consensus 22 f~~Gl~~-~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------v~~~i~l-~~-~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 22 FTQGLVY-AENDTLFESTGLYGRSSVRQVALQTGK-----------VENIHKM-DD-SYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp CEEEEEE-CSTTEEEEEECSTTTCEEEEEETTTCC-----------EEEEEEC-CT-TCCEEEEEEE--TTEEEEEETTC
T ss_pred CcccEEE-eCCCeEEEECCCCCCCEEEEEECCCCC-----------EEEEEec-CC-CcceEEEEEe--CCEEEEEEecC
Confidence 3679999 777766666554 5799999999988 2222221 11 1111234444 5567777654
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
+.+.++|...... +..+..-...- ..+++||..++ .+..+++|.++|..+.+.+.++
T Consensus 86 ~~v~viD~~t~~v--------------------~~~i~~g~~~g--~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 86 NIGFIYDRRTLSN--------------------IKNFTHQMKDG--WGLATDGKILY-GSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp SEEEEEETTTTEE--------------------EEEEECCSSSC--CEEEECSSSEE-EECSSSEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCcE--------------------EEEEECCCCCe--EEEEECCCEEE-EECCCCeEEEEECCCCcEEEEE
Confidence 5566666533211 22232111111 33556774444 4557889999999999888877
Q ss_pred cCCC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc----ccccc
Q 039790 416 RPYD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE----LRLED 487 (1395)
Q Consensus 416 ~~h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i----~~~~~ 487 (1395)
.-.. + ..++.+.|. +|..++. ...++.|.+-|..++ +.+.++....-.. .....
T Consensus 143 ~Vg~~~~p~~~~nele~~-----dg~lyvn-~~~~~~V~vID~~tg------------~V~~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-----NGEVWAN-IWQTDCIARISAKDG------------TLLGWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp ECEETTEECCCEEEEEEE-----TTEEEEE-ETTSSEEEEEETTTC------------CEEEEEECHHHHHHHHHTTCTT
T ss_pred EECCCCcccccceeEEEE-----CCEEEEe-cCCCCeEEEEECCCC------------cEEEEEECCCcccccccccccc
Confidence 6321 1 136788885 6654444 436789999999998 8999888642100 00001
Q ss_pred cccceEEEEeCCCC-EEEEEeCCCeEEEEEcCCC
Q 039790 488 AFFNQVVALNRAGL-FLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~g 520 (1395)
......++|++++. +++++...+.|++.++...
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 11224699999875 6677778899999998653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00092 Score=86.81 Aligned_cols=198 Identities=10% Similarity=0.100 Sum_probs=110.6
Q ss_pred CEEEEEEe-cCCCEEEEEEc-CC----eEEEEECCCC-ceEEeccC-CCCeEEEEEeeCCCCEEEEEECC-----CcEEE
Q 039790 218 LVLGRQIA-VNRNYICYGLK-LG----NIRILNIITA-LRSLLRGH-TQRVTDMAFFAEDVHLLASASVD-----GRFFI 284 (1395)
Q Consensus 218 ~V~~va~S-pdg~~LasGs~-DG----~IrIWd~~~~-~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~D-----gtV~I 284 (1395)
.+....|| |||++||++.. +| .|+++|+.++ ... ..+ .....+++| ++||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~W-spDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVW-GPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEE-CSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--CccccCceeeEEE-ecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99999998754 23 4999999998 521 111 112346889 8999888877765 35888
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|++.++... . .+.+..........+.|++++.+|+.....+ .+.+++.... .. ..
T Consensus 252 ~~lgt~~~~-------~----~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~-~~-------~~--- 309 (751)
T 2xe4_A 252 HVMGKLQSE-------D----VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG-NA-------HN--- 309 (751)
T ss_dssp EETTSCGGG-------C----EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC-TT-------CC---
T ss_pred EECCCCchh-------c----EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC-CC-------Cc---
Confidence 888765411 0 1111112223455789999999888777543 3444443221 00 00
Q ss_pred ccccccceEEE-cccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceeEE-ecCCCC-CCeeEEEEeecCCC
Q 039790 362 VDELINGVQLV-GKHDGEITELSMCQWLTTRLASASLD----GTVKIWDDRKSTPLAV-LRPYDG-HPVNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWDl~sg~~l~t-l~~h~~-~~V~sV~fs~~~~p 434 (1395)
.+..+ ....+..+++.|+. |..+++....+ ..|..+|+.++..... +..|.. ..+..+.+
T Consensus 310 ------~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~------ 376 (751)
T 2xe4_A 310 ------TLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV------ 376 (751)
T ss_dssp ------CEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE------
T ss_pred ------eeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE------
Confidence 00112 22344556666654 43555555544 2567777765322222 333332 13445555
Q ss_pred CCcEEEEEecCCCeEEEEE
Q 039790 435 QHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWD 453 (1395)
++.+|+.....|+..+||-
T Consensus 377 ~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 377 RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CSSEEEEEEEETTEEEEEE
T ss_pred ECCEEEEEEEeCCEEEEEE
Confidence 3555655555788655543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00093 Score=85.37 Aligned_cols=70 Identities=6% Similarity=0.074 Sum_probs=49.2
Q ss_pred EEEEec-CCCEEEEEEcCC-----------eEEEEECCCCceE---Ee-ccCCCCeEEEEEeeCCCCEEEEEEC-CCcEE
Q 039790 221 GRQIAV-NRNYICYGLKLG-----------NIRILNIITALRS---LL-RGHTQRVTDMAFFAEDVHLLASASV-DGRFF 283 (1395)
Q Consensus 221 ~va~Sp-dg~~LasGs~DG-----------~IrIWd~~~~~~~---~l-~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~ 283 (1395)
.+++.+ +|++++.|+.++ .+.+||..++... .+ ..+.....++++ ..++.+++.||. ++.++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~-~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM-DGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE-CTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccC-CCCCCEEEeCCCCCCceE
Confidence 456677 889999987643 5889999887422 22 223334445677 678999999984 45899
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
+||..++.
T Consensus 269 ~yd~~t~~ 276 (656)
T 1k3i_A 269 LYDSSSDS 276 (656)
T ss_dssp EEEGGGTE
T ss_pred EecCcCCc
Confidence 99998765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0029 Score=70.42 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=115.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEE--EEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTD--MAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~s--laf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
....++.|+ ++.+..+.+.+|.|+++|+.+++ +..+ -....+. +++ ..+.+.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~-- 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ-- 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--
Confidence 345678887 45666677788999999999985 2233 2233433 666 234555556678999999999876
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+..+... ..-..++ +++..++++..++.+..+|....... ..+. ..
T Consensus 128 ---------~~~ti~~~----~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-----------------~~I~-V~ 174 (268)
T 3nok_A 128 ---------RERTTRYS----GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-----------------GAVQ-VK 174 (268)
T ss_dssp ---------EEEEEECS----SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEE-----------------EEEE-CE
T ss_pred ---------EEEEEeCC----CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-----------------EEEE-eC
Confidence 22233321 1123444 45677887776777888876443211 0011 11
Q ss_pred ccC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCeeEEEEeecCCCCCcE
Q 039790 374 KHD---GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 374 ~h~---~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V~sV~fs~~~~pdg~~ 438 (1395)
.+. ..++.+.|. +| .+++....+..|.+.|..+|+.+.++... .+.-.+.|+|+ |+++.
T Consensus 175 ~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d----p~~~r 248 (268)
T 3nok_A 175 LRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE----PGSGR 248 (268)
T ss_dssp ETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC----TTTCC
T ss_pred CCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc----CCCCE
Confidence 121 245778887 56 66666667889999999999999887632 12256899999 88777
Q ss_pred EEEEe
Q 039790 439 LITGG 443 (1395)
Q Consensus 439 L~s~G 443 (1395)
|+++|
T Consensus 249 lfVTG 253 (268)
T 3nok_A 249 IFMTG 253 (268)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 77777
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.74 E-value=0.027 Score=67.20 Aligned_cols=237 Identities=8% Similarity=-0.050 Sum_probs=137.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.+|+... ...|+..++.......+......+..|+|...++.++++-...+.|+.+++....... . ...
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-------~---~~~ 152 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------S---YDT 152 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-------C---CEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-------c---ceE
Confidence 3555544 4789999998876555555567889999933455555555567889999987522000 0 012
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+..........+++...++.|+.+-.. +.|.+++...... ...+.........|++.|.
T Consensus 153 ~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--------------------~~l~~~~~~~P~~iavdp~ 212 (400)
T 3p5b_L 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPV 212 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--------------------EEEEECSSCCEEEEEEETT
T ss_pred EEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--------------------EEEEeCCCCCcceEEEecc
Confidence 222233445578888877777776654 4454444321110 1222223445789999997
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASL-DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~-Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
++.++++-.. .+.|...++........+...-. ....|+|+ +++..|..+-...+.|..+|+...
T Consensus 213 ~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd----~~~~~lY~aD~~~~~I~~~d~dG~--------- 278 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG--------- 278 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEE----eCCCEEEEEECCCCEEEEEeCCCC---------
Confidence 6455555433 37888888764433333333223 78999999 888888777767889999998643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+...... . ....+++ ..+.++++....+.|+.++..+|.
T Consensus 279 ---~~~~~~~~~~~l----~---~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 279 ---NRKTILEDEKRL----A---HPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp ---CCEEEEECSSTT----S---SEEEEEE-ETTEEEEEESSSCSEEEEESSSCC
T ss_pred ---ccEEEEeCCCCC----C---CCEEEEE-eCCEEEEecCCCCeEEEEEcCCCC
Confidence 221122211110 0 0113555 345566677777889888866664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.015 Score=69.11 Aligned_cols=201 Identities=12% Similarity=0.005 Sum_probs=126.1
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
....+.+++|.+.+..|+.. ...+.|+.|+..++....+ .........|++ .+ .+.++++-...+.|.++++....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav-d~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE-ETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE-EeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 34568899999866555544 5678999999988754333 323345677888 54 55566666667788888876432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
...+..........++++|.++.++.+..+ ..|.+++...... .
T Consensus 193 --------------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------------------~ 238 (386)
T 3v65_B 193 --------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------------------R 238 (386)
T ss_dssp --------------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------E
T ss_pred --------------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--------------------E
Confidence 011222233445688999988888877654 4666666532211 1
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
......-...+.|+|++++++++++-+..+.|..+|+........+..... ....|++. .+..+++ ...++.|
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-----~~~ly~t-d~~~~~V 311 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-----EDSLYWT-DWHTKSI 311 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-----TTEEEEE-ETTTTEE
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-----CCEEEEe-eCCCCeE
Confidence 222223345789999987756666666678899999865443333333333 67788885 3444444 4477888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
..+|..++
T Consensus 312 ~~~~~~~G 319 (386)
T 3v65_B 312 NSANKFTG 319 (386)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88886666
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.05 Score=62.48 Aligned_cols=199 Identities=13% Similarity=0.017 Sum_probs=123.0
Q ss_pred CCCEEEEEEecCCCEEEEE-EcCCeEEEEECCC----Cc-eEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECC
Q 039790 216 PGLVLGRQIAVNRNYICYG-LKLGNIRILNIIT----AL-RSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~----~~-~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~ 288 (1395)
.....+++|.+++..|+.. ..++.|+.++..+ .. ...+...-.....|++ .. +++++++-...+.|.++++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav-d~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV-DWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE-eecCCeEEEEECCCCEEEEEeCC
Confidence 3567899999876655555 5568999999886 22 2233333345688998 54 55566666778899999987
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
... ...+..........++++|.++.++.+..+ +.|.+++......
T Consensus 108 g~~--------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------------ 155 (316)
T 1ijq_A 108 GVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------ 155 (316)
T ss_dssp SSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------------
T ss_pred CCc--------------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------------
Confidence 432 111122223445689999988888887764 4677776532110
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cC--CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RP--YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~--h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.......-...+.|+|++++++++++-+..+.|..+|+... ....+ .. .-. ....|++. .+..+++ .
T Consensus 156 --~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~-~P~giav~-----~~~ly~~-d 225 (316)
T 1ijq_A 156 --YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLA-HPFSLAVF-----EDKVFWT-D 225 (316)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTS-SEEEEEEE-----TTEEEEE-E
T ss_pred --EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccC-CcEEEEEE-----CCEEEEE-E
Confidence 11122233567899999987556666666789999998743 33333 21 122 56788885 3444444 4
Q ss_pred cCCCeEEEEECCCC
Q 039790 444 PLNRELKIWASAEE 457 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg 457 (1395)
..++.|..+|..++
T Consensus 226 ~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 226 IINEAIFSANRLTG 239 (316)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEeCCCC
Confidence 47788999987766
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.024 Score=66.18 Aligned_cols=199 Identities=12% Similarity=0.015 Sum_probs=125.6
Q ss_pred CCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
...+.+++|.+.+..|... ...+.|+.|+..++....+ .........|++ .. ++.++++-...+.|.+.++....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav-d~~~g~ly~~d~~~~~I~~~~~dG~~- 149 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAH- 149 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEE-ecCCCeEEEEcCCCCeEEEEcCCCCc-
Confidence 3557899999866655554 4678999999988754333 323345678898 54 55666666677899999987533
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
...+....-.....++++|.++.++.+..+ +.|.+++...... .
T Consensus 150 -------------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---------------------~ 195 (349)
T 3v64_C 150 -------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---------------------R 195 (349)
T ss_dssp -------------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------------------E
T ss_pred -------------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---------------------E
Confidence 011122223445689999988888877654 5677776532211 1
Q ss_pred EE-cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 371 LV-GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 371 ~l-~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
.+ ...-...+.|+|++++++++++-+..+.|..+|+........+..... ....|++. .+..+++ ...++.|
T Consensus 196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-----~~~ly~t-d~~~~~V 268 (349)
T 3v64_C 196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-----EDSLYWT-DWHTKSI 268 (349)
T ss_dssp ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-----TTEEEEE-ETTTTEE
T ss_pred EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-----CCEEEEe-cCCCCeE
Confidence 11 112345789999987756666666678899999865433333333333 67788885 3444444 4467888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
..+|..++
T Consensus 269 ~~~~~~~G 276 (349)
T 3v64_C 269 NSANKFTG 276 (349)
T ss_dssp EEEETTTC
T ss_pred EEEEccCC
Confidence 88886555
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0041 Score=69.08 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred cCCCC--eEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 255 GHTQR--VTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 255 ~H~~~--V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.|... ...|.| . ++.++.+++.+| .|+++|+.+++ .+..+.+ ...........+++.++
T Consensus 38 phd~~~ftqGL~~-~-~~~LyestG~~g~S~v~~vD~~Tgk-----------v~~~~~l----~~~~FgeGit~~g~~ly 100 (262)
T 3nol_A 38 PHDTKAFTEGFFY-R-NGYFYESTGLNGRSSIRKVDIESGK-----------TLQQIEL----GKRYFGEGISDWKDKIV 100 (262)
T ss_dssp ECCTTCEEEEEEE-E-TTEEEEEEEETTEEEEEEECTTTCC-----------EEEEEEC----CTTCCEEEEEEETTEEE
T ss_pred cCCCCcccceEEE-E-CCEEEEECCCCCCceEEEEECCCCc-----------EEEEEec----CCccceeEEEEeCCEEE
Confidence 45443 578999 5 678888888877 89999999988 2222221 11222222333456677
Q ss_pred EEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 331 MLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 331 a~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.+.. ++.+.++|...... +..+.- ...-+.+ ++|+ ..|+.+..++.|.++|..+.
T Consensus 101 ~ltw~~~~v~v~D~~t~~~--------------------~~ti~~-~~eG~gl--t~dg-~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQ--------------------VRSFNY-DGEGWGL--THND-QYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp EEESSSSEEEEEETTTCCE--------------------EEEEEC-SSCCCCE--EECS-SCEEECCSSSEEEEECTTTC
T ss_pred EEEeeCCEEEEEECccCcE--------------------EEEEEC-CCCceEE--ecCC-CEEEEECCCCeEEEEcCCCC
Confidence 6665 55566666543221 223321 1122233 3566 45555455788999999999
Q ss_pred ceeEEecCCC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-
Q 039790 410 TPLAVLRPYD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR- 484 (1395)
Q Consensus 410 ~~l~tl~~h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~- 484 (1395)
+.+.++.-.. + ..++.+.|. +|+..+. .-.++.|.+.|..++ +++.++....-....
T Consensus 157 ~v~~~I~V~~~g~~~~~lNELe~~-----~G~lyan-~w~~~~I~vIDp~tG------------~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 157 TPVRTITVTAHGEELPELNELEWV-----DGEIFAN-VWQTNKIVRIDPETG------------KVTGIIDLNGILAEAG 218 (262)
T ss_dssp SEEEEEECEETTEECCCEEEEEEE-----TTEEEEE-ETTSSEEEEECTTTC------------BEEEEEECTTGGGGSC
T ss_pred eEEEEEEeccCCccccccceeEEE-----CCEEEEE-EccCCeEEEEECCCC------------cEEEEEECCcCccccc
Confidence 9888876421 1 135568885 6765544 436889999999999 999998875321100
Q ss_pred --ccccccceEEEEeCCCCEEEEEeC
Q 039790 485 --LEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 485 --~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.....+-..++|++++..|...++
T Consensus 219 ~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccCcCCceEEEEEcCCCCEEEEECC
Confidence 011123357999998776555543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0045 Score=77.57 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=39.5
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-E--eccCC--CCeEE-EEEeeCCCCEEEEEEC------CCcEEEEECCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-L--LRGHT--QRVTD-MAFFAEDVHLLASASV------DGRFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~--l~~H~--~~V~s-laf~s~dg~~LaSgs~------DgtV~IWdl~tg~ 291 (1395)
++..|+.++.|+.|..+|..+|.+. . +..+. ..+.+ ..+ .++ .++.++. +|.|+.+|..+|+
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 3567888888999999999998533 2 22211 12221 112 144 4555544 7999999999998
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.044 Score=68.59 Aligned_cols=189 Identities=9% Similarity=-0.103 Sum_probs=98.8
Q ss_pred cEEEEeCCCCceeEEecC--CCC---CCeeEEEEeecCCCCCc--EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 400 TVKIWDDRKSTPLAVLRP--YDG---HPVNCVTFLIGPHPQHI--VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 400 ~IrIWDl~sg~~l~tl~~--h~~---~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
.|..+|.++|+.+..+.. |.. ..+....+... ..+|+ .++..++.+|.|.++|..++ +.+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~-~~~G~~~~~v~~~~~~G~l~~lD~~tG------------~~~ 339 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQ-PVNGKMTPLLSHIDRNGILYTLNRENG------------NLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-EETTEEEEEEEEECTTSEEEEEETTTC------------CEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEec-ccCCcEEEEEEEeCCCcEEEEEECCCC------------CEE
Confidence 599999999999888763 221 01122222100 03674 33333558999999999998 555
Q ss_pred EEEeccCc-------------ccc---------------cc-cc-cccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 473 QTLELKSS-------------AEL---------------RL-ED-AFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 473 ~tl~~h~~-------------~i~---------------~~-~~-~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..+..... .+. ++ .. ..--..+++++++.+|+....+....++.......
T Consensus 340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 419 (571)
T 2ad6_A 340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR 419 (571)
T ss_dssp EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence 44443220 000 00 00 00002467888888888888877777665443111
Q ss_pred CCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceee-ecccc-eEEecCC-CCC-eecccCCCceEEE
Q 039790 523 PASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQ-YALDL-SQCLPPP-LEN-AELEKTDSNATRA 598 (1395)
Q Consensus 523 ~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~-~~~~~-~~cl~~s-~d~-l~~~~sd~~v~~i 598 (1395)
... .|.+. .+.+...........++.|+.||+.++++.. +.... ....++. .++ +.++ +.++.++.
T Consensus 420 ~g~-------~~~g~--~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a 489 (571)
T 2ad6_A 420 AGQ-------FFVGA--TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKA 489 (571)
T ss_dssp TTS-------CCCCE--EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEE
T ss_pred cCC-------ccccc--cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEE
Confidence 000 01110 0011111100011346889999999998743 21111 1111211 233 3443 45577789
Q ss_pred eecCCCCcceeec
Q 039790 599 FDVANPDGSASLE 611 (1395)
Q Consensus 599 WD~~tg~~~~~l~ 611 (1395)
||+.||+.+-.++
T Consensus 490 ~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 490 LDNKDGKELWNFK 502 (571)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9999999988877
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.03 Score=72.80 Aligned_cols=322 Identities=9% Similarity=0.022 Sum_probs=172.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec---------------cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR---------------GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~---------------~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...|.++....+|. |..|+..+-|.+||..++....+. -....|.+|.. ..+|. |..|+.++
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~-D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ-DSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE-CSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE-eCCCC-EEEEecCC
Confidence 35688888887776 555676566888998876433221 13457999988 66665 55677777
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEe-------cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQIL-------ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS 353 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-------~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s 353 (1395)
-|..|+...+... .+... .-....|.+++...++ .+.++..++++.+++.... ....+.
T Consensus 334 Gl~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~-~~~~~~ 399 (781)
T 3v9f_A 334 GINFISNAPPTFH------------TWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGINVFENGKR-VAIYNK 399 (781)
T ss_dssp CEEEECSSCCSCE------------EEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCEEEEETTEE-EEECC-
T ss_pred eEEEeCCCCCcce------------eeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcEEEEECCCC-eEEEcc
Confidence 8999998765410 11000 0123456677776665 4666666788888876321 100000
Q ss_pred CCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeec
Q 039790 354 AEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIG 431 (1395)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~ 431 (1395)
.........|.++....+| .|..|+.++-|..||..+++.. .+.. .....|.++...
T Consensus 400 ----------------~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d-- 458 (781)
T 3v9f_A 400 ----------------ENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYED-- 458 (781)
T ss_dssp --------------------CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEEC--
T ss_pred ----------------CCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEEC--
Confidence 0001234679999988776 3455777777999998777543 3321 122379999887
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
.+|...+. . . +-|.+||..++ +........... .....+..+....+|.+.++...+|
T Consensus 459 --~~g~lwig-t-~-~Gl~~~~~~~~------------~~~~~~~~~~~~----~~~~~i~~i~~d~~g~lWigt~~~G- 516 (781)
T 3v9f_A 459 --KNKKIWIG-T-H-AGVFVIDLASK------------KVIHHYDTSNSQ----LLENFVRSIAQDSEGRFWIGTFGGG- 516 (781)
T ss_dssp --TTSEEEEE-E-T-TEEEEEESSSS------------SCCEEECTTTSS----CSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred --CCCCEEEE-E-C-CceEEEeCCCC------------eEEecccCcccc----cccceeEEEEEcCCCCEEEEEcCCC-
Confidence 77765553 4 4 56889998765 222211111000 0011233577788888776554344
Q ss_pred EEEEEcCCCCCCCCcceeeeeeee--ccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeeccc------ceEEecC
Q 039790 512 IYAIHMDYGPNPASTRMDYIAEFT--VTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYALD------LSQCLPP 581 (1395)
Q Consensus 512 I~iWdl~~g~~~~~~~~~~i~~f~--~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~~------~~~cl~~ 581 (1395)
|+.|+...+. +..+.... ....+.++...... .++...|.|..|+..++.+..+... ...++..
T Consensus 517 l~~~~~~~~~------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 517 VGIYTPDMQL------VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp EEEECTTCCE------EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEE
T ss_pred EEEEeCCCCe------EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEE
Confidence 7778765431 11111100 01223333222201 1123345447788887776554321 1223334
Q ss_pred CCCCeecccCCCceEEEeecCCC
Q 039790 582 PLENAELEKTDSNATRAFDVANP 604 (1395)
Q Consensus 582 s~d~l~~~~sd~~v~~iWD~~tg 604 (1395)
..++-.+-++..++. .||..++
T Consensus 591 d~~g~lW~~t~~Gl~-~~~~~~~ 612 (781)
T 3v9f_A 591 DKNGNIWASTNTGIS-CYITSKK 612 (781)
T ss_dssp CSSSCEEEECSSCEE-EEETTTT
T ss_pred CCCCCEEEEcCCceE-EEECCCC
Confidence 444433333355655 4565543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0029 Score=78.11 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=68.3
Q ss_pred cEEEEeCCC--Cce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC----CCCCCCCcccccEE
Q 039790 400 TVKIWDDRK--STP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE----GWLLPSDIESWKCT 472 (1395)
Q Consensus 400 ~IrIWDl~s--g~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~----~~~~~~~~~~~~~l 472 (1395)
.|.|.|.++ ++. +..+..-. ...++.|+ |||+++++++..+.+|.++|+.+.+ +.+. .....+
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~s----PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~----~~~~v~ 324 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIAN--NPHGCNMA----PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD----PRSAVV 324 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEES--SCCCEEEC----TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC----GGGGEE
T ss_pred cEEEEeCcccCCceeEEEEecCC--CceEEEEc----CCCCEEEEeCCCCCeEEEEECcccccccccccC----cccceE
Confidence 478888887 555 55665332 57889999 9999999999899999999998641 0000 000122
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+.... --..++|+++|...++.-.|+.|.+|++..
T Consensus 325 ~~v~vG~----------gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 AEPELGL----------GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECCBCCS----------CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEcCCCC----------CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2222111 123589999996667788999999999976
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.035 Score=72.16 Aligned_cols=336 Identities=11% Similarity=0.013 Sum_probs=174.0
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------HTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
..|.++....+|.+.+ |+.+ .|.+||..++....+.. ....|.+|.. ..+|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ-LKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEE-CTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEE-CCCCC-EEEEeCCCCeEEECCC
Confidence 5688888888887554 4555 68899988775443321 2356999988 56665 5556665678999988
Q ss_pred CCCCCCCCcccccceEEEEEEe----cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL----ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~----~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
++....... .....+... .-....|.++....++ .+.++..++++.+++..... ...+.....
T Consensus 287 ~~~~~~~~~----~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~------- 353 (781)
T 3v9f_A 287 QNQFLLPEQ----IRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFISNAPPT-FHTWSYSPT------- 353 (781)
T ss_dssp CC-------------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCS-CEEEC-----------
T ss_pred CCeeeeeec----cccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCc-ceeeccCcc-------
Confidence 765211000 000000000 0123456677777766 46666668888888754311 000000000
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe---cCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL---RPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl---~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
... ...-....|.++....+| .|..|+.++-|.+||..++...... ..... .|.++... .+|.+.+.
T Consensus 354 -~~~--~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~d----~~g~lWig 423 (781)
T 3v9f_A 354 -QMN--ESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSN-SVLCSLKD----SEGNLWFG 423 (781)
T ss_dssp -CCC--SSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCS-BEEEEEEC----TTSCEEEE
T ss_pred -ccc--cCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc-ceEEEEEC----CCCCEEEE
Confidence 000 000123569999988876 4556676677999997655322111 11223 78999887 67776553
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .++-|..||..++ +. ..+... .. . ...+..+....+|.+.++. . +.|+.|+..++.
T Consensus 424 -t-~~~Gl~~~~~~~~------------~~-~~~~~~-~~----~-~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 424 -T-YLGNISYYNTRLK------------KF-QIIELE-KN----E-LLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKK 480 (781)
T ss_dssp -E-TTEEEEEECSSSC------------EE-EECCST-TT----C-CCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSS
T ss_pred -e-ccCCEEEEcCCCC------------cE-EEeccC-CC----C-CCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCe
Confidence 3 5677899988765 32 222211 00 0 1122346667778766654 3 568899977643
Q ss_pred CCCCcceeeeeee-eccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeecc------cceEEecCCCCCeecccCC
Q 039790 522 NPASTRMDYIAEF-TVTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYAL------DLSQCLPPPLENAELEKTD 592 (1395)
Q Consensus 522 ~~~~~~~~~i~~f-~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~------~~~~cl~~s~d~l~~~~sd 592 (1395)
.. .+...... .....+.++...... .++..++-|..|+..++.+..+.. ....|+....++..+-++.
T Consensus 481 ~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 481 VI---HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp CC---EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred EE---ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 21 11000000 001223333222201 112222347778888877665532 2245666655553333334
Q ss_pred CceEEEeecCCCC
Q 039790 593 SNATRAFDVANPD 605 (1395)
Q Consensus 593 ~~v~~iWD~~tg~ 605 (1395)
.+++..||..++.
T Consensus 558 ~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 558 EGLVCFPSARNFD 570 (781)
T ss_dssp TEEEEESCTTTCC
T ss_pred CCceEEECCCCCc
Confidence 5664567776654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.57 E-value=0.046 Score=65.11 Aligned_cols=202 Identities=13% Similarity=0.025 Sum_probs=124.3
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
....+.+++|.+.+..|... ...+.|+.+++.+. ....+.........|++....++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34678899999866666555 45688999998762 2333333445678899932356666666677889999987
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
... ...+..........|+++|.++.++.+..+ ..|.+++......
T Consensus 190 g~~--------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------------ 237 (400)
T 3p5b_L 190 GVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------ 237 (400)
T ss_dssp TCS--------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------------
T ss_pred CCc--------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------------
Confidence 543 111222233345689999988888877643 5666666532211
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
...+...-...+.|+|++++++++++=...+.|..+|+........+.. .-. ....|++. .+..+++ ..
T Consensus 238 --~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-----~~~lywt-d~ 308 (400)
T 3p5b_L 238 --YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-----EDKVFWT-DI 308 (400)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-----TTEEEEE-ES
T ss_pred --EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-----CCEEEEe-cC
Confidence 1222223356889999988755555555678899999865433333332 222 45677774 3334444 44
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
..+.|..+|..++
T Consensus 309 ~~~~V~~~~~~~G 321 (400)
T 3p5b_L 309 INEAIFSANRLTG 321 (400)
T ss_dssp SSCSEEEEESSSC
T ss_pred CCCeEEEEEcCCC
Confidence 7788988887666
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.019 Score=69.31 Aligned_cols=250 Identities=9% Similarity=0.074 Sum_probs=140.8
Q ss_pred CCEEEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---Cc-EEEEECCCC
Q 039790 217 GLVLGRQIAVN--RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GR-FFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spd--g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gt-V~IWdl~tg 290 (1395)
....+++|+++ +..|..+...+.|+.+|..++.+..+........+|+| .++|+++++.... .. +..++...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giav-d~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNF-TLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEE-CTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEE-CCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34568899984 44555554448999999988877777666667999999 8898855554321 12 333332211
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
. ... ..+. .......+++++.++.++++.. .+.+.+++... +.. ...+
T Consensus 218 ~--------~~~--~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~----------------~~~~ 266 (433)
T 4hw6_A 218 F--------TER--LSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTL----------------TEEE 266 (433)
T ss_dssp T--------CCE--EEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCE----------------EEEE
T ss_pred e--------ecc--cccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeE----------------EEEE
Confidence 1 000 1111 1223456888995556666554 45677776531 110 0001
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCce--eEEecCC---CC-----------CCeeEEEE---
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KSTP--LAVLRPY---DG-----------HPVNCVTF--- 428 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg~~--l~tl~~h---~~-----------~~V~sV~f--- 428 (1395)
.. .+....-..|+|+|++..++++-...+.|+.+|.. ++.. ...+.+. .+ .....++|
T Consensus 267 ~~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n 345 (433)
T 4hw6_A 267 VM-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKN 345 (433)
T ss_dssp EE-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEEC
T ss_pred ec-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcc
Confidence 11 11122345799999993355565667889998865 3321 1222221 11 13567888
Q ss_pred ------eecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-----cc---cccccc-ccceE
Q 039790 429 ------LIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-----AE---LRLEDA-FFNQV 493 (1395)
Q Consensus 429 ------s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-----~i---~~~~~~-~~~~~ 493 (1395)
. .+|.++++ -..++.|+.++. ++ . +.++.+... .. ...... ..-..
T Consensus 346 ~~y~~dd----~~g~lyva-D~~n~~I~~~~~-~G------------~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~g 406 (433)
T 4hw6_A 346 EAYAGEE----DEYDFYFC-DRDSHTVRVLTP-EG------------R-VTTYAGRGNSREWGYVDGELRSQALFNHPTS 406 (433)
T ss_dssp GGGTTSS----CCEEEEEE-ETTTTEEEEECT-TS------------E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEE
T ss_pred ccccccC----CCCcEEEE-ECCCCEEEEECC-CC------------C-EEEEEeCCCCCccccCCCccccccEeCCCcE
Confidence 5 56665555 557889999984 33 2 333433221 00 000000 11346
Q ss_pred EEEe-CCCCEEEEEeCCCeEEEEEcC
Q 039790 494 VALN-RAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 494 l~~S-~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
++++ ++|.++++-..++.|+.++++
T Consensus 407 iavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 407 IAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8888 788888888888899888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.01 Score=71.53 Aligned_cols=252 Identities=9% Similarity=0.057 Sum_probs=138.7
Q ss_pred CEEEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CC----cEEEEECCCCC
Q 039790 218 LVLGRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DG----RFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-Dg----tV~IWdl~tg~ 291 (1395)
...+++|+| ++..|..+...+.|+++|..++.+..+.........|+| .+++++|+.+.. ++ .+.+++ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~-d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICW-THEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEE-CTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEE-eCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 456889998 455666665558899999998876666556667899999 888985555554 22 233344 3333
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
... ...+.. ......++++++++.++++.. .+.|.+++...... ..+.
T Consensus 216 ~~~---------~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------------~~~~ 264 (430)
T 3tc9_A 216 FKV---------ITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------------TPLF 264 (430)
T ss_dssp SCS---------EEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------------EEEE
T ss_pred eee---------eeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------------EEEE
Confidence 110 011211 223457889996556666654 56777777632110 0011
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEecCC---CC-----------CCee-EEEEeec
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLRPY---DG-----------HPVN-CVTFLIG 431 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~~h---~~-----------~~V~-sV~fs~~ 431 (1395)
.. +.......|+|+|+|..++++-...+.|..||... +.. +.++.+. .+ .... .++....
T Consensus 265 ~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 265 TI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP 343 (430)
T ss_dssp EC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred Ec-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence 11 12245788999999932556666778899987653 221 2233221 11 0122 3444200
Q ss_pred ----CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC-----c---cccccccc-ccceEEEEeC
Q 039790 432 ----PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS-----S---AELRLEDA-FFNQVVALNR 498 (1395)
Q Consensus 432 ----~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~-----~---~i~~~~~~-~~~~~l~~S~ 498 (1395)
..++|.++++ -..++.|+.++. .+ . +.++-+.. + ........ ..-..+++++
T Consensus 344 ~y~~~D~~g~lyva-D~~n~~I~~i~~-~G------------~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 344 AYKGSSDEYDFYFC-DRENHCIRILTP-QG------------R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp GGTTSSCCEEEEEE-EGGGTEEEEECT-TS------------E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred cccccCCCCeEEEE-ECCCcEEEEECC-CC------------c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 0023444443 446788888873 33 2 23333221 0 00000000 1234688888
Q ss_pred -CCCEEEEEeCCCeEEEEEcC
Q 039790 499 -AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 499 -dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+|.++++...++.|+.++++
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 68888888888889888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.052 Score=70.30 Aligned_cols=236 Identities=8% Similarity=-0.046 Sum_probs=137.3
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
+|+... ...|+..++.......+......+..|+|...++.++++-...+.|+.+++...... +. ...+
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-------~~---~~~v 465 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------SS---YDTV 465 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEE
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-------cc---eeEE
Confidence 444443 456888888876555455556678899994345566666666788999998753200 00 1122
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+.........|++...++.|+.+-.. +.|.+++...... ..++.........|++.|.+
T Consensus 466 i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--------------------~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 466 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--------------------EEEEECTTCCEEEEEEETTT
T ss_pred EecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--------------------EEEEeCCCCCcceEEEecCC
Confidence 33233445678999888888877654 4555555432110 12222334568899999986
Q ss_pred CcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 389 TTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 389 ~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+.++++-..+ +.|...++........+...-. ....|++. +.+..|+.+-...+.|..+|+...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~-~P~GLavD----~~~~~LYwaD~~~~~I~~~d~dG~---------- 590 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG---------- 590 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC----------
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCC-CceEEEEe----cCCCeEEEEeCCCCcEEEEecCCC----------
Confidence 4555554333 7788888764443333333323 78999998 777777776667788999998654
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+....... .. ..+++. .+.++++....+.|+..+..+|.
T Consensus 591 --~~~~v~~~~~~l~----~P---~glav~-~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 591 --NRKTILEDEKRLA----HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp --SCEEEEECTTTTS----SE---EEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred --ceEEEecCCCccC----CC---CEEEEe-CCEEEEEECCCCEEEEEeCCCCc
Confidence 2222222211110 01 124443 34566666677888888876664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.49 E-value=0.041 Score=63.45 Aligned_cols=230 Identities=8% Similarity=-0.036 Sum_probs=134.5
Q ss_pred EEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 230 YICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+|+.+. ...|+.+|+++.. ...+...-..+..|+|...++.++++-...+.|+.+++..+... ..
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------~~---- 72 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QN---- 72 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------CE----
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------EE----
Confidence 344433 3679999998762 22222223457789994445666666667788999998765310 00
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
+....-.....+++.+.++.++.+-. .+.|.+++...... ...+.........+++.|
T Consensus 73 -~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--------------------~~l~~~~~~~P~giavdp 131 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------KVLFWQELDQPRAIALDP 131 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSEEEEEEEG
T ss_pred -EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--------------------EEEEeCCCCCccEEEEeC
Confidence 11111223457888887777776654 35566665432111 122223445678999998
Q ss_pred CCCcEEEEEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 387 WLTTRLASAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 387 dg~~~LaSgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
.++.++++-. ..+.|..++... .....+....-.....|+|+ +++..|..+-...+.|..+|+...
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd----~~~~~lY~aD~~~~~I~~~d~dG~-------- 198 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGT-------- 198 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC--------
T ss_pred CCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEe----ccCCEEEEEECCCCEEEEEcCCCC--------
Confidence 7644555442 357888888753 33333321211267999999 877777776767899999998643
Q ss_pred cccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 466 IESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .+.+-. ..... ..+++. .+.++++....+.|+.++..+|.
T Consensus 199 ----~-~~~~~~~~~~~P---------~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 199 ----N-RQAVVKGSLPHP---------FALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp ----S-CEEEECSCCSCE---------EEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ----c-eEEEecCCCCCc---------eEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 1 122211 11111 135554 34566667778889999987765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.032 Score=70.03 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=36.8
Q ss_pred EEEEEcCCeEEEEECCCCceE-Ee--ccCC--CCeEE-EEEeeCCCCEEEEEE------CCCcEEEEECCCCC
Q 039790 231 ICYGLKLGNIRILNIITALRS-LL--RGHT--QRVTD-MAFFAEDVHLLASAS------VDGRFFIWNITEGP 291 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~-~l--~~H~--~~V~s-laf~s~dg~~LaSgs------~DgtV~IWdl~tg~ 291 (1395)
|+.++.|+.|.-+|..+|.+. .. ..+. ..+.+ -.+ .++ .++.++ .+|.|+.+|..+|+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKD-KVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECC-EEEEEecccccCCCCeEEEEECCCCc
Confidence 788888999999999998533 22 1111 12221 112 144 444444 38999999999998
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.078 Score=58.92 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=131.1
Q ss_pred eeCCCCCEEEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYIC-YGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+.+-.+.+.+++|.++++.|+ +...++.|..+|........+ .+ ....-.|++ ..++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~-~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEY-IGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-CSSEEEEEE-CSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEE-eCCCEEEEEECCCCcEEEEEcC
Confidence 344446799999999766554 567789999999984434333 33 256888999 6778777776677899999987
Q ss_pred CCCCCCCCcccccceEEEEEEe---cCCCCCccEEEEeCCCCeEEEEEeCCe--EEEEEcCCCCccccccCCCCCccCcc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL---ADGDSVHPRVCWHPHKQEILMLAIGNR--ILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~---~~~~~~v~~v~~sp~~~~lla~g~~~~--ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
..... ..+....+- .........++|++.++.++++...+. ++.|+ ...... .+.....
T Consensus 100 ~~~~i--------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~------~l~i~~~ 163 (255)
T 3qqz_A 100 PNSEV--------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSN------ELHISKD 163 (255)
T ss_dssp TTCCE--------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSS------CCEEEEC
T ss_pred CCCee--------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCC------ceeeecc
Confidence 65410 011122211 122344568999999988888776554 44444 110000 0000000
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC--------CCeeEEEEeecCCCC
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG--------HPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~--------~~V~sV~fs~~~~pd 435 (1395)
.... -..+-..+..++|+|..+++++....++.|.++|.. |+.+..+.-..+ ..--.|+|. ++
T Consensus 164 ~~~~----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d----~~ 234 (255)
T 3qqz_A 164 KALQ----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD----AS 234 (255)
T ss_dssp HHHH----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC----TT
T ss_pred hhhc----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC----CC
Confidence 0000 001234578999999886788888888999999954 666665543321 145889998 89
Q ss_pred CcEEEEEecCCCeEEEEE
Q 039790 436 HIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWD 453 (1395)
|+..++ + .-+.++.+.
T Consensus 235 G~lyIv-s-E~n~~y~f~ 250 (255)
T 3qqz_A 235 GNIYIV-S-EPNRFYRFT 250 (255)
T ss_dssp CCEEEE-E-TTTEEEEEE
T ss_pred CCEEEE-c-CCceEEEEE
Confidence 986665 5 556555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.084 Score=66.26 Aligned_cols=208 Identities=7% Similarity=-0.122 Sum_probs=107.4
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEeCCCCceeEEecCCCC-CC----eeE-EEEeecCCCCC--
Q 039790 381 ELSMCQWLTTRLASASLD----------------GTVKIWDDRKSTPLAVLRPYDG-HP----VNC-VTFLIGPHPQH-- 436 (1395)
Q Consensus 381 slafspdg~~~LaSgs~D----------------g~IrIWDl~sg~~l~tl~~h~~-~~----V~s-V~fs~~~~pdg-- 436 (1395)
.+++.+.. .++..++.+ +.|..+|..+|+.+..+..... .+ +.. +.+. ....+|
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d-~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSE-QKDKDGKA 322 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE-EECTTSCE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEe-ccccCCcE
Confidence 35566665 466666554 3799999999999887763211 01 111 1121 000256
Q ss_pred -cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-------------ccc---------------c--c
Q 039790 437 -IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-------------AEL---------------R--L 485 (1395)
Q Consensus 437 -~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-------------~i~---------------~--~ 485 (1395)
..++. ++.+|.|.++|..++ +.+..+..... .+. + .
T Consensus 323 ~~~v~~-~~~~G~l~~lD~~tG------------~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~ 389 (599)
T 1w6s_A 323 RKLLTH-PDRNGIVYTLDRTDG------------ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSA 389 (599)
T ss_dssp EEEEEE-ECTTSEEEEEETTTC------------CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCT
T ss_pred EEEEEE-ECCCcEEEEEECCCC------------CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCc
Confidence 34444 559999999999998 54444432210 000 0 0
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEe-cCCCCcCcCCCCeEEEEEcC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLT-GTTTDASPDGEHIVQIYCVQ 564 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~-~~~~d~~~s~dg~V~lWdv~ 564 (1395)
.-..-...++++++..+++....+....++-.......... |.+ .....+. ...........+.|..||+.
T Consensus 390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~-------~~g-~~~~~~~~p~~~~~~~~~~G~l~A~D~~ 461 (599)
T 1w6s_A 390 MGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF-------FVG-ATLNMYPGPKGDRQNYEGLGQIKAYNAI 461 (599)
T ss_dssp TCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC-------CCC-EEEEEEECTTSBTTTTBCCEEEEEECTT
T ss_pred ccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc-------eec-ccceeccCCcCCcccCCCcCeEEEEECC
Confidence 00001125788999999888887766554433211000000 100 0000111 11101111256899999999
Q ss_pred CCceeeec-ccce-EEecC-CCCCeecccCCCceEEEeecCCCCcceeec
Q 039790 565 TQAIQQYA-LDLS-QCLPP-PLENAELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 565 t~~i~~~~-~~~~-~cl~~-s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
++++..-. .... ..-++ ...++.+.++.++.++.||+.||+.+-.++
T Consensus 462 tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 462 TGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 99875321 1111 00111 123333334456788899999999887776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.026 Score=62.13 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=116.7
Q ss_pred cCCC--CeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 255 GHTQ--RVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 255 ~H~~--~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.|.. -+..|.| .. +.++.+.+.+| .|+++|+.+++ .+..+.+- ...........++.++
T Consensus 16 phd~~~ftqGL~~-~~-~~LyestG~~g~S~v~~vD~~tgk-----------v~~~~~l~----~~~fgeGi~~~~~~ly 78 (243)
T 3mbr_X 16 PHDTTAFTEGLFY-LR-GHLYESTGETGRSSVRKVDLETGR-----------ILQRAEVP----PPYFGAGIVAWRDRLI 78 (243)
T ss_dssp ECCTTCCEEEEEE-ET-TEEEEEECCTTSCEEEEEETTTCC-----------EEEEEECC----TTCCEEEEEEETTEEE
T ss_pred CCCCccccccEEE-EC-CEEEEECCCCCCceEEEEECCCCC-----------EEEEEeCC----CCcceeEEEEeCCEEE
Confidence 4543 4679999 44 66777777765 89999999988 22222111 1112222223355666
Q ss_pred EEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 331 MLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 331 a~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.... ++.+.++|...... +..+. ....-+.++ .++ ..|+.+..++.|.++|..+.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~--------------------~~ti~-~~~~Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTP--------------------RARFR-YPGEGWALT--SDD-SHLYMSDGTAVIRKLDPDTL 134 (243)
T ss_dssp EEESSSSEEEEEETTTTEE--------------------EEEEE-CSSCCCEEE--ECS-SCEEEECSSSEEEEECTTTC
T ss_pred EEEeeCCEEEEEECCcCcE--------------------EEEEe-CCCCceEEe--eCC-CEEEEECCCCeEEEEeCCCC
Confidence 6654 45556666533211 22332 122223444 566 44444456889999999999
Q ss_pred ceeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-
Q 039790 410 TPLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR- 484 (1395)
Q Consensus 410 ~~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~- 484 (1395)
+.+.++.-... ..++.+.|. +|+.++.. -.+..|.+.|..++ +++..+....-....
T Consensus 135 ~~~~~I~V~~~g~~~~~lNeLe~~-----~G~lyanv-w~s~~I~vIDp~tG------------~V~~~idl~~l~~~~~ 196 (243)
T 3mbr_X 135 QQVGSIKVTAGGRPLDNLNELEWV-----NGELLANV-WLTSRIARIDPASG------------KVVAWIDLQALVPDAD 196 (243)
T ss_dssp CEEEEEECEETTEECCCEEEEEEE-----TTEEEEEE-TTTTEEEEECTTTC------------BEEEEEECGGGSTTTT
T ss_pred eEEEEEEEccCCcccccceeeEEe-----CCEEEEEE-CCCCeEEEEECCCC------------CEEEEEECCcCccccc
Confidence 98888764211 146778885 77755544 36789999999999 999998865321100
Q ss_pred ---ccccccceEEEEeCCCCEE-EEEeCCCeEE
Q 039790 485 ---LEDAFFNQVVALNRAGLFL-LANAKKNAIY 513 (1395)
Q Consensus 485 ---~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~ 513 (1395)
....-+-..+++++++..| ++|-.=..+|
T Consensus 197 ~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 197 ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp SCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 0111233478998876654 5544333333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0065 Score=67.55 Aligned_cols=190 Identities=7% Similarity=0.021 Sum_probs=115.2
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCe
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNR 337 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ 337 (1395)
-...|.| . ++.++++.+.+|.|+++|+.+++.. ..+ +.. .........+++.++.... ++.
T Consensus 56 ftqGL~~-~-~~~Ly~stG~~g~v~~iD~~Tgkv~-----------~~~--l~~---~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 56 FTQGLVF-H-QGHFFESTGHQGTLRQLSLESAQPV-----------WME--RLG---NIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp CEEEEEE-E-TTEEEEEETTTTEEEECCSSCSSCS-----------EEE--ECT---TCCEEEEEECSSCEEEEESSSCE
T ss_pred ccceEEE-E-CCEEEEEcCCCCEEEEEECCCCcEE-----------eEE--CCC---CcceeEEEEeCCEEEEEEccCCE
Confidence 3578998 4 5678888899999999999998832 222 111 1222223335556666654 455
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
+.++|...... +..+.. ...-+.++ +|+ ..|+.+..++.|.++|..+.+.+.++.-
T Consensus 118 v~V~D~~Tl~~--------------------~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 118 LFTWSGMPPQR--------------------ERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEEETTTTEE--------------------EEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEECCcCcE--------------------EEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 66666533221 222321 22223444 456 5566666789999999999998888763
Q ss_pred CC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc----cccccc
Q 039790 418 YD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL----RLEDAF 489 (1395)
Q Consensus 418 h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~----~~~~~~ 489 (1395)
.. + ..++.+.|. +|+.++. .-.+..|.+-|..++ +++.++....-... ......
T Consensus 174 ~~~g~~v~~lNeLe~~-----dG~lyan-vw~s~~I~vIDp~TG------------~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 174 KLRGQPVELINELECA-----NGVIYAN-IWHSSDVLEIDPATG------------TVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EETTEECCCEEEEEEE-----TTEEEEE-ETTCSEEEEECTTTC------------BEEEEEECHHHHHHHTTTCCCTTC
T ss_pred CCCCcccccccccEEe-----CCEEEEE-ECCCCeEEEEeCCCC------------cEEEEEECCCCcccccccccCcCC
Confidence 21 1 145778885 7765544 436789999999998 99999886531100 001112
Q ss_pred cceEEEEeCCCC-EEEEEeC
Q 039790 490 FNQVVALNRAGL-FLLANAK 508 (1395)
Q Consensus 490 ~~~~l~~S~dg~-~LaSgs~ 508 (1395)
+-..+++++++. ++++|-.
T Consensus 236 vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CEEEEEECTTTCCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEeCCC
Confidence 334789988655 5555543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.051 Score=70.41 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=122.8
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl 287 (1395)
....+.+++|.+.+.+|+.. ...+.|+.+++... ....+.........|++ ... ++++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv-D~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV-DWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee-eecCCcEEEEecCCCeEEEEeC
Confidence 44677899999865555544 55688999998763 23333334456778999 544 466666667789999998
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
.... ...+..........|++++.++.|+.+-.+ ..|.+++......
T Consensus 501 dG~~--------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----------------- 549 (791)
T 3m0c_C 501 KGVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------- 549 (791)
T ss_dssp TSSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----------------
T ss_pred CCCe--------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-----------------
Confidence 7543 112222333446689999988888887654 4566665532111
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..++...-...+.|++.+.+++++++=...+.|..+|+........+..... ....+|++. +.+|+.+-.
T Consensus 550 ---~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~------~~~lYwtD~ 620 (791)
T 3m0c_C 550 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF------EDKVFWTDI 620 (791)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE------TTEEEEEET
T ss_pred ---EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe------CCEEEEEEC
Confidence 1222223357889999987745555555567899999865443333332211 134566664 334555455
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
..+.|...|..++
T Consensus 621 ~~~~I~~~dk~tG 633 (791)
T 3m0c_C 621 INEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCC
Confidence 6778887777666
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.41 E-value=0.075 Score=61.20 Aligned_cols=199 Identities=8% Similarity=-0.057 Sum_probs=123.4
Q ss_pred CEEEEEEecCCCEEE-EEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYIC-YGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.+.+++|.+.+..|. +-...+.|+.++..++. ...+...-.....+++...++.++++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 456788988655554 44567889999988763 2233333345778888224566666666778999999875330
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
..+..........++++|.++.++.+.. ...|.+++...... ...+
T Consensus 114 ------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------------------~~~~ 161 (318)
T 3sov_A 114 ------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------------------FIII 161 (318)
T ss_dssp ------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------------------EEEE
T ss_pred ------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------------------EEEE
Confidence 1112233344567899998888877764 36677776532111 1122
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...-...+.|+|++++++++++=+..+.|..+|+........+.+... ....+++. .+..+++ ....+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~-----~~~lywt-d~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLF-----EDILYWT-DWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEE-----TTEEEEE-ETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEe-----CCEEEEE-ecCCCeEEEE
Confidence 222345789999997755666666678899999864333223332333 67788885 2334444 5477889999
Q ss_pred ECCCC
Q 039790 453 ASAEE 457 (1395)
Q Consensus 453 Dl~tg 457 (1395)
|..++
T Consensus 235 ~~~~G 239 (318)
T 3sov_A 235 NKYTG 239 (318)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98776
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.054 Score=67.87 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCCC---------eEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQR---------VTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~---------V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..|++++.++.|+-+|..+|+.. .+...... ...+++ .+..|+.++.|+.|+.+|..+|+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCC
Confidence 344555555445888999888532 33222110 022333 35678888899999999999998
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.083 Score=58.71 Aligned_cols=215 Identities=11% Similarity=0.099 Sum_probs=122.8
Q ss_pred EeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 252 LLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.+.+-.+.+..|+| .+++ .++++...++.|...|.. ++ .+..+.+ ......-.|++.+++.+++
T Consensus 21 ~l~g~~~~lSGla~-~~~~~~L~aV~d~~~~I~~ld~~-g~-----------v~~~i~l--~g~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 21 EIAGITNNISSLTW-SAQSNTLFSTINKPAAIVEMTTN-GD-----------LIRTIPL--DFVKDLETIEYIGDNQFVI 85 (255)
T ss_dssp ECTTCCSCEEEEEE-ETTTTEEEEEEETTEEEEEEETT-CC-----------EEEEEEC--SSCSSEEEEEECSTTEEEE
T ss_pred ECCCcccCcceeEE-eCCCCEEEEEECCCCeEEEEeCC-CC-----------EEEEEec--CCCCChHHeEEeCCCEEEE
Confidence 45566678999999 5654 456667888999999987 65 2223322 2224455788887775444
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE----cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----GKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
+.-..+.++++.....+... . .. ...+ .........|+|++.+ ..|.++.......||.+
T Consensus 86 s~E~~~~l~~~~v~~~~~i~-------------~-~~-~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVK-------------I-LK-KIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EETTTTEEEEEEECTTCCEE-------------E-EE-EEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEE
T ss_pred EECCCCcEEEEEcCCCCeee-------------e-ee-eeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEE
Confidence 43345667766654332100 0 00 0001 1234567899999998 45555555444444444
Q ss_pred C---CCceeEEec-------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 407 R---KSTPLAVLR-------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 407 ~---sg~~l~tl~-------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
. .+..+..+. .+-. .+.+|+|. |....|++.+..++.|.++|.. + +.+..+.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~-d~S~l~~d----p~tg~lliLS~~s~~L~~~d~~-g------------~~~~~~~ 211 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLD-DVSGAEFN----QQKNTLLVLSHESRALQEVTLV-G------------EVIGEMS 211 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSS-CCCEEEEE----TTTTEEEEEETTTTEEEEECTT-C------------CEEEEEE
T ss_pred cccccCCceeeecchhhccccccC-CceeEEEc----CCCCeEEEEECCCCeEEEEcCC-C------------CEEEEEE
Confidence 3 122233331 1222 57899998 5544444445588999999965 3 6666666
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
...+...-...-.--..++|.++|++.++ +..+.+|.+.
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 55432100000011236999999997776 6667777665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.018 Score=69.37 Aligned_cols=158 Identities=8% Similarity=-0.028 Sum_probs=98.6
Q ss_pred CeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-
Q 039790 259 RVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN- 336 (1395)
Q Consensus 259 ~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~- 336 (1395)
....|+| .+ ++..|+.+...+.|+.+|+..+. +..+.........++|+++++.++++...+
T Consensus 138 ~P~~lav-dp~~~g~Lyv~d~~~~I~~id~~~~~---------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSF-DPKNHNHLYLVGEQHPTRLIDFEKEY---------------VSTVYSGLSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEE-ETTEEEEEEEEEBTEEEEEEETTTTE---------------EEEEECCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCEEEE-CCCCCCeEEEEeCCCcEEEEECCCCE---------------EEEEecCCCCcceEEEeCCCCEEEEEeCCCC
Confidence 5678899 65 34455555555889999988654 112222344566899999998788777632
Q ss_pred ----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 337 ----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 337 ----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
.++.++. .+.. .....+. .......++++|+++.++++-..++.|..||...+...
T Consensus 202 ~~~~~v~~~~~--~g~~-----------------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 202 NDRPNNYILTR--ESGF-----------------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp TTSEEEEEEEG--GGTS-----------------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cccceEEEEeC--CCce-----------------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 2222322 1110 0001111 12345778899944367777667889999998876542
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+..........|+|+ |+|++|+.+...++.|..|+...
T Consensus 262 ~~~~~~~~~~P~gia~~----pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFH----PSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEECSSSSCCEEEEEC----TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEcCCCCcceeEEEc----CCCCEEEEEECCCCEEEEEeCCc
Confidence 22222121267899998 99997776666889999988753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.043 Score=62.54 Aligned_cols=198 Identities=10% Similarity=0.026 Sum_probs=114.0
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CC
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GN 336 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~ 336 (1395)
....+++| .++++++++-..++.|+.||..... ..... .......+++.+++. ++++.. .+
T Consensus 32 ~~pegia~-~~~g~lyv~d~~~~~I~~~d~~g~~---------------~~~~~-~~~~p~gia~~~dG~-l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLAS-APDGTIFVTNHEVGEIVSITPDGNQ---------------QIHAT-VEGKVSGLAFTSNGD-LVATGWNAD 93 (306)
T ss_dssp CCEEEEEE-CTTSCEEEEETTTTEEEEECTTCCE---------------EEEEE-CSSEEEEEEECTTSC-EEEEEECTT
T ss_pred CCcceEEE-CCCCCEEEEeCCCCeEEEECCCCce---------------EEEEe-CCCCceeEEEcCCCc-EEEEeccCC
Confidence 45778999 7788877777788999999876421 11111 123466789999987 444443 22
Q ss_pred --eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eE
Q 039790 337 --RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LA 413 (1395)
Q Consensus 337 --~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~ 413 (1395)
.+++++... +... .+..+ ........+++.+++ ..+++-..++.|.++|...+.. +.
T Consensus 94 ~~~v~~~d~~~-g~~~-----------------~~~~~-~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 94 SIPVVSLVKSD-GTVE-----------------TLLTL-PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp SCEEEEEECTT-SCEE-----------------EEEEC-TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cceEEEEcCCC-CeEE-----------------EEEeC-CCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEE
Confidence 366665422 1110 00111 112233455555544 4555555688999999876531 21
Q ss_pred EecC-------CCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 414 VLRP-------YDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 414 tl~~-------h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
...+ ... .....| + +++++|+.+...++.|..||+... +.. .....+... ...
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s----~dg~~lyv~d~~~~~I~~~~~~~~-g~~--------~~~~~~~~~-~~P--- 214 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--K----RFGNFLYVSNTEKMLLLRIPVDST-DKP--------GEPEIFVEQ-TNI--- 214 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--E----EETTEEEEEETTTTEEEEEEBCTT-SCB--------CCCEEEEES-CCC---
T ss_pred EECCccccccccCCCCcCCCc--C----cCCCEEEEEeCCCCEEEEEEeCCC-CCC--------CccEEEecc-CCC---
Confidence 1110 011 134555 6 788888777778899999998751 100 011111110 111
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..++++++|+++++....+.|++|+..
T Consensus 215 ------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 215 ------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 138889999998888888899998853
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.06 Score=67.46 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
+|+.++.+|.++++|..+|+.+..+...
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEECCCceEEEEECCCCCEecccccc
Confidence 7888999999999999999988776543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.008 Score=77.96 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=90.8
Q ss_pred CeEEEEEee-CCCCEEEEEEC-CC----cEEEEECCCC-CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 259 RVTDMAFFA-EDVHLLASASV-DG----RFFIWNITEG-PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 259 ~V~slaf~s-~dg~~LaSgs~-Dg----tV~IWdl~tg-~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
.+...+| + +||++|+-+.. +| +|+++|+.++ +... . . +. .....+.|+|+++.|+.
T Consensus 175 ~~~~~~~-S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~-~---~~------~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 175 DVMEVKP-APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------D-K---VS------GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEEEEE-CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------C-C---EE------EECSCCEECSSTTEEEE
T ss_pred EEeeeEe-cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------c-c---cc------CceeeEEEecCCCEEEE
Confidence 6788999 8 99998875543 33 5999999988 5110 0 0 10 01246889999998888
Q ss_pred EEeCC-----eEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeC---CCcEE
Q 039790 332 LAIGN-----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASL---DGTVK 402 (1395)
Q Consensus 332 ~g~~~-----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~---Dg~Ir 402 (1395)
+..+. .+++++...... ....++. .+......+.|+||| ++|+..+. ...|.
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~------------------~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~ 298 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQS------------------EDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVH 298 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGG------------------GCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEE
T ss_pred EEECCCCCCCEEEEEECCCCch------------------hcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEE
Confidence 87642 344443321100 0022222 233456789999999 66655442 34588
Q ss_pred EEeCCCCc-ee--EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCC
Q 039790 403 IWDDRKST-PL--AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAE 456 (1395)
Q Consensus 403 IWDl~sg~-~l--~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~t 456 (1395)
++|+.++. .. ..+........+++.|. . |..|+..+..+ ..|.++|+.+
T Consensus 299 ~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~----~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEIVRPREKGVRYDVQMH----G-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEESSSCTTCCCEEESSCCCTTCCEEEEEE----T-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEECCCCCCCceeEEeecCCCCceEEEeee----e-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 89988762 22 44433322266777775 3 55444434243 3566666654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.09 E-value=0.28 Score=66.18 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred CCCEEEEEEecC------CCEEEEEEc-CCeEEEEECCCCceE---EeccCCCCeEEEEEee-CCCCEEEEEECCCcEEE
Q 039790 216 PGLVLGRQIAVN------RNYICYGLK-LGNIRILNIITALRS---LLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spd------g~~LasGs~-DG~IrIWd~~~~~~~---~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~I 284 (1395)
...|.|+++.+. ++++|.|++ |++|+|+++.+-... .+.+ .....++.+.. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 467999998863 479999997 999999999864322 2221 22445555522 23457889999999876
Q ss_pred EECC--CCCCCCCCcccccceEEEE-EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 285 WNIT--EGPDEEDKPQILGKIVVAI-QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~--tg~~~~~~~~~~~~~i~~l-~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+. +|. ....- .+.+ ...+.-..+...+..-+.++++.-.+.+.... +
T Consensus 632 ~~~d~~tg~-----------l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~--~------------- 683 (1158)
T 3ei3_A 632 FGLNIETGL-----------LSDRKKVTLG--TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH--K------------- 683 (1158)
T ss_dssp EEECTTTCC-----------EEEEEEEECC--SSCCEEEEEESSSCEEEEEESSSCEEEEESSS--S-------------
T ss_pred EEEcCCCCc-----------cccceeEEcC--CCceEEEEEeeCCceeEEEECCCCEEEEEcCC--c-------------
Confidence 6654 333 11111 1222 23333333444443333333333333333211 1
Q ss_pred ccccccceEEEcccCCCe-EEEEEecCC-CcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 362 VDELINGVQLVGKHDGEI-TELSMCQWL-TTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V-~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
+....-....+ ....|+... +.-++.. .++.++|.-+..-. .++++.-. ..+..++|. |+.+
T Consensus 684 -------l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~--~Tprri~y~----~~~~ 749 (1158)
T 3ei3_A 684 -------LVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLY--ESPRKICYQ----EVSQ 749 (1158)
T ss_dssp -------EEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECS--SEEEEEEEE----GGGT
T ss_pred -------eEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCC--CCceEEEEc----CCCC
Confidence 11100011122 223343221 1234433 34568888765432 23344332 268888887 6666
Q ss_pred EEEEEecCC------C------------------------------------------eEEEEECCCCCCCCCCCCcccc
Q 039790 438 VLITGGPLN------R------------------------------------------ELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 438 ~L~s~Gs~D------g------------------------------------------~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
.++.+.+.. + .|++.|- .+|
T Consensus 750 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp------------~t~ 817 (1158)
T 3ei3_A 750 CFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ------------HTF 817 (1158)
T ss_dssp EEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET------------TTC
T ss_pred EEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC------------CCC
Confidence 554433111 1 1222222 344
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEe----------CCCeEEEEEcCCCCCCCCcceeeeeeeeccc
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANA----------KKNAIYAIHMDYGPNPASTRMDYIAEFTVTM 538 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs----------~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~ 538 (1395)
+.+..+....... ..-...+.|..+ ..+|+.|+ ..|.|++|++.. .++..+.+....+
T Consensus 818 ~~i~~~~l~~nE~-----~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~------~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 818 EVLHAHQFLQNEY-----ALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD------GKLQTVAEKEVKG 886 (1158)
T ss_dssp CEEEEEECCTTEE-----EEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET------TEEEEEEEEEESS
T ss_pred eEEEEEeCCCCcc-----eEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC------CEEEEEEEEEcCC
Confidence 5555555543221 111122334333 46777776 457899999972 2677777777777
Q ss_pred cEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 539 PILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 539 ~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
++.++....-..+++-...|+||++..++..
T Consensus 887 ~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 887 AVYSMVEFNGKLLASINSTVRLYEWTTEKEL 917 (1158)
T ss_dssp CEEEEEEETTEEEEEETTEEEEEEECTTSCE
T ss_pred cCEEEeeeCCEEEEEcCCEEEEEECCCCceE
Confidence 7777665441222344568999999876533
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.42 Score=60.35 Aligned_cols=230 Identities=10% Similarity=-0.024 Sum_probs=138.4
Q ss_pred CEEEEEEcCCeEEEEECCCCceE-Ee-ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRS-LL-RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~-~l-~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.+|+.+ ..+.|+..|+++.... .+ ...-..+..|+|...++.++++-..++.|+.+++.....
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-------------- 71 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-------------- 71 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--------------
Confidence 455555 4578999999876422 21 122346889999444556666666788999999875431
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
..+..........+++...++.++.+-.. +.|.+++...... ..++...-.....|++.
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--------------------~~l~~~~l~~P~~iavd 131 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--------------------QVLVWKDLDSPRALALD 131 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--------------------EEEECSSCCCEEEEEEE
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--------------------EEEEeCCCCCcccEEEc
Confidence 11222222345678888888878777654 4555555422111 11222334567899999
Q ss_pred cCCCcEEEEE-eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 386 QWLTTRLASA-SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 386 pdg~~~LaSg-s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
|..+.++++- +..+.|...++........+. .-. ....|+++ +++..|..+-...+.|..+|+...
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~-~P~GlalD----~~~~~LY~aD~~~~~I~~~d~dG~------- 198 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVG-RANGLTID----YAKRRLYWTDLDTNLIESSNMLGL------- 198 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCS-SEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC-------
T ss_pred cCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCC-CcceEEEc----cccCEEEEEECCCCEEEEEcCCCC-------
Confidence 8654555543 225678888875444333333 233 78999999 877777777767889999998654
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.. ..+....... ..+++.. +.++++....+.|+..|..+|..
T Consensus 199 -----~~-~v~~~~l~~P---------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 199 -----NR-EVIADDLPHP---------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp -----SC-EEEEECCSCE---------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred -----ce-EEeeccCCCc---------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 11 1222111111 1355544 56667777788899888777653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.12 Score=59.64 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=124.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCC----CC---E-EEEEEC--CCcEEEEECC--CCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAED----VH---L-LASASV--DGRFFIWNIT--EGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~d----g~---~-LaSgs~--DgtV~IWdl~--tg~~~~ 294 (1395)
...+++...+.+.+.|||+....+..+.. +.++.+.. -++ |. + +++.-. +++|++|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~-r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--- 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDI-RYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--- 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEE-EEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEE-ecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence 34556666778899999996666666653 66777776 332 22 2 334434 5789999874 332
Q ss_pred CCcccccceEEEEEEec-------CCCCCccEEEE--eCCCC--eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 295 DKPQILGKIVVAIQILA-------DGDSVHPRVCW--HPHKQ--EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~--sp~~~--~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+.... .....++.+|+ ++..+ ++|+...++.+..|.....+.+..
T Consensus 113 ------------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------ 168 (355)
T 3amr_A 113 ------------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------ 168 (355)
T ss_dssp ------------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------
T ss_pred ------------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------
Confidence 11111 11255666777 66544 577777778787776644322100
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-----CCceeEEec-CCCCCCeeEEEEeecCCCCCc
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-----KSTPLAVLR-PYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-----sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..+.++.|. ....+-.|.+.+.. .+|..+-.|.-|..||.+ +++.+..+. ++-...+..|++-+. ++++
T Consensus 169 -~~~lVR~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~--~~g~ 243 (355)
T 3amr_A 169 -SGKKVRAFK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA--ADGK 243 (355)
T ss_dssp -EEEEEEEEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC--GGGC
T ss_pred -cceEEEEec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec--CCCC
Confidence 011134444 34578888888876 688888888766666754 345665553 332225788887411 4555
Q ss_pred -EEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEec
Q 039790 438 -VLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 438 -~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
||++++-.++++.+||.. +. +.+..|..
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~------------~~vg~f~I 273 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKN------------KYVADFRI 273 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTC------------CEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCC------------cEEEEEEe
Confidence 677766578899999986 33 66777753
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.038 Score=66.66 Aligned_cols=209 Identities=8% Similarity=-0.062 Sum_probs=118.6
Q ss_pred CeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 259 RVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 259 ~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
....|+| .++ ...|+.+...+.|+.+|..++. +..+.........++|++++. ++++...+
T Consensus 140 ~P~gvav-d~~s~~g~Lyv~D~~~~I~~id~~~g~---------------v~~~~~~~~~P~giavd~dG~-lyVad~~~ 202 (433)
T 4hw6_A 140 NIWRMMF-DPNSNYDDLYWVGQRDAFRHVDFVNQY---------------VDIKTTNIGQCADVNFTLNGD-MVVVDDQS 202 (433)
T ss_dssp CCCEEEE-CTTTTTCEEEEECBTSCEEEEETTTTE---------------EEEECCCCSCEEEEEECTTCC-EEEEECCS
T ss_pred CCceEEE-ccccCCCEEEEEeCCCCEEEEECCCCE---------------EEEeecCCCCccEEEECCCCC-EEEEcCCC
Confidence 4678999 653 3445555444899999997765 222222344567899999998 66666532
Q ss_pred -----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 337 -----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 337 -----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
.++.+.... . | .....+. .......++++++++.++++-..++.|+.||..++..
T Consensus 203 ~~~~~gv~~~~~~~--~---~--------------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 203 SDTNTGIYLFTRAS--G---F--------------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CTTSEEEEEECGGG--T---T--------------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CcccceEEEEECCC--C---e--------------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 233332210 0 0 0001111 2344567889994436666666778999999887766
Q ss_pred eEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-C--cccc---c
Q 039790 412 LAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-S--SAEL---R 484 (1395)
Q Consensus 412 l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~--~~i~---~ 484 (1395)
...+ .......-..|+|+ |+|++|..+...++.|+.+++....+.+ ....++.+. . +... .
T Consensus 263 ~~~~~~~~~~~~~~~ia~d----pdG~~LYvad~~~~~I~~~~~d~~~~~~--------~~~~~~ag~~g~~g~~dg~~~ 330 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWH----PTGDWAYIIYNGKHCIYRVDYNRETGKL--------AVPYIVCGQHSSPGWVDGMGT 330 (433)
T ss_dssp EEEEEECSCCSSCEEEEEC----TTSSEEEEEETTTTEEEEEEBCTTTCCB--------CCCEEEEECTTCCCCBCEEGG
T ss_pred EEEEeccCCCCCcccEEEe----CCCCEEEEEeCCCCEEEEEeCCCCCccc--------CcEEEEEecCCCCccCCCccc
Confidence 3333 21111144579999 9999777766678999998875320100 011222221 0 0000 0
Q ss_pred ccccccceEEEE---------eCCCCEEEEEeCCCeEEEEE
Q 039790 485 LEDAFFNQVVAL---------NRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 485 ~~~~~~~~~l~~---------S~dg~~LaSgs~Dg~I~iWd 516 (1395)
...-..-..+++ ..+|.++++-...+.|+.++
T Consensus 331 ~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 331 GARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp GSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred ceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 000001234777 77788888887788888776
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.12 Score=59.73 Aligned_cols=234 Identities=9% Similarity=-0.022 Sum_probs=122.7
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEe---ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLL---RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l---~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
...+.++.|.+ +..++ ++.+|.|.. ..+.|.. ..+ ..+.+.+..|.+ ..++.+++.+ .+|.|+. ..+.|+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~-~~~~~~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKA-LGNGSAEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEE-EETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEE-ECCCCEEEEe-CCccEEE-EcCCCC
Confidence 34678888875 44444 455675543 3333421 111 124456888888 4555555544 5665432 122232
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+. . ........+..+.+.+++ .+++++..+.+++-++.... . |. ..
T Consensus 153 ----------tW~-~--~~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~---t-----------W~-----~~ 199 (327)
T 2xbg_A 153 ----------NWQ-A--LVQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQT---A-----------WE-----PH 199 (327)
T ss_dssp ----------SEE-E--EECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCS---S-----------CE-----EE
T ss_pred ----------CCE-E--eecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCC---c-----------ee-----EC
Confidence 011 1 112233456678888876 46677777777776542111 1 11 11
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-C--CCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-P--YDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
-......+..+++.+++ .++ .++.+|.+++++...|+.-..+. + .....+.+|.|. +++..+++ | .++.
T Consensus 200 ~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~----~~~~~~~~-g-~~g~ 271 (327)
T 2xbg_A 200 NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR----TPNEVWLA-G-GAGA 271 (327)
T ss_dssp ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES----SSSCEEEE-E-STTC
T ss_pred CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec----CCCEEEEE-e-CCCe
Confidence 12345678899999887 444 45568888887533233222222 1 011258899997 77776665 5 5777
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
| ++..+.+ .+|..+........ .+ ..+.|..++. +++++.+|.|+-++
T Consensus 272 i-~~S~DgG---------~tW~~~~~~~~~~~-------~~--~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGG---------QTWQQDVDVKKVPS-------NF--YKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTT---------SSCEECGGGTTSSS-------CC--CEEEEEETTE-EEEECSTTEEEEEC
T ss_pred E-EEeCCCC---------cccEEcCccCCCCC-------Ce--EEEEEECCCc-eEEEcCCceEEEEc
Confidence 7 4555555 44443211000011 11 1366654554 55667788776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=1.5 Score=55.14 Aligned_cols=351 Identities=10% Similarity=0.050 Sum_probs=176.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+..+..+...-....++++++++..|..+ ...+.|..+|++......+...-.....|++ .. +.++++-...+.|.
T Consensus 154 dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav-~~-~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 154 DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ-YQ-DYIYWTDWSRRSIE 231 (628)
T ss_dssp TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEE-ET-TEEEEEETTTTEEE
T ss_pred CCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEE-EC-CEEEEecCCCCEEE
Confidence 333344444455678899999987777776 4568899999987654555555556678888 33 45566665678899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCC------C-----CCccEEEEeCC-CCe----------------------E
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADG------D-----SVHPRVCWHPH-KQE----------------------I 329 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~------~-----~~v~~v~~sp~-~~~----------------------l 329 (1395)
..|..+|+.......... ....+.++... . .....+|.... +.+ +
T Consensus 232 ~~dk~tg~~~~~l~~~~~-~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 310 (628)
T 4a0p_A 232 RANKTSGQNRTIIQGHLD-YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310 (628)
T ss_dssp EEETTTCCSCEEEECSCC-SCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred EEECCCCCceEEEecCCC-CcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence 999877753211100000 01122222210 0 01111232221 111 1
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
+..+....|.++..... ......+. ..-..+..|+|.+.++.++++=...+.|+.++...
T Consensus 311 Ll~s~~~~i~~i~l~~~-------------------~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g 371 (628)
T 4a0p_A 311 LLFSQKSAINRMVIDEQ-------------------QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG 371 (628)
T ss_dssp EEEEETTEEEEECCCTT-------------------CCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeeeccceEEEEecccc-------------------cCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCC
Confidence 11222222222211100 00001111 12245788999987645555555578899998765
Q ss_pred CceeEEecC------CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-Ccc
Q 039790 409 STPLAVLRP------YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSA 481 (1395)
Q Consensus 409 g~~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~ 481 (1395)
......+.. ... .+..|++. ..++.|..+.+..+.|.+.++.. +....+... ...
T Consensus 372 ~~~~~v~~~~~~~~~~~~-~p~glAvD----~~~~nLY~td~~~~~I~v~~~~G-------------~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 372 SQGFTVVVSSVPSQNLEI-QPYDLSID----IYSRYIYWTCEATNVINVTRLDG-------------RSVGVVLKGEQDR 433 (628)
T ss_dssp CSCEEEEC--------CC-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTS-------------CEEEEEEECTTCC
T ss_pred CCceEEEEcccccccccC-CcceEEee----ccCCeEEEEcCCCCEEEEEECCC-------------CeEEEEEeCCCCc
Confidence 443333332 122 68899998 77777766666888999998853 333333221 111
Q ss_pred cccccccccceEEEEeC-CCCEEEEEeCCC--eEEEEEcCCCCCCCCcceeeeeeeecccc-EEEEecCCCCcC--c-CC
Q 039790 482 ELRLEDAFFNQVVALNR-AGLFLLANAKKN--AIYAIHMDYGPNPASTRMDYIAEFTVTMP-ILSLTGTTTDAS--P-DG 554 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg--~I~iWdl~~g~~~~~~~~~~i~~f~~~~~-ils~~~~~~d~~--~-s~ 554 (1395)
...+++.| .|.++++..... .|+..+++ |.. +...+.. ....| -+.++... ..+ + ++
T Consensus 434 ---------Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~----~~~l~~~-~l~~P~gla~D~~~-~~LYw~D~~ 497 (628)
T 4a0p_A 434 ---------PRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTE----REVLFFS-GLSKPIALALDSRL-GKLFWADSD 497 (628)
T ss_dssp ---------EEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCS----CEEEECS-SCSCEEEEEEETTT-TEEEEEETT
T ss_pred ---------eeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCC----cEEEEec-cCCCccEEEEeCCC-CEEEEEeCC
Confidence 12477777 677666655444 45555554 221 1111111 11111 23444332 111 2 23
Q ss_pred CCeEEEEEcCCCceeeec---ccceEEecCCCCCeecccCCCceEEEeecCCCCcceeec
Q 039790 555 EHIVQIYCVQTQAIQQYA---LDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 555 dg~V~lWdv~t~~i~~~~---~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
.+.|+.+++......... +....-++...+.+-++......+...|-.+|+..+.+.
T Consensus 498 ~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 498 LRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 467777777654332211 111222222335555555555555566766666555544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.25 Score=60.16 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=98.0
Q ss_pred CeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC-CCCCccEEEE-------eCCCCe
Q 039790 259 RVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCW-------HPHKQE 328 (1395)
Q Consensus 259 ~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~-------sp~~~~ 328 (1395)
....|+| .+ +++++++....+.|++.|+..+. +..+..... .-.....++| ++++..
T Consensus 140 ~p~~la~-dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAF-DPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEE-ETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEE-ccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCccccCCCcEEEEeecccccCCCCCE
Confidence 5678999 65 35555555555778889988765 112211111 1223567999 999987
Q ss_pred EEEEEeCC-------eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 329 ILMLAIGN-------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 329 lla~g~~~-------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
++++...+ .+.+++....+. |... .. ...+.. ......++++|+++.++++-..++.|
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~---~~~~----------~~-~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V 271 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGT---FDDR----------SD-IQLIAA-YKQCNGATIHPINGELYFNSYEKGQV 271 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSC---CSTT----------SC-EEEEEE-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCc---eeec----------cc-ceeecc-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence 88877664 244443211111 1000 00 011111 12345778899765777777788899
Q ss_pred EEEeCC-------CCce-----------eEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 402 KIWDDR-------KSTP-----------LAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 402 rIWDl~-------sg~~-----------l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
..||+. ++.. +.. +....+.+.+.|+|+ |+|.+|..+-..++.|+.+|..
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~----p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH----PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC----TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEc----CCCCEEEEEeCCCCEEEEEecC
Confidence 999987 5543 122 222222267899999 9999766666688999997654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.32 Score=56.66 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe------ccCCCCeEEEEEeeCC----CCEEEEEECC-----C
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL------RGHTQRVTDMAFFAED----VHLLASASVD-----G 280 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l------~~H~~~V~slaf~s~d----g~~LaSgs~D-----g 280 (1395)
-..-.+++|.++|+++++ ..+|.|++++ ++....+ .........|+| +++ +.+.++-..+ +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~-~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLAL-HPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEE-CCCCCCCCEEEEEEecCCCCCcc
Confidence 456779999999995555 5669999998 4432211 122356889999 776 4444444432 6
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEE
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g 333 (1395)
.|..|+...+. .. .....+.-+. ........++|.+++..+++.+
T Consensus 106 ~v~r~~~~~~~-------~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGER-------GV-LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSC-------EE-EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCC-------cC-ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 78888876432 00 0001111122 2222345899999995444433
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.29 Score=56.37 Aligned_cols=193 Identities=11% Similarity=0.024 Sum_probs=103.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..+.+|.|..++..+++ +.+|.| ++..+.|. ...+. .....+.+|.| .+ +..+ .++.+|.|+. ..+.|+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~-~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSF-QG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEE-ET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEe-cC-CeEE-EEECCCeEEE-ECCCCC
Confidence 46888888877777775 456765 33344442 22121 23446899999 54 4444 4556675544 223333
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.-. .+.........+..+.+..++ .+++++..+.+++-++. +. . | ...
T Consensus 110 tW~-----------~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~v~~S~Dg--G~--t-----------W-----~~~ 157 (327)
T 2xbg_A 110 SWS-----------QIPLDPKLPGSPRLIKALGNG-SAEMITNVGAIYRTKDS--GK--N-----------W-----QAL 157 (327)
T ss_dssp SCE-----------ECCCCTTCSSCEEEEEEEETT-EEEEEETTCCEEEESST--TS--S-----------E-----EEE
T ss_pred Cce-----------ECccccCCCCCeEEEEEECCC-CEEEEeCCccEEEEcCC--CC--C-----------C-----EEe
Confidence 100 000000111223456655544 56666666665554331 11 1 1 122
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
...+...+..+++.+++ .+++.+...+..+-+|- .+.+.+. ..... .+..+.+. +++..+++ + .+|.|
T Consensus 158 ~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~-~~~~~~~~----~~g~~~~~-~-~~G~~ 227 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSR-RLHNMGFT----PDGRLWMI-V-NGGKI 227 (327)
T ss_dssp ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEEE--CCSSS-CEEEEEEC----TTSCEEEE-E-TTTEE
T ss_pred ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeECC--CCCCC-ccceeEEC----CCCCEEEE-e-CCceE
Confidence 23455678999999987 67766654444444552 3334332 22333 78999998 88876655 5 68888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
++++...+
T Consensus 228 ~~s~~D~G 235 (327)
T 2xbg_A 228 AFSDPDNS 235 (327)
T ss_dssp EEEETTEE
T ss_pred EEecCCCC
Confidence 88753334
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0057 Score=78.56 Aligned_cols=199 Identities=12% Similarity=-0.009 Sum_probs=115.2
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCC----Cc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIIT----AL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~----~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..+.+++|.+.+..|+.. ...+.|+.+++.+ .. ...+...-.....|++....++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 445678899877666665 4568899999876 22 22222222345667872245666666666788999998754
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
. ...+..........++++|.+++|+.+..+ +.|.+++......
T Consensus 486 ~--------------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-------------------- 531 (699)
T 1n7d_A 486 K--------------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------------- 531 (699)
T ss_dssp C--------------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------------------
T ss_pred c--------------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------------------
Confidence 3 111222222344578888877777665533 3444443321110
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..++...-...+.|+|++++++++++-+..+.|..+|+.... .+.+.. ... ....|++. .+ .|+.+...
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~-~P~glavd----~~--~lywtd~~ 603 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLA-HPFSLAVF----ED--KVFWTDII 603 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCS-SCCCCEEE----TT--EEEEECST
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCC-CceEeEEE----CC--EEEEEeCC
Confidence 111111223567899999875677776677899999986433 333321 112 45567775 33 34443446
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
.+.|..+|..++
T Consensus 604 ~~~V~~~d~~~G 615 (699)
T 1n7d_A 604 NEAIFSANRLTG 615 (699)
T ss_dssp TTCEEEEETTTE
T ss_pred CCeEEEEEccCC
Confidence 788999988776
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.7 Score=53.87 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=107.8
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec------cCCCCeEEEEEeeCC----CCEEEEEEC---C---
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR------GHTQRVTDMAFFAED----VHLLASASV---D--- 279 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~------~H~~~V~slaf~s~d----g~~LaSgs~---D--- 279 (1395)
-....+++|.++|++++ +..+|.|+++|. ++. ..+. ........|+| .++ +.++++-.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLAL-HPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEe-CCCCCcCCEEEEEEeccCCCCCc
Confidence 35678999999998555 456699999974 443 2221 12346889999 665 444444432 3
Q ss_pred -CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCC
Q 039790 280 -GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNR 345 (1395)
Q Consensus 280 -gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~ 345 (1395)
+.|..|+...+... ......+.. .+-.........+.|.|++..+++.+. .++|++++...
T Consensus 104 ~~~v~r~~~~~~~~~----~~~~~~l~~-~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFK----LKEVKTLID-GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEEEEEECSSSCC----EEEEEEEEE-EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred ceEEEEEEECCCCcC----cCccEEEEE-cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 56777777643100 000011111 111122223457999999964444443 14566665432
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeC--------CCC-----
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDD--------RKS----- 409 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl--------~sg----- 409 (1395)
.- ..+.++. .......+|. ....|+|+++.+.++++-...+ .|.+..- ..+
T Consensus 179 ~~-----p~~npf~-------~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~ 245 (354)
T 3a9g_A 179 RP-----PADNPFP-------NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG 245 (354)
T ss_dssp CC-----CTTSSST-------TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CC-----CCCCCCC-------CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence 10 0011100 0011222343 3567999994335555433222 2333221 000
Q ss_pred ---ceeEEe-cCCCCCCeeEEEEeecCC---CCCcEEEEEecCCCeEEEEECCC
Q 039790 410 ---TPLAVL-RPYDGHPVNCVTFLIGPH---PQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 410 ---~~l~tl-~~h~~~~V~sV~fs~~~~---pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.++..+ ..|. ....++|..... .+|.++++ ....+.|...++..
T Consensus 246 ~~~~p~~~~~~~~~--ap~G~~~y~g~~fp~~~G~l~v~-~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 246 EFVDPVIDTGSETW--APSGASFVHGDMFPGLRGWLLIA-CLRGSMLAAVNFGD 296 (354)
T ss_dssp TSCCCSEECTTCCC--CEEEEEECCSSSCGGGTTEEEEE-ETTTTEEEEEEECG
T ss_pred CCcCCEeecCCCCc--CCcceEEECCCCCcccCCcEEEE-EcCCCEEEEEEECC
Confidence 234444 3332 578888841100 35655554 43667787777764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0074 Score=77.50 Aligned_cols=183 Identities=7% Similarity=-0.107 Sum_probs=100.6
Q ss_pred CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.+.|++.++.+.....+......+..|+| .+.+. ++++-...+.|+.+++......... ..++.....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~-d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~----------~~~i~~~~~ 453 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDT-EVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------DTVISRDIQ 453 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEE-ETTTTEEEECCTTTTSBEEEESCCCCC-CCC----------CCBCCSCC-
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcc-ccccCeEEEEecCCCeEEEEecCCCCCCcce----------EEEEeCCCC
Confidence 46788888887755444444456778999 55444 4444455688999998751100000 000111111
Q ss_pred CccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeEEEEEecCCCcEEE
Q 039790 316 VHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~slafspdg~~~La 393 (1395)
....+++.+.++.|+++-. .+.|.+++..... ...+ .........|++.|.++.+++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---------------------~~~l~~~~~~~P~giavDp~~g~ly~ 512 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------------------RKTLFREQGSKPRAIVVDPVHGFMYW 512 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---------------------EEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---------------------eEEEEeCCCCCcceEEEccCCCcEEE
Confidence 2335667655555655533 3455555432111 1111 112234577889887645555
Q ss_pred EEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 394 SASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 394 Sgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+-... +.|..+++... ....+....-.....|+|+ +++..|+.+-...+.|.++|+..
T Consensus 513 td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd----~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 513 TDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLD----LLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEEC----TTTCCEEEEETTTTEEEEECSSS
T ss_pred cccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEe----ccCCEEEEEecCCCeEEEEccCC
Confidence 54333 67888776533 2333321222267889998 88776666666788999999864
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.27 Score=62.51 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=41.3
Q ss_pred EEEEeeC-CCCEEEEEECCC-----------cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 262 DMAFFAE-DVHLLASASVDG-----------RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 262 slaf~s~-dg~~LaSgs~Dg-----------tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
.+++ .+ ++++++.|+.++ .+.+||+.+++.... ......+......+++..++..+
T Consensus 190 ~~av-~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-----------~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 190 AAAI-EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-----------TVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp EEEE-ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-----------EEEECSCCCSSCEEEECTTSCEE
T ss_pred eEEE-EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-----------cccCCCCCCccccccCCCCCCEE
Confidence 5566 44 888999888653 588999998762211 11112222333356777777655
Q ss_pred EEEEeC-CeEEEEEcC
Q 039790 330 LMLAIG-NRILKIDSN 344 (1395)
Q Consensus 330 la~g~~-~~ii~~d~~ 344 (1395)
+++|.+ ..+.+||..
T Consensus 258 v~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSS 273 (656)
T ss_dssp EECSSSTTCEEEEEGG
T ss_pred EeCCCCCCceEEecCc
Confidence 555533 456666653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.52 Score=59.39 Aligned_cols=226 Identities=7% Similarity=-0.047 Sum_probs=124.2
Q ss_pred CCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 237 LGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 237 DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
...|++.|+... ....+...-.....|+|...++.++++=...+.|+.+++..... ...+....-
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-------------~~~v~~~~~ 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-------------VQNVVVSGL 83 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSSC
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-------------eEEEEeCCC
Confidence 467889998865 23333344456889999434454555545567888888875420 011222222
Q ss_pred CCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
.....++++..++.++.+... +.|.+++...... ..++...-.....|++.|.++.+++
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--------------------~~l~~~~l~~P~~Iavdp~~g~ly~ 143 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------KVLFWQELDQPRAIALDPSSGFMYW 143 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSCCCCEEEETTTTEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--------------------EEEEeCCCCCCceEEEecCCCeEEE
Confidence 445678999888878777654 4555555432111 1122233445778999997645555
Q ss_pred EEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 394 SAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 394 Sgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
+-- ..+.|...++. |.....+..........|+++ +++..|..+-...+.|...|+... ...
T Consensus 144 tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald----~~~~~LY~aD~~~~~I~~~~~dG~------------~~~ 206 (619)
T 3s94_A 144 TDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGT------------NRQ 206 (619)
T ss_dssp EECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEE----TTTTEEEEEETTTCCEEEESSSCC------------EEC
T ss_pred eccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEE----ccCCEEEEEeCCCCeEEEecCCCC------------ccE
Confidence 532 23567666754 333333322222378999998 877777766667888999888654 111
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..+...... . ..+++..+ .++++....+.|...|..+|+.
T Consensus 207 ~~~~~~~~~------P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 207 AVVKGSLPH------P---FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ---------------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEeCCCCC------c---eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 111111101 1 12555444 5566666778888888877653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.61 Score=54.10 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCC----CCEEEEEE--CCCcE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAED----VHLLASAS--VDGRF 282 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~d----g~~LaSgs--~DgtV 282 (1395)
-..-++++|.+||+++++--..|.|++++..++....+ ....+....|+| +++ +.+.++-+ .++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~-~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL-SPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE-CTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe-ccccccCCEEEEEEecCCCCEE
Confidence 35678999999999777765589999998766643222 123456889999 663 44444322 45566
Q ss_pred EEEECCCCCCCCCCccccc-ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILG-KIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNRVGK 348 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~-~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~~~~ 348 (1395)
.-|.+..+..... .... ..+. ..+-.........+.|.+++..+++.|. .++|++++....-
T Consensus 110 ~R~~~~~~~~~~~--~~~~~~~i~-~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i- 185 (347)
T 3das_A 110 VRMLYDEKKPSGE--QLGAPDTVF-RGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP- 185 (347)
T ss_dssp EEEEBCTTSCTTC--CBCCCEEEE-EEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB-
T ss_pred EEEEeCCCCcccc--cCCCcEEEE-EcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc-
Confidence 6676665321000 0111 1111 1111122233457999999965555553 3567777653210
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..+.++. .....-.+|. ....++|+|+| .++++
T Consensus 186 ----p~~nPf~-------~~~i~a~G~R-Np~Gla~dp~G-~L~~~ 218 (347)
T 3das_A 186 ----APGNPFP-------GSPVYSYGHR-NVQGLAWDDKQ-RLFAS 218 (347)
T ss_dssp ----CTTCSST-------TCCEEEBCCS-BCCEEEECTTC-CEEEE
T ss_pred ----cCCCCCC-------CCeEEeeCCC-CcceEEECCCC-CEEEE
Confidence 0111110 0112233554 35688999976 44444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=1.2 Score=51.69 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=107.8
Q ss_pred CEEEEEEecCCCEEEEEE------------cCCeEEEEECCCC--ceE--Eecc-----CCCCeEEEEEee-CCCC-EEE
Q 039790 218 LVLGRQIAVNRNYICYGL------------KLGNIRILNIITA--LRS--LLRG-----HTQRVTDMAFFA-EDVH-LLA 274 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs------------~DG~IrIWd~~~~--~~~--~l~~-----H~~~V~slaf~s-~dg~-~La 274 (1395)
..-++.+.++|..+++++ .+|.|.+||.++. ... .+.+ .......|.+.. .++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344566777775544441 6899999999742 222 2332 234677888743 2443 344
Q ss_pred EE-EC--CCcEEEEECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe----------------
Q 039790 275 SA-SV--DGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI---------------- 334 (1395)
Q Consensus 275 Sg-s~--DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~---------------- 334 (1395)
.+ .. +.+|.+|++..+. .....+..+. ..-...+.+.+.++|. ++++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~----------~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEE----------KSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTT----------TEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCC----------CEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhcc
Confidence 44 22 4678888887543 1112222222 2234456788888875 333332
Q ss_pred --CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cce
Q 039790 335 --GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STP 411 (1395)
Q Consensus 335 --~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~ 411 (1395)
.+.+++++.. .+..+...-..-+.++|+||+..++++-+..+.|..||+.. |..
T Consensus 200 ~~~g~vyr~d~~-----------------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l 256 (355)
T 3sre_A 200 LAWSFVTYYSPN-----------------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL 256 (355)
T ss_dssp CCCEEEEEECTT-----------------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCccEEEEEECC-----------------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence 1223333220 12222223346789999999955555556778999999863 332
Q ss_pred --eEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCC-CeEEEEEC
Q 039790 412 --LAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLN-RELKIWAS 454 (1395)
Q Consensus 412 --l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~D-g~I~IWDl 454 (1395)
.+.+. ..+ ....+++. . +|.+.+++. .+ +.|..||.
T Consensus 257 ~~~~~~~-~~g-~PDGi~vD----~e~G~lwva~~-~~g~~v~~~~P 296 (355)
T 3sre_A 257 TPLRVLS-FDT-LVDNISVD----PVTGDLWVGCH-PNGMRIFFYDA 296 (355)
T ss_dssp EEEEEEE-CSS-EEEEEEEC----TTTCCEEEEEE-SCHHHHHSCCT
T ss_pred ecCEEEe-CCC-CCceEEEe----CCCCcEEEEec-CCceEEEEECC
Confidence 23342 233 67888887 7 588777655 34 34444443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.34 E-value=2.2 Score=51.90 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=140.7
Q ss_pred CEEEEEEec-CCCEEEEE-EcCCeEEEEECCCCceEEeccC----CCCeEEEEE------eeCCCCEEEEEECCC-c---
Q 039790 218 LVLGRQIAV-NRNYICYG-LKLGNIRILNIITALRSLLRGH----TQRVTDMAF------FAEDVHLLASASVDG-R--- 281 (1395)
Q Consensus 218 ~V~~va~Sp-dg~~LasG-s~DG~IrIWd~~~~~~~~l~~H----~~~V~slaf------~s~dg~~LaSgs~Dg-t--- 281 (1395)
...+++|+| ++..|+.+ ...+.|+++|..++.+..+..- ......|+| ...++++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34445444 4447799999999876655432 235788888 235666555555443 2
Q ss_pred ---EEEEECCC-CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCC------CCccc
Q 039790 282 ---FFIWNITE-GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNR------VGKGE 350 (1395)
Q Consensus 282 ---V~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~------~~~~~ 350 (1395)
|.+++... +... .. .... .+..+. ....++++|+++.|+++... +.+.+++... .+.
T Consensus 220 ~~~V~~i~r~~~G~~~-~~--~~~~---~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~-- 287 (496)
T 3kya_A 220 SPSVYIIKRNADGTFD-DR--SDIQ---LIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG-- 287 (496)
T ss_dssp EEEEEEEECCTTSCCS-TT--SCEE---EEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC--
T ss_pred CceEEEEecCCCCcee-ec--ccce---eeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce--
Confidence 66666433 2210 00 0001 111111 23467889988788877754 5588887641 111
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCce--eEEecCC---CC---
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTP--LAVLRPY---DG--- 420 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~--l~tl~~h---~~--- 420 (1395)
.|.+..+..+ .....+... +.....+.|+|+|+|..++++-+..+.|+.+|. ..+.. ..++-+. .+
T Consensus 288 ~~tp~~~~~~---g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D 363 (496)
T 3kya_A 288 SWDPIVKNNP---NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD 363 (496)
T ss_dssp CCCCBGGGCT---TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred eecccccccc---cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence 0000000000 000111111 233456899999999324555556778988654 33322 1233221 11
Q ss_pred --------CCeeEEEEeecCC----CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-------
Q 039790 421 --------HPVNCVTFLIGPH----PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA------- 481 (1395)
Q Consensus 421 --------~~V~sV~fs~~~~----pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~------- 481 (1395)
.......+...+. .+|. |+.+-..++.|+.++. ++ .+.++-+....
T Consensus 364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-------------~v~TiaG~g~~~~~~~~~ 428 (496)
T 3kya_A 364 DVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-------------IVSTYAGRGASTSLADGN 428 (496)
T ss_dssp CBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-------------BEEEEEESCTTHHHHHSC
T ss_pred CcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-------------CEEEEecccccccccCcc
Confidence 0233233320000 1344 4444557889999983 33 24455443211
Q ss_pred ----ccc--ccccc--cceEEEEeCC-CCEEEEEeCCCeEEEEEcCC
Q 039790 482 ----ELR--LEDAF--FNQVVALNRA-GLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 482 ----i~~--~~~~~--~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~ 519 (1395)
... ..... .-..++++++ |.++++-..++.|+.++++.
T Consensus 429 ~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 429 QWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp SCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 000 00011 2346888886 88889888899999999875
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.16 Score=58.17 Aligned_cols=169 Identities=11% Similarity=0.110 Sum_probs=102.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEE-cCCeEEEEECCCCceE--Eecc----CCC--CeEEEEEe--eCCCCEEEEEE-----
Q 039790 214 SDPGLVLGRQIAVNRNYICYGL-KLGNIRILNIITALRS--LLRG----HTQ--RVTDMAFF--AEDVHLLASAS----- 277 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~~~~--~l~~----H~~--~V~slaf~--s~dg~~LaSgs----- 277 (1395)
...-.-.|..|......|..++ ..|+|..||...+... .+.+ ... .+..|.|. .+++.++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334445778988555555554 7999999999866322 2222 111 35788883 35677777544
Q ss_pred --------CCCcEEEEECC---CCCCCCCCcccccceEEEEEEecC----------CCCCccEEEEeCCCCeEEEEEeC-
Q 039790 278 --------VDGRFFIWNIT---EGPDEEDKPQILGKIVVAIQILAD----------GDSVHPRVCWHPHKQEILMLAIG- 335 (1395)
Q Consensus 278 --------~DgtV~IWdl~---tg~~~~~~~~~~~~~i~~l~~~~~----------~~~~v~~v~~sp~~~~lla~g~~- 335 (1395)
.+..|..||+. +++.. ..+.+... .-.....++..++|+.+++.+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~-----------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPV-----------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCS-----------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEE-----------EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 26779999999 66521 11111100 11235678999999877777778
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
+.|++++.... ....| .+..+ ........+.|+++|+| ++|+....+|.|..+|+...
T Consensus 159 ~~I~rV~pdG~-~~~~~-----------~~~~~---~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSADGK-TVSTF-----------AWESG---NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTTSC-CEEEE-----------EECCC---CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCCCC-EEeee-----------eecCC---CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCC
Confidence 88888876432 11111 00000 01122346789999999 66666655999999998854
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.27 E-value=1 Score=52.29 Aligned_cols=121 Identities=11% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCC----CCEEEEEEC-------
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAED----VHLLASASV------- 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~d----g~~LaSgs~------- 278 (1395)
...++++|.++|++|.++...|.|++++........+ ....+....|+| +++ +.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVL-APDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEE-CTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEE-CCCCCCCCEEEEEEeCCCCCCCc
Confidence 4567899999999344556779999998643221111 112345789999 664 544444333
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEeC-------------CeEEEEE
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAIG-------------NRILKID 342 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~~-------------~~ii~~d 342 (1395)
...|..|++..+... .. .....+.... ........+.|.|++..+++.+.. ++|++++
T Consensus 97 ~~~v~r~~~~~~~~~-----~~-~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSK-----VT-DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEECTTSSB-----EE-EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred eeEEEEEEECCCCCC-----CC-ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666666543200 00 0000111111 111223579999999544444332 4688887
Q ss_pred cC
Q 039790 343 SN 344 (1395)
Q Consensus 343 ~~ 344 (1395)
..
T Consensus 171 ~d 172 (353)
T 2g8s_A 171 DQ 172 (353)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=3.4 Score=51.90 Aligned_cols=187 Identities=8% Similarity=-0.041 Sum_probs=109.3
Q ss_pred EEEEEEcCCeEEEEECCCCce--EEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALR--SLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~--~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|+.+. .+.|+..++..... ..+. ..-..+..|+|...++.++++-...+.|+.+++.....
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------------- 383 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------------- 383 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------
T ss_pred EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--------------
Confidence 455544 35677778776531 1111 12245788999434555565655678899999875430
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
..+....-.....+++...++.++.+-.. +.|.+.+...... ..++...-....+|++.
T Consensus 384 ~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--------------------~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 384 QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--------------------KILISEDLEEPRAIVLD 443 (619)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECTTCCSEEEEEEE
T ss_pred EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--------------------EEEEECCCCCeeeEEEE
Confidence 11222223445678888877777777654 4454444322110 12222234568899999
Q ss_pred cCCCcEEEEEeC-CCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASASL-DGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs~-Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|..+.++++-.. .+.|...++. |.....+ ...-. +.+.|+++ +++..|..+-...+.|..+++...
T Consensus 444 p~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~-~P~GlalD----~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 444 PMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLG-WPNGLALD----YDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEESSSC
T ss_pred cCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCC-CCeeeEEc----ccCCEEEEEECCCCEEEEEecCCC
Confidence 975355555322 3567766654 3333333 22233 78999998 777777776667788999988543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.94 Score=52.36 Aligned_cols=131 Identities=7% Similarity=0.072 Sum_probs=76.3
Q ss_pred CCeEEEEE--ecCCC-cEEEEEeCCCcEEEEeCC-------CCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 377 GEITELSM--CQWLT-TRLASASLDGTVKIWDDR-------KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 377 ~~V~slaf--spdg~-~~LaSgs~Dg~IrIWDl~-------sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
..++.+|+ ++.++ .+++....+|.+..|++. +++.+++|.... .+..|... +....|+.+- +|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvD----d~~g~Lyv~e-Ed 200 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAAD----DEYGRLYIAE-ED 200 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEE----TTTTEEEEEE-TT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEc----CCCCeEEEec-cc
Confidence 45666777 66543 368888889999999883 346778887553 58888887 7777787755 77
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE--eCCCC-EE-EEEeCCCeEEEEEcCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL--NRAGL-FL-LANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~--S~dg~-~L-aSgs~Dg~I~iWdl~~g~~ 522 (1395)
.-|..||..-. .....+.+..+.. ...... ...+++ .++|. +| +++-.++++.+||...
T Consensus 201 ~GIw~~da~p~-------~~~~~~~v~~~~~-g~l~aD------vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~--- 263 (355)
T 3amr_A 201 EAIWKFSAEPD-------GGSNGTVIDRADG-RHLTRD------IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG--- 263 (355)
T ss_dssp TEEEEEECSTT-------SCSCCEEEEEBSS-SSBCSC------EEEEEEEECGGGCEEEEEEEGGGTEEEEEESST---
T ss_pred ceEEEEeCCcC-------CCCCceEEEEecC-CccccC------cceEEEEecCCCCEEEEEEcCCCCEEEEEECCC---
Confidence 55544453311 0012245544421 111000 123444 55555 44 4444778999999852
Q ss_pred CCCcceeeeeeee
Q 039790 523 PASTRMDYIAEFT 535 (1395)
Q Consensus 523 ~~~~~~~~i~~f~ 535 (1395)
...++..|.
T Consensus 264 ----~~~~vg~f~ 272 (355)
T 3amr_A 264 ----KNKYVADFR 272 (355)
T ss_dssp ----TCCEEEEEE
T ss_pred ----CCcEEEEEE
Confidence 233666664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.78 E-value=6.5 Score=53.04 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=81.3
Q ss_pred CeEEEE---EecCCCcEEEEEe----------CCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 378 EITELS---MCQWLTTRLASAS----------LDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 378 ~V~sla---fspdg~~~LaSgs----------~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.|++ |..+...+|+.|. ..|.|.+|++..++.....+ ..++ .|++|+-- +|+.|++
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g-~v~al~~~-----~g~Lla~-- 901 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG-AVYSMVEF-----NGKLLAS-- 901 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS-CEEEEEEE-----TTEEEEE--
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC-cCEEEeee-----CCEEEEE--
Confidence 345554 3333336888887 34789999987553222221 2245 89999864 5654443
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
..++|+||++... +.++ ..... ...+ ..+.....|.+++.|..-..|.++.+...
T Consensus 902 -ig~~l~vy~l~~~------------~~L~-~~~~~-------~~~i-~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--- 956 (1158)
T 3ei3_A 902 -INSTVRLYEWTTE------------KELR-TECNH-------YNNI-MALYLKTKGDFILVGDLMRSVLLLAYKPM--- 956 (1158)
T ss_dssp -ETTEEEEEEECTT------------SCEE-EEEEE-------CCCS-CEEEEEEETTEEEEEESSBCEEEEEEETT---
T ss_pred -cCCEEEEEECCCC------------ceEE-EEeec-------cccE-EEEEEeccCCEEEEEEhhheEEEEEEEcC---
Confidence 3589999999764 2222 11100 0001 12344445788888888888888877542
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCC
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQT 565 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t 565 (1395)
..++..++.-.....+.+......+.+ ++.+|.|.++....
T Consensus 957 -~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 -EGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -TTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred -CCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 224444443323333333332211212 34556666665443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=2 Score=49.91 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCeEEEEEecCCCcEEEEEeC-----------------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 377 GEITELSMCQWLTTRLASASL-----------------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~-----------------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+++++.++| .++++... .|.|.-||. +++.....+-. ..+.++|+ ||+++|
T Consensus 165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~--~pNGia~s----pDg~~l 235 (355)
T 3sre_A 165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFD--FANGINIS----PDGKYV 235 (355)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEES--SEEEEEEC----TTSSEE
T ss_pred CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCc--ccCcceEC----CCCCEE
Confidence 468999999998 66666541 244555554 33332333322 57899999 999998
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKK 509 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~D 509 (1395)
..+.+..+.|..||+... ......+.+... . ....+++.. +|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~---------g~l~~~~~~~~~-g---------~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHAN---------WTLTPLRVLSFD-T---------LVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTT---------SCEEEEEEEECS-S---------EEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCC---------CcEecCEEEeCC-C---------CCceEEEeCCCCcEEEEecCC
Confidence 888778899999998642 111222334221 1 123588888 59888766543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=1 Score=50.57 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=37.0
Q ss_pred CCCEEEEEE-cC-----CeEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCCCC
Q 039790 227 NRNYICYGL-KL-----GNIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs-~D-----G~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~tg~ 291 (1395)
++.+++.|+ .+ ..+.+||..++.-..+..- ......+. .++.+++.|+.+ ..+.+||+.++.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS---LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE---ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 455666666 32 4688999888753333211 11122222 367788888765 358999988765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=1 Score=50.51 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCCEEEEEEcC----CeEEEEECCCCceEEeccCCC-C-eEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 227 NRNYICYGLKL----GNIRILNIITALRSLLRGHTQ-R-VTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~D----G~IrIWd~~~~~~~~l~~H~~-~-V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
++.+++.|+.+ ..+.+||..+..-..+..-.. + -.+++. .++.+++.||.++ .+.+||..+..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCc
Confidence 34455666543 457888988875333321111 1 112222 2677788887653 58888888764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.23 E-value=2 Score=49.85 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=116.7
Q ss_pred cCCCCCeeee--CceEEEEEeccCCCccCccccccee---eeeCCCCCEEEEEEecC---CCEEEEEEc-C-----CeEE
Q 039790 176 KVPKGRHLIG--NHSVYDIDVRLDGEVQPQLEVTPIT---KYISDPGLVLGRQIAVN---RNYICYGLK-L-----GNIR 241 (1395)
Q Consensus 176 ~sp~Gr~L~G--~~~v~~v~~~~~G~~~~~~~~~~i~---~l~~h~~~V~~va~Spd---g~~LasGs~-D-----G~Ir 241 (1395)
+.|+|+++.. ...|+.++ +|.. ..+. .+........+++|+++ +.+|..+.. + +.|.
T Consensus 38 ~~pdG~l~V~e~~g~I~~i~---~g~~------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 38 FLPDGGMLIAERPGRIRLFR---EGRL------STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp ECTTSCEEEEETTTEEEEEE---TTEE------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred EcCCCeEEEEeCCCeEEEEE---CCCc------cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4577776622 35666665 3321 1111 12223457889999998 555544432 2 5677
Q ss_pred EEECCCCc----eEE---ec---cCCCCeEEEEEeeCCCCEEEEEECC-------------CcEEEEECCCCCCCCCCcc
Q 039790 242 ILNIITAL----RSL---LR---GHTQRVTDMAFFAEDVHLLASASVD-------------GRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 242 IWd~~~~~----~~~---l~---~H~~~V~slaf~s~dg~~LaSgs~D-------------gtV~IWdl~tg~~~~~~~~ 298 (1395)
.|+...+. ... +. +.......|+| .++|.++++.+.. |.|.-++... ..-...+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF-GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE-CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE-CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 88876531 111 22 11123468999 8899877765432 4555555442 10000000
Q ss_pred c----ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe---------EEEEEcCCCCccccccCCCCCccCcccc
Q 039790 299 I----LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR---------ILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 299 ~----~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~---------ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
. ....+ +...-.....++|+++.+.++++-.+.. +.++.. +....|..-.. .+.....
T Consensus 187 ~~~~~~~~~i-----~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~---G~nyGwp~~~g-~~~~~~~ 257 (352)
T 2ism_A 187 LGRRGARPEV-----YSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP---GGNYGWPRVVG-RGNDPRY 257 (352)
T ss_dssp TTCTTSCTTE-----EEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT---TCBCCTTTCCS-CCCCTTS
T ss_pred cCCCCCCccE-----EEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc---CCcCCCCcccC-CCCCCCC
Confidence 0 00001 1111122457899996556776655433 333321 11111100000 0000011
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------eEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------LAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
..+...+. +......++| .+| .++++.-..+.|...++..... ...+-...+ .+..|++. |||..+
T Consensus 258 ~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~----pdG~ly 329 (352)
T 2ism_A 258 RDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG-RLREVQVG----PDGALY 329 (352)
T ss_dssp CCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC-CEEEEEEC----TTSCEE
T ss_pred cCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCC-CeeEEEEC----CCCcEE
Confidence 22333343 3345678888 345 6777666677788777654321 122222223 78999998 999877
Q ss_pred EEEe
Q 039790 440 ITGG 443 (1395)
Q Consensus 440 ~s~G 443 (1395)
++..
T Consensus 330 v~~~ 333 (352)
T 2ism_A 330 VTTS 333 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.55 Score=53.80 Aligned_cols=174 Identities=9% Similarity=0.092 Sum_probs=99.8
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC----C--CCCccEEEE---eCC
Q 039790 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD----G--DSVHPRVCW---HPH 325 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~----~--~~~v~~v~~---sp~ 325 (1395)
.....--+++|+..++.++++.-..|+|..||...+.. ..+ .+.+ . ......+.| .++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~------------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH------------FNV-VIDGASSNGDGEQQMSGLSLLTHDNS 76 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE------------EEE-CCTTTCCSSCCSEEEEEEEESSSSSC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE------------EEE-ecCCccccCCCcceeeEEEEeccCCC
Confidence 33344557889444555555555799999999975541 111 1211 1 112357888 577
Q ss_pred CCeEEEEEe--------------CCeEEEEEcCC--CCccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCC
Q 039790 326 KQEILMLAI--------------GNRILKIDSNR--VGKGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWL 388 (1395)
Q Consensus 326 ~~~lla~g~--------------~~~ii~~d~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg 388 (1395)
+.++++.. ...++++|..- .++. .| ...+.....+.+...+.. ....+++..++|
T Consensus 77 -grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~------~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 77 -KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-VW------SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp -CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-SE------EEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred -CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-EE------EecCccccccccccccccccCCceeEECCCC
Confidence 45655444 45677777641 1110 00 000000000000000111 248899999998
Q ss_pred CcEEEEEeCC-CcEEEEeCCCCceeEEec-----CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 389 TTRLASASLD-GTVKIWDDRKSTPLAVLR-----PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 389 ~~~LaSgs~D-g~IrIWDl~sg~~l~tl~-----~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+..++++.. +.|..+|.. |+.+..+. .+.....+.++|. |+|..|++..+ +|.|..+|+..
T Consensus 149 -naYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~----pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 149 -NSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFD----PHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp -CEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEE----TTTTEEEEESS-SSSEEEEECSS
T ss_pred -CEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEe----CCCCEEEEEcC-CCeEEEEcCCC
Confidence 888888888 887777754 33333332 1112247799998 99999999885 99999999874
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=3.9 Score=47.47 Aligned_cols=209 Identities=12% Similarity=0.096 Sum_probs=105.0
Q ss_pred CCCEEEEEEecC---CCEEEEEEc----C----CeEEEEECCCC------ceEE---ec-cCCCCeEEEEEeeCCCCEEE
Q 039790 216 PGLVLGRQIAVN---RNYICYGLK----L----GNIRILNIITA------LRSL---LR-GHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 216 ~~~V~~va~Spd---g~~LasGs~----D----G~IrIWd~~~~------~~~~---l~-~H~~~V~slaf~s~dg~~La 274 (1395)
.....+++|+|+ +.+|..+.. + +.|..|+...+ .... +. +.......|+| .+||.+++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~-~pDG~Lyv 150 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF-GPDGMLYI 150 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE-CTTSCEEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE-CCCCcEEE
Confidence 356889999997 444544432 3 56777776654 1111 21 11123467999 88998777
Q ss_pred EEECC-------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----e
Q 039790 275 SASVD-------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----R 337 (1395)
Q Consensus 275 Sgs~D-------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ 337 (1395)
+.+.. |.|.-++.. +..-...+ .... .++...-.....++|+++.+.++++-.+. .
T Consensus 151 t~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np-f~~~-----~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~de 223 (354)
T 3a9g_A 151 TTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP-FPNS-----PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDE 223 (354)
T ss_dssp ECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS-STTC-----CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCE
T ss_pred EECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC-CCCC-----cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcE
Confidence 75432 344444443 21000000 0000 11111223345899999655677665542 3
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe-------cCCCcEEEEEeCCCcEEEEeCCCC-
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC-------QWLTTRLASASLDGTVKIWDDRKS- 409 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs-------pdg~~~LaSgs~Dg~IrIWDl~sg- 409 (1395)
+.++.. +....|..-... +.......++..+.........++|. .+| .++++.-..+.|...++...
T Consensus 224 i~~i~~---G~nyGwp~~~g~-~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g 298 (354)
T 3a9g_A 224 VNIILK---GGNYGWPLATGK-AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNM 298 (354)
T ss_dssp EEEECT---TCBCCTTTCCSC-CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGG
T ss_pred EEEecC---CCcCCCCcccCC-CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCC
Confidence 444422 111111100000 00001112233332223467888883 445 67777667788888887753
Q ss_pred cee--EEec-CCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 410 TPL--AVLR-PYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 410 ~~l--~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
... ..+. +... .+..|++. |||.++++.
T Consensus 299 ~~~~~~~~~~~~~~-rp~~v~~~----pDG~lyv~~ 329 (354)
T 3a9g_A 299 EVRKISTFFKNVFG-RLRDVVID----DDGGILIST 329 (354)
T ss_dssp CEEEEEEECTTTSC-CEEEEEEC----TTSCEEEEE
T ss_pred cccceeeeccCCCC-CeeEEEEC----CCCcEEEEE
Confidence 322 2332 2223 78999998 999766664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=3.6 Score=46.12 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=35.6
Q ss_pred CEEEEEEc--CCeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCC
Q 039790 229 NYICYGLK--LGNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGP 291 (1395)
Q Consensus 229 ~~LasGs~--DG~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~ 291 (1395)
.+++.|+. ...+.+||..++.-..+.. .......+.+ ++.+++.||.+ ..+.+||+.++.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 34555654 3578899998875333321 1111222233 67778888765 568889988765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.02 E-value=2.1 Score=48.20 Aligned_cols=65 Identities=14% Similarity=-0.034 Sum_probs=37.6
Q ss_pred ecCCCEEEEEEcC----CeEEEEECCCCceEEeccCCC--CeEEEEEeeCCCCEEEEEEC----C-----CcEEEEECCC
Q 039790 225 AVNRNYICYGLKL----GNIRILNIITALRSLLRGHTQ--RVTDMAFFAEDVHLLASASV----D-----GRFFIWNITE 289 (1395)
Q Consensus 225 Spdg~~LasGs~D----G~IrIWd~~~~~~~~l~~H~~--~V~slaf~s~dg~~LaSgs~----D-----gtV~IWdl~t 289 (1395)
..++.+++.|+.+ ..+.+||..++.-..+..-.. .-.+++. .++.+++.||. + ..+.+||+.+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3456677777642 468899988875433321111 1112222 26677777775 2 3588899887
Q ss_pred CC
Q 039790 290 GP 291 (1395)
Q Consensus 290 g~ 291 (1395)
..
T Consensus 100 ~~ 101 (308)
T 1zgk_A 100 NQ 101 (308)
T ss_dssp TE
T ss_pred Ce
Confidence 65
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.89 E-value=11 Score=43.52 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=44.6
Q ss_pred ceEEEcccCCCeEEEEEec-------CCCcEEEEEeCCCcEEEEeCCCCceeEE--e-cCCCCCCeeEEEEeecCCCCCc
Q 039790 368 GVQLVGKHDGEITELSMCQ-------WLTTRLASASLDGTVKIWDDRKSTPLAV--L-RPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafsp-------dg~~~LaSgs~Dg~IrIWDl~sg~~l~t--l-~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
+...+. +...+..++|.. +| .+|++.-..+.|...++..+..+.. + ..... .+..|++. |||.
T Consensus 263 P~~~~~-~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~----pdG~ 335 (353)
T 2g8s_A 263 PVFYWK-DSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ-RIRDVRTG----PDGY 335 (353)
T ss_dssp CSEEES-SCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC-CEEEEEEC----TTSC
T ss_pred CeEEeC-CCcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC-ceeEEEEC----CCCc
Confidence 344444 345678888864 34 6777777778888888776644332 2 22223 78999998 9998
Q ss_pred EEEEE
Q 039790 438 VLITG 442 (1395)
Q Consensus 438 ~L~s~ 442 (1395)
++++.
T Consensus 336 lyv~t 340 (353)
T 2g8s_A 336 LYVLT 340 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=10 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 039790 1167 STFQKGLIKHTTAIQQQFETAH 1188 (1395)
Q Consensus 1167 ~~~~~~~~e~~~~~q~~~~~~~ 1188 (1395)
+.+++.+.++..+++++++..+
T Consensus 201 e~l~~~l~~~~~~~~qq~e~f~ 222 (273)
T 3s84_A 201 EGLQKSLAELGGHLDQQVEEFR 222 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555566666666655
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.34 E-value=3.7 Score=45.82 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=38.5
Q ss_pred cCCCEEEEEEcC-----CeEEEEECCCCc---eEEeccC--CCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCC
Q 039790 226 VNRNYICYGLKL-----GNIRILNIITAL---RSLLRGH--TQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEG 290 (1395)
Q Consensus 226 pdg~~LasGs~D-----G~IrIWd~~~~~---~~~l~~H--~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg 290 (1395)
.++++++.|+.+ ..+.+||..++. -..+..- ...-.+++. .++.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 467777888765 468899988765 3333221 111112222 2677777777543 5888888775
Q ss_pred C
Q 039790 291 P 291 (1395)
Q Consensus 291 ~ 291 (1395)
.
T Consensus 139 ~ 139 (301)
T 2vpj_A 139 Q 139 (301)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=10 Score=42.64 Aligned_cols=59 Identities=5% Similarity=0.053 Sum_probs=34.0
Q ss_pred EEEEEEcCCeEEEEECCCCceE--EeccCCCCeEEEEEeeCCCCEEEEEEC----C-------CcEEEEECCCCC
Q 039790 230 YICYGLKLGNIRILNIITALRS--LLRGHTQRVTDMAFFAEDVHLLASASV----D-------GRFFIWNITEGP 291 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~----D-------gtV~IWdl~tg~ 291 (1395)
+++.|+ ..+.+||..++.-. .+.....+....+. ..++.+++.||. + ..+.+||..++.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344555 57889999887532 22222223333333 457788888884 1 127788888765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.88 E-value=3.7 Score=49.39 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE---ecc------CCCCeEEEEEeeC----CCCEEEEEEC----
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL---LRG------HTQRVTDMAFFAE----DVHLLASASV---- 278 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~---l~~------H~~~V~slaf~s~----dg~~LaSgs~---- 278 (1395)
-...++++|.++|+++++-...+.|++++..++.... +.. ..+....|+| .+ ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF-HPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE-CTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEE-CCCcCcCCEEEEEEeccccC
Confidence 3567799999999977765444578888876554322 221 2355779999 66 4444444432
Q ss_pred --------CCcEEEEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEe
Q 039790 279 --------DGRFFIWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 279 --------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
...|.-|++..+.. .. ......+..+ .........++|.+++..+++.|.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~-----~~-~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTD-----TL-EKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTT-----EE-EEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCC-----Cc-CCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23455566543220 00 0011111111 122234568999999976666554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.52 E-value=2.3 Score=50.23 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=85.9
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC
Q 039790 267 AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR 345 (1395)
Q Consensus 267 s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~ 345 (1395)
..+|..|+.+- ++.||+-++..+. . ...+.+.. -....+..+..+|+|..++.. ....+.++..-.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~---~--------Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~ 95 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS---L--------YHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPW 95 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS---S--------CEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCT
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC---c--------ceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecC
Confidence 44555555544 3577777776432 0 11122211 012256789999999755544 555666665542
Q ss_pred CCcccc-ccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCC--ceeEEecC---
Q 039790 346 VGKGER-FSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKS--TPLAVLRP--- 417 (1395)
Q Consensus 346 ~~~~~~-~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~--- 417 (1395)
...... ......+.|+.+.+.. . .......|..+.|+|.+. ..|++-..|+.||+||+... ++. .++.
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~-~--~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDE-E--EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGG-C--C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred ccccCcccccccccceeEEEcCC-c--ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 111000 0000111111111110 0 011356799999999873 38999999999999999863 333 3431
Q ss_pred ------CCCCCeeEEEEeecCCCCCcEEEEEe-cCCCeEEE
Q 039790 418 ------YDGHPVNCVTFLIGPHPQHIVLITGG-PLNRELKI 451 (1395)
Q Consensus 418 ------h~~~~V~sV~fs~~~~pdg~~L~s~G-s~Dg~I~I 451 (1395)
+. ..|.+++|. .+|-.|.... +.+|.|+-
T Consensus 172 ~fg~d~~~-~ev~S~~Fg----~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 172 SFGLDARV-NDITDLEFS----KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEESCSSC-CCEEEEEEC----TTSSCEEEEECTTSCEEEE
T ss_pred ccCCCccc-ceEEEEEEc----CCCcEEEEEecCCCCCEEE
Confidence 12 368899997 5554444321 25566643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.44 E-value=12 Score=44.16 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=53.3
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+.-.++..++.. ..+..-+.-|.|.+||+.+|.++..-+--.. .|..-+.. ....-++... ..|.|.--.++
T Consensus 258 ~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~----~~~~Gi~~Vn-r~GqVl~v~v~ 330 (494)
T 1bpo_A 258 NDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPH----EATAGIIGVN-RKGQVLSVCVE 330 (494)
T ss_dssp TCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE----TTTTEEEEEE-TTCEEEEEEEC
T ss_pred cCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCC-ceEEeccc----CCCCcEEEEc-cCceEEEEEEc
Confidence 4556678888876 5778888999999999999999988775544 67666665 4444455556 77877666655
Q ss_pred C
Q 039790 456 E 456 (1395)
Q Consensus 456 t 456 (1395)
.
T Consensus 331 e 331 (494)
T 1bpo_A 331 E 331 (494)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.35 E-value=15 Score=40.76 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 039790 1207 QTLSGELADGQRKL 1220 (1395)
Q Consensus 1207 ~~~~~e~~~~~~~~ 1220 (1395)
.++..++.++++++
T Consensus 212 ~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 212 GHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.26 E-value=4.2 Score=45.52 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=39.4
Q ss_pred cCCCEEEEEEcC----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC------CcEEEEECCCCC
Q 039790 226 VNRNYICYGLKL----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD------GRFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D------gtV~IWdl~tg~ 291 (1395)
.++.+++.|+.+ ..+.+||..++.-..+.. .......+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 467777888755 678899998874333221 1111222223 67788888765 458899988764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.26 E-value=15 Score=41.29 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=33.7
Q ss_pred cEEEEEeCC------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCC
Q 039790 390 TRLASASLD------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~D------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg 457 (1395)
.+++.|+.+ ..+.+||+.+.+-...-.......-.+++.. ++..++.+|..+ ..+.+||+.+.
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-----KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-----TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-----CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 666776642 3589999887642221111111122233332 567777776322 35678888764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.23 E-value=8.5 Score=43.51 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=112.6
Q ss_pred EecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC--------------CcEEEEEC
Q 039790 224 IAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD--------------GRFFIWNI 287 (1395)
Q Consensus 224 ~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--------------gtV~IWdl 287 (1395)
|+.+|.+|.... .++.|...+.+......+.... + .|..+++.+|+-+... +.|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--A---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--E---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--e---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456778887774 3567777777766555554321 2 3336788888877653 35677777
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE----eCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA----IGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g----~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
..+.. ..+... ....|+++++.|+.+. ....|.+++.....
T Consensus 96 dg~~~--------------~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---------------- 140 (302)
T 3s25_A 96 NGHGS--------------TVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE---------------- 140 (302)
T ss_dssp TSCCC--------------EEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC----------------
T ss_pred CCCcc--------------eEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC----------------
Confidence 65541 011111 1336777888777765 23345555543211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+..+.. .+|++++..+..+......|..-++..+.....+. + ... ..+. |++.+|+-+.
T Consensus 141 -----~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~-~~~-~~~~----P~g~~iy~t~ 202 (302)
T 3s25_A 141 -----KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C-NCY-KPVV----LDDTNVYYMD 202 (302)
T ss_dssp -----CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-CEE-EEEE----EETTEEEEEE
T ss_pred -----eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-Ccc-ceee----ecCCEEEEEE
Confidence 222322322 45677774444443335778888877665443333 2 233 3455 8888888765
Q ss_pred cCC-CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 444 PLN-RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 444 s~D-g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
..+ ..|..-++... . ...|.. .. ..+|+++|.+|..+. ..+.|+..+++
T Consensus 203 ~~~~~~I~~~~ldG~------------~-~~~Lt~--~~-----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 203 VNRDNAIVHVNINNP------------N-PVVLTE--AN-----------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp GGGTTEEEEECSSSC------------C-CEECSC--SC-----------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred cCCCcEEEEEECCCC------------C-eEEEeC--CC-----------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 222 24444444433 1 122211 10 134677788777653 24566666664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.20 E-value=20 Score=41.27 Aligned_cols=174 Identities=9% Similarity=0.009 Sum_probs=93.2
Q ss_pred eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE----EecCCCCCccEEEEeCC---
Q 039790 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ----ILADGDSVHPRVCWHPH--- 325 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~----~~~~~~~~v~~v~~sp~--- 325 (1395)
+...-..-+.|+| .++|.+|++--..|.|++++...+.. ..+. +..........|+++|+
T Consensus 27 va~gL~~P~~ia~-~pdG~llVter~~G~I~~v~~~~g~~------------~~v~~~~~v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 27 VATGLNSPWGLAP-LPGGDLLVSSRDEATITRVDAKTGRK------------TELGEVPGVSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EECCCSSEEEEEE-CTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred eecCCCCceEEEE-cCCCcEEEEEecCCEEEEEECCCCcE------------eeecccCceeecCCCCceeeEecccccc
Confidence 3333456789999 89999887776589999998665541 1111 11233455678999996
Q ss_pred CCeEEEEE---eCCeEEEEEcCCCCcc-ccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeC---
Q 039790 326 KQEILMLA---IGNRILKIDSNRVGKG-ERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASL--- 397 (1395)
Q Consensus 326 ~~~lla~g---~~~~ii~~d~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~--- 397 (1395)
++.++++- ..+.|.++........ ... .....-+..+. +.......|+|.||| .++++.+.
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~----------~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~ 162 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQL----------GAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGD 162 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCTTSCTTCCB----------CCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTC
T ss_pred CCEEEEEEecCCCCEEEEEEeCCCCcccccC----------CCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCC
Confidence 55666542 3567777765331100 000 00000011111 111235679999998 66665432
Q ss_pred ----------CCcEEEEeCCCC---------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 398 ----------DGTVKIWDDRKS---------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 398 ----------Dg~IrIWDl~sg---------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-|.|.-.+.... ..+.. .+|. ....++|. |+|.++++=-..|+-=.|--+..+
T Consensus 163 ~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~R--Np~Gla~d----p~G~L~~~d~g~~~~deln~i~~G 234 (347)
T 3das_A 163 TGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHR--NVQGLAWD----DKQRLFASEFGQDTWDELNAIKPG 234 (347)
T ss_dssp GGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCS--BCCEEEEC----TTCCEEEEECCSSSCEEEEEECTT
T ss_pred CccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCC--CcceEEEC----CCCCEEEEecCCCCCceeeEEcCC
Confidence 244444444321 11222 2564 37889998 888766653324443444444444
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.83 E-value=13 Score=44.48 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=93.1
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec------CCCCCccEEEEeCC---CC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA------DGDSVHPRVCWHPH---KQ 327 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~------~~~~~v~~v~~sp~---~~ 327 (1395)
-..-+.|+| .++|+++++-...+.|++++..++.. ..+..+. ........|+|+|+ ++
T Consensus 26 l~~P~~~a~-~pdG~l~V~e~~gg~I~~~~~~~g~~------------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 26 LNKPHALLW-GPDNQIWLTERATGKILRVNPESGSV------------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp CSSEEEEEE-CTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCCceEEEE-cCCCcEEEEEcCCCEEEEEECCCCcE------------eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 345779999 89998777654445788887655541 1111111 12344568999996 66
Q ss_pred eEEEEEeC-------------CeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEE
Q 039790 328 EILMLAIG-------------NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 328 ~lla~g~~-------------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~La 393 (1395)
.|+++... ..|.++........ + .....-+..+. ........|+|.+|| .+++
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~--~----------~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv 159 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDT--L----------EKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYY 159 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTE--E----------EEEEEEEEEECCCSSCCEEEEEECTTS-CEEE
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCC--c----------CCcEEEEEcCCCCCCCCCCeEeECCCC-eEEE
Confidence 67666542 35666654321100 0 00000011111 112347899999999 5555
Q ss_pred EEeCC--------------------------------CcEEEEeCCCCc-----------eeE-EecCCCCCCeeEEEEe
Q 039790 394 SASLD--------------------------------GTVKIWDDRKST-----------PLA-VLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 394 Sgs~D--------------------------------g~IrIWDl~sg~-----------~l~-tl~~h~~~~V~sV~fs 429 (1395)
+.+.. |.|.-+|.. |. ... --.+|. ....++|.
T Consensus 160 ~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R--Np~gla~d 236 (454)
T 1cru_A 160 TIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR--NPQGLAFT 236 (454)
T ss_dssp EECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS--EEEEEEEC
T ss_pred EECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC--CcceEEEC
Confidence 54321 333333432 22 111 123565 48899998
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++|.++++--..|+--.|.-+..+..
T Consensus 237 ----p~G~L~~~d~g~~~~dein~i~~G~n 262 (454)
T 1cru_A 237 ----PNGKLLQSEQGPNSDDEINLIVKGGN 262 (454)
T ss_dssp ----TTSCEEEEEECSSSCEEEEECCTTCB
T ss_pred ----CCCCEEEEecCCCCCeEEEEecCCCC
Confidence 88887666544666667777766643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.68 E-value=26 Score=41.48 Aligned_cols=279 Identities=15% Similarity=0.187 Sum_probs=147.9
Q ss_pred EeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEE
Q 039790 162 VVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIR 241 (1395)
Q Consensus 162 as~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~Ir 241 (1395)
+|-..|+.|++-+ ...+ ...|..++...+.. ..++--.-. +.-.+|..+.||.-. ..++.
T Consensus 30 ~TmESDkyicVrE-~~~~------~~~vvIiDl~~~~~--------~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQ 89 (494)
T 1bpo_A 30 LTMESDKFICIRE-KVGE------QAQVVIIDMNDPSN--------PIRRPISAD----SAIMNPASKVIALKA-GKTLQ 89 (494)
T ss_dssp EEEEETTEEEEEE-CCTT------CCEEEEEETTSTTS--------CEEEECCCS----EEEECSSSSCEEEEE-TTEEE
T ss_pred eeeecCceEEEEe-cCCC------CCeEEEEECCCCCc--------ceecccccc----eeeeCCCCcEEEEec-CCeEE
Confidence 4556678888777 2212 23455566543221 112111111 233577778777765 68999
Q ss_pred EEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC----CCCc
Q 039790 242 ILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG----DSVH 317 (1395)
Q Consensus 242 IWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~----~~~v 317 (1395)
|||+++.....-......|.-=.|.+++ .|+-.+ +..|+-|++.... ...+.+..| ...+
T Consensus 90 iFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s-------------~P~kvFdR~~~L~~~QI 153 (494)
T 1bpo_A 90 IFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-------------QPVKMFDRHSSLAGCQI 153 (494)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSC-------------CCEEEEECCGGGTTCEE
T ss_pred EEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCC-------------CchhheecchhcccceE
Confidence 9999998533222234567777785443 444443 4589999997522 022333333 2334
Q ss_pred cEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC--CcEE
Q 039790 318 PRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTRL 392 (1395)
Q Consensus 318 ~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~L 392 (1395)
.....+++..+++.+|- ++.+. |....|+.+... .+.+.||.+....+.+.-+. ..+|
T Consensus 154 InY~~d~~~kW~~l~GI~~~~~~v~-------G~mQLYS~er~~----------sQ~ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 154 INYRTDAKQKWLLLTGISAQQNRVV-------GAMQLYSVDRKV----------SQPIEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp EEEEECTTSSEEEEEEEEEETTEEE-------EEEEEEESTTCC----------EEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred EEEEECCCCCeEEEEeecccCCccc-------ceEEEeeccccc----------cchheeeeeeeEEEecCCCCCCceEE
Confidence 44556777888887775 22111 111222222211 46677776655444432111 1345
Q ss_pred EEEeCC---CcEEEEeCCCC---c------eeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 393 ASASLD---GTVKIWDDRKS---T------PLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 393 aSgs~D---g~IrIWDl~sg---~------~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+.+... +.+.|-++... . .+..+-.. .++-..++..+ +....+.... .-|.|++||+.++
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs----~kygviyviT-K~G~i~lyDleTg- 290 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVVFLIT-KYGYIHLYDLETG- 290 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE----TTTTEEEEEE-TTSEEEEEETTTC-
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec----ccCCEEEEEe-cCceEEEEecccc-
Confidence 555543 78888888532 1 11111111 12255677777 4444444334 7899999999999
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|+..-+.....+.. .+......=+++-..+|.|.-..++.
T Consensus 291 -----------t~i~~nrIs~~~iF~---------t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 291 -----------TCIYMNRISGETIFV---------TAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp -----------CEEEEEECCSSCEEE---------EEEETTTTEEEEEETTCEEEEEEECT
T ss_pred -----------eeeeeecccCCceEE---------ecccCCCCcEEEEccCceEEEEEEcc
Confidence 888776655443321 22233333333344777776666654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.68 E-value=4.4 Score=45.29 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 227 NRNYICYGLKL-----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~D-----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
++++++.|+.+ ..+.+||..+..-..+.. .......+.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777887754 358889988874333321 1111222223 677888887664 47788887754
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=89.98 E-value=51 Score=41.93 Aligned_cols=245 Identities=9% Similarity=0.004 Sum_probs=121.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC------CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH------TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H------~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..|.++....+|.+.+ |+.+ -|..||..++....+... ...|.++.. ..++..|..|.. +-|..+|..++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLE-DTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEE-ETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEE-ECCCCEEEEEEC-CCCeEEcCCCC
Confidence 4678877777777554 5554 477888877654333211 234888877 555665444553 45888888765
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. ..+... ....+.+++...++. +.++. ++++.+++.... ....+..... . .
T Consensus 222 ~~------------~~~~~l--~~~~i~~i~~d~~g~-lWigT-~~Gl~~~~~~~~-~~~~~~~~~~---------~-~- 273 (758)
T 3ott_A 222 QI------------KQTEAF--HNNSIKSLALDGNGD-LLAGT-DNGLYVYHNDTT-PLQHIIHDSR---------N-I- 273 (758)
T ss_dssp EE------------EEEEEE--EEEEEEEEEECTTCC-EEEEE-TTEEEEECCTTS-CCEEECCCTT---------C-T-
T ss_pred eE------------EeccCC--CCCeEEEEEEcCCCC-EEEEe-CCceeEEecCCC-cEEEEEcCCC---------C-c-
Confidence 41 111111 122355666666554 44444 567877765321 1100100000 0 0
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec------CCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR------PYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..-....|.++....+| .|-.|+..| +.++.... ....+. .-.+..|.++... .+|.+.+. .
T Consensus 274 -~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D----~~g~lWiG-t- 341 (758)
T 3ott_A 274 -QSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRD----SKGFYWFG-G- 341 (758)
T ss_dssp -TSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEEC----TTCCEEEE-E-
T ss_pred -CcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEc----CCCCEEEe-e-
Confidence 00123468899888776 344455566 55554322 122211 1112268888886 67765553 3
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+| +..++..++.. .....+...... .... .-.+.++.-..+|.+.++. ++-|+.|+..++
T Consensus 342 ~~G-l~~~~~~~~~~----------~~~~~~~~~~~~-~~l~-~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~ 402 (758)
T 3ott_A 342 ANG-LIRFTDPAGER----------HDAIWYRMGDKT-YPLS-HNRIRHIYEDKEQQLWIAT--DGSINRYDYATR 402 (758)
T ss_dssp TTE-EEEESCTTSSC----------CCCEEECTTCSS-SCCS-CSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred CCc-ceeeccccccc----------ceeEEeccCCcC-CCCC-CCceEEEEECCCCCEEEEe--CCcHhhcCcCCC
Confidence 444 66666554300 111122211000 0000 1112345666778766644 457888987654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.98 E-value=5.6 Score=45.59 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=35.7
Q ss_pred CCCEEEEEEc-CCeEEEEECCC--CceEEeccC---CCCeEEEEEeeCCCCEEEEEEC-C---------CcEEEEECCCC
Q 039790 227 NRNYICYGLK-LGNIRILNIIT--ALRSLLRGH---TQRVTDMAFFAEDVHLLASASV-D---------GRFFIWNITEG 290 (1395)
Q Consensus 227 dg~~LasGs~-DG~IrIWd~~~--~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~-D---------gtV~IWdl~tg 290 (1395)
++++++.|+. ...+.+||..+ ..-..+..- ...-.+++. -++.+++.||. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6677777764 35688899874 332222211 111122222 26777777776 2 46889998876
Q ss_pred C
Q 039790 291 P 291 (1395)
Q Consensus 291 ~ 291 (1395)
.
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=89.83 E-value=16 Score=43.13 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=72.9
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------eeEEecC------CCCCCeeEEEEeecCCCCCcEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKST------------PLAVLRP------YDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~------------~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.|..+..+|+| ++||..+ +..|.|-.+..+. ..+.+.- ... +|..+.|.|.. ..|..|
T Consensus 67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s-~I~qVlWHPl~-~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKS-SIKKVLFHPKS-YRDSCI 142 (452)
T ss_dssp TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCC-CEEEEEECTTB-GGGCEE
T ss_pred ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCC-ceeEEEecccc-CCCCeE
Confidence 57889999998 7888775 5578888776321 1223332 123 79999997322 134466
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc-cccccceEEEEeCCCCEEEEEe--CCCeEEEEE
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL-EDAFFNQVVALNRAGLFLLANA--KKNAIYAIH 516 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~-~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWd 516 (1395)
++-- .|++||+||+.... + +.. .|+..... .+. ....-...++|..+|..|.... .+|.||...
T Consensus 143 VVLt-sD~~Ir~yDl~~s~--------~--~P~-~L~k~~~~-fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 143 VVLK-EDDTITMFDILNSQ--------E--KPI-VLNKPNNS-FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEE-TTSCEEEEETTCTT--------S--CCE-EESCCCSE-EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEe-cCCEEEEEEcccCC--------C--CCc-chhccccc-cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 6666 89999999998641 0 111 23211110 000 0001223689999888776644 778887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.83 E-value=16 Score=40.98 Aligned_cols=66 Identities=2% Similarity=-0.116 Sum_probs=37.7
Q ss_pred EecCCCEEEEEEc----C-------CeEEEEECCCCceEEeccCCCCe--EEEEEeeCCCCEEEEEECC--------CcE
Q 039790 224 IAVNRNYICYGLK----L-------GNIRILNIITALRSLLRGHTQRV--TDMAFFAEDVHLLASASVD--------GRF 282 (1395)
Q Consensus 224 ~Spdg~~LasGs~----D-------G~IrIWd~~~~~~~~l~~H~~~V--~slaf~s~dg~~LaSgs~D--------gtV 282 (1395)
...++++++.|+. + ..+.+||..++.-..+..-...- .+++. -++.+++.||.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceE
Confidence 3457788888874 1 12778888877433332211111 12222 266777777743 358
Q ss_pred EEEECCCCC
Q 039790 283 FIWNITEGP 291 (1395)
Q Consensus 283 ~IWdl~tg~ 291 (1395)
.+||+.+++
T Consensus 120 ~~~d~~~~~ 128 (315)
T 4asc_A 120 MCYDRLSFK 128 (315)
T ss_dssp EEEETTTTE
T ss_pred EEECCCCCc
Confidence 889988764
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.82 E-value=49 Score=43.56 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=33.8
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.+.+++.. ++..++++.+ .|+++|||++.++ +|+.+.....
T Consensus 237 ~~~~~~~~----~~~~~lftl~-~D~~LRiWsl~t~------------~~v~t~dL~~ 277 (950)
T 4gq2_M 237 TIISMIFL----STYNVLVMLS-LDYKLKVLDLSTN------------QCVETIELSQ 277 (950)
T ss_dssp CEEEEEEE----TTTTEEEEEE-TTCEEEEEETTTT------------EEEEEEECCC
T ss_pred eEEEEeec----CCCcEEEEEE-CCCEEEEEECCCC------------CeEeeecccc
Confidence 45666776 7888999988 9999999999998 9998877543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=7.6 Score=49.44 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=39.5
Q ss_pred cCCCEEEEEEcC----CeEEEEECCCCceEEec-c------CCCC-eEEEEEeeC-CCCEEEEEECCC------cEEEEE
Q 039790 226 VNRNYICYGLKL----GNIRILNIITALRSLLR-G------HTQR-VTDMAFFAE-DVHLLASASVDG------RFFIWN 286 (1395)
Q Consensus 226 pdg~~LasGs~D----G~IrIWd~~~~~~~~l~-~------H~~~-V~slaf~s~-dg~~LaSgs~Dg------tV~IWd 286 (1395)
.++.+++.|+.+ ..+.+||..++.-..+. . ...+ -.+++. -. ++.+++.||.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~-~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT-ISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE-ETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE-EccCCEEEEEcCCCCCCCccccEEEEe
Confidence 577788888754 46888998887533333 1 1111 123333 22 777888887543 478888
Q ss_pred CCCCC
Q 039790 287 ITEGP 291 (1395)
Q Consensus 287 l~tg~ 291 (1395)
+.+..
T Consensus 475 ~~t~~ 479 (695)
T 2zwa_A 475 MKTRE 479 (695)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 88754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.68 E-value=19 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCEEEEEEc-C---------CeEEEEECCCCceEEeccCC--CCeEEEEEeeCCCCEEEEEECC
Q 039790 227 NRNYICYGLK-L---------GNIRILNIITALRSLLRGHT--QRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 227 dg~~LasGs~-D---------G~IrIWd~~~~~~~~l~~H~--~~V~slaf~s~dg~~LaSgs~D 279 (1395)
++++++.|+. + ..+.+||..+..-..+.... .+....++ ..++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence 6777777765 2 46889999887533332211 11111112 2377888888865
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=15 Score=39.62 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=98.5
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~ 348 (1395)
..+|.....| +|+.=....+.. ..+.......+. .=..+..++|+|++ .|+++ .++.+.+++......
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~--------~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV-~~G~Ly~~~~~t~~~ 72 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKN--------DNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV-LNDKIYKGTPPTHDN 72 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTT--------CCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE-ETTEEEEESCCCSTT
T ss_pred ceEEEEEeCC-cEEecCCCCCcc--------cchhhhccccCccccccceeEEECCCc-cEEEE-eCCeEEEECCCCCCc
Confidence 3456777777 666554444331 111111222222 12356799999966 47777 888888877543221
Q ss_pred cccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee------EEecCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL------AVLRPYDG 420 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l------~tl~~h~~ 420 (1395)
. .|--. -..+. +... -.++.|.++| .+.++ .||.|.-|+-.+...- ..+-.+.-
T Consensus 73 ~------------~W~~s--~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw 134 (236)
T 1tl2_A 73 D------------NWMGR--AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGW 134 (236)
T ss_dssp C------------CHHHH--CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSG
T ss_pred c------------ccccc--ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCC
Confidence 1 11110 11121 1122 4688999998 56655 6699988875332110 11111111
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
..+..|.|. |+|.+.++. |+.++-+..-++ ....|-...+.-++.+. ..+ ..+.|.++|
T Consensus 135 ~~~~~lff~----p~G~Lyav~---dg~lyr~~~P~~-------~~~~wl~~~~~~g~~g~------~~y-r~l~f~~~G 193 (236)
T 1tl2_A 135 SGFKFLFFH----PNGYLYAVH---GQQFYKALPPVS-------NQDNWLARATKIGQGGW------DTF-KFLFFSSVG 193 (236)
T ss_dssp GGEEEEEEC----TTSCEEEEE---TTEEEEECCCSS-------TTCCHHHHCEEEESSSG------GGE-EEEEECTTS
T ss_pred CceEEEEEC----CCceEEEEe---CCcEEecCCCCC-------CCcccccccceeccCCc------ceE-EEEEECCCC
Confidence 258899998 999877663 666543332221 00122111222221211 111 246699999
Q ss_pred CEEEEEeCCCeEE
Q 039790 501 LFLLANAKKNAIY 513 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~ 513 (1395)
.+.+.. ++.+|
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 888777 77554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=85.27 E-value=12 Score=41.79 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=36.9
Q ss_pred CCCEEEEEEc----C-----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCC
Q 039790 227 NRNYICYGLK----L-----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITE 289 (1395)
Q Consensus 227 dg~~LasGs~----D-----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~t 289 (1395)
++++++.|+. + ..+.+||..+..-..+.. .......+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6777777765 2 468889988874333321 1111222233 67777777654 3588899887
Q ss_pred CC
Q 039790 290 GP 291 (1395)
Q Consensus 290 g~ 291 (1395)
..
T Consensus 147 ~~ 148 (308)
T 1zgk_A 147 DE 148 (308)
T ss_dssp TE
T ss_pred Ce
Confidence 65
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=85.06 E-value=72 Score=38.18 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=109.4
Q ss_pred CCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc----eEEec-----c----CCCCeEEEEEeeCC----CCEEEEEEC
Q 039790 217 GLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL----RSLLR-----G----HTQRVTDMAFFAED----VHLLASASV 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~----~~~l~-----~----H~~~V~slaf~s~d----g~~LaSgs~ 278 (1395)
..-+.++|.|||. .|+++...|.|++++..... +..+. + ..+....|+| .++ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~-~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAF-HPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEE-CTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEe-CCCCcCCCEEEEEEeC
Confidence 4567899999996 45556788999999764321 12111 1 1356789999 554 444444332
Q ss_pred C------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-----------
Q 039790 279 D------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----------- 335 (1395)
Q Consensus 279 D------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----------- 335 (1395)
+ ..|.-|.+..+.... ........+..+.. .........|.|.|++..++++|..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~-~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q 170 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAE-LHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMD 170 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEE-SSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCC-CCCcccCCcEeECCCCcEEEEeCCCCCCCCcccccc
Confidence 1 134446665431000 00011223333221 2223345689999999766666653
Q ss_pred ------CeEEEEEcCCCCccccccC--CCCCccCccccccceEEEcccCCCeEEEEEecCCC----c-EEEEEeCCC---
Q 039790 336 ------NRILKIDSNRVGKGERFSA--EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT----T-RLASASLDG--- 399 (1395)
Q Consensus 336 ------~~ii~~d~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~----~-~LaSgs~Dg--- 399 (1395)
++|++++.........|+. +.++.-. .-......-.||.. ...++|.+..+ . ++..+...|
T Consensus 171 ~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~--~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~ 247 (463)
T 2wg3_C 171 GLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNS--TNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNR 247 (463)
T ss_dssp TCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTC--SSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC-----
T ss_pred CcCCCCeeEEEEECCCCcccccCcCCCCCCCcCC--CCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCC
Confidence 3477776643211111111 1111100 00011222334654 45789999731 3 444433212
Q ss_pred -cEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCC---CCCcEEEEEecCCCeEEEEECC
Q 039790 400 -TVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPH---PQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 400 -~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~---pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.-.|..+..| .++..+..|.+..+..+.|-.... -.|.+|+. . ..+.|....+.
T Consensus 248 ~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~-~~g~i~~~~~~ 311 (463)
T 2wg3_C 248 SSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-D-RNGNFLTLQQS 311 (463)
T ss_dssp -CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-E-TTSCEEEEEC-
T ss_pred CCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-c-CCCcEEEEEeC
Confidence 2344444333 366677655333788888852211 13445553 3 44655444443
|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
Probab=85.05 E-value=8.4 Score=45.51 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhchh
Q 039790 1138 LQDALRSNLETSIIP 1152 (1395)
Q Consensus 1138 i~~~~~~~~~~~liP 1152 (1395)
+|..|.+.....|.|
T Consensus 181 ~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 181 QQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhhcccCC
Confidence 344444444444444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=6.4 Score=42.39 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=64.2
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCC--------eEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQR--------VTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~--------V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+.+++|+|+|.+.++ .+|.++-.+..++.-..+.+-... -.++.| .++|.+.++ .||.|+-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFF-DPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEE-CTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEE-CCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999996666 678777666655321212111222 356777 889988777 569998887543
Q ss_pred CCCCCCCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEE
Q 039790 290 GPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILK 340 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~ 340 (1395)
... ..++..-..++. .=..+..|.+.|++. |+++. ++.+.+
T Consensus 117 ~~~--------~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~lyr 158 (236)
T 1tl2_A 117 SDT--------DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQFYK 158 (236)
T ss_dssp STT--------CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEEEE
T ss_pred CCC--------CceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcEEe
Confidence 221 111111111222 223456788999885 66666 777655
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.44 E-value=30 Score=38.66 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=37.5
Q ss_pred EecCCCEEEEEEc----CC-------eEEEEECCCCceEEeccCC--CCeEEEEEeeCCCCEEEEEECC-------CcEE
Q 039790 224 IAVNRNYICYGLK----LG-------NIRILNIITALRSLLRGHT--QRVTDMAFFAEDVHLLASASVD-------GRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~----DG-------~IrIWd~~~~~~~~l~~H~--~~V~slaf~s~dg~~LaSgs~D-------gtV~ 283 (1395)
...++.+++.|+. ++ .+.+||..++.-..+..-. ..-.+++. .++.+++.||.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEE
Confidence 4457788888873 12 1778888876533332111 11122232 267777777764 2478
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
+||+.+.+
T Consensus 131 ~yd~~~~~ 138 (318)
T 2woz_A 131 CYDPVAAK 138 (318)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCC
Confidence 88888764
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.12 E-value=48 Score=43.62 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCcc---ccccCCCCCccCccccccceEEEcc---cCCCeEEEEEecCCCcEEEEEe
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKG---ERFSAEEPLKCPVDELINGVQLVGK---HDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~l~~---h~~~V~slafspdg~~~LaSgs 396 (1395)
.-+...++++..+|+++++........ ..|.. ..+...+..... .+.... -...+.+++..++. .++++-+
T Consensus 178 av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~-~s~~~sl~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~lftl~ 254 (950)
T 4gq2_M 178 AISTSEICVSFFNGGLTKIILNPKDASHYEQHIDD-SSYLFSLKKYLS-LQAFKADYRSPNTIISMIFLSTY-NVLVMLS 254 (950)
T ss_dssp ECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECC-CCCCCBCC--------CCSSCCCTTCEEEEEEETTT-TEEEEEE
T ss_pred EEcCCeEEEEECCCCEEEEEecCCCCCcceeeecC-CcHHHhhhhhcc-cccCCCCCCCcceEEEEeecCCC-cEEEEEE
Confidence 334557888888999998854332110 01111 111000101010 000111 12356788887776 7999999
Q ss_pred CCCcEEEEeCCCCceeEEec
Q 039790 397 LDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
.|+++|||++.+++++.+..
T Consensus 255 ~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 255 LDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCCeEeeec
Confidence 99999999999999998865
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=81.98 E-value=26 Score=47.48 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
.+|..+.||.-. ..++.|||+++.. +..+. ....|.-=.|.+++ .|+-.+ +..|+-|++.... .
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s-~--------- 137 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-Q--------- 137 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC--eeEEEc-CCeEEEeccCCCC-c---------
Confidence 467777777654 6899999999874 32222 23456666774443 333333 3579999996422 0
Q ss_pred eEEEEEEecCC----CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 303 IVVAIQILADG----DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 303 ~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
..+++..| ...|.....+++..+++.+|-...-- .-.|....|+.+... .+.+.||.+.
T Consensus 138 ---P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~----~v~G~mQLyS~er~~----------sQ~iegha~~ 200 (1630)
T 1xi4_A 138 ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN----RVVGAMQLYSVDRKV----------SQPIEGHAAS 200 (1630)
T ss_pred ---cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC----cccceeeeeeccccc----------chhhhHhHhh
Confidence 11112221 23344455677777777777521100 011222222222211 2344555544
Q ss_pred eEEEEEe--cCCCcEEEEEeC---CCcEEEEeCCCC---cee------EEecCC--CCCCeeEEEEeecCCCCCcEEEEE
Q 039790 379 ITELSMC--QWLTTRLASASL---DGTVKIWDDRKS---TPL------AVLRPY--DGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 379 V~slafs--pdg~~~LaSgs~---Dg~IrIWDl~sg---~~l------~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...+.+. +....+|+.+.. .+.+.|-++... .+. ..+... .+.-..++..+ +....+...
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs----~k~g~iy~i 276 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVVFLI 276 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec----cccCEEEEE
Confidence 3333332 111123333322 267888887442 111 111111 11134455555 333333333
Q ss_pred ecCCCeEEEEECCCC
Q 039790 443 GPLNRELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg 457 (1395)
. .-|.|.+||+.++
T Consensus 277 t-k~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 277 T-KYGYIHLYDLETG 290 (1630)
T ss_pred e-cCceEEEEecccc
Confidence 3 7899999999998
|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
Probab=81.00 E-value=4.1 Score=48.06 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=0.0
Q ss_pred HHHHhc
Q 039790 1288 SWLCSQ 1293 (1395)
Q Consensus 1288 ~~l~~~ 1293 (1395)
++-|++
T Consensus 439 r~sCsk 444 (562)
T 3ghg_A 439 RRSCSK 444 (562)
T ss_dssp ------
T ss_pred eccccc
Confidence 444554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1395 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.2 bits (152), Expect = 6e-11
Identities = 54/318 (16%), Positives = 91/318 (28%), Gaps = 37/318 (11%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
L GH VT + F ++ SAS D +W+ G D E + V I
Sbjct: 13 LSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHS 70
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
G + K R + + V + + + + V
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 373 GKHDGEITELSMCQWLT--------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN 424
T +W+ T +AS S D TV++W A LR + H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVE 189
Query: 425 CVTFLIGPHPQHIVLITGGPL---NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481
C+++ I TG + S + + D+ + C TL +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 482 ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTV-TMPI 540
+ V + G F+L+ A + + +
Sbjct: 250 ---------VRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKTLNAHEHFV 292
Query: 541 LSLTGTTTDASPDGEHIV 558
SL D ++V
Sbjct: 293 TSL-----DFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.8 bits (151), Expect = 8e-11
Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 22/200 (11%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
GH + M +D L+AS S D +W + L +
Sbjct: 139 FTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------------CKAELRE 183
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
V + W P + K S ++ +K + +
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432
HD + + + S + D T+++WD + + L ++ V + F
Sbjct: 244 VGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDF---- 297
Query: 433 HPQHIVLITGGPLNRELKIW 452
H ++TG +++ +K+W
Sbjct: 298 HKTAPYVVTGS-VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 9e-04
Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 59/201 (29%)
Query: 227 NRNYICYGLKLGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVH-------------- 271
+ I +R+ + T ++ LR H V +++ E +
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 272 -----LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK 326
L S S D +W+++ G + + L D+ V +H
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTG--------------MCLMTLVGHDNWVRGVLFHSGG 259
Query: 327 QEILMLAIGN--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384
+ IL A R+ + R ++ + H+ +T L
Sbjct: 260 KFILSCADDKTLRVWDYKNKRC----------------------MKTLNAHEHFVTSLDF 297
Query: 385 CQWLTTRLASASLDGTVKIWD 405
+ + + S+D TVK+W+
Sbjct: 298 HKT-APYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 5e-09
Identities = 36/206 (17%), Positives = 58/206 (28%), Gaps = 18/206 (8%)
Query: 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308
R LRGH ++ M + D LL SAS DG+ IW+ P V+
Sbjct: 47 TRRTLRGHLAKIYAMH-WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCA 104
Query: 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368
G+ V + L GN + + V +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 369 VQLVGKHDGEITELS-----------MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP 417
+ + + T S + D + K+WD R+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 418 YDGHPVNCVTFLIGPHPQHIVLITGG 443
++ +N + F P TG
Sbjct: 225 HES-DINAICF----FPNGNAFATGS 245
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 1e-07
Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 39/182 (21%)
Query: 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330
L S + D +W++ EG + Q +S +C+ P+
Sbjct: 197 RLFVSGACDASAKLWDVREG--------------MCRQTFTGHESDINAICFFPNGNAFA 242
Query: 331 MLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390
+ ++ R + + + + C + + G +
Sbjct: 243 T-GSDDATCRLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRL----------- 284
Query: 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450
L + D +WD K+ VL +D V+C+ + + TG + LK
Sbjct: 285 -LLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGV----TDDGMAVATGS-WDSFLK 337
Query: 451 IW 452
IW
Sbjct: 338 IW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.4 bits (124), Expect = 2e-07
Identities = 25/188 (13%), Positives = 57/188 (30%), Gaps = 35/188 (18%)
Query: 219 VLGRQIAVNRNYICYGLKLGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASAS 277
V+ +A + G + ++ ++ R GH + + FF + + A+ S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGS 245
Query: 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR 337
D ++++ + + V + + +L
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGIT------------SVSFSKSGRLLLAGYDDFN 293
Query: 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL 397
D K +R ++ HD ++ L + +A+ S
Sbjct: 294 CNVWD---ALKADR-----------------AGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 398 DGTVKIWD 405
D +KIW+
Sbjct: 333 DSFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 7e-09
Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 24/230 (10%)
Query: 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
+ + + G +RI ++ T SL VT +A D +A+ S+D +W+
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV 346
G ++ ++ + V + Q ++ ++ + +
Sbjct: 234 SETG-------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN---- 282
Query: 347 GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406
+A H + ++ Q + S S D V WD
Sbjct: 283 ----LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDK 337
Query: 407 RKSTPLAVLRPYDGH--PVNCVTFLIGP--HPQHIVLITGGPLNRELKIW 452
+ PL +L+ GH V V G P++ V TG + + +IW
Sbjct: 338 KSGNPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 8e-07
Identities = 45/329 (13%), Positives = 81/329 (24%), Gaps = 47/329 (14%)
Query: 93 FQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPPSP 152
+ + P+ + SPS + S S G +A A +
Sbjct: 93 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDI 150
Query: 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY 212
K G+ +V D+R +T
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--------ALRSLLRGHTQRVTDMA 264
PG + YI G +R+ + T + GH V +
Sbjct: 211 AVSPG---------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261
Query: 265 FFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324
F D + S S+D +WN+ V
Sbjct: 262 F-TRDGQSVVSGSLDRSVKLWNLQNA--NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 325 HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384
+ + IL + +L D G + ++ H + +++
Sbjct: 319 NDEYILSGSKDRGVLFWD---KKSGNP-----------------LLMLQGHRNSVISVAV 358
Query: 385 CQWLT-----TRLASASLDGTVKIWDDRK 408
+ A+ S D +IW +K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 4e-08
Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 51/223 (22%)
Query: 238 GNIRILNI-ITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296
+++ + L+GHT RV + F D + S S+D +W++
Sbjct: 157 FMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------- 206
Query: 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356
+ K IL+ + +KI
Sbjct: 207 ----------GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI--------------- 241
Query: 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416
+ + +Q KH +T Q+ + ++S DGTVK+WD + + L
Sbjct: 242 -WDIKTGQCLQTLQGPNKHQSAVT---CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Query: 417 --PYDGH--PVNCVTFLIGPHPQHIVLITG---GPLNRELKIW 452
G V + +V G G +L +
Sbjct: 298 TLESGGSGGVVWRIRA----SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTF 428
HD + ++ Q+ R+ S S D T+K+W L L + G V
Sbjct: 15 HDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQM 65
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 2e-05
Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 11/230 (4%)
Query: 224 IAVNRNYICYGLKLGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282
+ N I G +++ + +T L GHT V +++ + S +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RDNIIISGSTDRTLKV 81
Query: 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKID 342
+ E + + + S + + + + + +
Sbjct: 82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141
Query: 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402
+ S V + + G + Q+ + S SLD +++
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 403 IWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452
+WD + L + + + +V G + +KIW
Sbjct: 201 VWDVETGNCIHTLTGHQS-LTSGMEL----KDNILV---SGNADSTVKIW 242
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 2e-07
Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 19/215 (8%)
Query: 251 SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310
+ + H + ++ S S DG +W+ +E K + V +
Sbjct: 8 NAGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370
V + + ++ + L + E L ++
Sbjct: 65 H--VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM----- 117
Query: 371 LVGKHDGEITELSMC----QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426
L + L+ RL + + GT IW + + P +
Sbjct: 118 ----KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461
+ T ++ I A+ G +
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLI-ATGFNNGTV 207
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 9e-05
Identities = 21/196 (10%), Positives = 56/196 (28%), Gaps = 16/196 (8%)
Query: 222 RQIAVNRNYICYGLKLGNIRILNIIT-------------ALRSLLRGHTQRVTDMAFFAE 268
++ ++ G +++ + + H + + A
Sbjct: 18 FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF 77
Query: 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328
++ L+A+ S G + IT + + ++ + ++
Sbjct: 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 137
Query: 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388
L+ I + ++ P EL V+ T + + +
Sbjct: 138 RLVATDVKGTTYIWKFHPF-ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-- 194
Query: 389 TTRLASASLDGTVKIW 404
+A+ +GTV+I
Sbjct: 195 RGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 20/193 (10%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
+Q T + L+A+ +G I ++ + I + I +
Sbjct: 180 PMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
S + H + S++ L
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF----------- 286
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLI 430
H + LS L SA DG ++ WD + + L + H + ++
Sbjct: 287 -AHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTL---NMHCDDIEIEEDIL 341
Query: 431 GPHPQHIVLITGG 443
L G
Sbjct: 342 AVDEHGDSLAEPG 354
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 10/166 (6%)
Query: 325 HKQEILMLAIGNRILKIDSN----RVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380
H +I ++ N S +V + E P ++ L H +
Sbjct: 13 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL--HHVDVLQ 70
Query: 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440
+ + +A+ S G + + + + ++ + + H +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKW 127
Query: 441 TGGPLNRELKIWASAEEEGWLLPSDIESW-KCTQTLELKSSAELRL 485
+ + +G + + +L L S L L
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 3e-07
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCV 426
VQ+ I+++ + + L S DG++ ++ L + P+ C
Sbjct: 4 VQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 427 TFLIGPHPQHIVLITGGPLNRELKIW 452
F + I G + E+
Sbjct: 63 NF----IDNTDLQIYVGTVQGEILKV 84
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 3e-04
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 12/82 (14%)
Query: 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311
+ + ++D+ LL S DG ++ K V +Q L
Sbjct: 6 IEQAPKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQ----------AKNVDLLQSLR 54
Query: 312 DGDSVHPRVCWHPHKQEILMLA 333
+ + + + +
Sbjct: 55 YKHPLL-CCNFIDNTDLQIYVG 75
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 19/171 (11%), Positives = 42/171 (24%), Gaps = 29/171 (16%)
Query: 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376
++ +I R+ + G S +C L +
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT-----NLA 251
Query: 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH 436
+ + L +A DG + W+ + + + + V
Sbjct: 252 YPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKI--ACSDNI 306
Query: 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487
+ A + + QT+EL +S+ + D
Sbjct: 307 L---------------CLATSDDT----FKTNAAIDQTIELNASSIYIIFD 338
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 34/169 (20%)
Query: 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296
I++ N T L GH + + + + L+ S S D +W+I
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------- 207
Query: 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356
L + V + ++ + +K+ + A
Sbjct: 208 ----------GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD--LVAALDPRAPA 255
Query: 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD 405
C ++ + +H G + L + ++ S+S D T+ IWD
Sbjct: 256 GTLC--------LRTLVEHSGRVFRLQ---FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 5e-07
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 54/192 (28%)
Query: 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328
D + SAS D +WN + + + + + ++
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTC-----------------EFVRTLNGHKRGIACLQYRDR 189
Query: 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388
+++ + +++ I + +G + ++
Sbjct: 190 LVVSGSSDNTIRLWD----------------------IECGACLRVLEGHEELVRCIRFD 227
Query: 389 TTRLASASLDGTVKIWD------DRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLI 440
R+ S + DG +K+WD R LR H V + F IV
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF----DEFQIV-- 281
Query: 441 TGGPLNRELKIW 452
+ + + IW
Sbjct: 282 SSS-HDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 21/259 (8%)
Query: 224 IAVNRNYICYGLKLGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282
+ + I GL+ I+I + T + +L GHT V + + + +S S +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKID 342
+ + + + ++ W + R + +
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT----LRRVLVG 136
Query: 343 SNRVGKGERFSAEEPLKCPVDELI-----NGVQLVGKHDGEITELSMCQWLTTRLASASL 397
F + + D I + + V +G ++ Q+ + S S
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 196
Query: 398 DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457
D T+++WD L + L+ I G + ++K+W +
Sbjct: 197 DNTIRLWDIECGACL--------RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW---DL 245
Query: 458 EGWLLPSDIESWKCTQTLE 476
L P C +TL
Sbjct: 246 VAALDPRAPAGTLCLRTLV 264
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 27/224 (12%)
Query: 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD----EEDKPQILGKIVVAIQIL 310
++ V + + D + S D IW+ +L I+
Sbjct: 13 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370
RV + + L + G S + + +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLI 430
L G +++ + + SAS D T+K+W+ + L + + C+ +
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQY-- 186
Query: 431 GPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474
+ +V G + +++W DIE C +
Sbjct: 187 --RDRLVV---SGSSDNTIRLW------------DIECGACLRV 213
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 6e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCV 426
+Q + + Q+ ++ S D T+KIWD +L GH V C+
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCL 61
Query: 427 TF 428
+
Sbjct: 62 QY 63
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.0 bits (117), Expect = 9e-07
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434
H+ IT LS L SA +G + WD V + +
Sbjct: 11 HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 435 QH 436
Sbjct: 70 FT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 7e-06
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290
++ + GH + +T ++ + D L SA +G W+I+ G
Sbjct: 3 SIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTG 44
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.2 bits (102), Expect = 7e-05
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLIT 441
RLA+ SLD +V +W+ K + ++ VN V +L +++
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-----IVS 285
Query: 442 GGPLNRELKIW 452
G + +K W
Sbjct: 286 AG-QDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (88), Expect = 0.004
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288
++ + N+ + H + + + + SA D WN+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQDSNIKFWNVP 298
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 41/344 (11%), Positives = 89/344 (25%), Gaps = 37/344 (10%)
Query: 227 NRNYICYGLKLGNIRILNIIT---ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283
+R I + I L+ H +VT + + A D + + + D +
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVTCGTDRNAY 76
Query: 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343
+W + + ++ A+G+ I
Sbjct: 77 VWTLKGRTWKPTLVI---------------LRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 344 NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403
+ + + +K P+ + + + LA+ S D +I
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSL--------------DWHPNSVLLAAGSCDFKCRI 167
Query: 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463
+ P L+ + G + A + +
Sbjct: 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227
Query: 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVAL---NRAGLFLLANAKKNAIYAIHMDYG 520
+D + TL ++ L + + +VA LF +A + +D
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 287
Query: 521 PNPASTRMDYIAEFTVTMPILSLTGTTT-DASPDGEHIVQIYCV 563
+ + F S G+ A D H + +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 10/162 (6%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI----- 307
V + F + +A S D + + + ++
Sbjct: 197 SSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 255
Query: 308 QILADGDSVHPRV-CWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366
++A G P + + ++ + + + ERF +
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 315
Query: 367 NGVQLVGKHDGEITELSMCQW---LTTRLASASLDGTVKIWD 405
G L H ++++S+ ++ + +DG + IWD
Sbjct: 316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAED---VHLLASASVDGRFFIWNI 287
A L H V+ ++ + + +DG IW++
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443
T++ASAS D T+KIW+ + + + Q +V +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII--WTKQALV--SIS 300
Query: 444 PLNRELKIW 452
N +
Sbjct: 301 -ANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 0.003
Identities = 32/296 (10%), Positives = 79/296 (26%), Gaps = 37/296 (12%)
Query: 238 GNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE-- 294
++ + + + + H+ + T + + AS V G IW+ T+
Sbjct: 38 TSVYTVPVGSLTDTEIYTEHSHQTTVAK-TSPSGYYCASGDVHGNVRIWDTTQTTHILKT 96
Query: 295 ----------DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN 344
D +A H + L
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 345 RVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404
+++ + + + + AS DGT+ ++
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 405 DDRKSTPLAVLRPYDGHPVNCVTFLIGPH--PQHIVLITGGPLNRELKIWASAEEEGWLL 462
+ T V V + G P + + ++ +KIW
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIW---------- 265
Query: 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518
++ + K +T+ + + E +Q + + L++ + I ++ +
Sbjct: 266 --NVATLKVEKTIPVGTRIE--------DQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443
+ + + A+ D T+++WD S + D + + +I+
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNG-RIISLS 315
Query: 444 PLNRELKIW 452
L+ L +
Sbjct: 316 -LDGTLNFY 323
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 1e-05
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELK 450
A+ SLD + I+ + P+ +++ + H VN + + L++ G + +K
Sbjct: 231 ATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLW----ETPST-LVSSG-ADACIK 282
Query: 451 IW 452
W
Sbjct: 283 RW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 5e-05
Identities = 17/184 (9%), Positives = 46/184 (25%), Gaps = 14/184 (7%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
+ GH + +T + + L S S DGR W+ + + +V++
Sbjct: 9 ISGHNKGITALTV-----NPLISGSYDGRIMEWSSSSMHQDHSNL------IVSLDNSKA 57
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
+ I G++ +N G + + ++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG---FTAVLTNDDDLLILQSFTGDII 114
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432
++ T++++ L+ + ++
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 433 HPQH 436
Sbjct: 175 TYIA 178
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 227 NRNYICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284
+ + G NI I ++ ++ + L H V ++ + L S+ D
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKR 283
Query: 285 WNI 287
WN+
Sbjct: 284 WNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 18/68 (26%)
Query: 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH- 421
DE++ + G H+ IT L++ L S S DG + W + H
Sbjct: 3 DEVLK--TISG-HNKGITALTV-----NPLISGSYDGRIMEWS--------SSSMHQDHS 46
Query: 422 -PVNCVTF 428
+ +
Sbjct: 47 NLIVSLDN 54
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449
S D + W + + + V ++TG +++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDI----SVDDKYIVTGS-GDKKA 330
Query: 450 KIW 452
++
Sbjct: 331 TVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 8e-05
Identities = 5/61 (8%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
+ K + + V + D + + S D + ++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD-ISVDDKYIVTGSGDKKATVYE 334
Query: 287 I 287
+
Sbjct: 335 V 335
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 2e-05
Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGP 432
H + ++ Q+ + + + D ++++D L L GH V + +
Sbjct: 11 HMTSV--ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKY---- 61
Query: 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473
I++ + +
Sbjct: 62 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 5e-05
Identities = 22/232 (9%), Positives = 56/232 (24%), Gaps = 45/232 (19%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309
R+ LRGH V F + + + + + D +++
Sbjct: 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK------------------- 43
Query: 310 LADGDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367
+ H + L G ++ ++R +
Sbjct: 44 -------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG---- 92
Query: 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-----RPYDGHP 422
+ + + + S D T+ +W K + + P H
Sbjct: 93 ------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 146
Query: 423 VNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474
+ +G H+ + + + + S + + +
Sbjct: 147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-04
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 238 GNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285
I N+ + + + + ++ + F + L+A+ DG+ F+
Sbjct: 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450
+ + + I++ R + D + V F + +V + +
Sbjct: 295 NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF----KGKTLVAAVEK--DGQSF 348
Query: 451 IW 452
+
Sbjct: 349 LE 350
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1395 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.98 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.66 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.63 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.58 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.57 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.47 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.04 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.01 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.99 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.72 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.63 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.6 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.58 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.58 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.58 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.53 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.42 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.37 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.07 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.05 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.04 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.87 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.87 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.87 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.25 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.13 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.45 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.44 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.3 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.97 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.78 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.29 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.25 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.2 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.16 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.89 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.49 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.92 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.85 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.64 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 89.49 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 88.91 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.4 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.43 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.87 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.41 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.94 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.5e-31 Score=303.12 Aligned_cols=250 Identities=16% Similarity=0.193 Sum_probs=207.5
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECC--Cc
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVD--GR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--gt 281 (1395)
.....|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++. ...+.+|.+.|.+|+| ++++.+|++++.+ +.
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~d~~~l~~~~~~~~~~ 127 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW-DSESKRIAAVGEGRERF 127 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE-CTTSCEEEEEECCSSCS
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccc-ccccccccccccccccc
Confidence 3455678999999999999999999999999999999998863 4568899999999999 8999999999864 56
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++||++.+++. ...+..|...|.+++|+|+++.++++|.. +.+.+|+... ++
T Consensus 128 ~~v~~~~~~~~--------------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~------------ 180 (311)
T d1nr0a1 128 GHVFLFDTGTS--------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FK------------ 180 (311)
T ss_dssp EEEEETTTCCB--------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BE------------
T ss_pred ccccccccccc--------------cccccccccccccccccccceeeecccccccccccccccc-cc------------
Confidence 99999998772 22345677889999999999987776665 5555555432 21
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCCeeEEEEeecCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-------PYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-------~h~~~~V~sV~fs~~~~ 433 (1395)
....+.+|...|+++.|+|++ ++|++|+.||.|++||.+++..+..+. +|.+ .|++++|+
T Consensus 181 -------~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s---- 247 (311)
T d1nr0a1 181 -------FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWS---- 247 (311)
T ss_dssp -------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEEC----
T ss_pred -------cccccccccccccccccCccc-cccccccccccccccccccccccccccccccccccccc-cccccccC----
Confidence 156677899999999999998 899999999999999999998888764 5776 89999999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
|++++|++++ .||+|+|||++++ ++++++..+..... ..+.+.+++.+|++++.||.|+
T Consensus 248 ~~~~~l~tgs-~Dg~v~iwd~~t~------------~~~~~l~~~~~~~~--------~~~~~~~~~~~l~s~s~dG~i~ 306 (311)
T d1nr0a1 248 PDGTKIASAS-ADKTIKIWNVATL------------KVEKTIPVGTRIED--------QQLGIIWTKQALVSISANGFIN 306 (311)
T ss_dssp TTSSEEEEEE-TTSEEEEEETTTT------------EEEEEEECCSSGGG--------CEEEEEECSSCEEEEETTCCEE
T ss_pred CCCCEEEEEe-CCCeEEEEECCCC------------cEEEEEECCCCccc--------eEEEEEecCCEEEEEECCCEEE
Confidence 9999999977 8999999999998 99999987764321 1355566677899999999999
Q ss_pred EEEcC
Q 039790 514 AIHMD 518 (1395)
Q Consensus 514 iWdl~ 518 (1395)
+||.+
T Consensus 307 ~wd~d 311 (311)
T d1nr0a1 307 FVNPE 311 (311)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99964
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.8e-30 Score=298.48 Aligned_cols=284 Identities=16% Similarity=0.190 Sum_probs=222.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
+.+.++ .|...|+|++|+++|++|++|+ ||.|+|||+..+ ......+|.+.|.+|+| ++++++|++|+.||
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~-s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-LPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-CTTSSEEEEEESSS
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEE-cCCCCEEEEeeccc
Confidence 344455 6999999999999999999997 799999999864 23345689999999999 89999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++||+..... ........+...+..++|++++..+++++.++.+..|+.....
T Consensus 120 ~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~------------- 174 (337)
T d1gxra_ 120 TLSIWDLAAPTP------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------------- 174 (337)
T ss_dssp EEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------
T ss_pred cccccccccccc------------ccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 999999986541 1234455677888899999999888777777888888764321
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
......+|...|++++|++++ .++++|+.||.|++||+++++.+..+. |.+ .|.+++|+ |++.+|+
T Consensus 175 -------~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~-~i~~l~~~----~~~~~l~ 240 (337)
T d1gxra_ 175 -------LVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTS-QIFSLGYC----PTGEWLA 240 (337)
T ss_dssp -------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSS-CEEEEEEC----TTSSEEE
T ss_pred -------ccccccccccccccccccccc-cccccccccccccccccccceeecccc-ccc-ceEEEEEc----ccccccc
Confidence 145667899999999999998 899999999999999999999988886 555 89999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .|+.|++||++++ ... ....|...+. .+.|+++|.+|++++.||.|++||+.++
T Consensus 241 ~~~-~d~~i~i~d~~~~------------~~~-~~~~~~~~i~---------~v~~s~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 241 VGM-ESSNVEVLHVNKP------------DKY-QLHLHESCVL---------SLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEE-TTSCEEEEETTSS------------CEE-EECCCSSCEE---------EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eec-ccccccccccccc------------ccc-cccccccccc---------eEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 877 9999999999887 443 3445554433 5899999999999999999999999876
Q ss_pred CCCCCcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEc
Q 039790 521 PNPASTRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv 563 (1395)
. .+..+.....+.++..... ..+ ++.|+.|+||++
T Consensus 298 ~--------~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 298 A--------SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp C--------EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred C--------EEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 4 2223333344554444431 112 346777777775
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-29 Score=295.11 Aligned_cols=281 Identities=11% Similarity=0.136 Sum_probs=229.9
Q ss_pred CCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC
Q 039790 148 QPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN 227 (1395)
Q Consensus 148 ~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd 227 (1395)
....+.+++.+..|++|+ ||.|++||+...... .........+|.+.|.+++|++|
T Consensus 53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~-----------------------~~~~~~~~~~h~~~I~~v~~s~d 108 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-----------------------SPVSQLDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-----------------------SCSEEEECSCTTSBEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc-----------------------ceeEEeeecCCCCcEEEEEEcCC
Confidence 334467788888999987 789999995422110 01122344578999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 228 RNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
|++|++|+.||.|+|||+... ....+.+|...|.+++| ++++.+|++++.|+.|++||+.+++
T Consensus 109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d~~i~~~~~~~~~------------- 174 (337)
T d1gxra_ 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDSKVCFSCCSDGNIAVWDLHNQT------------- 174 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE-------------
T ss_pred CCEEEEeeccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-------------
Confidence 999999999999999998764 35677899999999999 8999999999999999999999876
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
.......+...+.+++|++++..+++++.++.+.+|+...... +..+ .|.+.|++++|
T Consensus 175 -~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~--------------------~~~~-~~~~~i~~l~~ 232 (337)
T d1gxra_ 175 -LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------------------LQQH-DFTSQIFSLGY 232 (337)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------------EEEE-ECSSCEEEEEE
T ss_pred -cccccccccccccccccccccccccccccccccccccccccee--------------------eccc-ccccceEEEEE
Confidence 4455667788899999999999888888888888877643211 2333 48899999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
+|++ .+|++|+.||.|++||++++... ....|.+ .|++++|+ |+|++|++++ .||.|+|||+.++
T Consensus 233 ~~~~-~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~-~i~~v~~s----~~g~~l~s~s-~Dg~i~iwd~~~~------- 297 (337)
T d1gxra_ 233 CPTG-EWLAVGMESSNVEVLHVNKPDKY-QLHLHES-CVLSLKFA----YCGKWFVSTG-KDNLLNAWRTPYG------- 297 (337)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTSSCEE-EECCCSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETTTC-------
T ss_pred cccc-cccceeccccccccccccccccc-ccccccc-ccceEEEC----CCCCEEEEEe-CCCeEEEEECCCC-------
Confidence 9998 89999999999999999988865 4567877 99999999 9999999977 9999999999888
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++..+.. ...+. .++|+++|.+|++|+.||.|+|||+-
T Consensus 298 -----~~~~~~~~-~~~v~---------~~~~s~d~~~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 298 -----ASIFQSKE-SSSVL---------SCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -----CEEEEEEC-SSCEE---------EEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -----CEEEEccC-CCCEE---------EEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 77777653 33332 48999999999999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.8e-29 Score=284.46 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=219.3
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
....|.||.+.|++++|+|++++|++|+.||+|+|||+.++ .+..+.+|.+.|.+++| ++++.++++++.++.+.+|+
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSCCCEEE
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEee-eccccccccccccccccccc
Confidence 34578999999999999999999999999999999999987 57789999999999999 89999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
..... .......+...+.++.|++++..+++++.++.+.+|+.....
T Consensus 88 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------- 134 (317)
T d1vyhc1 88 FQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY------------------- 134 (317)
T ss_dssp TTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------------
T ss_pred ccccc--------------cccccccccccceeeeccCCCceEEeeccCcceeEeecccce-------------------
Confidence 98766 344455677888899999999988888878888777764321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-------------
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH------------- 433 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~------------- 433 (1395)
....+.+|...+.+++|++++ .+|++|+.||.|++||+.++..+..+.+|.. .+.++.|++...
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (317)
T d1vyhc1 135 -CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETK 211 (317)
T ss_dssp -EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC--
T ss_pred -eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCC-CceEEEEeeccccceeeccccceee
Confidence 156677899999999999998 8999999999999999999999999999987 999999982210
Q ss_pred ---CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 434 ---PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 434 ---pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
.++.++++++ .|+.|++||+.++ +++.++.+|...+. .++++++|.+|++|+.||
T Consensus 212 ~~~~~~~~~~~~~-~d~~i~~~~~~~~------------~~~~~~~~~~~~v~---------~~~~~~~~~~l~s~~~dg 269 (317)
T d1vyhc1 212 KSGKPGPFLLSGS-RDKTIKMWDVSTG------------MCLMTLVGHDNWVR---------GVLFHSGGKFILSCADDK 269 (317)
T ss_dssp -----CCEEEEEE-TTSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSCEEEEETTT
T ss_pred eeccCCceeEecc-CCCEEEEEECCCC------------cEEEEEeCCCCCEE---------EEEECCCCCEEEEEECCC
Confidence 1234667655 9999999999988 99999998886654 489999999999999999
Q ss_pred eEEEEEcCCCC
Q 039790 511 AIYAIHMDYGP 521 (1395)
Q Consensus 511 ~I~iWdl~~g~ 521 (1395)
.|++||+..++
T Consensus 270 ~i~iwd~~~~~ 280 (317)
T d1vyhc1 270 TLRVWDYKNKR 280 (317)
T ss_dssp EEEEECCTTSC
T ss_pred eEEEEECCCCc
Confidence 99999998754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=6.2e-30 Score=295.37 Aligned_cols=290 Identities=13% Similarity=0.085 Sum_probs=219.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
+.+.+.+++++|+|+.|+++. ++.|.+||+.+. ....+.+|.+.|++++| +++|++|++|+.||+|+|||+.++...
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~-sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEE-eCCCCeEeccccCceEeeeeeeccccc
Confidence 445566788999999999986 567999999986 56788999999999999 899999999999999999999987621
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-e-EEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-R-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
....+..|...|.+++|++++..+++++.+. . +.+|+. ..++. ...
T Consensus 94 ------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~-~~~~~-------------------~~~ 141 (311)
T d1nr0a1 94 ------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF-DTGTS-------------------NGN 141 (311)
T ss_dssp ------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET-TTCCB-------------------CBC
T ss_pred ------------cccccccccCcccccccccccccccccccccccccccccc-ccccc-------------------ccc
Confidence 1223456778899999999998888777542 3 444443 22221 344
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
+.+|.+.|++++|+|++..+|++|+.||.|++||+++++++..+.+|.. .|+++.|+ |++++|++++ .|+.|++
T Consensus 142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~----p~~~~l~~~~-~d~~v~~ 215 (311)
T d1nr0a1 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYN----PDGSLFASTG-GDGTIVL 215 (311)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEE
T ss_pred ccccccccccccccccceeeecccccccccccccccccccccccccccc-cccccccC----cccccccccc-ccccccc
Confidence 6679999999999999866799999999999999999999999999987 99999999 9999999977 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
||+.++ ..+..+......... +.. .+..++|+++|.+|++|+.||.|+|||+.+++ .+..+
T Consensus 216 ~d~~~~------------~~~~~~~~~~~~~~~-h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~-----~~~~l 276 (311)
T d1nr0a1 216 YNGVDG------------TKTGVFEDDSLKNVA-HSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLK-----VEKTI 276 (311)
T ss_dssp EETTTC------------CEEEECBCTTSSSCS-SSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE
T ss_pred cccccc------------ccccccccccccccc-ccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEE
Confidence 999887 666666543221111 111 22468999999999999999999999998753 22222
Q ss_pred eeee-ccccEEEEecCCCCcC--cCCCCeEEEEEcC
Q 039790 532 AEFT-VTMPILSLTGTTTDAS--PDGEHIVQIYCVQ 564 (1395)
Q Consensus 532 ~~f~-~~~~ils~~~~~~d~~--~s~dg~V~lWdv~ 564 (1395)
.... .....+++.... +.+ .+.||.|++||.+
T Consensus 277 ~~~~~~~~~~~~~~~~~-~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 277 PVGTRIEDQQLGIIWTK-QALVSISANGFINFVNPE 311 (311)
T ss_dssp ECCSSGGGCEEEEEECS-SCEEEEETTCCEEEEETT
T ss_pred ECCCCccceEEEEEecC-CEEEEEECCCEEEEEeCC
Confidence 2111 112333443333 222 3567888888763
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.8e-29 Score=283.01 Aligned_cols=275 Identities=13% Similarity=0.146 Sum_probs=237.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|.+..|++++.||+|++||+. .+..+..+.+|.+.|.+++|++++.++
T Consensus 23 l~~sp~~~~l~s~s~Dg~i~iWd~~----------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 23 VIFHPVFSVMVSASEDATIKVWDYE----------------------------TGDFERTLKGHTDSVQDISFDHSGKLL 74 (317)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETT----------------------------TCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----------------------------CCCEEEEEeCCCCcEEEEeeecccccc
Confidence 5566777899999999999999943 124556778899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.++.+.+|+.... ....+.+|...+.++.| .+++.+|++++.|+.+++||+.++. .+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~--------------~~~~~ 139 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRDKTIKMWEVQTGY--------------CVKTF 139 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCC--------------EEEEE
T ss_pred cccccccccccccccccccccccccccccceeeec-cCCCceEEeeccCcceeEeecccce--------------eeeEE
Confidence 99999999999998876 46677889999999999 8999999999999999999999887 45556
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT- 389 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~- 389 (1395)
..+...+.+++|++++..+++++.++.+..|+..... ....+.+|...+.+++|++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~--------------------~~~~~~~~~~~i~~~~~~~~~~~ 199 (317)
T d1vyhc1 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------------------CKAELREHRHVVECISWAPESSY 199 (317)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------------EEEEECCCSSCEEEEEECCSCGG
T ss_pred ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce--------------------eeEEEecCCCCceEEEEeecccc
Confidence 6788889999999999887777777777777764321 1456677888899998887642
Q ss_pred ------------------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 390 ------------------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 390 ------------------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.++++|+.||.|++||+++++++.++.+|.+ .|.+++|+ |++++|++++ .||.|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~s~~-~dg~i~i 273 (317)
T d1vyhc1 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFH----SGGKFILSCA-DDKTLRV 273 (317)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSCEEEEE-TTTEEEE
T ss_pred ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEC----CCCCEEEEEE-CCCeEEE
Confidence 4799999999999999999999999999997 99999999 9999999977 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
||+.++ +++.++.+|...+. .++|+++|.+|++|+.||+|+|||
T Consensus 274 wd~~~~------------~~~~~~~~h~~~V~---------~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 274 WDYKNK------------RCMKTLNAHEHFVT---------SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECCTTS------------CCCEEEECCSSCEE---------EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCC------------cEEEEEcCCCCCEE---------EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999988 88999999887654 489999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.7e-29 Score=295.44 Aligned_cols=308 Identities=14% Similarity=0.110 Sum_probs=221.6
Q ss_pred CCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE
Q 039790 147 HQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI 224 (1395)
Q Consensus 147 ~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~ 224 (1395)
.....+.+++++..|++|+ |+.|++|++. +|+.+ ......... ...........+|...|++++|
T Consensus 63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~V~~l~~ 129 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANK----------DPENLNTSSSPSSDLYIRSVCF 129 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC---------------------------CCCCBEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEe-CCeEEEEEec--ccceEeeecccccccc----------cccccccccccCCCCCEEEEEE
Confidence 3334477788889999987 8999999954 45555 111100000 0011122344578899999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 225 AVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 225 Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
+++|++|++|+.||.|++||...+. ...+.+|...|.+++| .+++..+++|+.+|.|++||+.+..
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~------------ 196 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQ------------ 196 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTE------------
T ss_pred CCCCCcceeccccccccccccccccccccccccccccccccc-ccccccccccccceeeeeeeccccc------------
Confidence 9999999999999999999999874 6788899999999999 8899999999999999999998765
Q ss_pred EEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
.......+ ....++.|++.. ..+++++.++.+.+|+........ ..........+|.+.|+++
T Consensus 197 --~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-------------~~~~~~~~~~~h~~~v~~l 260 (388)
T d1erja_ 197 --CSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-------------RLDSENESGTGHKDSVYSV 260 (388)
T ss_dssp --EEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-------------EEC------CCCSSCEEEE
T ss_pred --cccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccce-------------eeccccccccCCCCCEEEE
Confidence 22233333 334456666654 445555556666666654322111 1111133456799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCc------------eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKST------------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~------------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+|+|++ .+|++|+.||.|++||++++. +......|.. .|++++|+ |+|++|++++ .||.|+
T Consensus 261 ~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~l~sg~-~dg~i~ 333 (388)
T d1erja_ 261 VFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATT----QNDEYILSGS-KDRGVL 333 (388)
T ss_dssp EECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEEC----GGGCEEEEEE-TTSEEE
T ss_pred EECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc-eEEEEEEC----CCCCEEEEEe-CCCEEE
Confidence 999998 899999999999999997643 3455667877 99999999 9999999976 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|||+.++ +++.++.+|.+.+.... +.....|+++|.+|++|+.||+|+||+++
T Consensus 334 vwd~~~~------------~~~~~l~~H~~~V~~~~---~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 334 FWDKKSG------------NPLLMLQGHRNSVISVA---VANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEETTTC------------CEEEEEECCSSCEEEEE---ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECCCC------------cEEEEEeCCCCCEEEEE---EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999988 99999999988765411 11123467899999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-28 Score=289.83 Aligned_cols=256 Identities=16% Similarity=0.231 Sum_probs=197.9
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEe------------------ccCCCCeEEEEEeeCCCCEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLL------------------RGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l------------------~~H~~~V~slaf~s~dg~~La 274 (1395)
+|.+.|+|++|++||++||+|+ ||.|+|||+.++. +..+ .+|...|++|+| ++++++|+
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~~~~l~ 137 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-SPDGKFLA 137 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-CTTSSEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE-CCCCCcce
Confidence 6999999999999999999987 8999999998863 2222 357778999999 89999999
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+|+.||+|++||...++ .+.....|...+.++.|++++..++.++.++.+.+|+......
T Consensus 138 s~~~dg~v~i~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------ 197 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRK--------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------ 197 (388)
T ss_dssp EEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------
T ss_pred ecccccccccccccccc--------------cccccccccccccccccccccccccccccceeeeeeecccccc------
Confidence 99999999999999876 4556677888999999999998888877778887777643211
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCCeeEEE
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-------PYDGHPVNCVT 427 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-------~h~~~~V~sV~ 427 (1395)
.... .+.....++.|++.++.+|++|+.||.|++||++++..+..+. +|.+ .|++++
T Consensus 198 --------------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~ 261 (388)
T d1erja_ 198 --------------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVV 261 (388)
T ss_dssp --------------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEE
T ss_pred --------------cccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEE
Confidence 2223 3455566677776555899999999999999999998777654 5776 899999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |++.+|++++ .|+.|++||+.++...........+.+...+..|...+. .++|+++|.+|++|+
T Consensus 262 ~s----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s~~~~~l~sg~ 327 (388)
T d1erja_ 262 FT----RDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL---------SVATTQNDEYILSGS 327 (388)
T ss_dssp EC----TTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEE---------EEEECGGGCEEEEEE
T ss_pred EC----CCCCEEEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEE---------EEEECCCCCEEEEEe
Confidence 99 9999999977 999999999987633222222233455666666665443 589999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 039790 508 KKNAIYAIHMDYGP 521 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~ 521 (1395)
.||.|++||+.+++
T Consensus 328 ~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 328 KDRGVLFWDKKSGN 341 (388)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCEEEEEECCCCc
Confidence 99999999998764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.6e-28 Score=279.66 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=206.6
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
...+..++|.||.+.|++++|++++++||+|+.||+|+|||+.++. +..+.+|...|.+++| ++++.+|++|+.|+.|
T Consensus 43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY-APSGNYVACGGLDNIC 121 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEE-CTTSSEEEEEETTCCE
T ss_pred cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEe-eccceeeeeeccccee
Confidence 4456778899999999999999999999999999999999999884 6788999999999999 8999999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
++|+........ ........+........+. .+..+.....+.....++......
T Consensus 122 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------- 176 (340)
T d1tbga_ 122 SIYNLKTREGNV----------RVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQ-------------- 176 (340)
T ss_dssp EEEESSSSCSCC----------CEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEE--------------
T ss_pred eccccccccccc----------ccceecccccccccccccc-cccccccccccccccccccccccc--------------
Confidence 999988755211 1223334444444333333 334455555555555555432211
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
......+...+..+.+.+.+ .++++|+.|+.|++||+++++++.++.+|.+ .|++|+|+ |++.+|+++
T Consensus 177 ------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~----p~~~~l~s~ 244 (340)
T d1tbga_ 177 ------TTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFF----PNGNAFATG 244 (340)
T ss_dssp ------EEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSS-CEEEEEEC----TTSSEEEEE
T ss_pred ------cccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCC-CeEEEEEC----CCCCEEEEE
Confidence 34445677889999999987 8999999999999999999999999999998 99999999 999999997
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ .|+.|++||+... ..+..+...... .....+.|+++|.+|++|+.||.|++||+..++
T Consensus 245 s-~d~~i~~~~~~~~------------~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 245 S-DDATCRLFDLRAD------------QELMTYSHDNII-------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp E-TTSCEEEEETTTT------------EEEEEECCTTCC-------SCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred e-CCCeEEEEeeccc------------cccccccccccc-------CceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence 7 9999999999887 666666443321 112368999999999999999999999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.3e-29 Score=295.80 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=203.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
...|+|++|++||++||+|+.||.|+|||..++ ++..+.+|.+.|++|+| ++++++|++|+.|++|+|||+.++.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~f-sp~~~~l~s~s~D~~i~vWd~~~~~- 84 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVTCGTDRNAYVWTLKGRT- 84 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEE-ETTTTEEEEEETTSCEEEEEEETTE-
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEE-CCCCCEEEEEECCCeEEEEeecccc-
Confidence 467999999999999999999999999999877 46678999999999999 8999999999999999999998764
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
......+..+...+.+++|+|++..+++++.++.+.+|+....... .......
T Consensus 85 -----------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~----------------~~~~~~~ 137 (371)
T d1k8kc_ 85 -----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW----------------WVCKHIK 137 (371)
T ss_dssp -----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE----------------EEEEEEC
T ss_pred -----------cccccccccccccccccccccccccceeecccCcceeeeeeccccc----------------ccccccc
Confidence 1233345567788999999999988888777777777755332211 0013445
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC------------------CceeEEecCCCCCCeeEEEEeecCCC
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK------------------STPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s------------------g~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
..|...|++++|+|++ .+|++|+.||+|++||... +..+....+|.+ .|.+++|+ |
T Consensus 138 ~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~ 211 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFS----A 211 (371)
T ss_dssp TTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEEC----S
T ss_pred cccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEee----c
Confidence 6799999999999998 8999999999999999764 245667778887 99999999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
+|++|++++ .|+.|++||+.++ .++..+..|...+. .++|+++|.+|++|. |+.+++
T Consensus 212 ~g~~l~s~~-~d~~i~iwd~~~~------------~~~~~~~~~~~~v~---------s~~fs~d~~~la~g~-d~~~~~ 268 (371)
T d1k8kc_ 212 NGSRVAWVS-HDSTVCLADADKK------------MAVATLASETLPLL---------AVTFITESSLVAAGH-DCFPVL 268 (371)
T ss_dssp SSSEEEEEE-TTTEEEEEEGGGT------------TEEEEEECSSCCEE---------EEEEEETTEEEEEET-TSSCEE
T ss_pred ccccccccc-cCCcceEEeeecc------------cceeeeecccccce---------eeeecCCCCEEEEEc-CCceEE
Confidence 999999977 8999999999888 89999998876654 489999998887665 677777
Q ss_pred EEcCC
Q 039790 515 IHMDY 519 (1395)
Q Consensus 515 Wdl~~ 519 (1395)
|.+..
T Consensus 269 ~~~~~ 273 (371)
T d1k8kc_ 269 FTYDS 273 (371)
T ss_dssp EEEET
T ss_pred EEeeC
Confidence 77654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-27 Score=273.44 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=230.5
Q ss_pred eeeeeCCCCCE-EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 209 ITKYISDPGLV-LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 209 i~~l~~h~~~V-~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
..+|+||.+.| +|+ ++++++||+|+.||+|+|||+.++ .+..+.+|.+.|++|+| +++ .+|++|+.||+|++|+
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~-s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE-ETT-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEE-cCC-CEEEEEeccccccccc
Confidence 56789998875 555 456899999999999999999987 47889999999999999 664 6899999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc--
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV-- 362 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~-- 362 (1395)
+.... ...... ........+.+++++..+++++.++.+.+|+.........+..........
T Consensus 81 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 146 (355)
T d1nexb2 81 IKKGC--------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 146 (355)
T ss_dssp TTTTE--------------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred ccccc--------------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence 98765 121222 222233455677777767777777777777765432211111111110000
Q ss_pred -cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 363 -DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 363 -~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
............|...+.+.. +++ .+++++..|+.|++||+++++.+..+.++.. .+.++.|+ +++.++++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~--~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~ 218 (355)
T d1nexb2 147 PEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYD----HERKRCIS 218 (355)
T ss_dssp TTTCTTEEEEEECCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEE----TTTTEEEE
T ss_pred cccccceeeeeeeccccccccc--ccc-ceeeeecccceeeeeecccccceeeeecccc-cccccccc----ccceeeec
Confidence 011111344455666666554 445 7999999999999999999999999998887 89999999 99999998
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++ .|++|++||+.++ .++..+.+|...+. .+.+ ++.+|++++.||.|++||+..+.
T Consensus 219 ~~-~d~~i~i~d~~~~------------~~~~~~~~h~~~v~---------~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 219 AS-MDTTIRIWDLENG------------ELMYTLQGHTALVG---------LLRL--SDKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp EE-TTSCEEEEETTTC------------CEEEEECCCSSCCC---------EEEE--CSSEEEEECTTSEEEEEETTTCC
T ss_pred cc-ccceEEeeecccc------------cccccccccccccc---------cccc--ccceeeeeecccccccccccccc
Confidence 76 9999999999988 89999998886653 3555 46899999999999999997643
Q ss_pred CCCCcceeeeeeeecc-ccEEEEecCCCCcC-cCCCCeEEEEEcCCCceee----ecccceEEecCCCCCeecccCCCce
Q 039790 522 NPASTRMDYIAEFTVT-MPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQQ----YALDLSQCLPPPLENAELEKTDSNA 595 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~-~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~~----~~~~~~~cl~~s~d~l~~~~sd~~v 595 (1395)
. . +...... ..+..+.... ..+ .+.|+.|+|||++++++.. .+.....|+.++++.+.++.++++.
T Consensus 275 ~----~---~~~~~~~~~~~~~~~~~~-~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~ 346 (355)
T d1nexb2 275 R----K---FSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 346 (355)
T ss_dssp E----E---EEEECTTCCCCCEEEECS-SEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSC
T ss_pred e----e---cccccCCceEEEEEcCCC-CEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCc
Confidence 1 1 1111111 1111222221 112 3458899999999987642 2444577888888876655544454
Q ss_pred EEEe
Q 039790 596 TRAF 599 (1395)
Q Consensus 596 ~~iW 599 (1395)
+++|
T Consensus 347 ~~l~ 350 (355)
T d1nexb2 347 SFLE 350 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2.4e-28 Score=277.35 Aligned_cols=252 Identities=11% Similarity=0.075 Sum_probs=195.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEe-ccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLL-RGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l-~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
...+.+.||.+.|++++|+|||++|++|+.||+|+|||+.++. ...+ .+|...|++++| ++++. +++++.|+.|++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~-~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE-CTTSC-EEEEETTTEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEe-eccce-eecccceeeEEE
Confidence 4567889999999999999999999999999999999999875 4444 479999999999 88886 566778999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|++......... .....+...+..++|++++. +++++.++.+.+|+....
T Consensus 81 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~------------------ 130 (299)
T d1nr0a2 81 VPAGGSGVDSSK-----------AVANKLSSQPLGLAVSADGD-IAVAACYKHIAIYSHGKL------------------ 130 (299)
T ss_dssp ECSSSSSSCTTS-----------CCEEECSSCEEEEEECTTSS-CEEEEESSEEEEEETTEE------------------
T ss_pred eccCCccccccc-----------cccccccccccccccccccc-cccccccccccccccccc------------------
Confidence 998764421111 11123455667899999886 556667777877764221
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
... .....+.+++|+|++ .+|++|+.||.|++||++++.... ....|.+ .|++++|+ |++.+|++++
T Consensus 131 ----~~~--~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~----~~~~~l~~~~ 198 (299)
T d1nr0a2 131 ----TEV--PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA-EITSVAFS----NNGAFLVATD 198 (299)
T ss_dssp ----EEE--ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSS-CEEEEEEC----TTSSEEEEEE
T ss_pred ----ccc--ccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccc----cccccccccc
Confidence 111 234568899999998 899999999999999998887554 3446776 99999999 9999999976
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|+.|++||+.++ ........+.+|...+. .++|+++|.+|++|+.||.|++||+..+.
T Consensus 199 -~d~~i~~~~~~~~---------~~~~~~~~~~~h~~~v~---------~l~~s~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 199 -QSRKVIPYSVANN---------FELAHTNSWTFHTAKVA---------CVSWSPDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp -TTSCEEEEEGGGT---------TEESCCCCCCCCSSCEE---------EEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred -ccccccccccccc---------ccccccccccccccccc---------cccccccccceEEEcCCCEEEEEECCCCC
Confidence 9999999999876 11122234445554433 48999999999999999999999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.3e-27 Score=281.87 Aligned_cols=260 Identities=15% Similarity=0.085 Sum_probs=201.4
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
..++++++..|++++.|+.|++|+... + +...+..+.+|.+.|.+++|+|++++
T Consensus 12 ~~~~s~dg~~la~~~~~~~i~iw~~~~--------------------~------~~~~~~~l~gH~~~V~~l~fsp~~~~ 65 (371)
T d1k8kc_ 12 CHAWNKDRTQIAICPNNHEVHIYEKSG--------------------N------KWVQVHELKEHNGQVTGVDWAPDSNR 65 (371)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEET--------------------T------EEEEEEEEECCSSCEEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCC--------------------C------CEEEEEEecCCCCCEEEEEECCCCCE
Confidence 356677888999999999999998321 0 11345678899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
|++|+.||+|+|||+.++. ...+.+|...|++++| ++++++|++|+.|++|++|++..... .....
T Consensus 66 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~-~p~~~~l~~~s~d~~i~i~~~~~~~~----------~~~~~ 134 (371)
T d1k8kc_ 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW-APNEKKFAVGSGSRVISICYFEQEND----------WWVCK 134 (371)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE-CTTSSEEEEEETTSSEEEEEEETTTT----------EEEEE
T ss_pred EEEEECCCeEEEEeeccccccccccccccccccccccc-ccccccceeecccCcceeeeeecccc----------ccccc
Confidence 9999999999999998763 4466789999999999 89999999999999999999987551 22234
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.....+...+.++.|+|++..+++++.++.+.+|+.......... ....+ .........+....+|.+.|++++|+|+
T Consensus 135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 212 (371)
T d1k8kc_ 135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP-APTPW-GSKMPFGELMFESSSSCGWVHGVCFSAN 212 (371)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC-CCBTT-BSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred ccccccccccccccccccccceeccccCcEEEEEeeccCcccccc-ccccc-cccccceeeeeeccCccCcEEEEEeecc
Confidence 455667888999999999988777777787777765432111000 00000 0000111224556789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
| .+|++++.||+|++||+.++.++..+.+|.. +|.+|+|+ +|+.+|++ | .|+.+++|+....
T Consensus 213 g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs----~d~~~la~-g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 213 G-SRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFI----TESSLVAA-G-HDCFPVLFTYDSA 274 (371)
T ss_dssp S-SEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEE----ETTEEEEE-E-TTSSCEEEEEETT
T ss_pred c-ccccccccCCcceEEeeecccceeeeecccc-cceeeeec----CCCCEEEE-E-cCCceEEEEeeCC
Confidence 8 8999999999999999999999999999987 99999999 89977765 6 6888888776543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=9.1e-27 Score=266.61 Aligned_cols=273 Identities=15% Similarity=0.148 Sum_probs=226.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+.+..|++|+.||.|++||+. .+..+..+..|...|.+++|++++++|
T Consensus 61 l~~s~~~~~l~sgs~Dg~v~iWd~~----------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~l 112 (340)
T d1tbga_ 61 MHWGTDSRLLVSASQDGKLIIWDSY----------------------------TTNKVHAIPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETT----------------------------TTEEEEEEECSCSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEECCCceeeeecc----------------------------cceeEEEEecccccEEeeEeeccceee
Confidence 6677788999999999999999944 124456677899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.|+.|++|+.... ....+.+|...+....+ ..+..++.+..|+..+.|+..... .
T Consensus 113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 176 (340)
T d1tbga_ 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQ--------------Q 176 (340)
T ss_dssp EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEE--EETTEEEEEETTTEEEEEETTTTE--------------E
T ss_pred eeecccceeecccccccccccccceeccccccccccccc--cccccccccccccccccccccccc--------------c
Confidence 99999999999998765 34567888887777666 345678889999999999988654 3
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..........+....+.+.+..+++++.++.+.+|+.... . .+..+.+|.+.|++++|+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-~-------------------~~~~~~~h~~~i~~v~~~p 236 (340)
T d1tbga_ 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-M-------------------CRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-E-------------------EEEEECCCSSCEEEEEECT
T ss_pred cccccccceeEeeeccccccceeEEeecCceEEEEECCCC-c-------------------EEEEEeCCCCCeEEEEECC
Confidence 3444556667778888888877777777777777765332 1 1567788999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
++ .+|++|+.||.|++||++....+..+. .|.. .|.+++|+ +++++|++++ .||.|+|||+.++
T Consensus 237 ~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s----~~~~~l~~g~-~dg~i~iwd~~~~------- 302 (340)
T d1tbga_ 237 NG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFS----KSGRLLLAGY-DDFNCNVWDALKA------- 302 (340)
T ss_dssp TS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCS-CEEEEEEC----SSSCEEEEEE-TTSCEEEEETTTC-------
T ss_pred CC-CEEEEEeCCCeEEEEeecccccccccccccccC-ceEEEEEC----CCCCEEEEEE-CCCEEEEEECCCC-------
Confidence 98 899999999999999999998887764 3444 79999999 9999999976 9999999999988
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+++.++.+|...+. .++|+++|.+|++|+.||.|+|||
T Consensus 303 -----~~~~~~~~H~~~V~---------~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 303 -----DRAGVLAGHDNRVS---------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----CEEEEECCCSSCEE---------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----cEEEEEcCCCCCEE---------EEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999987654 489999999999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=268.62 Aligned_cols=258 Identities=11% Similarity=0.119 Sum_probs=198.4
Q ss_pred cceeeeeCCC-CCEEEEEEec--CCCEEEEEEcCCeEEEEECCCCc---------eEEeccCCCCeEEEEEeeCCCCEEE
Q 039790 207 TPITKYISDP-GLVLGRQIAV--NRNYICYGLKLGNIRILNIITAL---------RSLLRGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 207 ~~i~~l~~h~-~~V~~va~Sp--dg~~LasGs~DG~IrIWd~~~~~---------~~~l~~H~~~V~slaf~s~dg~~La 274 (1395)
..+..+.+|. ..|++++|+| +|.+||+|+.||+|+|||+..+. ...+..|.+.|.+++| ++++.+|+
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~ 131 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DFEGRRLC 131 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE-CTTSSEEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEE-CCCCCccc
Confidence 4456677775 6799999997 67899999999999999987641 2345678999999999 89999988
Q ss_pred EEEC--CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCcccc
Q 039790 275 SASV--DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGER 351 (1395)
Q Consensus 275 Sgs~--DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~ 351 (1395)
+++. ++.+++|+..+++ .+..+..|...+.+++|++++..+++++. ++.+.+|+... .+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~-- 194 (325)
T d1pgua1 132 VVGEGRDNFGVFISWDSGN--------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKF-- 194 (325)
T ss_dssp EEECCSSCSEEEEETTTCC--------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEE--
T ss_pred eeeccccceEEEEeecccc--------------cceeeeecccccccccccccccceEEEeecccccccccccc-ccc--
Confidence 8765 6789999999877 55666778899999999999987666555 55555555422 111
Q ss_pred ccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 352 FSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 352 ~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
........+|...|++++|+|+++.+|++|+.||.|++||+++++++.++.+|.. .+.++.|+..
T Consensus 195 --------------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~ 259 (325)
T d1pgua1 195 --------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALS 259 (325)
T ss_dssp --------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEE
T ss_pred --------------ceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeee
Confidence 0012223468889999999998768999999999999999999999999998876 6554444311
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
. ++|++|++++ .|++|+|||+.++ ++++.+..+...... ....+.+.. +.+|++++.||.
T Consensus 260 ~-~dg~~l~s~s-~D~~i~iwd~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~l~s~s~dg~ 319 (325)
T d1pgua1 260 W-LDSQKFATVG-ADATIRVWDVTTS------------KCVQKWTLDKQQLGN-----QQVGVVATG-NGRIISLSLDGT 319 (325)
T ss_dssp E-SSSSEEEEEE-TTSEEEEEETTTT------------EEEEEEECCTTCGGG-----CEEEEEEEE-TTEEEEEETTSC
T ss_pred c-cCCCEEEEEe-CCCeEEEEECCCC------------CEEEEEEecCCcccC-----eEEEEEECC-CCEEEEEECCCE
Confidence 1 6899999977 9999999999988 999999887754322 111233333 447889999999
Q ss_pred EEEEEc
Q 039790 512 IYAIHM 517 (1395)
Q Consensus 512 I~iWdl 517 (1395)
|++||+
T Consensus 320 i~vwdl 325 (325)
T d1pgua1 320 LNFYEL 325 (325)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1e-25 Score=256.84 Aligned_cols=316 Identities=16% Similarity=0.221 Sum_probs=221.5
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
++...++||.+.|.+ +++++|++||+|+.||+|+|||+.++ ++..+.+|.+.|++++| ++ ++|++|+.|+++++|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~-~~--~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RD--NIIISGSTDRTLKVW 82 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE-ET--TEEEEEETTSCEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEe-CC--Cccccceeccccccc
Confidence 566789999999865 37778999999999999999999987 47789999999999999 54 599999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
+..... ...........+... ......++.+..++.+..|+......
T Consensus 83 ~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~----------------- 129 (342)
T d2ovrb2 83 NAETGE--------------CIHTLYGHTSTVRCM--HLHEKRVVSGSRDATLRVWDIETGQC----------------- 129 (342)
T ss_dssp ETTTTE--------------EEEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEESSSCCE-----------------
T ss_pred cccccc--------------ceecccccceeEeee--ecccccccccccceeEEEeecccccc-----------------
Confidence 998754 122222233333223 33334566666666666666533211
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
...+..+..... .+.... .++++++.|+.|++||.+.+.++..+.+|.. .+..+.+ ++.+|++++ .
T Consensus 130 ---~~~~~~~~~~~~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~------~~~~l~s~~-~ 195 (342)
T d2ovrb2 130 ---LHVLMGHVAAVR--CVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF------DGIHVVSGS-L 195 (342)
T ss_dssp ---EEEEECCSSCEE--EEEECS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE------CSSEEEEEE-T
T ss_pred ---eeeeecccccce--eecccc-ceeeeecCCCeEEEeecccceeeEEEcCccc-ccccccC------CCCEEEEEe-C
Confidence 222322333222 233344 6899999999999999999999999999975 5555544 688899876 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
||.|++||+..+ +++..+..|...+ .++++++.+|++++.|+.|++|++...+.
T Consensus 196 dg~i~~~d~~~~------------~~~~~~~~~~~~v-----------~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--- 249 (342)
T d2ovrb2 196 DTSIRVWDVETG------------NCIHTLTGHQSLT-----------SGMELKDNILVSGNADSTVKIWDIKTGQC--- 249 (342)
T ss_dssp TSCEEEEETTTC------------CEEEEECCCCSCE-----------EEEEEETTEEEEEETTSCEEEEETTTCCE---
T ss_pred CCeEEEeecccc------------eeeeEecccccce-----------eEEecCCCEEEEEcCCCEEEEEecccccc---
Confidence 999999999988 8899888877543 34455678999999999999999977531
Q ss_pred cceeeeeeeec-cccEEEEecCCCCcC--cCCCCeEEEEEcCCCceee-e-------cccceEEecCCCCC--eecccCC
Q 039790 526 TRMDYIAEFTV-TMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQ-Y-------ALDLSQCLPPPLEN--AELEKTD 592 (1395)
Q Consensus 526 ~~~~~i~~f~~-~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~-~-------~~~~~~cl~~s~d~--l~~~~sd 592 (1395)
...+..... ...+..+.... +.+ ++.||.|+|||+.++++.+ + +.....|+.+++++ ++++..|
T Consensus 250 --~~~~~~~~~~~~~~~~~~~~~-~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d 326 (342)
T d2ovrb2 250 --LQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326 (342)
T ss_dssp --EEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred --cccccccceeeeceeecccCC-CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 122222111 12333443333 333 4679999999999987642 2 23346788888886 4444433
Q ss_pred C---ceEEEeecC
Q 039790 593 S---NATRAFDVA 602 (1395)
Q Consensus 593 ~---~v~~iWD~~ 602 (1395)
+ ..+++||..
T Consensus 327 Gt~~~~l~~~Df~ 339 (342)
T d2ovrb2 327 GTEETKLLVLDFD 339 (342)
T ss_dssp SSSCCEEEEEECC
T ss_pred CCCeeEEEEEeCC
Confidence 2 247899974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.2e-26 Score=263.91 Aligned_cols=284 Identities=14% Similarity=0.195 Sum_probs=205.7
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+.+++..|++|+.||+|++||+. .++.+..+.+|.+.|++++|+++ .+|++
T Consensus 19 ~~~~~~~l~tgs~Dg~i~vWd~~----------------------------~~~~~~~l~~H~~~V~~l~~s~~-~~l~s 69 (355)
T d1nexb2 19 LQFEDNYVITGADDKMIRVYDSI----------------------------NKKFLLQLSGHDGGVWALKYAHG-GILVS 69 (355)
T ss_dssp EEEETTEEEEEETTTEEEEEETT----------------------------TTEEEEEEECCSSCEEEEEEETT-TEEEE
T ss_pred EEECCCEEEEEeCCCeEEEEECC----------------------------CCcEEEEEECCCCCEEEEEEcCC-CEEEE
Confidence 45567899999999999999943 12456778899999999999985 58999
Q ss_pred EEcCCeEEEEECCCCce-EEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE------
Q 039790 234 GLKLGNIRILNIITALR-SLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV------ 304 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~~-~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i------ 304 (1395)
|+.||.|++|+...... .... .+...+..+.+ .+++.++++++.||+|++||+.++..............
T Consensus 70 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d1nexb2 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148 (355)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEE-ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred Eeccccccccccccccccccccccccccccccccc-ccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence 99999999999998743 2222 23334455556 78899999999999999999988653221110000000
Q ss_pred ---EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 305 ---VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 305 ---~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
..+.....+... ...+.+++..++.+..++.+..|+.... + .+....++...+.+
T Consensus 149 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~-~-------------------~~~~~~~~~~~~~~ 206 (355)
T d1nexb2 149 ENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQM-K-------------------CLYILSGHTDRIYS 206 (355)
T ss_dssp TCTTEEEEEECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCSSCEEE
T ss_pred cccceeeeeeecccc--ccccccccceeeeecccceeeeeecccc-c-------------------ceeeeecccccccc
Confidence 011111222222 2345556666666666777777765332 1 14566778899999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
+.|++++ .++++++.||+|++||++++.++..+.+|.+ .|.++.|+ +++|++++ .||+|++||+.+.
T Consensus 207 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~------~~~l~~~~-~dg~i~iwd~~~~---- 273 (355)
T d1nexb2 207 TIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS------DKFLVSAA-ADGSIRGWDANDY---- 273 (355)
T ss_dssp EEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCEEEEC------SSEEEEEC-TTSEEEEEETTTC----
T ss_pred ccccccc-eeeecccccceEEeeeccccccccccccccc-cccccccc------cceeeeee-ccccccccccccc----
Confidence 9999998 8999999999999999999999999999998 99999996 46888866 9999999999876
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. +.+..|...+.. ..++++++.+|++|+ ||.|++||+++|+
T Consensus 274 --------~--~~~~~~~~~~~~--------~~~~~~~~~~l~~g~-d~~i~vwd~~tg~ 314 (355)
T d1nexb2 274 --------S--RKFSYHHTNLSA--------ITTFYVSDNILVSGS-ENQFNIYNLRSGK 314 (355)
T ss_dssp --------C--EEEEEECTTCCC--------CCEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred --------c--eecccccCCceE--------EEEEcCCCCEEEEEe-CCEEEEEECCCCC
Confidence 3 344555544322 467788898887775 8999999999876
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.2e-26 Score=264.12 Aligned_cols=254 Identities=16% Similarity=0.135 Sum_probs=192.1
Q ss_pred CCEEEEEEecCCCEEEEEEcCC-eEEEEECCCC---ceEEeccCC-CCeEEEEEeeC--CCCEEEEEECCCcEEEEECCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLG-NIRILNIITA---LRSLLRGHT-QRVTDMAFFAE--DVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG-~IrIWd~~~~---~~~~l~~H~-~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~t 289 (1395)
+.+++++|+++|++|++++.+. .|+.||.... ....+.+|. ..|++++| +| ++.+|++|+.||+|+|||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~f-sP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKF-SPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEE-CSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEE-eeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3567889999999999987654 3566765443 466778874 67999999 54 678999999999999999987
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
+...... .......+..+...+.+++|++++..+++++.+ +.+..|+. ..++
T Consensus 97 ~~~~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~-~~~~------------------- 150 (325)
T d1pgua1 97 DKESNSV------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW-DSGN------------------- 150 (325)
T ss_dssp EGGGTEE------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET-TTCC-------------------
T ss_pred Ccceeee------ecccccccccccCcEEEEEECCCCCccceeeccccceEEEEee-cccc-------------------
Confidence 6521111 111122345677889999999999988887753 33444432 2221
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCC-CcEEEEEe
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQ-HIVLITGG 443 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pd-g~~L~s~G 443 (1395)
.+..+.+|...|++++|++++..++++++.||.|++||...++....+. +|.+ .|++++|+ |+ +.+|++++
T Consensus 151 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~v~~v~~~----pd~~~~l~s~~ 225 (325)
T d1pgua1 151 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS-FVRDVEFS----PDSGEFVITVG 225 (325)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC-CEEEEEEC----STTCCEEEEEE
T ss_pred cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCC-ccEEeeec----cccceeccccc
Confidence 2567788999999999999986678999999999999999887766664 4555 89999999 86 56777766
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|+.|+|||++++ +++.++.+|...+.. ....+.+ ++|.+|++++.|+.|+|||+.+++
T Consensus 226 -~d~~i~iwd~~~~------------~~~~~l~~~~~~v~~-----~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 226 -SDRKISCFDGKSG------------EFLKYIEDDQEPVQG-----GIFALSW-LDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp -TTCCEEEEETTTC------------CEEEECCBTTBCCCS-----CEEEEEE-SSSSEEEEEETTSEEEEEETTTTE
T ss_pred -cccceeeeeeccc------------ccccccccccccccc-----ceeeeec-cCCCEEEEEeCCCeEEEEECCCCC
Confidence 9999999999988 899999988766533 1112333 689999999999999999998754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.4e-25 Score=247.78 Aligned_cols=243 Identities=16% Similarity=0.245 Sum_probs=194.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..+..|...|+|++ +||++||+|+.||+|+|||+.++ ++..+.+|.+.|++|+| ++++|++|+.||+|++|
T Consensus 6 ~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEE
T ss_pred EEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeeccccccccccc
Confidence 45566778889999865 58999999999999999999987 57899999999999998 67899999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
++..+. ........ ......+......++++..++.+..|+.......
T Consensus 81 ~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 128 (293)
T d1p22a2 81 DVNTGE--------------MLNTLIHH--CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------------- 128 (293)
T ss_dssp ESSSCC--------------EEEEECCC--CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC----------------
T ss_pred cccccc--------------cccccccc--ccccccccccccceeecccccceeEeeccccccc----------------
Confidence 999876 12222222 2234556666667777777888877776443221
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.....+..|...|.++.+.. ..+++++.|+.|++||+++++++..+.+|.. .|..+.|+ +.+|++++ .
T Consensus 129 -~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~~~-~ 196 (293)
T d1p22a2 129 -TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR------DRLVVSGS-S 196 (293)
T ss_dssp -EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE------TTEEEEEE-T
T ss_pred -cccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEccccc-ccccccCC------CCeEEEec-C
Confidence 11455677899999888875 5788999999999999999999999999987 88888886 56788866 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++|+|||+++. .++..+..+... +..++.++.+|++|+.||.|++||+..+.
T Consensus 197 dg~i~i~d~~~~------------~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 249 (293)
T d1p22a2 197 DNTIRLWDIECG------------ACLRVLEGHEEL-----------VRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249 (293)
T ss_dssp TSCEEEEETTTC------------CEEEEECCCSSC-----------EEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCEEEEEecccc------------eeeeeeccccee-----------eeeccccceEEEEEcCCCEEEEEECCCCc
Confidence 999999999988 888888776654 35677899999999999999999987643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.5e-25 Score=254.13 Aligned_cols=272 Identities=10% Similarity=0.079 Sum_probs=202.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeee-eCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY-ISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l-~~h~~~V~~va~Spdg~~ 230 (1395)
+.+++++..|++++.||+|++||+.. | ..+..+ .+|...|++++|+++|++
T Consensus 18 l~~s~dg~~l~s~s~Dg~v~vWd~~~--~--------------------------~~~~~~~~~h~~~v~~v~~~~~g~~ 69 (299)
T d1nr0a2 18 LSSSADGKTLFSADAEGHINSWDIST--G--------------------------ISNRVFPDVHATMITGIKTTSKGDL 69 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT--C--------------------------CEEECSSCSCSSCEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCC--C--------------------------cEEEEEcCCCCCcEEEEEeecccee
Confidence 66778889999999999999999541 1 122233 468899999999999985
Q ss_pred EEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+ +++.|+.|++|+..... ......|...+.+++| ++++.++++++ ++.+++|+.....
T Consensus 70 ~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~~~~~~-~~~i~~~~~~~~~--------------- 131 (299)
T d1nr0a2 70 F-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV-SADGDIAVAAC-YKHIAIYSHGKLT--------------- 131 (299)
T ss_dssp E-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE-CTTSSCEEEEE-SSEEEEEETTEEE---------------
T ss_pred e-cccceeeEEEeccCCcccccccccccccccccccccc-ccccccccccc-ccccccccccccc---------------
Confidence 4 56678999999987652 3344567889999999 88888777665 5689999954311
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
... ....+.+++|++++..+++++.++.+.+|+....... ......|...|++++|++
T Consensus 132 -~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~-------------------~~~~~~~~~~i~~~~~~~ 189 (299)
T d1nr0a2 132 -EVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS-------------------EVKTIVHPAEITSVAFSN 189 (299)
T ss_dssp -EEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE-------------------EEEEEECSSCEEEEEECT
T ss_pred -ccc--ccccccccccccccccccccccccccccccccccccc-------------------cccccccccccccccccc
Confidence 111 2334678999999988877777888888776432100 123346899999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcee---EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPL---AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l---~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
++ .+|++++.||.|++||+.++..+ ..+.+|.. .|++++|+ |++.+|++++ .||.|+|||+.++
T Consensus 190 ~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s----~~~~~l~sgs-~dg~i~iwd~~~~------ 256 (299)
T d1nr0a2 190 NG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVACVSWS----PDNVRLATGS-LDNSVIVWNMNKP------ 256 (299)
T ss_dssp TS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEEEETTCT------
T ss_pred cc-cccccccccccccccccccccccccccccccccc-cccccccc----ccccceEEEc-CCCEEEEEECCCC------
Confidence 98 89999999999999999887554 45667887 99999999 9999999977 9999999999876
Q ss_pred CCcccccEEEEEe--ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 464 SDIESWKCTQTLE--LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 464 ~~~~~~~~l~tl~--~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.....+. .|... ....++ .+++.+|++++.|+.|++||+.+
T Consensus 257 ------~~~~~~~~~~~~~~--------~v~~~~-~~~~~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 257 ------SDHPIIIKGAHAMS--------SVNSVI-WLNETTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp ------TSCCEEETTSSTTS--------CEEEEE-EEETTEEEEEETTSCEEEEECCC
T ss_pred ------CcceEEEecCCCCC--------cEEEEE-ECCCCEEEEEeCCCEEEEEeccC
Confidence 2222222 22211 112344 45678999999999999999853
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8e-24 Score=240.95 Aligned_cols=268 Identities=18% Similarity=0.259 Sum_probs=206.1
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+.+.+..|+||+.||+|++||+. .++++..+.+|.+.|.+++|+++ +|++
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd~~----------------------------~~~~~~~~~~h~~~V~~v~~~~~--~l~s 72 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWSAV----------------------------TGKCLRTLVGHTGGVWSSQMRDN--IIIS 72 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETT----------------------------TCCEEEECCCCSSCEEEEEEETT--EEEE
T ss_pred EEECCCEEEEEeCCCeEEEEECC----------------------------CCCEEEEEeCCCCCEEEEEeCCC--cccc
Confidence 45667899999999999999944 12456778899999999999864 9999
Q ss_pred EEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.|+.+++|+..... ......+...+....+ ....++.+..|++|.+|+..++. .......
T Consensus 73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~--------------~~~~~~~ 135 (342)
T d2ovrb2 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQ--------------CLHVLMG 135 (342)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCC--------------EEEEEEC
T ss_pred ceecccccccccccccceecccccceeEeeeec---ccccccccccceeEEEeeccccc--------------ceeeeec
Confidence 9999999999998875 3444555666666655 45688899999999999999876 1222222
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
... ....+......++.++.++.+..|+..... .+..+.+|...+..+.+ ++ .+|
T Consensus 136 ~~~--~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~--~~-~~l 190 (342)
T d2ovrb2 136 HVA--AVRCVQYDGRRVVSGAYDFMVKVWDPETET--------------------CLHTLQGHTNRVYSLQF--DG-IHV 190 (342)
T ss_dssp CSS--CEEEEEECSSCEEEEETTSCEEEEEGGGTE--------------------EEEEECCCSSCEEEEEE--CS-SEE
T ss_pred ccc--cceeeccccceeeeecCCCeEEEeecccce--------------------eeEEEcCcccccccccC--CC-CEE
Confidence 222 233445556667777777777777763321 15667778877776665 45 799
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
++|+.||+|++||++.++++..+.+|.. .|.++.|+ +++|++++ .|+.|++||+... +..
T Consensus 191 ~s~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~s~s-~d~~i~iwd~~~~------------~~~ 250 (342)
T d2ovrb2 191 VSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELK------DNILVSGN-ADSTVKIWDIKTG------------QCL 250 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEE------TTEEEEEE-TTSCEEEEETTTC------------CEE
T ss_pred EEEeCCCeEEEeecccceeeeEeccccc-ceeEEecC------CCEEEEEc-CCCEEEEEecccc------------ccc
Confidence 9999999999999999999999999987 89988886 46888866 9999999999887 777
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..+..+..... ...+++.++.++++|+.||.|++||+.+|+
T Consensus 251 ~~~~~~~~~~~--------~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 251 QTLQGPNKHQS--------AVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EEECSTTSCSS--------CEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred ccccccceeee--------ceeecccCCCeeEEEcCCCEEEEEECCCCC
Confidence 77766543322 246666778999999999999999998875
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-23 Score=233.85 Aligned_cols=274 Identities=17% Similarity=0.230 Sum_probs=205.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.+++..|++|+.||+|++||+. .++++..+.+|.+.|++++| ++++|
T Consensus 19 ~c~~~d~~~l~sgs~Dg~i~vWd~~----------------------------~~~~~~~l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 19 YCLQYDDQKIVSGLRDNTIKIWDKN----------------------------TLECKRILTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESS----------------------------SCCEEEEECCCSSCEEEEEC--CSSEE
T ss_pred EEEEEcCCEEEEEeCCCeEEEEECC----------------------------CCcEEEEEecCCCCEeeeec--cccee
Confidence 3456778999999999999999943 12456788899999999876 78999
Q ss_pred EEEEcCCeEEEEECCCCceEE-eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITALRSL-LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~-l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|++|++..+.... ...+..... .+ ......++++..++.+++||+..... .......
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 134 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HL-RFNNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVL 134 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEE--EE-ECCTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEE
T ss_pred ecccccccccccccccccccccccccccccc--cc-cccccceeecccccceeEeecccccc-----------ccccccc
Confidence 999999999999999985443 333333332 33 34667899999999999999987652 2234445
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..+...+..+.+.. ..+++.+.++.+..|+.... + .+..+.+|...|..+.+++ .
T Consensus 135 ~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~-~-------------------~~~~~~~~~~~v~~~~~~~---~ 189 (293)
T d1p22a2 135 VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC-E-------------------FVRTLNGHKRGIACLQYRD---R 189 (293)
T ss_dssp CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC-C-------------------EEEEEECCSSCEEEEEEET---T
T ss_pred cccccccccceecc--cccccccCCCceeeecCCCC-c-------------------EEEEEcccccccccccCCC---C
Confidence 55666666666554 45666666666666665332 1 1566778888999888864 6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+|++++.||+|+|||++++..+..+.+|.. .|.. ++ +++.+|++++ .||.|+|||+..... ........
T Consensus 190 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~--~~----~~~~~l~sg~-~dg~i~iwd~~~~~~---~~~~~~~~ 258 (293)
T d1p22a2 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRC--IR----FDNKRIVSGA-YDGKIKVWDLVAALD---PRAPAGTL 258 (293)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEE--EE----CCSSEEEEEE-TTSCEEEEEHHHHTS---TTSCTTTT
T ss_pred eEEEecCCCEEEEEecccceeeeeecccce-eeee--cc----ccceEEEEEc-CCCEEEEEECCCCcc---ccccCCce
Confidence 899999999999999999999999999986 6665 44 5678888876 999999999865411 11223347
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+++++.+|.+.+.. ++| ++.+|++++.||+|+|||
T Consensus 259 ~~~~~~~H~~~V~~---------v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 259 CLRTLVEHSGRVFR---------LQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEECCCSSCCCC---------EEE--CSSCEEECCSSSEEEEEC
T ss_pred eeEEecCCCCCEEE---------EEE--cCCEEEEEecCCEEEEeC
Confidence 88999999877644 566 678899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.1e-24 Score=243.26 Aligned_cols=259 Identities=11% Similarity=0.066 Sum_probs=181.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
++++++.+|.+.|++++|++ |++|+.||+|++||+.++ ..+|...|.+++| ++ +..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~-~~-~~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDN-SK-AQEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----ECCCCSCEEEEEC-CS-TTCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----CCCCCCCEEEEEe-cC-CCeEEEEeecccccccc
Confidence 67899999999999999987 999999999999998764 4689999999999 55 45689999999999999
Q ss_pred CCCCCCCCCCcc---c-ccceEE-----EEEEecCC--------CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 287 ITEGPDEEDKPQ---I-LGKIVV-----AIQILADG--------DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 287 l~tg~~~~~~~~---~-~~~~i~-----~l~~~~~~--------~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
+...+....... . .+..+. .+...... .......++++++..+++++.++..+.+|......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~- 152 (287)
T d1pgua2 74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE- 152 (287)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-
T ss_pred ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc-
Confidence 875431110000 0 000000 00000000 01122345566666666666655444333321110
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEE
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTF 428 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~f 428 (1395)
........|.+.|++++|+|++ .+|++|+.||.|++||+.++..+. .+.+|.+ .|.+++|
T Consensus 153 -----------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~ 213 (287)
T d1pgua2 153 -----------------VSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISW 213 (287)
T ss_dssp -----------------EEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEE
T ss_pred -----------------eeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccccccccccccc-ccceeee
Confidence 0022234578899999999998 899999999999999999987665 4678887 9999999
Q ss_pred eecC------CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 429 LIGP------HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 429 s~~~------~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
+|.. ..++.+|++++ .|++|+|||+.++ .+++..+.+|...+. .+.|++++ .
T Consensus 214 ~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw~~~~~-----------~~~~~~~~~h~~~V~---------~v~~~~~~-~ 271 (287)
T d1pgua2 214 KPAEKGANEEEIEEDLVATGS-LDTNIFIYSVKRP-----------MKIIKALNAHKDGVN---------NLLWETPS-T 271 (287)
T ss_dssp CCCC------CCSCCEEEEEE-TTSCEEEEESSCT-----------TCCEEETTSSTTCEE---------EEEEEETT-E
T ss_pred cccccccccccCCCCeeEeec-CCCeEEEEECCCC-----------CeEEEEeCCCCCCeE---------EEEECCCC-E
Confidence 8321 13456788766 9999999999764 156677777876654 47888886 5
Q ss_pred EEEEeCCCeEEEEEc
Q 039790 503 LLANAKKNAIYAIHM 517 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl 517 (1395)
|++++.|+.|++|++
T Consensus 272 l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 272 LVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEEECCCeEEEEEE
Confidence 788999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2.3e-23 Score=236.24 Aligned_cols=272 Identities=8% Similarity=0.001 Sum_probs=182.1
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+....+|.+.|++++|+|++++||+|+.||+|+|||+..+ ......+|.+.|.+++|++.++.+|++|+.||+|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 45667889999999999999999999999999999999765 23344579999999999555677999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+|++..+.. .......+........+.++...+++++.++.+.+|+..........
T Consensus 83 ~w~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~----------- 138 (342)
T d1yfqa_ 83 KVDLIGSPS-------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA----------- 138 (342)
T ss_dssp EECSSSSSS-------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE-----------
T ss_pred eeecccccc-------------cccccccccccccccccccccccccccccccccceeeccccccceee-----------
Confidence 999988762 11122223333344556666667777777777777765432211000
Q ss_pred ccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE---EecCCCCCCeeEEEEeecCCCCCcE
Q 039790 364 ELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA---VLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 364 ~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~---tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...... +......+.+.+.+ ..+++++.||.|++||++.+.... ....+.. .+.++.+. ..++..
T Consensus 139 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~ 208 (342)
T d1yfqa_ 139 -----VKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALL---PKEQEG 208 (342)
T ss_dssp -----EEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEEC---SGGGCE
T ss_pred -----ecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeeccccc-ceeeeEee---cCCCCE
Confidence 111111 22234556677776 799999999999999998765432 2333433 56666665 145566
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++++ .||.+.+|++......... .....+..+..........+....++|+|++.+|++|+.||.|++||+.
T Consensus 209 ~~~~s-~dg~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 209 YACSS-IDGRVAVEFFDDQGDDYNS------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEE-TTSEEEEEECCTTCCSTTC------TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEeec-CCCeEEEEEecCCcceeec------cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence 66655 9999999998765211111 1111122111111111222334579999999999999999999999998
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
.+
T Consensus 282 ~~ 283 (342)
T d1yfqa_ 282 TR 283 (342)
T ss_dssp TT
T ss_pred CC
Confidence 74
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=6.9e-23 Score=243.06 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=185.9
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEe---e---CCCCEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFF---A---EDVHLLASA 276 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~---s---~dg~~LaSg 276 (1395)
...++|.+.|++++++ +++|++|+.||+|+|||..+. .......|...+..+.+. . .++.+++++
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 4567999999999875 579999999999999998764 123334455554444331 1 233578899
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEec--CCCCCccEEEEeCCC-----CeEEEEEeCCeEEEEEcCCCCcc
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHK-----QEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~-----~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
+.||.|++|++......... ......... .+...+..++|.++. ..+++++.++.+.+|+.......
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKV------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCE------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred eCCCcEEEEEccCCCceeee------eccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 99999999998876522111 000111111 123345567777654 35566667788888876543221
Q ss_pred c-cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe------cCCCCCC
Q 039790 350 E-RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL------RPYDGHP 422 (1395)
Q Consensus 350 ~-~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl------~~h~~~~ 422 (1395)
. .+..... ..............+...+++++|+|++ +||+|+.||+|+|||+.+++++..+ .+|.. +
T Consensus 160 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~ 233 (393)
T d1sq9a_ 160 SNSLTLNWS---PTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-S 233 (393)
T ss_dssp HHHTTTCCC---CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-C
T ss_pred cceeeeeec---cceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccc-e
Confidence 1 0000000 0000011122233466779999999986 8999999999999999999887755 46776 9
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCC---eEEEEECCCCCCCCCCCCcccccEEEEEe-------------ccCccccccc
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNR---ELKIWASAEEEGWLLPSDIESWKCTQTLE-------------LKSSAELRLE 486 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-------------~h~~~i~~~~ 486 (1395)
|++|+|+ |||++|++++ .|+ .|+|||+.++ .++.++. +|...+
T Consensus 234 V~~l~~s----pdg~~l~sgs-~D~t~~~i~lwd~~~g------------~~~~~l~~~~~~~~~~~~~~gH~~~V---- 292 (393)
T d1sq9a_ 234 IRSVKFS----PQGSLLAIAH-DSNSFGCITLYETEFG------------ERIGSLSVPTHSSQASLGEFAHSSWV---- 292 (393)
T ss_dssp EEEEEEC----SSTTEEEEEE-EETTEEEEEEEETTTC------------CEEEEECBC--------CCBSBSSCE----
T ss_pred EEEcccc----cccceeeeec-CCCCcceeeecccccc------------eeeeeeccccccccceeeeecccCce----
Confidence 9999999 9999999977 776 5999999988 7777665 344333
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..++|++||.+|++++.|++|+|||+.+|.
T Consensus 293 -----~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 293 -----MSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp -----EEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred -----eeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence 469999999999999999999999998864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.4e-23 Score=244.80 Aligned_cols=288 Identities=10% Similarity=0.094 Sum_probs=189.0
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE------e-cCCC
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI------A-VNRN 229 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~------S-pdg~ 229 (1395)
.+..|+|+|.|++||+|+....+... ..........|...+..+.+ + .++.
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNEN----------------------PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTCC----------------------GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred eCCEEEEEECCCeEEEEECCCCCCCc----------------------ccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence 34789999999999999944221110 00011111122222222111 1 1345
Q ss_pred EEEEEEcCCeEEEEECCCCc----eE-------EeccCCCCeEEEEEeeCC-----CCEEEEEECCCcEEEEECCCCCCC
Q 039790 230 YICYGLKLGNIRILNIITAL----RS-------LLRGHTQRVTDMAFFAED-----VHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~----~~-------~l~~H~~~V~slaf~s~d-----g~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
++++++.||.|++|++.... .. ....+...++.++| ..+ +.++++++.||+|++|++......
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW-GASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE-ECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEE-ecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 78899999999999986531 11 11235567888888 443 468999999999999998754311
Q ss_pred CC-Cccccc---ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 294 ED-KPQILG---KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 294 ~~-~~~~~~---~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.. ...... ...........+...+.+++|++++ ++++|.. +.|.+|+.. .++.. .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~-~~~~~-------------~~~~~ 223 (393)
T d1sq9a_ 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS-TLRPL-------------YNFES 223 (393)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT-TTEEE-------------EEEEC
T ss_pred cceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeec-ccccc-------------ccccc
Confidence 10 000001 1111222223455668899999987 4455554 455555543 22210 01111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCc---EEEEeCCCCceeEEec-------------CCCCCCeeEEEEeecC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGT---VKIWDDRKSTPLAVLR-------------PYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~---IrIWDl~sg~~l~tl~-------------~h~~~~V~sV~fs~~~ 432 (1395)
...+.+|...|++++|+|+| ++|++|+.|++ |+|||+.++.++.++. +|.+ .|++|+|+
T Consensus 224 ~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fs--- 298 (393)
T d1sq9a_ 224 QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFN--- 298 (393)
T ss_dssp CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEEC---
T ss_pred ccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccC---
Confidence 33456799999999999998 89999999975 9999999999888875 7987 99999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
||+++|+++| .|++|+|||+.++ +++++|++|...+.. ....++|+++|..+++++
T Consensus 299 -pd~~~l~S~s-~D~~v~vWd~~~g------------~~~~~l~gH~~~v~~-----~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 299 -DSGETLCSAG-WDGKLRFWDVKTK------------ERITTLNMHCDDIEI-----EEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp -SSSSEEEEEE-TTSEEEEEETTTT------------EEEEEEECCGGGCSS-----GGGCCCBCTTSCBCSSCC
T ss_pred -CCCCeeEEEC-CCCEEEEEECCCC------------CEEEEECCcCCcccC-----CccEEEECCCCCEEEEcc
Confidence 9999999977 9999999999998 999999999876643 122366778887766443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=3.5e-22 Score=226.36 Aligned_cols=287 Identities=14% Similarity=0.096 Sum_probs=203.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~ 230 (1395)
+.++|.+..|++++.||+||+||+.... ....+....+|.+.|.+++|+++ +.+
T Consensus 17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-------------------------~~~~~~~~~~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 17 IKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------KNVDLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------TEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCC-------------------------cceEEEEecCCCCCEEEEEEeCCCCCE
Confidence 5667777999999999999999943110 00112233368999999999986 568
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||.|++|++..+. ......+...+....+...+...+++++.|+++++||++.+.... .....
T Consensus 72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~----------~~~~~ 141 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV----------IAVKN 141 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC----------EEEEE
T ss_pred EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccce----------eeecc
Confidence 9999999999999998874 444444444444444437788999999999999999998654211 11111
Q ss_pred ecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 310 LAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 310 ~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
... .......+.+.+.+..++.++.++.+..|+....... ........+...+.++.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 204 (342)
T d1yfqa_ 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-----------------NGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-----------------CCEEEECSCSSCEEEEEECSG
T ss_pred cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc-----------------ceeeeecccccceeeeEeecC
Confidence 111 2233446677888888888888888888876443221 112334445666777777766
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCce------eEE---------ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTP------LAV---------LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~------l~t---------l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
+...+++++.||.+.+|++..... ... ..+|.. .|++|+|+ |++.+|+++| .||.|+||
T Consensus 205 ~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s----p~~~~lasg~-~Dg~v~vW 278 (342)
T d1yfqa_ 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY-PVNSIEFS----PRHKFLYTAG-SDGIISCW 278 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC-CEEEEEEC----TTTCCEEEEE-TTSCEEEE
T ss_pred CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccc-cceeEEec----CCccEEEEEC-CCCEEEEE
Confidence 658999999999999999764321 111 124544 78999999 9999999977 99999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|+.++ +++.++..+... .+++|+++|.+|++++.|+.+++|..-
T Consensus 279 D~~~~------------~~l~~~~~~~~~----------~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 279 NLQTR------------KKIKNFAKFNED----------SVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ETTTT------------EEEEECCCCSSS----------EEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ECCCC------------cEEEEecCCCCC----------EEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 99988 888877543321 258899999999999999988888653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2.4e-22 Score=232.07 Aligned_cols=324 Identities=10% Similarity=0.045 Sum_probs=223.0
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcc
Q 039790 222 RQIAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 222 va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~ 298 (1395)
-.||| ||+++|+++. |.|+|||+.++....+ +|...|.+++| ++||++|++++.|. .|++||+.++.
T Consensus 8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~-~~~~~v~~~~~-spDg~~l~~~~~~~g~~v~v~d~~~~~------- 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV-PEPLRIRYVRR-GGDTKVAFIHGTREGDFLGIYDYRTGK------- 77 (360)
T ss_dssp EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC-SCCSCEEEEEE-CSSSEEEEEEEETTEEEEEEEETTTCC-------
T ss_pred ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc-cCCCCEEEEEE-CCCCCEEEEEEcCCCCEEEEEECCCCc-------
Confidence 46999 9999999875 7999999999876665 69999999999 99999998877653 79999999876
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
...+..+...+.+++|+|++.++++++.++.+..|+...... ...+..|...
T Consensus 78 --------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 129 (360)
T d1k32a3 78 --------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--------------------TVIERSREAM 129 (360)
T ss_dssp --------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------------EEEEECSSSC
T ss_pred --------EEEeeCCCceEEeeeecccccccceeccccccccccccccce--------------------eeeeeccccc
Confidence 234556788889999999999888888888888887643221 4566778899
Q ss_pred eEEEEEecCCCcEEEEEe----------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 379 ITELSMCQWLTTRLASAS----------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs----------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+.+++|+|+| .+|+.++ .++.+++||+.+++...... |.. .+.+++|+ |||++|++++ .|+.
T Consensus 130 ~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~-~~~~~~~s----pdg~~l~~~s-~~~~ 201 (360)
T d1k32a3 130 ITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENS-HDYAPAFD----ADSKNLYYLS-YRSL 201 (360)
T ss_dssp CCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSS-BEEEEEEC----TTSCEEEEEE-SCCC
T ss_pred ccchhhccce-eeeeeeccccccceeeccccceeeeccccCceeeecc-ccc-cccccccc----CCCCEEEEEe-CCCc
Confidence 9999999999 7777544 34569999999887655444 444 78999999 9999999977 8999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe---EEEEEcCCCCCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA---IYAIHMDYGPNPAS 525 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~---I~iWdl~~g~~~~~ 525 (1395)
+++||...... ..........+..+..... .+.+++++..++++..+.. .++|.+....
T Consensus 202 ~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 263 (360)
T d1k32a3 202 DPSPDRVVLNF-----SFEVVSKPFVIPLIPGSPN---------PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP---- 263 (360)
T ss_dssp CCEECSSSSCE-----ECCSCBEEEEEESSTTCCC---------GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC----
T ss_pred eEcccccccce-----eeccccceEEEecccCccc---------cceECCCcCcccccceeecccccceeecccCc----
Confidence 99999865410 0011123334444443322 1445677766655543321 2344443211
Q ss_pred cceeeeeeeeccccEEEEecCCCCc----CcCCCCeEEEEEcCCCceeeecccceEEecCCCCC--eecccCCCceEEEe
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDA----SPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN--AELEKTDSNATRAF 599 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~----~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iW 599 (1395)
.....+.....+...+.+....... ..+.++.|++||+.++++..+.. ...++.+++|+ +++.. +++.+++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~v~~~~~SpDG~~l~~~~-~Dg~i~v~ 341 (360)
T d1k32a3 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-NLTDLRLSADRKTVMVRK-DDGKIYTF 341 (360)
T ss_dssp BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE-EEEEEEECTTSCEEEEEE-TTSCEEEE
T ss_pred CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecC-CcCEEEECCCCCEEEEEE-CCCeEEEE
Confidence 1122232222222222222211011 13568899999999998765433 24466777776 66655 45778899
Q ss_pred ecCCCCcceeec
Q 039790 600 DVANPDGSASLE 611 (1395)
Q Consensus 600 D~~tg~~~~~l~ 611 (1395)
|+.+++...+++
T Consensus 342 d~~~~~~~~~~~ 353 (360)
T d1k32a3 342 PLEKPEDERTVE 353 (360)
T ss_dssp ESSCTTSCEECC
T ss_pred ECCCCCcceEEE
Confidence 999999877776
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=1.4e-21 Score=225.45 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=179.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLG--NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG--~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+|...|.+++|+|||++|++++.+. .|++||..++....+..|...|.+++| ++++++|++++.++.+++|++.++.
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGV-DRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEE-CTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeee-cccccccceeccccccccccccccc
Confidence 6889999999999999999877553 799999999999999999999999999 9999999999999999999999877
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----------eEEEEEcCCCCccccccCCCCCccC
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----------RILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----------~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.......+...+.+++|+|++..++.+...+ .+.+|+. ..+.
T Consensus 119 --------------~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~-~~~~------------- 170 (360)
T d1k32a3 119 --------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM-EGRK------------- 170 (360)
T ss_dssp --------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET-TTTE-------------
T ss_pred --------------eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc-ccCc-------------
Confidence 4456667778888999999999887665432 1333332 2211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-------eeEEecCCCC--------------
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-------PLAVLRPYDG-------------- 420 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-------~l~tl~~h~~-------------- 420 (1395)
...+..|...+..++|+|+| ++|++++.|+.+++||..... ....+..|..
T Consensus 171 -------~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (360)
T d1k32a3 171 -------IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242 (360)
T ss_dssp -------EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred -------eeeecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcc
Confidence 33445577889999999998 899999999999999975432 1222221111
Q ss_pred ---------------------CCeeEEEEeecCCCCCc-------------EEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 421 ---------------------HPVNCVTFLIGPHPQHI-------------VLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 421 ---------------------~~V~sV~fs~~~~pdg~-------------~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
.....+... +++. ++++ ++.++.|++||+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~--------- 308 (360)
T d1k32a3 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPL----ESSILIYSVPVHGEFAAYYQG-APEKGVLLKYDVKTR--------- 308 (360)
T ss_dssp CCCCCCCTTGGGGCEECSCCCBCEEEEEEC----SSEEEEEECCCCCSHHHHHHC-CCCCEEEEEEETTTC---------
T ss_pred cccceeecccccceeecccCcCceeEeeec----CCCceEEEEEecCCCeeEEEe-cCCCCEEEEEECCCC---------
Confidence 011222222 2221 2223 336789999999876
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
+.. .+.. .+ ..++|++||++|++++.||.|++|+++.|+.+
T Consensus 309 ---~~~-~~~~---~v---------~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 309 ---KVT-EVKN---NL---------TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp ---CEE-EEEE---EE---------EEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred ---eEE-EecC---Cc---------CEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 332 2221 12 25899999999999999999999999987653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=2.1e-19 Score=215.52 Aligned_cols=295 Identities=11% Similarity=0.037 Sum_probs=194.3
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCe
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN 239 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~ 239 (1395)
.+++.+.||.|++||..+ ++.+.++..| ..+.+++|||||++|++++.||+
T Consensus 34 ~~V~~~~dg~v~vwD~~t----------------------------~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~ 84 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS----------------------------KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84 (426)
T ss_dssp EEEEETTTTEEEEEETTT----------------------------CSEEEEEECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred EEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence 467888999999999541 2445566655 46899999999999999999999
Q ss_pred EEEEECCCCce------EEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 240 IRILNIITALR------SLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 240 IrIWd~~~~~~------~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|++||+.++.. ....+|.+.+.+++| ++||++| +++..++++++||..++. .+.....
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~-spDG~~l~v~~~~~~~v~i~d~~~~~--------------~~~~~~~ 149 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLE--------------PKQIVST 149 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCC--------------EEEEEEC
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceEEeeee-cCCCCEEEEeecCCCeEEEEcCCccc--------------eeEEeec
Confidence 99999998742 223467777888888 8999986 555689999999999887 3333333
Q ss_pred CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
+...+..+.+.+++...+++.. ++..+.++....+....+... +.........++...+..+.|+|++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 221 (426)
T d1hzua2 150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK--------DIDNLTVTSIGAAPFLADGGWDSSHRYF 221 (426)
T ss_dssp CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS--------SSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred cCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec--------cccceeeEEeccCCccEeeeECCCCcEE
Confidence 3333333444444443322222 222222222221111000000 0001123334578889999999999545
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+++...+..+.+||..+++.+..+..... .....+.|... ..+.......+.|+.+.+|+..... .....|+
T Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~v~~~~~~~~~-----~~~~~~~ 294 (426)
T d1hzua2 222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP--KYGPVWSTSHLGDGSISLIGTDPKN-----HPQYAWK 294 (426)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET--TTEEEEEEECTTTCEEEEEECCTTT-----CTTTBTS
T ss_pred EeeeecccceeeeecccccEEEEeccCCcccccceeeeecC--CCCceEEeccCCCceEEEeeccccc-----cccccce
Confidence 55555677899999999998887763321 13445555410 2233444445578999999987641 1224578
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEE-------EeCCCeEEEEEcCCCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-------NAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-------gs~Dg~I~iWdl~~g~~ 522 (1395)
+..++.+|...+.. ++|+|||.+|++ ++.|++|+|||+.+++.
T Consensus 295 ~~~~l~g~~~~v~~---------v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~ 344 (426)
T d1hzua2 295 KVAELQGQGGGSLF---------IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344 (426)
T ss_dssp EEEEEECSSSCCCC---------EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EeEEEecCCCceeE---------EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence 99999999876544 899999999994 55688999999988763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.2e-19 Score=218.54 Aligned_cols=359 Identities=9% Similarity=-0.053 Sum_probs=230.7
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCe
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN 239 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~ 239 (1395)
.+++.+.||.|++||.. .++.+..+..| ..+..++|||||++|++++.||.
T Consensus 34 ~~v~~~d~g~v~v~D~~----------------------------t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~ 84 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGS----------------------------TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84 (432)
T ss_dssp EEEEETTTTEEEEEETT----------------------------TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEEEcCCCEEEEEECC----------------------------CCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCC
Confidence 35899999999999943 12345556555 46999999999999999999999
Q ss_pred EEEEECCCCc------eEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 240 IRILNIITAL------RSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 240 IrIWd~~~~~------~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|++||+.++. +....+|.+.+.+..| ++||++| ++++.+++|+|||..+++........... +. .....
T Consensus 85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~-SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~-~~--~~~~~ 160 (432)
T d1qksa2 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YD--EQEYH 160 (432)
T ss_dssp EEEEETTSSSCCEEEEEECCSEEEEEEECCST-TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TT--TCCEE
T ss_pred EEEEEeeCCCceEEEEEecCCCCCCeEEeccc-CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc-cc--ceecc
Confidence 9999998863 1223456677777777 8899975 78889999999999988721110000000 00 00001
Q ss_pred CCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.......+.+++++..++++..+ +.+..|+....... .+..+ .+...+.+++|+|+| ++
T Consensus 161 ~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~------------------~~~~i-~~g~~~~~~~~spdg-~~ 220 (432)
T d1qksa2 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL------------------KTTEI-SAERFLHDGGLDGSH-RY 220 (432)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE------------------EEEEE-ECCSSEEEEEECTTS-CE
T ss_pred CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc------------------eEEEE-cccCccccceECCCC-CE
Confidence 23344567889998877766654 55666654322110 01222 356788999999999 55
Q ss_pred EEEE-eCCCcEEEEeCCCCceeEEecC-----CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 392 LASA-SLDGTVKIWDDRKSTPLAVLRP-----YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 392 LaSg-s~Dg~IrIWDl~sg~~l~tl~~-----h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++++ ..++.|.+||..+++.+..+.. |.. ......+. ..+....+....|+.|.+|+....
T Consensus 221 ~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~-~~~~~~~~----~~g~~~~~~~lg~~~v~~~~~~~~-------- 287 (432)
T d1qksa2 221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG-RGANFVHP----TFGPVWATSHMGDDSVALIGTDPE-------- 287 (432)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT-TCEEEEET----TTEEEEEEEBSSSSEEEEEECCTT--------
T ss_pred EEEeccccceEEEeecccceEEEEeccCccccccC-cccceecC----CCCceecccccCCceEEecccccc--------
Confidence 5554 4567899999999988877652 222 34444553 445555555446889999987654
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEec
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTG 545 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~ 545 (1395)
. +..+.. ......++++|..+++++.++.+++|......... .....+..+++
T Consensus 288 ----~----~~~~~~---------~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~----------~~~~sv~vpDg 340 (432)
T d1qksa2 288 ----G----HPDNAW---------KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA----------EISGSVAVFDI 340 (432)
T ss_dssp ----T----CTTTBT---------SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH----------HHHTCEEEEEG
T ss_pred ----c----cccccc---------EEEEEEEcCCCCeEEEEecCCccceeecccCCCCC----------CeeeEEEEEec
Confidence 1 111111 11246778889889999999999999876532110 01122333566
Q ss_pred CCCCcCcCCCCeEEEEEcCCCceeeecccceEEecCCCCC--eecc----cCCCceEEEeecCCCCcceeecc
Q 039790 546 TTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN--AELE----KTDSNATRAFDVANPDGSASLES 612 (1395)
Q Consensus 546 ~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~--l~~~----~sd~~v~~iWD~~tg~~~~~l~g 612 (1395)
.. -...+.|+.+++|++.++....-+.....++.|++|+ +.++ +.+.+.+++||..|++..+.+.+
T Consensus 341 ~~-la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 341 KA-MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp GG-CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred hh-hcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence 54 2224678999999987653322233345577788887 3212 23446667999999998887773
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=9.5e-20 Score=204.62 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=168.1
Q ss_pred EEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccC-c----ccccceeeeeCCCCCEEEEEEecCCCEEEEEE
Q 039790 161 TVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQP-Q----LEVTPITKYISDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 161 Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~-~----~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs 235 (1395)
|++|+.||+|++|+... +. -.....|+.+.+...+.... . +..-.+.. ......+.++.+++++.++++++
T Consensus 24 l~sgs~Dg~v~~Wd~~~--~~-~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSS--MH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK-HEFGSQPKVASANNDGFTAVLTN 99 (287)
T ss_dssp TEEEETTSCEEETTTTE--EE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE-EECSSCEEEEEECSSSEEEEEET
T ss_pred EEEEeCCCeEEEEECCC--CC-CCCCCCEEEEEecCCCeEEEEeeccccccccccc-cccccceeeeeeccCCceEEEee
Confidence 99999999999999431 10 02233455555543322211 0 00011111 12335677788888877666654
Q ss_pred cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC-cEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 236 KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-RFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
++.+.+|+..++.......+...+.+ + .+++..++.++.|+ .|++|++.... ........+.
T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~v~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~ 162 (287)
T d1pgua2 100 -DDDLLILQSFTGDIIKSVRLNSPGSA--V-SLSQNYVAVGLEEGNTIQVFKLSDLE-------------VSFDLKTPLR 162 (287)
T ss_dssp -TSEEEEEETTTCCEEEEEECSSCEEE--E-EECSSEEEEEETTTSCEEEEETTEEE-------------EEEECSSCCS
T ss_pred -cccceeeeccceeeeeeccccceeee--e-eccCcceeeeccccceeeeeeccccc-------------eeeeeeeccC
Confidence 55677888877753333333444444 4 44677777777765 79999987543 1223344566
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC------
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL------ 388 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg------ 388 (1395)
..+++++|+|++.++++++.++.+.+|+....... ...+.+|...|++++|+|.+
T Consensus 163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-------------------~~~~~~h~~~v~~~~~~p~~~~~~~~ 223 (287)
T d1pgua2 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-------------------TSRWAFRTSKINAISWKPAEKGANEE 223 (287)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------------ECCSCCCSSCEEEEEECCCC------
T ss_pred CceeEEEeccCccccccccccccccceeecccccc-------------------cccccccccccceeeecccccccccc
Confidence 78899999999998888888888888876432110 12345799999999998753
Q ss_pred ---CcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 389 ---TTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 389 ---~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
..+|++|+.|++|+|||+++ ++.+..+.+|.+ .|++|+|+ +++ .|+++| .|++|+|||+
T Consensus 224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~----~~~-~l~s~g-~D~~v~iW~i 286 (287)
T d1pgua2 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWE----TPS-TLVSSG-ADACIKRWNV 286 (287)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEE----ETT-EEEEEE-TTSCEEEEEE
T ss_pred cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEEC----CCC-EEEEEE-CCCeEEEEEE
Confidence 25899999999999999977 567888889997 99999998 776 578877 8999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=1.4e-17 Score=186.49 Aligned_cols=266 Identities=8% Similarity=0.077 Sum_probs=193.2
Q ss_pred EEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE-EEEcCCe
Q 039790 161 TVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC-YGLKLGN 239 (1395)
Q Consensus 161 Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La-sGs~DG~ 239 (1395)
.++.+.|++|++||+.+ ++ .+.++.. ...+.+++|+|||++|+ +++.++.
T Consensus 5 yV~~~~~~~v~v~D~~t--~~--------------------------~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~ 55 (301)
T d1l0qa2 5 YIANSESDNISVIDVTS--NK--------------------------VTATIPV-GSNPMGAVISPDGTKVYVANAHSND 55 (301)
T ss_dssp EEEETTTTEEEEEETTT--TE--------------------------EEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTE
T ss_pred EEEECCCCEEEEEECCC--Ce--------------------------EEEEEEC-CCCceEEEEeCCCCEEEEEECCCCE
Confidence 35677889999999541 21 2222222 24578899999999885 5667899
Q ss_pred EEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCE-EEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCc
Q 039790 240 IRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHL-LASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317 (1395)
Q Consensus 240 IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~-LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v 317 (1395)
|++||+.++. +..+..|. .+..++| .+++.+ ++++..++.+++|+..+++ ....... ....
T Consensus 56 i~v~d~~t~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-~~~~ 118 (301)
T d1l0qa2 56 VSIIDTATNNVIATVPAGS-SPQGVAV-SPDGKQVYVTNMASSTLSVIDTTSNT--------------VAGTVKT-GKSP 118 (301)
T ss_dssp EEEEETTTTEEEEEEECSS-SEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTE--------------EEEEEEC-SSSE
T ss_pred EEEEECCCCceeeeeeccc-ccccccc-ccccccccccccccceeeecccccce--------------eeeeccc-cccc
Confidence 9999999885 55666555 5789999 777775 4556677889999998876 2333333 3445
Q ss_pred cEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-
Q 039790 318 PRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS- 396 (1395)
Q Consensus 318 ~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs- 396 (1395)
.+++|++++..+++++..+..+.++....... ...+. +...+.+++|++++ .++++++
T Consensus 119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 177 (301)
T d1l0qa2 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-------------------INTVS-VGRSPKGIAVTPDG-TKVYVANF 177 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------------EEEEE-CCSSEEEEEECTTS-SEEEEEET
T ss_pred eEEEeecCCCeeeeeeccccceeeeeccccce-------------------eeecc-cCCCceEEEeeccc-cceeeecc
Confidence 68999999999888887766666555433221 23333 45568999999998 5555555
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe--cCCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG--PLNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G--s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
.++.+.+|+.........+..+. .+..++|+ +++..+++++ ..+++|++||+.++ +++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~g~~~~v~~~~~~~~~v~v~D~~t~------------~~~~~ 239 (301)
T d1l0qa2 178 DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN----PEGTKAYVTNVDKYFNTVSMIDTGTN------------KITAR 239 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC----TTSSEEEEEEECSSCCEEEEEETTTT------------EEEEE
T ss_pred cccccccccccceeeeecccccC--Ccceeecc----ccccccccccccceeeeeeeeecCCC------------eEEEE
Confidence 45778889988888888877664 58899998 8998876654 34578999999988 88888
Q ss_pred EeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~ 521 (1395)
+..+... ..++|++||++| ++++.|+.|++||+.+++
T Consensus 240 ~~~~~~~----------~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 240 IPVGPDP----------AGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EECCSSE----------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EcCCCCE----------EEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 7754422 259999999976 678889999999998864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=1.2e-16 Score=178.86 Aligned_cols=225 Identities=9% Similarity=0.080 Sum_probs=169.8
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.|++|.|||+.++++.........+..++| ++||++| ++++.+++|++||+.+++ .+..+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~-spdG~~l~v~~~~~~~i~v~d~~t~~--------------~~~~~ 70 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVI-SPDGTKVYVANAHSNDVSIIDTATNN--------------VIATV 70 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE-CTTSSEEEEEEGGGTEEEEEETTTTE--------------EEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCCceEEEE-eCCCCEEEEEECCCCEEEEEECCCCc--------------eeeee
Confidence 3567899999999999864333334456889999 9999977 577789999999999876 23333
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..+. ....+.|++++..+++++.++..+.+|....+.. ...+. +...+.+++|++++..
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~dg~~ 129 (301)
T d1l0qa2 71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-------------------AGTVK-TGKSPLGLALSPDGKK 129 (301)
T ss_dssp ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------------EEEEE-CSSSEEEEEECTTSSE
T ss_pred eccc-cccccccccccccccccccccceeeeccccccee-------------------eeecc-ccccceEEEeecCCCe
Confidence 3333 4568999999999988888777666665443321 33333 5567889999999965
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+++++..++.+.+||..++..+..+..+. .+..+.|+ +++.++++++..++.+.+|+.... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------~ 191 (301)
T d1l0qa2 130 LYVTNNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVT----PDGTKVYVANFDSMSISVIDTVTN------------S 191 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCS--SEEEEEEC----TTSSEEEEEETTTTEEEEEETTTT------------E
T ss_pred eeeeeccccceeeeeccccceeeecccCC--CceEEEee----ccccceeeecccccccccccccce------------e
Confidence 66777789999999999999999988775 58999998 999999888866788889988776 6
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEe---CCCeEEEEEcCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA---KKNAIYAIHMDYG 520 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs---~Dg~I~iWdl~~g 520 (1395)
....+..+... ..++++++|..++.++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~~~----------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 192 VIDTVKVEAAP----------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp EEEEEECSSEE----------EEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred eeecccccCCc----------ceeeccccccccccccccceeeeeeeeecCCC
Confidence 66666654432 2478899999776554 3468999998775
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=6.5e-17 Score=193.45 Aligned_cols=338 Identities=10% Similarity=0.002 Sum_probs=207.0
Q ss_pred EEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 230 YICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
++++++.||.|+|||+.++. +..+..|. .+..++| ++||++|++++.||+|++||+.+++.. .+..+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vaf-SPDGk~l~~~~~d~~v~vwd~~t~~~~---------~~~~i~ 102 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRM-SASGRYLLVIGRDARIDMIDLWAKEPT---------KVAEIK 102 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCE---------EEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEE-CCCCCEEEEEeCCCCEEEEEccCCcee---------EEEEEe
Confidence 56778889999999999985 66777664 6999999 999999999999999999999988721 111222
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
....+...+.++.|+|+|+++++++..+..+.+|+...+.......... ... ......+.+....+.+++++
T Consensus 103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~i~~s~d~ 174 (426)
T d1hzua2 103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG------MTV--DTQTYHPEPRVAAIIASHEH 174 (426)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE------ECS--SSCCEESCCCEEEEEECSSS
T ss_pred CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC------CCc--cceeecCCCceeEEEECCCC
Confidence 2233444455677889999988887666666665544432210000000 000 00011244556677777877
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 389 TTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
..++++....+.+.+++...+..+. ...++.. .+..+.|+ |+++++++++..+..+.+||..++
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~g~~~~~a~~~~~~~~~~~~~~~---------- 239 (426)
T d1hzua2 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP-FLADGGWD----SSHRYFMTAANNSNKVAVIDSKDR---------- 239 (426)
T ss_dssp SEEEEEETTTTEEEEEECSSSSSCEEEEEECCS-SEEEEEEC----TTSCEEEEEETTCSEEEEEETTTT----------
T ss_pred CEEEEecCCCCeEEEEEeccccceeeEEeccCC-ccEeeeEC----CCCcEEEeeeecccceeeeecccc----------
Confidence 4444444455677777776664333 3334554 89999999 999999998878889999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEE-eCCCCEE--EEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEEE
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVAL-NRAGLFL--LANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILSL 543 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~-S~dg~~L--aSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils~ 543 (1395)
+++..+......... ....+ .+....+ ++.+.|+.+.+|+........ .....+..+.++. .+.+.
T Consensus 240 --~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~l~g~~~~v~~v 309 (426)
T d1hzua2 240 --RLSALVDVGKTPHPG-------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-YAWKKVAELQGQGGGSLFI 309 (426)
T ss_dssp --EEEEEEECSSCCCCS-------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT-TBTSEEEEEECSSSCCCCE
T ss_pred --cEEEEeccCCccccc-------ceeeeecCCCCceEEeccCCCceEEEeecccccccc-ccceEeEEEecCCCceeEE
Confidence 777777654322111 11222 2222222 234468888888876543211 1112333333331 12222
Q ss_pred ecCCCCc--C---------cCCCCeEEEEEcCCCceee-e-----------cccceEEecCCCCC--eec----ccCCCc
Q 039790 544 TGTTTDA--S---------PDGEHIVQIYCVQTQAIQQ-Y-----------ALDLSQCLPPPLEN--AEL----EKTDSN 594 (1395)
Q Consensus 544 ~~~~~d~--~---------~s~dg~V~lWdv~t~~i~~-~-----------~~~~~~cl~~s~d~--l~~----~~sd~~ 594 (1395)
..+. +. + .+.+++|+|||+.+++... . +......+.|++|+ +.+ +..+.+
T Consensus 310 ~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~ 388 (426)
T d1hzua2 310 KTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388 (426)
T ss_dssp ECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC
T ss_pred EcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCC
Confidence 2222 11 1 1236789999999986421 1 11224456788886 322 234567
Q ss_pred eEEEeecCCCCcceeecc
Q 039790 595 ATRAFDVANPDGSASLES 612 (1395)
Q Consensus 595 v~~iWD~~tg~~~~~l~g 612 (1395)
.+++||..|++....+.+
T Consensus 389 ~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 389 ALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EEEEEETTTTEEEEEECC
T ss_pred eEEEEECCCCeEEEEECC
Confidence 788999999998777773
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=4.6e-17 Score=195.68 Aligned_cols=325 Identities=11% Similarity=0.037 Sum_probs=203.1
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
-++++.+.||.|.|||..+++ +..+..| ..+..++| ++||++|++++.||+|++||+.+++.. .+..+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~f-SpDG~~l~~~s~dg~v~~~d~~t~~~~---------~~~~i 101 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL-SASGRYLFVIGRDGKVNMIDLWMKEPT---------TVAEI 101 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCC---------EEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEE-CCCCCEEEEEcCCCCEEEEEeeCCCce---------EEEEE
Confidence 346888999999999999985 5667666 46999999 999999999999999999999987621 22233
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCcccc-ccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGER-FSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.....+...+.+..|+|+|+++++++.. +.+.+||. ..+.... +..... .. ......+......+.++
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~-~t~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG-ETLEPKKIQSTRGM--------TY-DEQEYHPEPRVAAILAS 171 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET-TTCCEEEEEECCEE--------CT-TTCCEESCCCEEEEEEC
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeC-ccccceeeeccCCc--------cc-cceeccCCCceeEEEEC
Confidence 3333344444555678899988777765 45555554 3332110 000000 00 00011355677889999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++|..++++...++.|.+||..+++.......+.+..+..++|+ |||+++++++..++.|.+||..++
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s----pdg~~~~va~~~~~~v~v~d~~~~-------- 239 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD----GSHRYFITAANARNKLVVIDTKEG-------- 239 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC----TTSCEEEEEEGGGTEEEEEETTTT--------
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceEC----CCCCEEEEeccccceEEEeecccc--------
Confidence 99966778888899999999998876655443333378999999 999999888878889999999887
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEe
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLT 544 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~ 544 (1395)
+.+..+....... +.. ......++..|...++.. .++.|.+|......... ..+.....+.+.+
T Consensus 240 ----~~~~~~~~g~~~~---~~~-~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~-------~~~~v~~~~~~~~ 304 (432)
T d1qksa2 240 ----KLVAIEDTGGQTP---HPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD-------NAWKILDSFPALG 304 (432)
T ss_dssp ----EEEEEEECSSSSB---CCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT-------TBTSEEEEEECSC
T ss_pred ----eEEEEeccCcccc---ccC-cccceecCCCCceecccccCCceEEecccccccccc-------cccEEEEEEEcCC
Confidence 7776665433221 111 112344555555555544 47889999875532111 0111111111111
Q ss_pred cCCCCcCcCCCCeEEEEEcCCCceeeecccceEEecCCCCCeecccCCCceEEEeecCCCC
Q 039790 545 GTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPD 605 (1395)
Q Consensus 545 ~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~ 605 (1395)
+.. ....+.+..+++|+..+...... .....++ +....++.++.| +.+++||+.++.
T Consensus 305 g~~-~~~~s~p~~~~lw~~~~~~~~~~-~~~sv~v-pDg~~la~~s~d-~~~k~w~~~~~~ 361 (432)
T d1qksa2 305 GGS-LFIKTHPNSQYLYVDATLNPEAE-ISGSVAV-FDIKAMTGDGSD-PEFKTLPIAEWA 361 (432)
T ss_dssp SCC-CCEECCTTCSEEEEECTTCSSHH-HHTCEEE-EEGGGCCCSSSC-CCEEEECHHHHH
T ss_pred CCe-EEEEecCCccceeecccCCCCCC-eeeEEEE-EechhhcccccC-CceEeccccccc
Confidence 221 11234567899999877643211 1112333 444456666644 667899986654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.5e-16 Score=175.89 Aligned_cols=284 Identities=8% Similarity=-0.019 Sum_probs=183.1
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee--CCCCCEEEEEEecCCCEE-EEEEc
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI--SDPGLVLGRQIAVNRNYI-CYGLK 236 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~--~h~~~V~~va~Spdg~~L-asGs~ 236 (1395)
++++++.|+.|++||..+ + +.+..+. .+...+.+++|+|||++| ++++.
T Consensus 3 ~~vt~~~d~~v~v~D~~s--~--------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~ 54 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEK--M--------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNK 54 (337)
T ss_dssp EEEEEETTTEEEEEETTT--T--------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCEEEEEECCC--C--------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECC
Confidence 689999999999999542 1 1222222 234557789999999987 46678
Q ss_pred CCeEEEEECCCCc-eEEeccCC-----CCeEEEEEeeCCCCEEEEEEC------------CCcEEEEECCCCCCCCCCcc
Q 039790 237 LGNIRILNIITAL-RSLLRGHT-----QRVTDMAFFAEDVHLLASASV------------DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 237 DG~IrIWd~~~~~-~~~l~~H~-----~~V~slaf~s~dg~~LaSgs~------------DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.|++||+.++. +..+..+. ..+..++| +++++++++++. ++.+.+||..++.
T Consensus 55 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 126 (337)
T d1pbyb_ 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS------- 126 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------
T ss_pred CCeEEEEECCCCcEEEEEecCCCcccccceeeEEE-cCCCcEEEEeecCCcceeeeccccccceeeccccCCe-------
Confidence 9999999999985 44454443 34568999 899999988764 5678889988775
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE--EcccC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL--VGKHD 376 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--l~~h~ 376 (1395)
....+.. ...+..++|++++..+++++.+ ...|+.........+.......+... ....... ...+.
T Consensus 127 -------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 127 -------RRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYA-QPDVLAVWNQHESS 195 (337)
T ss_dssp -------EEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBC-CCBCCCCCCCCTTT
T ss_pred -------EEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcccccee-cCCcceeecccccc
Confidence 2233332 3456789999999988776433 44455433211111111000000000 0000000 00111
Q ss_pred C--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 377 G--EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 377 ~--~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
. .+.......+. ..+..++.++.+.+||..++..... +..+.. .+..+.++ +++.+++. .++.|++||
T Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~---~~~~i~v~d 266 (337)
T d1pbyb_ 196 GVMATPFYTARKDI-DPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVN----PAKTRAFG---AYNVLESFD 266 (337)
T ss_dssp TEEEEEEEEEBTTS-CTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEEC----TTSSEEEE---EESEEEEEE
T ss_pred ceeeeeeeeeeecc-ceeeecccCccEEEEEcCCCcEEEEEecCCCc-ceEEEEec----ccceEEEE---ccccEEEEE
Confidence 1 11122222232 3334445567899999999876654 444544 78889998 89988875 368999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.++ +++.++..... + ..++|++||.+|++++.|+.|++||+.+++
T Consensus 267 ~~~~------------~~~~~~~~~~~-~---------~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 267 LEKN------------ASIKRVPLPHS-Y---------YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp TTTT------------EEEEEEECSSC-C---------CEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCC------------cEEEEEcCCCC-E---------EEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9988 88888764332 1 259999999999999999999999998754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=6.2e-16 Score=176.17 Aligned_cols=309 Identities=8% Similarity=0.006 Sum_probs=194.3
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++|+++++||++++.|+.|.|||+.+++ +..+. .|...+.+++| ++||++| ++++.++.|++||+.+++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~-spDG~~l~v~~~~~~~v~~~d~~t~~~------ 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDNRTAYVLNNHYGDIYGIDLDTCKN------ 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEE-CTTSSEEEEEETTTTEEEEEETTTTEE------
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEE-CCCCCEEEEEECCCCcEEEEeCccCee------
Confidence 4689999999999999999999999986 44554 46667899999 8999986 5666889999999998761
Q ss_pred cccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeC------------CeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 299 ILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIG------------NRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~------------~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+..+..... ....+..+.|++++..++++..+ ..+.+|+.... .
T Consensus 75 -----~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~--------------- 133 (346)
T d1jmxb_ 75 -----TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-L--------------- 133 (346)
T ss_dssp -----EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-G---------------
T ss_pred -----eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc-e---------------
Confidence 111111111 11234578999999988877643 22333332211 0
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
....+... .....+..+.+++++ .++++ ++.+.+||+.+++.+..+..+. .+..+.|+ |++..++..+
T Consensus 134 -~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~ 201 (346)
T d1jmxb_ 134 -EAKPVRTF-PMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVALPLRN--WNRKGYSA----PDVLYFWPHQ 201 (346)
T ss_dssp -GBCCSEEE-ECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEEECSTT--CCCTTBCC----CBCCCCCCCC
T ss_pred -eeeEEEee-eccCceEEEEecCCC-EEEEe---CCcceEEEccCCCEEEEEecCC--CccceEEe----ccccEEEEEe
Confidence 00111111 123455667777766 55554 3569999999999999998775 57788888 8888777666
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
..++.+.+|+... .+......++++..++.+.+|++.++..
T Consensus 202 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (346)
T d1jmxb_ 202 SPRHEFSMLYTIA--------------------------------------RFKDDKQDPATADLLYGYLSVDLKTGKT- 242 (346)
T ss_dssp CTTCEEEEEEEEE--------------------------------------EC-------CCCEEEEEEEEEETTTCCE-
T ss_pred cCCCceEeeeeee--------------------------------------eeccCceeEeeccCCceEEEEECCCCce-
Confidence 5667777665321 1122334445556677899999877542
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCceeee--cccceEEecCCCCC--eecccCCCceEE
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQY--ALDLSQCLPPPLEN--AELEKTDSNATR 597 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~~--~~~~~~cl~~s~d~--l~~~~sd~~v~~ 597 (1395)
......... ...+.......+.. ...++.|++||+.++++... ......|+.+++|+ +.++..| +.++
T Consensus 243 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d-~~v~ 316 (346)
T d1jmxb_ 243 ---HTQEFADLT--ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF-NDLA 316 (346)
T ss_dssp ---EEEEEEECS--SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS-SEEE
T ss_pred ---EEEEeeccc--ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC-CcEE
Confidence 111111111 12222222220111 12346799999999876432 22345577777775 6666644 6778
Q ss_pred EeecCCCCcceeeccCCC
Q 039790 598 AFDVANPDGSASLESSHG 615 (1395)
Q Consensus 598 iWD~~tg~~~~~l~g~~~ 615 (1395)
+||+.|++.+.+++-+.|
T Consensus 317 v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 317 VFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEETTTTEEEEEEECSSS
T ss_pred EEECccCCEEEEEECCCC
Confidence 999999999999995544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.8e-14 Score=163.55 Aligned_cols=284 Identities=12% Similarity=0.126 Sum_probs=184.2
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEE-cCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGL-KLG 238 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs-~DG 238 (1395)
.+++++.|+.|++|++.. .|. .+.+..+ .|.+.+.+++|+|||++|++++ .|+
T Consensus 6 v~v~~~~~~~I~v~~~~~-~~~------------------------l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~ 59 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNH-EGA------------------------LTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEF 59 (333)
T ss_dssp EEEEEGGGTEEEEEEECT-TSC------------------------EEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred EEEECCCCCcEEEEEEcC-CCC------------------------eEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCC
Confidence 457788899999999442 111 0112222 3668889999999999996665 589
Q ss_pred eEEEEECCCCc-eE---EeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 239 NIRILNIITAL-RS---LLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 239 ~IrIWd~~~~~-~~---~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
.|++|++..+. .. ....+...+..++| ++||++|++++. +++|++|+..... .........+
T Consensus 60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~-spDg~~l~v~~~~~~~v~~~~~~~~~------------~~~~~~~~~~ 126 (333)
T d1ri6a_ 60 RVLAYRIAPDDGALTFAAESALPGSLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGL------------PVGVVDVVEG 126 (333)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTE------------EEEEEEEECC
T ss_pred eEEEEEEeCCCCcEEEeeecccCCCceEEEE-cCCCCEEeecccCCCceeeecccccc------------ceecccccCC
Confidence 99999998652 22 22334556888999 999999998885 6789999987654 1122233445
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
...+..+.+++++..+++++..+. +..|+........ ..........+......++|++++...+
T Consensus 127 ~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV--------------AQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE--------------EEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CccceEEEeeecceeeeccccccceeeEEEeccCCcce--------------eeeceeeeeecCCCccEEEEeccceeEE
Confidence 566778999999998888887655 4445443322110 0000112233556678999999984445
Q ss_pred EEEeCCCcEEEEeCCCCc----eeEEec------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 393 ASASLDGTVKIWDDRKST----PLAVLR------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~----~l~tl~------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
++....+...+|++.... ....+. .... ....++|+ +|+++++.++..++.+.+|++...
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s----~d~~~~~~~~~~~~~~~~~~~~~~----- 262 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR-WAADIHIT----PDGRHLYACDRTASLITVFSVSED----- 262 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC-CEEEEEEC----TTSSEEEEEETTTTEEEEEEECTT-----
T ss_pred eeccccCceEEEeecccccceeeeeeeeeeecCCCccc-cceeEEEe----cccCceeeecccCCeEEEEEEcCC-----
Confidence 555567788888865432 222221 1122 56778898 999999888878999999998765
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDY 519 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~ 519 (1395)
.....+..+.... .....++|+|||++|+++ ..++.|++|+++.
T Consensus 263 -------~~~~~~~~~~~~~------~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 263 -------GSVLSKEGFQPTE------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp -------SCCEEEEEEEECS------SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred -------CCEEEEEEEeCCC------CCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 2222222211100 011248999999987665 4678999997754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=2e-15 Score=171.18 Aligned_cols=291 Identities=8% Similarity=0.067 Sum_probs=173.6
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEec--cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLR--GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~--~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+||++++.|+.|+|||+.++. +..+. .+...+.+++| ++||++| ++++.|+.|++||+.+++. +
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~-spDg~~l~v~~~~~~~v~v~D~~t~~~-----------~ 69 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV-APGGRIAYATVNKSESLVKIDLVTGET-----------L 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEE-CTTSSEEEEEETTTTEEEEEETTTCCE-----------E
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEE-CCCCCEEEEEECCCCeEEEEECCCCcE-----------E
Confidence 589999999999999999985 44454 34567889999 8999987 5677899999999999871 1
Q ss_pred EEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 305 VAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 305 ~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
..+..... +...+..+.|+|++..+++++.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~------------------------------------------- 106 (337)
T d1pbyb_ 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE------------------------------------------- 106 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------------------
T ss_pred EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce-------------------------------------------
Confidence 11111000 011122334444443333222110000
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
.......++.+.+||..++..+..+..+. .+.+++|+ +||+++++++ +.+.+||..++
T Consensus 107 --------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s----~dg~~l~~~~---~~~~~~d~~~~----- 164 (337)
T d1pbyb_ 107 --------LTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWA----RDGSKLYGLG---RDLHVMDPEAG----- 164 (337)
T ss_dssp --------SSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEEC----TTSSCEEEES---SSEEEEETTTT-----
T ss_pred --------eeeccccccceeeccccCCeEEEeccccC--CceEEEEc----CCCCEEEEEc---CCcceeeeecC-----
Confidence 00011246789999999999999998664 68999999 9999999854 45789999887
Q ss_pred CCCcccccEEEEEeccCccccccc--c-c-----------ccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcce
Q 039790 463 PSDIESWKCTQTLELKSSAELRLE--D-A-----------FFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRM 528 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~--~-~-----------~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~ 528 (1395)
++..++..+........ . . +.........+...+..+..++.+++|++..+..
T Consensus 165 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 231 (337)
T d1pbyb_ 165 -------TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM------ 231 (337)
T ss_dssp -------EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE------
T ss_pred -------cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE------
Confidence 77776655432211000 0 0 0000011111222222233455688888876531
Q ss_pred eeeeeeecc-ccEEEEecCCC-CcCcCCCCeEEEEEcCCCceeee--cccceEEecCCCCC--eecccCCCceEEEeecC
Q 039790 529 DYIAEFTVT-MPILSLTGTTT-DASPDGEHIVQIYCVQTQAIQQY--ALDLSQCLPPPLEN--AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 529 ~~i~~f~~~-~~ils~~~~~~-d~~~s~dg~V~lWdv~t~~i~~~--~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~ 602 (1395)
....+... .....+..... ..+...++.|++||+.++++... ......|+.+++|+ +.++..+ +.+++||+.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~-~~i~v~D~~ 309 (337)
T d1pbyb_ 232 -AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL-GDLAAYDAE 309 (337)
T ss_dssp -EEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS-SEEEEEETT
T ss_pred -EEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC-CcEEEEECC
Confidence 11112111 12222222220 11234568899999999876432 22335688888876 6666544 667899999
Q ss_pred CCCcceeec
Q 039790 603 NPDGSASLE 611 (1395)
Q Consensus 603 tg~~~~~l~ 611 (1395)
+++.+.+++
T Consensus 310 t~~~v~~i~ 318 (337)
T d1pbyb_ 310 TLEKKGQVD 318 (337)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 999998887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=1.2e-14 Score=165.24 Aligned_cols=295 Identities=11% Similarity=-0.010 Sum_probs=179.3
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee-CCCCCEEEEEEecCCCEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI-SDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~-~h~~~V~~va~Spdg~~La 232 (1395)
.++.+..|++++.|+.|.+||+.. + +.+.++. .|...+.+++|+|||++|+
T Consensus 4 ~~~~~~~l~~~~~~~~v~v~D~~t--~--------------------------~~~~t~~~~~~~~p~~l~~spDG~~l~ 55 (346)
T d1jmxb_ 4 LKAGHEYMIVTNYPNNLHVVDVAS--D--------------------------TVYKSCVMPDKFGPGTAMMAPDNRTAY 55 (346)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTT--T--------------------------EEEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred CCCCCcEEEEEcCCCEEEEEECCC--C--------------------------CEEEEEEcCCCCCcceEEECCCCCEEE
Confidence 456668999999999999999541 1 2333343 3445678999999999875
Q ss_pred -EEEcCCeEEEEECCCCceE-Eecc------CCCCeEEEEEeeCCCCEEEEEE------------CCCcEEEEECCCCCC
Q 039790 233 -YGLKLGNIRILNIITALRS-LLRG------HTQRVTDMAFFAEDVHLLASAS------------VDGRFFIWNITEGPD 292 (1395)
Q Consensus 233 -sGs~DG~IrIWd~~~~~~~-~l~~------H~~~V~slaf~s~dg~~LaSgs------------~DgtV~IWdl~tg~~ 292 (1395)
+++.++.|++||+.++... .+.. +...+..++| ++||++|+.++ .++.+.+||..+++.
T Consensus 56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~-s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEE-ecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 5567899999999998532 3322 2234678999 99999988765 477889999887662
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC-CCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE-PLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~ 371 (1395)
.... ... .....+..+.+++++ .+++.+ ..+..|+.........+.... ...+........+..
T Consensus 135 ~~~~-----------~~~-~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (346)
T d1jmxb_ 135 AKPV-----------RTF-PMPRQVYLMRAADDG-SLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199 (346)
T ss_dssp BCCS-----------EEE-ECCSSCCCEEECTTS-CEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred eeEE-----------Eee-eccCceEEEEecCCC-EEEEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEE
Confidence 2111 111 112233445555554 344432 344445443221111111000 000000000000001
Q ss_pred EcccCCCeE---EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 372 VGKHDGEIT---ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 372 l~~h~~~V~---slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
.......+. ...+.......++++..++.+.+||+.++..... +..|.. .+.++.++ +++.+++... ++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~--~~ 272 (346)
T d1jmxb_ 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE-LYFTGLRS----PKDPNQIYGV--LN 272 (346)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEEC----SSCTTEEEEE--ES
T ss_pred EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccc-eeEEEEEe----CCCCEEEEec--CC
Confidence 111111111 1112222225667777888999999999876554 445665 88999998 8888887754 57
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|++||+.++ +++..+.... .+ ..++|++||++|++++.|+.|++||+.+++
T Consensus 273 ~v~v~d~~~~------------~~~~~~~~~~-~~---------~~va~s~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 273 RLAKYDLKQR------------KLIKAANLDH-TY---------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp EEEEEETTTT------------EEEEEEECSS-CC---------CEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred eEEEEECCCC------------cEEEEEcCCC-CE---------EEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence 8999999988 8888776433 22 259999999999999999999999998754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.63 E-value=1.6e-13 Score=159.09 Aligned_cols=307 Identities=7% Similarity=-0.093 Sum_probs=189.4
Q ss_pred eCCCCCEEEEEEecCCCEEEEE-----EcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE---------
Q 039790 213 ISDPGLVLGRQIAVNRNYICYG-----LKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS--------- 277 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasG-----s~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs--------- 277 (1395)
..+.+.+.+++++|||+.+++. +.++.|.|||..+++ +..+..+.. ..++| ++||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~-SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVA-AHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEE-cCCCCEEEEEeecCCccccc
Confidence 3577889999999999998764 234679999999885 446655544 37999 99999998875
Q ss_pred -CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC-------CccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCC
Q 039790 278 -VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS-------VHPRVCWHPHKQEILMLAIG--NRILKIDSNRVG 347 (1395)
Q Consensus 278 -~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~-------~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~ 347 (1395)
.++.|.|||..+++.. ..+..+.. ....+.|++++..+++...+ +.+..|+... .
T Consensus 94 ~~~~~v~v~D~~t~~~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~ 158 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPI--------------ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-S 158 (373)
T ss_pred ccceEEEEEECCCCcEE--------------EEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-C
Confidence 4578999999998721 11111111 12346777777766555432 2233333211 1
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HP 422 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~ 422 (1395)
....+.....++.|+++|...+++.+.|+++.+||...+........+.. ..
T Consensus 159 -----------------------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (373)
T d2madh_ 159 -----------------------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL 215 (373)
T ss_pred -----------------------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccce
Confidence 11234456778999999977888999999999999999887776553221 12
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
...+.+. +++.+++. + .++.+++|+...+. ...+..+..+..... ...+.+.+..
T Consensus 216 ~~~~~~~----~~~~~~~~-~-~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~~~ 270 (373)
T d2madh_ 216 TQPAQAN----KSGRIVWP-V-YSGKILQADISAAG----------ATNKAPIDALSGGRK---------ADTWRPGGWQ 270 (373)
T ss_pred eeeEEEC----CCceEEEe-c-CCceEEEEEcCCCe----------EEEEEeeccccCcEE---------eeeeccCcce
Confidence 3445554 55555543 4 79999999988761 122233333222111 1334444444
Q ss_pred EEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceee-e-cccceEEec
Q 039790 503 LLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQ-Y-ALDLSQCLP 580 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~-~-~~~~~~cl~ 580 (1395)
.++.+.|+...+|-...+. .+ .. ...++.|.+||+.+++... . ......++.
T Consensus 271 ~~~~~~d~~~~~~~~~~~~------------------~~-~~-------~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a 324 (373)
T d2madh_ 271 QVAYLKSSDGIYLLTSEQS------------------AW-KL-------HAAAKEVTSVTGLVGQTSSQISLGHDVDAIS 324 (373)
T ss_pred eeEEecCCCeEEEecCCCc------------------eE-Ee-------ecCCCeEEEEECCCCcEEEEecCCCCeeEEE
Confidence 4455544443322211100 00 00 1234578889988886533 2 223455677
Q ss_pred CCCCC---eecccCCCceEEEeecCCCCcceeec
Q 039790 581 PPLEN---AELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 581 ~s~d~---l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
|++|+ +.+....++.+++||+.||+.++.+.
T Consensus 325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 88775 33445566778899999999999998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.58 E-value=1.1e-12 Score=151.74 Aligned_cols=288 Identities=11% Similarity=0.016 Sum_probs=169.6
Q ss_pred EEeecCCCCEEEEeCcCCCCCee-e-------eCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 161 TVVIPSAPPVRLRSSKVPKGRHL-I-------GNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 161 Las~s~Dg~Vrlwd~~sp~Gr~L-~-------G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
++.+..++.+..+. ++|+|+.+ . +...+|.++.. . ++.+.++..+.. ..++|+|||++|+
T Consensus 14 ~a~~~~~~p~~~~a-~spdg~~~~~~~~~~~~~~~~v~v~D~~-t--------g~~~~~~~~~~~--~~~a~SpDG~~l~ 81 (373)
T d2madh_ 14 LAAGAADGPTNDEA-PGADGRRSYINLPAHHSAIIQQWVLDAG-S--------GSILGHVNGGFL--PNPVAAHSGSEFA 81 (373)
T ss_pred hhcccCCCCccccc-cCCCCCEEEEEcccccCCCceEEEEECC-C--------CCEEEEEeCCCC--ccEEEcCCCCEEE
Confidence 33444455555544 55666655 1 12345555532 1 234445554443 3689999999999
Q ss_pred EEE----------cCCeEEEEECCCCc-eEEeccCCCCe-------EEEEEeeCCCCEEEEEE--CCCcEEEEECCCCCC
Q 039790 233 YGL----------KLGNIRILNIITAL-RSLLRGHTQRV-------TDMAFFAEDVHLLASAS--VDGRFFIWNITEGPD 292 (1395)
Q Consensus 233 sGs----------~DG~IrIWd~~~~~-~~~l~~H~~~V-------~slaf~s~dg~~LaSgs--~DgtV~IWdl~tg~~ 292 (1395)
+++ .++.|+|||..++. +..+..+.... ..+.| +++++.++... .++.+.+|+....+.
T Consensus 82 va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE-EeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence 875 35789999999985 44555554433 34667 67777655443 356788888776541
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
. .+.....++.+++++..++++.. ++.+.+|+......... ......
T Consensus 161 --------------~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~--------------~~~~~~ 208 (373)
T d2madh_ 161 --------------D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG--------------LVGAML 208 (373)
T ss_pred --------------E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE--------------Eeeecc
Confidence 1 11123457889999987766554 55565665433211100 000000
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee--EEecCCCC---------CCeeEEEEeecCCCCCcEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL--AVLRPYDG---------HPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l--~tl~~h~~---------~~V~sV~fs~~~~pdg~~L~ 440 (1395)
..++......+.++++ ..++..+.++++++|+...+... ..+..+.. .....++++ +++.+++
T Consensus 209 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~ 282 (373)
T d2madh_ 209 TAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL----KSSDGIY 282 (373)
T ss_pred ccCccceeeeEEECCC--ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEe----cCCCeEE
Confidence 1112223344555554 35667778999999998876432 23322221 022334554 4554433
Q ss_pred EE---------ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC--EEEEEeCC
Q 039790 441 TG---------GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL--FLLANAKK 509 (1395)
Q Consensus 441 s~---------Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~--~LaSgs~D 509 (1395)
.. ...++.|.+||..++ +.+..+...... ..++|++||+ ++++++.|
T Consensus 283 ~~~~~~~~~~~~~~~~~v~~~d~~t~------------~~~~~~~~~~~~----------~~~a~spDG~~~l~vt~~~d 340 (373)
T d2madh_ 283 LLTSEQSAWKLHAAAKEVTSVTGLVG------------QTSSQISLGHDV----------DAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred EecCCCceEEeecCCCeEEEEECCCC------------cEEEEecCCCCe----------eEEEECCCCCEEEEEEeCCC
Confidence 21 236788999999888 777777643321 2589999998 45788999
Q ss_pred CeEEEEEcCCCC
Q 039790 510 NAIYAIHMDYGP 521 (1395)
Q Consensus 510 g~I~iWdl~~g~ 521 (1395)
+.|++||+.+|+
T Consensus 341 ~~v~v~D~~tg~ 352 (373)
T d2madh_ 341 EVLHIYDAGAGD 352 (373)
T ss_pred CeEEEEECCCCC
Confidence 999999999875
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.4e-13 Score=151.90 Aligned_cols=245 Identities=12% Similarity=0.120 Sum_probs=160.7
Q ss_pred EEEEEcCCeEEEEECCCC-ceE--EeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITA-LRS--LLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~--~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+++++.|++|+||+++.. .+. ....|.+.|.+|+| ++||++|++++ .|++|++|++...... ..
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~-spDG~~L~v~~~~d~~i~~~~i~~~~~~-----------~~ 74 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------LT 74 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEE-CTTSSEEEEEETTTTEEEEEEECTTTCC-----------EE
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEE-eCCCCEEEEEECCCCeEEEEEEeCCCCc-----------EE
Confidence 467778999999999754 333 33468899999999 99999885555 5899999999876511 11
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
+............++|+|+++++++++.++..+.++....... ........+...+.++.|++
T Consensus 75 ~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~~v~~s~ 137 (333)
T d1ri6a_ 75 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----------------VGVVDVVEGLDGCHSANISP 137 (333)
T ss_dssp EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----------------EEEEEEECCCTTBCCCEECT
T ss_pred EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc-----------------eecccccCCCccceEEEeee
Confidence 1122223445668999999999998887666555554322111 11233445777889999999
Q ss_pred CCCcEEEEEe-CCCcEEEEeCCCCceeEE-----ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 387 WLTTRLASAS-LDGTVKIWDDRKSTPLAV-----LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 387 dg~~~LaSgs-~Dg~IrIWDl~sg~~l~t-----l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
++ ++++.++ .+..|.+|+......... .....+.....++|+ +++.+++..+...+...+|++....
T Consensus 138 d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~----~~~~~~~~~~~~~~~~~v~~~~~~~-- 210 (333)
T d1ri6a_ 138 DN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH----PNEQYAYCVNELNSSVDVWELKDPH-- 210 (333)
T ss_dssp TS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEESSCTT--
T ss_pred cc-eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEe----ccceeEEeeccccCceEEEeecccc--
Confidence 99 5655555 566799999876533221 112222367899998 8999888877678889999876541
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDYG 520 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~g 520 (1395)
........+........ .......++++++|++++. +..++.+.+|++...
T Consensus 211 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~ 262 (333)
T d1ri6a_ 211 ------GNIECVQTLDMMPENFS---DTRWAADIHITPDGRHLYACDRTASLITVFSVSED 262 (333)
T ss_dssp ------SCCEEEEEEECSCTTCC---SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ------cceeeeeeeeeeecCCC---ccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence 11123333332221111 1112235788999986655 456789999998764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=1.3e-12 Score=149.67 Aligned_cols=239 Identities=8% Similarity=-0.014 Sum_probs=148.9
Q ss_pred EEEEEecCCCEEEEE----------EcCCeEEEEECCCCc-eEEeccC-------CCCeEEEEEeeCCCCEEEEEE--CC
Q 039790 220 LGRQIAVNRNYICYG----------LKLGNIRILNIITAL-RSLLRGH-------TQRVTDMAFFAEDVHLLASAS--VD 279 (1395)
Q Consensus 220 ~~va~Spdg~~LasG----------s~DG~IrIWd~~~~~-~~~l~~H-------~~~V~slaf~s~dg~~LaSgs--~D 279 (1395)
..++|||||++|++. ..||.|+|||..++. +..+..+ ......++| ++++++++.+. .+
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPA 128 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSS
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE-ecCCCeeEEecCCCC
Confidence 368999999988764 457899999999985 3333322 223456889 89999887765 45
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
..+++|+..+++. +..+..... .......+.+++++..+++...++....+......
T Consensus 129 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~-------- 189 (355)
T d2bbkh_ 129 PAVGVVDLEGKAF-----------KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-------- 189 (355)
T ss_dssp CEEEEEETTTTEE-----------EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC--------
T ss_pred ceeeeeecCCCcE-----------eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc--------
Confidence 7899999998761 111111000 00111223444444433333222221111111000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee--EEecCCCC---------CCee
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL--AVLRPYDG---------HPVN 424 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l--~tl~~h~~---------~~V~ 424 (1395)
...+...+....+.+++ ..++.++.++++++||+..+... ....++.. ....
T Consensus 190 ----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 252 (355)
T d2bbkh_ 190 ----------------HPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252 (355)
T ss_dssp ----------------SCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred ----------------cceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE
Confidence 11234445566778877 68889999999999999887532 22222211 1345
Q ss_pred EEEEeecCCCCCcEEEEEecC---------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 425 CVTFLIGPHPQHIVLITGGPL---------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 425 sV~fs~~~~pdg~~L~s~Gs~---------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
.++++ +++.+++..... .+.|.+||..++ +.+.++..... + ..++
T Consensus 253 ~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~------------~~~~~~~~~~~-~---------~~~a 306 (355)
T d2bbkh_ 253 QVAYH----RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG------------ERLAKFEMGHE-I---------DSIN 306 (355)
T ss_dssp CEEEE----TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEEEEEE-E---------CEEE
T ss_pred EEEEe----CCCCeEEEEeccCCceeecCCCCeEEEEeCCCC------------cEEEEecCCCC-E---------EEEE
Confidence 68888 888887765422 247999999988 77777764332 1 2589
Q ss_pred EeCCCC--EEEEEeCCCeEEEEEcCCCC
Q 039790 496 LNRAGL--FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 496 ~S~dg~--~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++||+ ++++++.|+.|++||+.+|+
T Consensus 307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 307 VSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 999997 55677889999999999875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=2.6e-12 Score=147.19 Aligned_cols=301 Identities=10% Similarity=0.024 Sum_probs=170.2
Q ss_pred EEecCCCEEEEEE-----cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEE----------ECCCcEEEEE
Q 039790 223 QIAVNRNYICYGL-----KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASA----------SVDGRFFIWN 286 (1395)
Q Consensus 223 a~Spdg~~LasGs-----~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSg----------s~DgtV~IWd 286 (1395)
+.+|||+++++.. .++.|.|||..++. +..+..+. +..++| ++||++|+.. +.|+.|++||
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~-SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVV-ADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEE-CTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEE-cCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 4689999987653 35679999999985 45555443 447999 9999988764 4578999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCC----CCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADG----DSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+++ .+..+...... ......+.|++++..+++.... +....++....+..
T Consensus 85 ~~t~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~------------ 141 (355)
T d2bbkh_ 85 PVTLL-----------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF------------ 141 (355)
T ss_dssp TTTCC-----------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE------------
T ss_pred CCCCC-----------EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE------------
Confidence 99887 22222222211 1234568999999988776543 33333333332221
Q ss_pred ccccccceEEEcccC-------CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 362 VDELINGVQLVGKHD-------GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~-------~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
...+..+. .....+.|++|+..+++....++.+.+++...... .+.. .+....+. +
T Consensus 142 -------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~----~ 204 (355)
T d2bbkh_ 142 -------KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEF-LINHPAYS----Q 204 (355)
T ss_dssp -------EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSC-BCSCCEEE----T
T ss_pred -------eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecc-eeeecccc----C
Confidence 12222111 12233445555532333333344444444333221 2222 56667787 7
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
++..++.++ .++.+++|++..+.- .++.....+...... ..+.+++...++.+.|+...+
T Consensus 205 ~~~~~~~~~-~~~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~---------~~~~p~~~~~~~~~~d~~~~~ 264 (355)
T d2bbkh_ 205 KAGRLVWPT-YTGKIHQIDLSSGDA----------KFLPAVEALTEAERA---------DGWRPGGWQQVAYHRALDRIY 264 (355)
T ss_dssp TTTEEEEEB-TTSEEEEEECTTSSC----------EECCCEESSCHHHHH---------TTEEECSSSCEEEETTTTEEE
T ss_pred CCCeEEEec-CCCeEEEEecCCCcE----------EEEeccCCcccceEe---------eeeeccceEEEEEeCCCCeEE
Confidence 777777765 899999999987611 223333333322111 223344444444454544433
Q ss_pred EEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceee-e-cccceEEecCCCCC---eecc
Q 039790 515 IHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQ-Y-ALDLSQCLPPPLEN---AELE 589 (1395)
Q Consensus 515 Wdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~-~-~~~~~~cl~~s~d~---l~~~ 589 (1395)
|....+. . .....+...|++||+.++++.. . ......|+.+++|+ +.++
T Consensus 265 ~~~~~~~-------------------------~-~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 265 LLVDQRD-------------------------E-WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318 (355)
T ss_dssp EEEEECC-------------------------T-TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred EEeccCC-------------------------c-eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 3321110 0 0011334578899988876532 1 11224577777774 3344
Q ss_pred cCCCceEEEeecCCCCcceeecc
Q 039790 590 KTDSNATRAFDVANPDGSASLES 612 (1395)
Q Consensus 590 ~sd~~v~~iWD~~tg~~~~~l~g 612 (1395)
...++.+++||+.||+.++++.+
T Consensus 319 ~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 319 STGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp ETTTTEEEEEETTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCCCEEEEEeC
Confidence 44557778999999999999983
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=2.9e-10 Score=131.75 Aligned_cols=250 Identities=6% Similarity=-0.063 Sum_probs=146.2
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEeccCC-------CCeEEEEEeeCCC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRGHT-------QRVTDMAFFAEDV 270 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~H~-------~~V~slaf~s~dg 270 (1395)
+.++.++... .++|++||++|++.+ .|+.|++||..++. ...+..|. .....++| ++||
T Consensus 59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~-SpDG 135 (368)
T d1mdah_ 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN-CASS 135 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE-CTTS
T ss_pred EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE-CCCC
Confidence 3344444443 578999999988764 37789999999874 34443322 22346899 9999
Q ss_pred CEEEEEE-CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 271 HLLASAS-VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 271 ~~LaSgs-~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
++|+.+. .++.|.+||+.+++. +.....+.... .+......+++.+.++.+..+.....+..
T Consensus 136 k~l~va~~~~~~v~~~d~~~~~~--------------~~~~~~~~~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 136 ACLLFFLFGSSAAAGLSVPGASD--------------DQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE--------------EEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CEEEEEeCCCCeEEEEECCCCcE--------------eEEeeccCcce---EccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 9988776 579999999998761 22222111111 11111223344444555555554332221
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe--cCCCC-------
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL--RPYDG------- 420 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl--~~h~~------- 420 (1395)
..... ...+..+...+..+.+.+++ .++.+ .++.+.++|...+...... ..+..
T Consensus 199 ~~~~~--------------~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (368)
T d1mdah_ 199 AGIVG--------------AQCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CEECC--------------CCSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred eeeee--------------cccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeee
Confidence 10000 01122344555566777766 44443 3455666666555433222 11110
Q ss_pred --CCeeEEEEeecCCCCCcEEEEEecCC--------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccccccc
Q 039790 421 --HPVNCVTFLIGPHPQHIVLITGGPLN--------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFF 490 (1395)
Q Consensus 421 --~~V~sV~fs~~~~pdg~~L~s~Gs~D--------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~ 490 (1395)
.....++++ +++..++.....+ ..|.+||..++ +.+.++.... .
T Consensus 262 ~~~g~~~~a~~----~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~------------~~~~~~~~~~-~--------- 315 (368)
T d1mdah_ 262 RSAGFQMVAKL----KNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISNGH-D--------- 315 (368)
T ss_dssp EECSSSCEEEE----TTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEEEE-E---------
T ss_pred cCCCceeEEEc----CCCCEEEEEecCCCceeecCCceEEEEECCCC------------cEeEEecCCC-c---------
Confidence 023457787 7887766543222 35999999988 7777665432 1
Q ss_pred ceEEEEeCCCC--EEEEEeCCCeEEEEEcCCCC
Q 039790 491 NQVVALNRAGL--FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 491 ~~~l~~S~dg~--~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...++|++||+ +++++..|+.|++||..+|+
T Consensus 316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 12589999997 45677789999999998875
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.04 E-value=8.3e-09 Score=123.36 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=87.7
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEc---------CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLK---------LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~---------DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+..|...|.++.|||||++|++++. ++.+.|||+.++....+..|.+.+..+.| +|||++||... ++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~-SPDG~~ia~~~-~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTW-SPVGHKLAYVW-NND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEE-CSSTTCEEEEE-TTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccc-ccCcceeeEee-ccc
Confidence 34566778999999999999998853 57889999999998889999999999999 99999999864 678
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEe------cCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQIL------ADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~------~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
+++|+..++.............+ +... .........+.|+|+|..++....+.
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~--~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDII--YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTE--EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred ceEEECCCCceeeeeeccCCCcc--cccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 99999998873221100000000 0000 00123345688999999888776543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.01 E-value=7.6e-09 Score=121.41 Aligned_cols=312 Identities=11% Similarity=-0.036 Sum_probs=171.3
Q ss_pred eEEeecCCCCEEEEeCcCCCCCee--eeCceEEEEEeccCCCccC--c------c-cccceeeeeCCCCCEEEEEEecCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHL--IGNHSVYDIDVRLDGEVQP--Q------L-EVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L--~G~~~v~~v~~~~~G~~~~--~------~-~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
.+++++.+|.|++|++ |.+|.+ .. -+.+++...- . + ..........|.....+..+++||
T Consensus 13 ~f~Sgg~sG~V~V~dl--pS~r~l~~Ip-------Vfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG 83 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGV--PSMRELMRIP-------VFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG 83 (441)
T ss_dssp EEEECBTTCCEEEEEE--TTTEEEEEEC-------SSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE
T ss_pred EEEeCCCCCcEEEEeC--CCCcEEEEEE-------eEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC
Confidence 4678899999999994 566665 11 0121111000 0 0 001111233466667777788999
Q ss_pred CEEEEEE-cCCeEEEEECCCCce-EEe-ccCCCCeEEEEEeeCCCC--EEEEEECCCc-----------------EEEEE
Q 039790 229 NYICYGL-KLGNIRILNIITALR-SLL-RGHTQRVTDMAFFAEDVH--LLASASVDGR-----------------FFIWN 286 (1395)
Q Consensus 229 ~~LasGs-~DG~IrIWd~~~~~~-~~l-~~H~~~V~slaf~s~dg~--~LaSgs~Dgt-----------------V~IWd 286 (1395)
++|++.. .++.|.+||+.+.+. ..+ ..+...+..++| +++++ |++..+.+.. +..+|
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~-spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRL-QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEE-CCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEE-eccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 9997764 678999999999853 333 346678999999 88888 5555444321 23455
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE-EEEcCCCC-----------ccccccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL-KIDSNRVG-----------KGERFSA 354 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii-~~d~~~~~-----------~~~~~s~ 354 (1395)
..+.+ ....+. .. .....+.|+|+++++++++.+.... .++..... ....+..
T Consensus 163 ~~t~~-----------v~~qI~--v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 163 AETMD-----------VAWQVI--VD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp TTTCS-----------EEEEEE--ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred Cccce-----------eeEEEe--cC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 55543 111221 11 2356799999999998887653221 11110000 0001111
Q ss_pred CCCC-------ccCcc--ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce----------eEEe
Q 039790 355 EEPL-------KCPVD--ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP----------LAVL 415 (1395)
Q Consensus 355 ~~~~-------~~~~~--~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~----------l~tl 415 (1395)
++.+ ...++ .....+..+... .....+.++|||..+++++..|++|.|||+.+... ....
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 1111 11111 111223444433 34678999999955667888999999999865211 0111
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
....+-......|. ++|..+.+ ...|.+|..|++.... ..-.....+..+..+..|-..- | ........
T Consensus 307 ~~~~glgplh~~fd----~~g~~yts-~~~ds~v~kw~~~~~~--~~~~~~~~~~v~~~~~v~y~~G---H-~~~~~~~t 375 (441)
T d1qnia2 307 EPELGLGPLHTTFD----GRGNAYTT-LFIDSQVCKWNIADAI--KHYNGDRVNYIRQKLDVQYQPG---H-NHASLTES 375 (441)
T ss_dssp CCBCCSCEEEEEEC----SSSEEEEE-ETTTTEEEEEEHHHHH--HHHTTCCCCCEEEEEECSSCEE---E-EEETTTTS
T ss_pred ecccccCcccceec----CCceEEEc-ccccceEEEeccchhh--hhhccCCCceeEeccccccCCC---C-Cccccccc
Confidence 11112235566888 77865544 5699999999984210 0000012334566665442110 1 01112356
Q ss_pred EeCCCCEEEEEeC
Q 039790 496 LNRAGLFLLANAK 508 (1395)
Q Consensus 496 ~S~dg~~LaSgs~ 508 (1395)
++|||+||+++++
T Consensus 376 ~~pdGk~l~s~~k 388 (441)
T d1qnia2 376 RDADGKWLVVLSK 388 (441)
T ss_dssp TTCCCCEEEEEES
T ss_pred cCCCCcEEEecCc
Confidence 7899999999953
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=9.3e-09 Score=118.67 Aligned_cols=219 Identities=8% Similarity=-0.027 Sum_probs=126.4
Q ss_pred EEEEecCCCEEEEEE-cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 221 GRQIAVNRNYICYGL-KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 221 ~va~Spdg~~LasGs-~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
+++|++||++|+++. .++.|.+||+.++. ...+..+.... .+ +.....++..+.||++.+|++..+......
T Consensus 128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~-~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~-- 201 (368)
T d1mdah_ 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH---IH-PGAAATHYLGSCPASLAASDLAAAPAAAGI-- 201 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---CE-EEETTEEECCCCTTSCEEEECCSSCCCCEE--
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce---Ec-cCCCceEEEEcCCCCEEEEEecCCceeeee--
Confidence 578999999998886 57999999999985 34444443322 12 334567788888999999998765521100
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
........+......+.+.+++..+ ...++.+..++............... ......... ..+.
T Consensus 202 ------~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~g 265 (368)
T d1mdah_ 202 ------VGAQCTGAQNCSSQAAQANYPGMLV--WAVASSILQGDIPAAGATMKAAIDGN----ESGRKADNF----RSAG 265 (368)
T ss_dssp ------CCCCSCTTSCBCSCCEEETTTTEEE--ECBSSCCEEEECCSSCCEEECCCCSS----CTHHHHTTE----EECS
T ss_pred ------eecccccccccceeecccccCcEEE--EecCCCEEEEeecCCceEEEeecccc----cceeeeeee----cCCC
Confidence 0001111222333345555554322 22233333333221110000000000 000000000 1112
Q ss_pred eEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCeE
Q 039790 379 ITELSMCQWLTTRLASASLD--------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNREL 449 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~D--------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I 449 (1395)
...+++++++..+++....+ ..|.+||..+++.+.++... . .+.+++|+ |||+ +|++++..|++|
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~~a~s----pDG~~~ly~s~~~~~~v 339 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-H-DSDAIIAA----QDGASDNYANSAGTEVL 339 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-E-EECEEEEC----CSSSCEEEEEETTTTEE
T ss_pred ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-C-ceeEEEEC----CCCCEEEEEEeCCCCeE
Confidence 23478889884444443322 35999999999999888744 3 79999999 9997 455556689999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
+|||..++ +.+.++....
T Consensus 340 ~v~D~~tg------------k~~~~i~~g~ 357 (368)
T d1mdah_ 340 DIYDAASD------------QDQSSVELDK 357 (368)
T ss_dssp EEEESSSC------------EEEEECCCCS
T ss_pred EEEECCCC------------CEEEEEECCC
Confidence 99999998 8888887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=1.6e-06 Score=95.92 Aligned_cols=241 Identities=16% Similarity=0.083 Sum_probs=155.5
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc------CCCCeEEEEEeeCCCCEEEEE-ECCCcEEEEECCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG------HTQRVTDMAFFAEDVHLLASA-SVDGRFFIWNITE 289 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~------H~~~V~slaf~s~dg~~LaSg-s~DgtV~IWdl~t 289 (1395)
..-.+++++++|+++++-..++.|++||.+...+..+.. ....-..+++....+.++++. +.++.|.+++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 456899999999988887788999999987655544421 112345666633334444443 344567677654
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
+. . ...+..........+++.+++..+++......+.+++... +. +
T Consensus 102 g~-----------~--~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g--~~-------------------~ 147 (279)
T d1q7fa_ 102 GQ-----------F--VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NV-------------------L 147 (279)
T ss_dssp SC-----------E--EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CE-------------------E
T ss_pred cc-----------c--eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC--ce-------------------e
Confidence 33 1 1112222334455678887776555544455555554321 10 1
Q ss_pred EEE--cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 370 QLV--GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 370 ~~l--~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..+ ..+......+++.+++ +++++....+.|++||. +|+.+.++. ++.. ....|++. ++|+.+++-...
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~-~P~giavD----~~G~i~Vad~~~ 220 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN-YPIGVGIN----SNGEILIADNHN 220 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC-SEEEEEEC----TTCCEEEEECSS
T ss_pred ecccccccccccceeeeccce-eEEeeeccccceeeeec-CCceeeeeccccccc-CCcccccc----cCCeEEEEECCC
Confidence 222 2456678899999988 78888888999999995 677787774 2333 67899998 999877764424
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++.|.+|+. ++ +.+.++....... ....+++.+||.++++. .++.|++|.+...
T Consensus 221 ~~~v~~f~~-~G------------~~~~~~~~~~~~~-------~p~~vav~~dG~l~V~~-~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 221 NFNLTIFTQ-DG------------QLISALESKVKHA-------QCFDVALMDDGSVVLAS-KDYRLYIYRYVQL 274 (279)
T ss_dssp SCEEEEECT-TS------------CEEEEEEESSCCS-------CEEEEEEETTTEEEEEE-TTTEEEEEECSCC
T ss_pred CcEEEEECC-CC------------CEEEEEeCCCCCC-------CEeEEEEeCCCcEEEEe-CCCeEEEEEeeee
Confidence 567999984 34 6777775433211 12358899999877765 6899999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.72 E-value=6.4e-08 Score=115.39 Aligned_cols=79 Identities=8% Similarity=-0.070 Sum_probs=58.3
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-c------------------CCCCeEEEEEee
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-G------------------HTQRVTDMAFFA 267 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-~------------------H~~~V~slaf~s 267 (1395)
..+..+..|.+.+..+.|||||++||+. .++.+++|+..++....+. . +.+....+.| +
T Consensus 102 ~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w-S 179 (470)
T d2bgra1 102 RQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW-S 179 (470)
T ss_dssp TEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE-C
T ss_pred CcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE-C
Confidence 3455677888999999999999999996 4679999999987433221 1 2234556789 9
Q ss_pred CCCCEEEEEECCCc-EEEEEC
Q 039790 268 EDVHLLASASVDGR-FFIWNI 287 (1395)
Q Consensus 268 ~dg~~LaSgs~Dgt-V~IWdl 287 (1395)
|||++|+....|.+ |..|.+
T Consensus 180 PDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 180 PNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TTSSEEEEEEEECTTCCEEEE
T ss_pred CCCCccceeEecCCcCceEEE
Confidence 99999999887654 555544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.71 E-value=9.7e-08 Score=111.85 Aligned_cols=252 Identities=10% Similarity=-0.002 Sum_probs=143.2
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEec------------------------------cCCCCeEEEEEeeCCCCEEEEE-EC
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLR------------------------------GHTQRVTDMAFFAEDVHLLASA-SV 278 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~------------------------------~H~~~V~slaf~s~dg~~LaSg-s~ 278 (1395)
+++|+.+|.|+||++.++. +..+. .|.-......+ .+||++|+.. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~g-tpDGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDG-RYDGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETT-EEEEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecc-cCCCCEEEEEcCC
Confidence 5677889999999998763 22210 12223334444 6789888555 56
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCc-cccccCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGK-GERFSAE 355 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~-~~~~s~~ 355 (1395)
+.+|.+||+.+++ +.++.. ........++|+++++..++.+. ...+-..+...... ...+
T Consensus 93 ~~rVavIDl~t~k--------------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~--- 155 (441)
T d1qnia2 93 NTRVARIRLDIMK--------------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSY--- 155 (441)
T ss_dssp TTEEEEEETTTTE--------------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEE---
T ss_pred CCEEEEEECCCCc--------------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccccc---
Confidence 7899999999886 222222 23445667999999886554443 23222111000000 0000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC--------------------------------------
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL-------------------------------------- 397 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-------------------------------------- 397 (1395)
..+....-........+. -.+....++|+|+| +++++.+.
T Consensus 156 ~~~~~iD~~t~~v~~qI~-v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVI-VDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT 233 (441)
T ss_dssp EEEEEEETTTCSEEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred ceEEeecCccceeeEEEe-cCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence 000000000000011111 22356778888888 55555543
Q ss_pred ---CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 398 ---DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 398 ---Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
++.+.||+......+..+.... ....+.++ |||++++++|..+++|.|||+.+.+... ....+...+
T Consensus 234 v~~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vS----PDGkyl~~~~~~~~tvsv~d~~k~~~~~-~~~~~~~~~--- 303 (441)
T d1qnia2 234 IGDSKVPVVDGRGESEFTRYIPVPK--NPHGLNTS----PDGKYFIANGKLSPTVSVIAIDKLDDLF-EDKIELRDT--- 303 (441)
T ss_dssp CTTCCCCEEECSSSCSSEEEECCBS--SCCCEEEC----TTSCEEEEECTTSSBEEEEEGGGHHHHT-TTSSCGGGG---
T ss_pred eCCCCcEEEEcccCCceEEEEeCCC--CccCceEC----CCCCEEEEeCCcCCcEEEEEeehhhhHh-hccCCcceE---
Confidence 3455666655566777777664 47889999 9999999999999999999997641100 000000111
Q ss_pred EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.++. +.+.......|+++|+.+.+...|..|..|++.
T Consensus 304 ~~~~~------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 304 IVAEP------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEECC------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred EEeec------ccccCcccceecCCceEEEcccccceEEEeccc
Confidence 11111 111111236799999999999999999999985
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=3.9e-06 Score=91.07 Aligned_cols=220 Identities=9% Similarity=0.025 Sum_probs=136.4
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC---cEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG---RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg---tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.|.|.|.+.+....+..+...+..-+| +|||++||-..... .+++.+...+. ......+..
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~w-SPDGk~IAf~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 83 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAW-SPDGSKLAYVTFESGRSALVIQTLANGA---------------VRQVASFPR 83 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCC---------------EEEEECCSS
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEE-CCCCCEEEEEEeeccCcceeeeecccCc---------------eeEEeeeec
Confidence 588888887776667777888999999 99999999775543 36666766554 122334455
Q ss_pred CccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
......|+|++..++....... ...++...... .......+........++.++...+++
T Consensus 84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------------------QIRQVTDGRSNNTEPTWFPDSQNLAFT 144 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------------------CEEECCCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccceecCCCCeeeEeeecCCccceeecccccc-------------------cceeeeeccccccccccccccccceec
Confidence 5667899999998877665332 11111111110 022223344555666778877556666
Q ss_pred EeCCCcE--EEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 395 ASLDGTV--KIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 395 gs~Dg~I--rIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
...+|.. .++++..+. ...+..+.. ......|+ |++.+++.....++...+|...... ..+
T Consensus 145 ~~~~g~~~i~~~~~~~~~-~~~~~~~~~-~~~~~~~s----pdg~~~~~~~~~~~~~~i~~~~~~~----------~~~- 207 (269)
T d2hqsa1 145 SDQAGRPQVYKVNINGGA-PQRITWEGS-QNQDADVS----SDGKFMVMVSSNGGQQHIAKQDLAT----------GGV- 207 (269)
T ss_dssp ECTTSSCEEEEEETTSSC-CEECCCSSS-EEEEEEEC----TTSSEEEEEEECSSCEEEEEEETTT----------CCE-
T ss_pred ccccCCceEeeeeccccc-ceeeecccc-cccccccc----cccceeEEEeecCCceeeeEeeccc----------ccc-
Confidence 6666654 444555543 333444444 67888999 9999998877566666666554430 022
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeC---CCeEEEEEcCCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---KNAIYAIHMDYG 520 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---Dg~I~iWdl~~g 520 (1395)
+ +..... ......|||||++|+..+. ...|++|+++.+
T Consensus 208 ~-~~~~~~---------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 208 Q-VLSSTF---------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp E-ECCCSS---------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred e-EeecCc---------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 2 222221 1234789999999876554 346889998764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.60 E-value=3.7e-06 Score=96.76 Aligned_cols=267 Identities=7% Similarity=-0.062 Sum_probs=146.5
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEec--cCCCCeEEEEEeeCCCCE--EEEEE-CCCcEEEEECCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLR--GHTQRVTDMAFFAEDVHL--LASAS-VDGRFFIWNITE 289 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~--~H~~~V~slaf~s~dg~~--LaSgs-~DgtV~IWdl~t 289 (1395)
...+..++|++++++|++... +.+..|.+... .+..+. ........+++ +++++. ++++. ..++|..+.+..
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~-~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDA-DTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCT-TSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEE-CCCCCEEEEEEecCCCCEEEEeEccC
Confidence 344567899999999988765 56778877643 222221 12234556677 677774 33322 245666665543
Q ss_pred CCCCC-CCc-ccccceEEEEE-EecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 290 GPDEE-DKP-QILGKIVVAIQ-ILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 290 g~~~~-~~~-~~~~~~i~~l~-~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
..... .+. ...+..-.... ........+.++.|+|++++++++..+ +.+.+++....+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~--------------- 181 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE--------------- 181 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE---------------
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCcee---------------
Confidence 21000 000 00001111111 111223345689999999999888765 567676654332210
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee--EE---ec--------------CCCCCCeeEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL--AV---LR--------------PYDGHPVNCV 426 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l--~t---l~--------------~h~~~~V~sV 426 (1395)
................++|+|++..+.++.-.+++|.+||+..+... .. +. .+.. ....+
T Consensus 182 ~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 260 (365)
T d1jofa_ 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY-RADVC 260 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE-EEEEE
T ss_pred eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccC-Cccce
Confidence 00011122345678999999999545566667899999998765422 21 11 0111 35678
Q ss_pred EEeecCCCCCcEEEEEecCCC-----eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CC
Q 039790 427 TFLIGPHPQHIVLITGGPLNR-----ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AG 500 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg-----~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg 500 (1395)
.|+ |||++|+++...+. .|..|++... .............. .+-....+.+++ +|
T Consensus 261 ~~s----pdG~~lyvsnr~~~~~~~~~i~~~~~~~~-----------g~~~~~~~~~~~~~----~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 261 ALT----FSGKYMFASSRANKFELQGYIAGFKLRDC-----------GSIEKQLFLSPTPT----SGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEC----TTSSEEEEEEEESSTTSCCEEEEEEECTT-----------SCEEEEEEEEECSS----CCTTCCCEEECTTCT
T ss_pred EEC----CCCCEEEEEcccCCCccceEEEEEEecCC-----------CceeeEeEeeEEEc----CCCCccEEEecCCCC
Confidence 898 99999988753333 3777776543 01111111110000 000112478887 78
Q ss_pred CEEEEE-eCCCeEEEEEcCC
Q 039790 501 LFLLAN-AKKNAIYAIHMDY 519 (1395)
Q Consensus 501 ~~LaSg-s~Dg~I~iWdl~~ 519 (1395)
++|+.+ ..++.|.+|+++.
T Consensus 322 ~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 322 EWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TEEEEECSSSCEEEEEEEET
T ss_pred CEEEEEeCCCCeEEEEEEeC
Confidence 866555 5789999999865
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=5.5e-06 Score=89.84 Aligned_cols=205 Identities=13% Similarity=0.115 Sum_probs=126.6
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCC---eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLG---NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG---~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IW 285 (1395)
..+..+...+..-+|||||++||...... .+.+.+..++....+..+.+.+....| +++|..|+.... ++...++
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF-SPDGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEE-CTTSSEEEEEECTTSSCEEE
T ss_pred EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeeccccccee-cCCCCeeeEeeecCCcccee
Confidence 44444567788889999999999886543 577778888888888888999999999 899998887654 3333333
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
....... ................++..+..++.+...+ .+..++.....
T Consensus 111 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--------------- 162 (269)
T d2hqsa1 111 VMDLASG-------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--------------- 162 (269)
T ss_dssp EEETTTC-------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------
T ss_pred ecccccc-------------cceeeeeccccccccccccccccceecccccCCceEeeeeccccc---------------
Confidence 3322220 0111122233333456777777666665533 23333322111
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEE-eCCCcEEEE--eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASA-SLDGTVKIW--DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg-s~Dg~IrIW--Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+..+........|+|++ ..++.. ...+...+| |...+.. .+..+.+ ......|+ |||++|
T Consensus 163 ------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~~p~~S----PDG~~i 228 (269)
T d2hqsa1 163 ------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLA----PNGTMV 228 (269)
T ss_dssp ------CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEEC----TTSSEE
T ss_pred ------ceeeeccccccccccccccc-ceeEEEeecCCceeeeEeecccccc--eEeecCc-cccceEEC----CCCCEE
Confidence 22333456667788999999 555544 445554554 4444433 3333444 67889999 999998
Q ss_pred EEEecC--CCeEEEEECCCC
Q 039790 440 ITGGPL--NRELKIWASAEE 457 (1395)
Q Consensus 440 ~s~Gs~--Dg~I~IWDl~tg 457 (1395)
+..... ...|.+|++..+
T Consensus 229 ~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 229 IYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp EEEEEETTEEEEEEEETTSC
T ss_pred EEEEcCCCCcEEEEEECCCC
Confidence 765422 356888998765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.58 E-value=2e-06 Score=93.97 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=141.1
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
..-.++++.++|++.++. +.++.|..++........+. +-......|++ .++++++++....+.|++++-.++.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav-~~~g~i~v~d~~~~~i~~~~~~~~~--- 89 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAV-DGAGTVYVTDFNNRVVTLAAGSNNQ--- 89 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEE-CTTCCEEEEETTTEEEEECTTCSCC---
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEE-cCCCCEEEeeeeeceeeeeeeccce---
Confidence 345799999999966654 45577877776655333222 21234678899 7889988887777777766554433
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-c
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-G 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~ 373 (1395)
.+ ...........+++.+++..+++-...+.+.+++...... ..+ .
T Consensus 90 -----------~~-~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~---------------------~~~~~ 136 (260)
T d1rwia_ 90 -----------TV-LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---------------------TVLPF 136 (260)
T ss_dssp -----------EE-CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC---------------------EECCC
T ss_pred -----------ee-eeeeeeeecccccccccceeEeecccccccccccccccee---------------------eeeee
Confidence 11 1111223456788888876444333345555554422111 111 0
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
.-......++++++| +++++...++.|..||.............-. ....|++. ++|.++++ ...++.|..++
T Consensus 137 ~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d----~~g~l~vs-d~~~~~i~~~~ 209 (260)
T d1rwia_ 137 TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVD----EAGTVYVT-EHNTNQVVKLL 209 (260)
T ss_dssp CSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEEC----TTCCEEEE-ETTTTEEEEEC
T ss_pred cccCCcceeeecCCC-CEeeeccccccccccccccceeeeeeccccC-CCccceee----eeeeeeee-ecCCCEEEEEe
Confidence 112345789999988 7888888889999999765543332223334 68999998 88877666 44788888887
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.... . ...+.. .. . .....++++++|.++++...+++|+.++
T Consensus 210 ~~~~------------~-~~~~~~-~~-~------~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 210 AGST------------T-STVLPF-TG-L------NTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp TTCS------------C-CEECCC-CS-C------CCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCCC------------e-EEEEcc-CC-C------CCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 6543 1 111111 10 0 0113588999999998888888665443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.58 E-value=2.1e-06 Score=96.05 Aligned_cols=208 Identities=9% Similarity=-0.013 Sum_probs=132.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.++..+++++||+++++...++.|+.||... ....+......+.+++| .++|+++++...++.+.+|+......
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~-~~dG~l~v~~~~~~~~~~~~~~~~~~---- 101 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAF-TSNGDLVATGWNADSIPVVSLVKSDG---- 101 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEE-CTTSCEEEEEECTTSCEEEEEECTTS----
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEE-cCCCCeEEEecCCceEEEEEeccccc----
Confidence 3688999999999999999999999998664 45556667788999999 89999999998999999988765431
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
....+. ..........+++.+++..++.-...+.+.+++..... ...+....... ........
T Consensus 102 ------~~~~~~-~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~ 164 (302)
T d2p4oa1 102 ------TVETLL-TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLA---------RSNSESVF 164 (302)
T ss_dssp ------CEEEEE-ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGS---------CSSTTCCS
T ss_pred ------ceeecc-ccCCccccceeEEccCCCEEeeccccccceeeeccCCc-ceeEecCCccc---------eeeccCcc
Confidence 011111 11233446678888888544444445666666543221 10000000000 00001122
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee---EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL---AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l---~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
..+..+++.. ..++++.+..+.|..+|+...... ..+.. .. ....++|. ++|.++++.. .++.|..|+
T Consensus 165 ~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~pdgia~d----~dG~l~va~~-~~~~V~~i~ 235 (302)
T d2p4oa1 165 PAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QT-NIDDFAFD----VEGNLYGATH-IYNSVVRIA 235 (302)
T ss_dssp CSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SC-CCSSEEEB----TTCCEEEECB-TTCCEEEEC
T ss_pred cccccccccC--CceeeecCCCCeEEeccccccccccccccccC-CC-CCcceEEC----CCCCEEEEEc-CCCcEEEEC
Confidence 3456677754 367777888899998887654322 22222 22 57889998 9998777654 788899887
Q ss_pred CCC
Q 039790 454 SAE 456 (1395)
Q Consensus 454 l~t 456 (1395)
...
T Consensus 236 p~G 238 (302)
T d2p4oa1 236 PDR 238 (302)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.53 E-value=1.8e-05 Score=88.95 Aligned_cols=249 Identities=8% Similarity=0.050 Sum_probs=150.7
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCCCCEEEEEEC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLK-------LGNIRILNIITALRSLLRG-----HTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~-------DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
++...-....+.+|.++|+++++... +|.|..||..++....+.. ..+.-..|+| .++++.|+++..
T Consensus 12 ~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~-~~dg~~l~vad~ 90 (314)
T d1pjxa_ 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC-DRDANQLFVADM 90 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE-CSSSSEEEEEET
T ss_pred EeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEE-eCCCCEEEEEEC
Confidence 33444455678899999997776432 4679999998886443322 1234567999 888988888888
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----------------eEEEEE
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----------------RILKID 342 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----------------~ii~~d 342 (1395)
.+.|..+|...+.......... +..-.....+++.++|. ++++.... .+++++
T Consensus 91 ~~~i~~~~~~g~~~~~~~~~~~----------g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 91 RLGLLVVQTDGTFEEIAKKDSE----------GRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp TTEEEEEETTSCEEECCSBCTT----------SCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCeEEEEeCCCcEEEEEecccc----------ccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEe
Confidence 7789999877543100000000 00011245688888875 44433221 122211
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC----cEEEEEeCCCcEEEEeCCCCceeE-----
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT----TRLASASLDGTVKIWDDRKSTPLA----- 413 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~----~~LaSgs~Dg~IrIWDl~sg~~l~----- 413 (1395)
. ++ ....+...-..-+.++|++++. .++++-+..+.|..||+.....+.
T Consensus 160 ~-----------dg-----------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~ 217 (314)
T d1pjxa_ 160 T-----------DG-----------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp T-----------TS-----------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred e-----------cC-----------ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE
Confidence 1 00 0111222233457899998763 255666678889999876432222
Q ss_pred -EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccce
Q 039790 414 -VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQ 492 (1395)
Q Consensus 414 -tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~ 492 (1395)
.+.+........+++. .+|+.+++.. ..+.|.+||...+ ..+..+....... .
T Consensus 218 ~~~~~~~~~~pdGiavD----~~GnlyVa~~-~~g~I~~~dp~~g------------~~~~~i~~p~~~~---------t 271 (314)
T d1pjxa_ 218 GHIPGTHEGGADGMDFD----EDNNLLVANW-GSSHIEVFGPDGG------------QPKMRIRCPFEKP---------S 271 (314)
T ss_dssp EECCCCSSCEEEEEEEB----TTCCEEEEEE-TTTEEEEECTTCB------------SCSEEEECSSSCE---------E
T ss_pred EEccccccccceeeEEe----cCCcEEEEEc-CCCEEEEEeCCCC------------EEEEEEECCCCCE---------E
Confidence 2222211145789998 8998777654 6889999998776 5555565543322 2
Q ss_pred EEEEeCCCC-EEEEEeCCCeEEEEEcCC
Q 039790 493 VVALNRAGL-FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 493 ~l~~S~dg~-~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++|.+|++ ++++.+.+|.|+.+++..
T Consensus 272 ~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 588999986 667777889888888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.42 E-value=0.00011 Score=82.33 Aligned_cols=236 Identities=6% Similarity=-0.037 Sum_probs=143.2
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECC--Cc--EEEEECCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVD--GR--FFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--gt--V~IWdl~t 289 (1395)
....+.+++|.++|++.++-..+|.|+.|+..++. ...+.........|+| .++|+++++...+ .. |...+...
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~-~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI-HKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE-CTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEE-CCCCCEEEEecCCCccceeEEEEcCCC
Confidence 34456789999999977777788999999988875 3444556667899999 8899888776433 23 44444443
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-------CeEEEEEcCCCCccccccCCCCCccCc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-------NRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-------~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
+.. ..+............+++.++|. ++++... +.+.+++...
T Consensus 117 ~~~------------~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg----------------- 166 (319)
T d2dg1a1 117 DNL------------QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF----------------- 166 (319)
T ss_dssp CSC------------EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-----------------
T ss_pred cee------------eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc-----------------
Confidence 320 01110111223345688888886 4444322 1233332210
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEe-------cCCCCCCeeEEEEeecCCC
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVL-------RPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl-------~~h~~~~V~sV~fs~~~~p 434 (1395)
..+..+...-...+.|+|++++..++++-+..+.|..||+.. +...... ..... ....+++. .
T Consensus 167 ----~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~-~PdGl~vD----~ 237 (319)
T d2dg1a1 167 ----RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSCCID----S 237 (319)
T ss_dssp ----CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEEEEB----T
T ss_pred ----ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc-ceeeeeEc----C
Confidence 002222223345678999999844566667789999999764 2222111 11112 46789998 8
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+|++.++.. .++.|.+||- .+ +.+.++........ ......+++|.+++..++...
T Consensus 238 ~G~l~Va~~-~~g~V~~~~p-~G------------~~l~~i~~P~~~~~---~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 238 DDNLYVAMY-GQGRVLVFNK-RG------------YPIGQILIPGRDEG---HMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TCCEEEEEE-TTTEEEEECT-TS------------CEEEEEECTTGGGT---CSCBCCEEEECTTSCEEEEEE
T ss_pred CCCEEEEEc-CCCEEEEECC-CC------------cEEEEEeCCCcCCC---cCceeeeEEEeCCCCEEEEEc
Confidence 998777655 7899999995 56 77888876543221 122334688888777666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.37 E-value=2.1e-05 Score=90.24 Aligned_cols=181 Identities=13% Similarity=0.054 Sum_probs=101.9
Q ss_pred CeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEEEE-EecCCCCCccEEEEeCCCCeEEEEEeC-
Q 039790 259 RVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVAIQ-ILADGDSVHPRVCWHPHKQEILMLAIG- 335 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-~~~~~~~~v~~v~~sp~~~~lla~g~~- 335 (1395)
.+.++.| +++|++|++++. ...|++|++.... .....-. ...........++|+|+++.++++...
T Consensus 146 h~h~v~~-sPdG~~l~v~d~g~d~v~~~~~~~~g----------~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~ 214 (365)
T d1jofa_ 146 GIHGMVF-DPTETYLYSADLTANKLWTHRKLASG----------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp CEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTS----------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cceEEEE-CCCCCEEEEeeCCCCEEEEEEccCCC----------ceeeccceeecCCCCceEEEEECCCCceEEEeccCC
Confidence 4789999 999998888764 3478888765432 1111111 122234556789999999988888865
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCC-----cEEEEeCCCC
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDG-----TVKIWDDRKS 409 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg-----~IrIWDl~sg 409 (1395)
+.+..|+.... ....+.......+..............+......+.|+||| ++|+++. .+. .|..|++...
T Consensus 215 ~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~ 292 (365)
T d1jofa_ 215 NRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp TEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred CEEEEEEecCC-CceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCC
Confidence 45555554321 11000000000000000000000011233456789999999 5655543 232 3777776543
Q ss_pred ceeEE------ecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEECCCC
Q 039790 410 TPLAV------LRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 410 ~~l~t------l~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..+.. ..... .....++|+ | +|++|++++..++.|.+|+++..
T Consensus 293 g~~~~~~~~~~~~~~G-~~p~~i~~~----p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 293 GSIEKQLFLSPTPTSG-GHSNAVSPC----PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEEECSSCC-TTCCCEEEC----TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CceeeEeEeeEEEcCC-CCccEEEec----CCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 22221 11222 367889998 7 79999998888999999987653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.33 E-value=2.6e-05 Score=86.77 Aligned_cols=194 Identities=10% Similarity=0.078 Sum_probs=121.9
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+......+.+++|++||++++++..++.+.+|+.... ....+ .......+.+++ .++++++++.+.++.|+.+|.
T Consensus 63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~-~~~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEE-ccCCCEEeeccccccceeeec
Confidence 3345577899999999999999988899988887653 22222 234556889999 889999999888999999998
Q ss_pred CCCCCCCCCcccccceEEEEEEec-------CCC--CCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILA-------DGD--SVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~-------~~~--~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
..+.. .+.... ... .....+.+. +..++.+.. .+.+.+++....+...
T Consensus 142 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~------- 199 (302)
T d2p4oa1 142 VQPSG-------------SIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPG------- 199 (302)
T ss_dssp TTTEE-------------EEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBC-------
T ss_pred cCCcc-------------eeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccccccc-------
Confidence 87641 111110 011 122334443 445555544 5667777664432210
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCCeeEEEEeecCCCC
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL--RPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl--~~h~~~~V~sV~fs~~~~pd 435 (1395)
....+. +......++|.++| +++++...++.|..|+.. |+..... ...-. ..++|+|... .+|
T Consensus 200 ----------~~~~~~-~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~-~pt~vafg~~-~~D 264 (302)
T d2p4oa1 200 ----------EPEIFV-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQT-EGD 264 (302)
T ss_dssp ----------CCEEEE-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCS-TTT
T ss_pred ----------cccccc-CCCCCcceEECCCC-CEEEEEcCCCcEEEECCC-CCEEEEEecCCCCC-CceEEEEcCC-CCC
Confidence 011111 23345679999999 788888889999999865 4433333 22222 6899999411 168
Q ss_pred CcEEEEEe
Q 039790 436 HIVLITGG 443 (1395)
Q Consensus 436 g~~L~s~G 443 (1395)
++.|.++.
T Consensus 265 ~~~Lyvtt 272 (302)
T d2p4oa1 265 CTAIYVVT 272 (302)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEC
Confidence 88776644
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.22 E-value=3.2e-05 Score=84.12 Aligned_cols=195 Identities=10% Similarity=-0.043 Sum_probs=123.2
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
...+++++++|+++++...++.|++++-.++.............+|++ .++++++++-..+..+.+++......
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iav-d~~g~i~v~d~~~~~~~~~~~~~~~~----- 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQ----- 131 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCSSC-----
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccc-cccceeEeecccccccccccccccee-----
Confidence 346788999999888877777777766555443322333456889999 78888887766666677777654330
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
. ............+++++++..+++....+.+.+++...... .......-.
T Consensus 132 --------~-~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--------------------~~~~~~~~~ 182 (260)
T d1rwia_ 132 --------T-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------------------VVLPFTDIT 182 (260)
T ss_dssp --------E-ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--------------------EECCCSSCC
T ss_pred --------e-eeeecccCCcceeeecCCCCEeeecccccccccccccccee--------------------eeeeccccC
Confidence 0 01111223446789999887555555566777776533211 111113445
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
....|++.++| +++++....+.|..++..... ...+....-.....|++. ++|..+++ ...++.|+.++.
T Consensus 183 ~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d----~~g~l~va-d~~~~rI~~i~~ 252 (260)
T d1rwia_ 183 APWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVD----SDRTVYVA-DRGNDRVVKLTS 252 (260)
T ss_dssp SEEEEEECTTC-CEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEEC----TTCCEEEE-EGGGTEEEEECC
T ss_pred CCccceeeeee-eeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEe----CCCCEEEE-ECCCCEEEEEeC
Confidence 67899999998 788888888889888865443 333322211267899998 88877666 336676665554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=0.00024 Score=83.97 Aligned_cols=107 Identities=15% Similarity=0.282 Sum_probs=70.1
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCceEE-eccC---CCCeEEEEEeeCCCCEEEEEE---------CCCcEEEEECCC
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITALRSL-LRGH---TQRVTDMAFFAEDVHLLASAS---------VDGRFFIWNITE 289 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~~~~-l~~H---~~~V~slaf~s~dg~~LaSgs---------~DgtV~IWdl~t 289 (1395)
.|.+++.++. -..+|.|.+||+.++.... +..+ .-.+....| ++|+++|+... ..+.+.|||+.+
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI-SPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE-CTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEE-CCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 4777877654 3567899999999885433 3222 235777888 99999887764 357889999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcC
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN 344 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~ 344 (1395)
+... .+.........+....|+|+|..++.+. ++.+...+..
T Consensus 101 ~~~~------------~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 101 GDPQ------------SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp CCCE------------ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred Ccee------------eccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 8621 1111112233445688999999876654 5566665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.07 E-value=7e-05 Score=80.89 Aligned_cols=101 Identities=8% Similarity=0.062 Sum_probs=68.3
Q ss_pred EEecC--CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CC-----cEEEEECCCCCCCC
Q 039790 223 QIAVN--RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DG-----RFFIWNITEGPDEE 294 (1395)
Q Consensus 223 a~Spd--g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-Dg-----tV~IWdl~tg~~~~ 294 (1395)
.++|| |++||..+ +|.|.+.|+.++....|..+.+.+...+| +|||++|+.... ++ .|++++..++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~-SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARF-FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEE-CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEE-CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 36898 99998875 46788889999988888888889999999 999999886543 22 37777877765110
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
.. .. -..............|+|++..++.+.
T Consensus 83 lt---~~-----~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 IT---YF-----SGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CC---CC-----CEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred ee---ec-----CCCccCccccccccccCCCCCEEEEEE
Confidence 00 00 000011122345678999998776653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.05 E-value=0.00014 Score=81.36 Aligned_cols=202 Identities=11% Similarity=0.106 Sum_probs=127.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCC-----CCeEEEEEeeCCCCEEEEEEC--------------
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHT-----QRVTDMAFFAEDVHLLASASV-------------- 278 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~-----~~V~slaf~s~dg~~LaSgs~-------------- 278 (1395)
.-.++.|.++|+.|+++...+.|..+|.+++....+.... ...++++| .++|++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~-d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE-CCCCCEEEecCccCcccccccceecc
Confidence 4578999999998888877778999998876544332221 13678999 888888776432
Q ss_pred -CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC----eEEEEE-eCCeEEEEEcCCCCccccc
Q 039790 279 -DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ----EILMLA-IGNRILKIDSNRVGKGERF 352 (1395)
Q Consensus 279 -DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~----~lla~g-~~~~ii~~d~~~~~~~~~~ 352 (1395)
+|.|+.++.. ++ ..... ..-...+.++|++++. .++++. ..+.|.+++....+....
T Consensus 151 ~~G~v~~~~~d-g~-----------~~~~~----~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~- 213 (314)
T d1pjxa_ 151 KFGSIYCFTTD-GQ-----------MIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN- 213 (314)
T ss_dssp SCEEEEEECTT-SC-----------EEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-
T ss_pred CCceEEEEeec-Cc-----------eeEee----CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce-
Confidence 2234333322 22 11111 1111234688888764 354443 356777777543221100
Q ss_pred cCCCCCccCccccccceEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 353 SAEEPLKCPVDELINGVQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
......+.+ +......+++..+| +++++....+.|.+||...+..+..+..... .+++|+|.
T Consensus 214 -------------~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg-- 276 (314)
T d1pjxa_ 214 -------------KKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFK-- 276 (314)
T ss_dssp -------------EEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEEC--
T ss_pred -------------eeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEe--
Confidence 000111111 22345679999998 7878877889999999988888887776654 78999998
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCC
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+|++.|+.+.+.++.|...++..
T Consensus 277 --~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 277 --PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --TTSSEEEEEETTTTEEEEEECSS
T ss_pred --CCCCEEEEEECCCCcEEEEECCC
Confidence 89986666565788888888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.04 E-value=0.00082 Score=74.95 Aligned_cols=195 Identities=12% Similarity=0.046 Sum_probs=118.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEc----CCeEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECC------C
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLK----LGNIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVD------G 280 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~----DG~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~D------g 280 (1395)
.......+++|++||+++++... .+.|...+..++....+..+ .....++++ .++|++.++.... +
T Consensus 79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g 157 (319)
T d2dg1a1 79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLG 157 (319)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE-EeccceeecccccccccCcc
Confidence 34456889999999998776543 23455555555544433322 235788999 8899877664321 2
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
.++.++...+. +..+ ...-...+.++|+++++.++++.. .+.|.+++....+...
T Consensus 158 ~v~~~~~dg~~------------~~~~---~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~--------- 213 (319)
T d2dg1a1 158 GVYYVSPDFRT------------VTPI---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI--------- 213 (319)
T ss_dssp EEEEECTTSCC------------EEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE---------
T ss_pred eeEEEecccce------------eEEE---eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee---------
Confidence 34444443322 1111 111123456999999987766654 5778888764332210
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec------CCCCCCeeEEEEeecCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR------PYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~------~h~~~~V~sV~fs~~~~ 433 (1395)
...................|++..+| ++.++....+.|.+|| ..|+.+..+. ++.. .+++++|.
T Consensus 214 ---~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~-~~~~~~~~---- 283 (319)
T d2dg1a1 214 ---QPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHML-RSTHPQFI---- 283 (319)
T ss_dssp ---EEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSC-BCCEEEEC----
T ss_pred ---ccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCc-eeeeEEEe----
Confidence 00000011111122335679999998 7888888899999999 5798888875 3333 68899998
Q ss_pred CCCcEEEEEe
Q 039790 434 PQHIVLITGG 443 (1395)
Q Consensus 434 pdg~~L~s~G 443 (1395)
+++..++++.
T Consensus 284 ~~~~~~~~t~ 293 (319)
T d2dg1a1 284 PGTNQLIICS 293 (319)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEc
Confidence 7776666544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.87 E-value=0.0036 Score=67.94 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=120.7
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC---CCccEEEEeCCCCeEEEEEeC
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD---SVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~---~~v~~v~~sp~~~~lla~g~~ 335 (1395)
.-..|++ .++++++++-...+.|++||.. |+ .+..+....... .....+.+..+...++++...
T Consensus 24 ~P~gvav-d~dg~i~VaD~~n~rI~v~d~~-G~-----------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 90 (279)
T d1q7fa_ 24 EPSGVAV-NAQNDIIVADTNNHRIQIFDKE-GR-----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 90 (279)
T ss_dssp CEEEEEE-CTTCCEEEEEGGGTEEEEECTT-SC-----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CccEEEE-cCCCCEEEEECCCCEEEEEeCC-CC-----------EEEEecccCCCcccccccccccccccccccceeccC
Confidence 4678999 7889988887778899999865 44 111211111111 112345555555544444432
Q ss_pred -CeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE
Q 039790 336 -NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA 413 (1395)
Q Consensus 336 -~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~ 413 (1395)
+..+...... +.. ...+ .........+++.++| .++++....+.+.++| ..++.+.
T Consensus 91 ~~~~i~~~~~~-g~~-------------------~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~-~~g~~~~ 148 (279)
T d1q7fa_ 91 PTHQIQIYNQY-GQF-------------------VRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFD-QNGNVLH 148 (279)
T ss_dssp GGCEEEEECTT-SCE-------------------EEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEEC-TTSCEEE
T ss_pred Ccccccccccc-ccc-------------------eeecCCCcccccceeccccCC-cEEEEeeccceeeEec-cCCceee
Confidence 2222222211 110 1222 2244567889999988 7777777778888888 4577777
Q ss_pred Eec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccc
Q 039790 414 VLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 414 tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
++. .+.. ....+++. ++|..+++. ...+.|++||... +.+.++-..... ...
T Consensus 149 ~~g~~~~~~-~~~~i~~d----~~g~i~v~d-~~~~~V~~~d~~G-------------~~~~~~g~~g~~-------~~P 202 (279)
T d1q7fa_ 149 KFGCSKHLE-FPNGVVVN----DKQEIFISD-NRAHCVKVFNYEG-------------QYLRQIGGEGIT-------NYP 202 (279)
T ss_dssp EEECTTTCS-SEEEEEEC----SSSEEEEEE-GGGTEEEEEETTC-------------CEEEEESCTTTS-------CSE
T ss_pred ccccccccc-ccceeeec----cceeEEeee-ccccceeeeecCC-------------ceeeeecccccc-------cCC
Confidence 763 3333 78889998 888776664 4889999999643 556665321111 112
Q ss_pred eEEEEeCCCCEEEEEeC-CCeEEEEEc
Q 039790 492 QVVALNRAGLFLLANAK-KNAIYAIHM 517 (1395)
Q Consensus 492 ~~l~~S~dg~~LaSgs~-Dg~I~iWdl 517 (1395)
..+++.++|+++++... ++.|.+|+-
T Consensus 203 ~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 203 IGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred cccccccCCeEEEEECCCCcEEEEECC
Confidence 35899999999988764 456888873
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.87 E-value=0.00056 Score=73.42 Aligned_cols=229 Identities=8% Similarity=0.012 Sum_probs=119.0
Q ss_pred CCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc-C-----CeEEEEECCCCceE
Q 039790 180 GRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK-L-----GNIRILNIITALRS 251 (1395)
Q Consensus 180 Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~-D-----G~IrIWd~~~~~~~ 251 (1395)
|+.+ ..++.+|.++.. +...+.+..+.+.+....|||||++||.... + +.|.+++..++...
T Consensus 12 G~~v~f~~~~dl~~~d~~----------~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 12 GDRIIFVCCDDLWEHDLK----------SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp TTEEEEEETTEEEEEETT----------TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCcEEEEECC----------CCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 5555 445567777654 1234556677788889999999999998653 2 24778888888766
Q ss_pred EeccCC-------CCeEEEEEeeCCCCEEEEEECC------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCcc
Q 039790 252 LLRGHT-------QRVTDMAFFAEDVHLLASASVD------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHP 318 (1395)
Q Consensus 252 ~l~~H~-------~~V~slaf~s~dg~~LaSgs~D------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~ 318 (1395)
.+..+. ..+....| +++|+.|+..... ..+.+++...+. .... .....
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~~~~~- 142 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGF-DPDGNLIISTDAMQPFSSMTCLYRVENDGIN---------------FVPL--NLGPA- 142 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEE-CTTCCEEEEECTTSSSTTCCEEEEEEGGGTE---------------EEEC--CSCSC-
T ss_pred EeeecCCCccCcccccccccc-CCCCCEEEEEEccCCCccceeeeeecCCCce---------------eEEe--cCCcc-
Confidence 554332 34567888 8999988875432 124444444332 0111 11111
Q ss_pred EEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC
Q 039790 319 RVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD 398 (1395)
Q Consensus 319 ~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D 398 (1395)
.-.|.+++..++....... .....+......................+........++++. ++.....+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 211 (281)
T d1k32a2 143 THILFADGRRVIGRNTFEL---------PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDID 211 (281)
T ss_dssp SEEEEETTEEEEEESCSCC---------TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTT
T ss_pred ceeeecCCCeEEEeecccc---------ceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccc
Confidence 1223333333332221110 000000000000000000001122222344445556666542 44444444
Q ss_pred C--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 399 G--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 399 g--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+ .|.++|+..+.. +.+..+.. .....|+ |||+.|+.. .++.|+++|+.++
T Consensus 212 ~~~~l~~~d~~g~~~-~~lt~~~~--~~~~~~S----pDG~~I~f~--~~~~l~~~d~~~g 263 (281)
T d1k32a2 212 GFGQIYSTDLDGKDL-RKHTSFTD--YYPRHLN----TDGRRILFS--KGGSIYIFNPDTE 263 (281)
T ss_dssp SSCEEEEEETTSCSC-EECCCCCS--SCEEEEE----ESSSCEEEE--ETTEEEEECTTTC
T ss_pred cccceEEEeCCCCce-EEeecCCC--cccccCc----CCCCEEEEE--eCCEEEEEECCCC
Confidence 3 467778766653 44443433 3345688 999998874 4788999999887
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.87 E-value=0.003 Score=69.43 Aligned_cols=191 Identities=12% Similarity=0.096 Sum_probs=121.4
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEEEECC----CcEEEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLASASVD----GRFFIWN 286 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaSgs~D----gtV~IWd 286 (1395)
...+.++++..+|+++++ +.+ .|.++|..++....+... ...++++.+ .++|++.++...+ +.-.+|.
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v-d~~G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEE-CCCCCEEEEeccccccccceeEee
Confidence 457889999999977765 554 588999999876554322 235788888 8888876665432 2345666
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
+..++ . ..+. ..-.....++|++++..++.+.. .+.|.+++....... .. ..
T Consensus 135 ~~~g~-----------~---~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~--~~----------~~ 187 (295)
T d2ghsa1 135 VAKGK-----------V---TKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL--PT----------GK 187 (295)
T ss_dssp EETTE-----------E---EEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC--BS----------SC
T ss_pred ecCCc-----------E---EEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccc--cc----------cc
Confidence 65554 1 1111 11223457899999988777765 456666654321110 00 00
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
......+.+..+....+++..+| ++.++.-..+.|..|| ..|+.+..+.-... .+++++|-. +|.+.|+++
T Consensus 188 ~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~d-p~G~~~~~i~lP~~-~~T~~~FGG---~d~~~LyvT 258 (295)
T d2ghsa1 188 AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYD-TDGNHIARYEVPGK-QTTCPAFIG---PDASRLLVT 258 (295)
T ss_dssp CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEEC-TTCCEEEEEECSCS-BEEEEEEES---TTSCEEEEE
T ss_pred eEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEec-CCCcEeeEecCCCC-ceEEEEEeC---CCCCEEEEE
Confidence 00012223345567889999998 7777776788999999 57888998876554 799999962 566655544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.77 E-value=0.0071 Score=66.27 Aligned_cols=203 Identities=10% Similarity=0.004 Sum_probs=124.0
Q ss_pred EEEEecC-CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 221 GRQIAVN-RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 221 ~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
+-.|.+. +++..+=-..+.|..||..++....+. ....+.++++ ..++.++++ +.+ .|.++|..+++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~-~~dg~l~va-~~~-gl~~~d~~tg~~------- 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAK-ISDSKQLIA-SDD-GLFLRDTATGVL------- 90 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEE-EETTEEEEE-ETT-EEEEEETTTCCE-------
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEE-ecCCCEEEE-EeC-ccEEeeccccee-------
Confidence 4557764 444444446789999999998765543 3457889999 677776665 455 589999998861
Q ss_pred ccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeC------CeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 300 LGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIG------NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 300 ~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+..... .....+.+.+.++|...+..... +.++++.. +. +..
T Consensus 91 -----~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~---g~--------------------~~~ 142 (295)
T d2ghsa1 91 -----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GK--------------------VTK 142 (295)
T ss_dssp -----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TE--------------------EEE
T ss_pred -----eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC---Cc--------------------EEE
Confidence 11111111 12235577888888755544321 11222211 00 112
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ce--eEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS------TP--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg------~~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+...-..-+.++|++++..++++-+..+.|..|++... +. ...+.+..+ ....+++. .+|.+.++.-
T Consensus 143 ~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g-~pdG~~vD----~~GnlWva~~ 217 (295)
T d2ghsa1 143 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCD----AEGHIWNARW 217 (295)
T ss_dssp EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEEC----TTSCEEEEEE
T ss_pred EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccc-cccceEEc----CCCCEEeeee
Confidence 22223356789999998556677777888998886421 11 122333444 67889998 8888766643
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
..+.|..||- .+ +.+..+......
T Consensus 218 -~~g~V~~~dp-~G------------~~~~~i~lP~~~ 241 (295)
T d2ghsa1 218 -GEGAVDRYDT-DG------------NHIARYEVPGKQ 241 (295)
T ss_dssp -TTTEEEEECT-TC------------CEEEEEECSCSB
T ss_pred -CCCceEEecC-CC------------cEeeEecCCCCc
Confidence 6788999995 45 778888776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0045 Score=72.63 Aligned_cols=215 Identities=8% Similarity=0.027 Sum_probs=113.6
Q ss_pred CEEEEEEecCCCEEEEEEc---------CCeEEEEECCCCceEEec---cCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 218 LVLGRQIAVNRNYICYGLK---------LGNIRILNIITALRSLLR---GHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~---------DG~IrIWd~~~~~~~~l~---~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+....|||||++|+.+.. .|.+.|||+.++....+. .....+....| +|||+.||-.. ++.|++.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~w-SPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW-GPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB-CSSTTCEEEEE-TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeee-ccCCceEEEEe-cceEEEE
Confidence 4456679999999888743 578899999998655443 23445667889 99999998876 5689999
Q ss_pred ECCCCCCCCCCcccccceEEE-EEE--e-cCCCCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCC-c----c--cccc
Q 039790 286 NITEGPDEEDKPQILGKIVVA-IQI--L-ADGDSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVG-K----G--ERFS 353 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~-l~~--~-~~~~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~-~----~--~~~s 353 (1395)
+...+.............+.. +.- . ......-..+-|+|+|..|+..-.+.. +-.+...... . . ..|.
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 887765211000000000000 000 0 000011235779999998887765433 2222111110 0 0 0000
Q ss_pred CCCC----CccCccccccc---eEE-----EcccCCCeEEEEEecCCCcEEEEE-eCC---CcEEEEeCCCCceeEEecC
Q 039790 354 AEEP----LKCPVDELING---VQL-----VGKHDGEITELSMCQWLTTRLASA-SLD---GTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 354 ~~~~----~~~~~~~~~~~---~~~-----l~~h~~~V~slafspdg~~~LaSg-s~D---g~IrIWDl~sg~~l~tl~~ 417 (1395)
..+. ..+.+.+...+ ... .......+..+.|++++ ++++.. ..+ ..|.++|..+|++...+..
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e 298 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence 0000 00011111000 000 11123357889999987 555443 323 2588899999987666553
Q ss_pred CCCCCe----eEEEEeecCCCCCcEE
Q 039790 418 YDGHPV----NCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 418 h~~~~V----~sV~fs~~~~pdg~~L 439 (1395)
+...+| ....|+ +||+.+
T Consensus 299 ~~~~wv~~~~~~p~~~----~dg~~~ 320 (465)
T d1xfda1 299 ESEAWLHRQNEEPVFS----KDGRKF 320 (465)
T ss_dssp ECSSCCCCCCCCCEEC----TTSCSE
T ss_pred cCCceEeccCCceeEc----cCCCee
Confidence 332244 345677 888743
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.41 E-value=0.053 Score=57.96 Aligned_cols=231 Identities=12% Similarity=0.008 Sum_probs=133.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCc------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 228 RNYICYGLKLGNIRILNIITAL------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
|.||+.+.. +.|+-.+++... ...+..+...+..|+|...++.++.+-..++.|+..++..+.
T Consensus 1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---------- 69 (263)
T d1npea_ 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------- 69 (263)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----------
T ss_pred CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----------
Confidence 445666544 577777776542 233444555688899943444455555567889988887654
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
...+....-.....++++.-++.++.+.. .+.|.+++...... ..++...-....
T Consensus 70 ----~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~--------------------~~l~~~~l~~p~ 125 (263)
T d1npea_ 70 ----PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--------------------RVLFDTGLVNPR 125 (263)
T ss_dssp ----CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSEE
T ss_pred ----cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE--------------------EEEecccccCCc
Confidence 11222222345667888877777776655 34566665432111 122333345788
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEE--eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIW--DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIW--Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.+++.|..+.++.+-...+..+|| ++............-. ....|++. +.++.|..+....+.|...|+...
T Consensus 126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~-~P~glaiD----~~~~~lYw~d~~~~~I~~~~~~g~- 199 (263)
T d1npea_ 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG-LPNGLTFD----AFSSQLCWVDAGTHRAECLNPAQP- 199 (263)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTEE-
T ss_pred EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc-ccceEEEe----ecCcEEEEEeCCCCEEEEEECCCC-
Confidence 999999875555554333344455 4443333222322223 67899998 777777666557889999998654
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.+...+.+...+ ..+++. ++.+.++....+.|+..|..+|+
T Consensus 200 -----------~~~~v~~~~~~P----------~~lav~-~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 200 -----------GRRKVLEGLQYP----------FAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp -----------EEEEEEECCCSE----------EEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred -----------CeEEEECCCCCc----------EEEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence 333333322111 135553 45566666677888888877653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.15 Score=54.18 Aligned_cols=201 Identities=9% Similarity=-0.009 Sum_probs=127.7
Q ss_pred CCCCEEEEEEecCCCEEEEEE-cCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGL-KLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+...+.+++|...+++|.... .++.|+..+++++... .+......+.+|++....+++.++-...+.|.+.++....+
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 335678899998888777764 5678999898876443 33333457889999333444555656678999999875441
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
..+..........++++|..+.++.+..+. .|.+.+...... .
T Consensus 114 --------------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--------------------~ 159 (263)
T d1npea_ 114 --------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------------------R 159 (263)
T ss_dssp --------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------------------E
T ss_pred --------------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--------------------e
Confidence 112233334567889999998888775442 355555432211 1
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
......-.....|++.+.+.++..+-...+.|...|+........+.+-. ...+|++. +.+|..+...++.|
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~------~~~lYwtd~~~~~I 231 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY------GKNLYYTDWKTNSV 231 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC--SEEEEEEE------TTEEEEEETTTTEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC--CcEEEEEE------CCEEEEEECCCCEE
Confidence 22222334678999998874444555567889999987655444454433 45688885 34454444467888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
...|..++
T Consensus 232 ~~~~~~~g 239 (263)
T d1npea_ 232 IAMDLAIS 239 (263)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88888877
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.24 Score=52.66 Aligned_cols=203 Identities=12% Similarity=-0.007 Sum_probs=124.6
Q ss_pred CCCCEEEEEEecCCCEEEEEE-cCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 215 DPGLVLGRQIAVNRNYICYGL-KLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
....+.+++|.+.+++|.... .++.|+..+++.. ....+...-..+.+|++....+++.++-...++|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 345677899998888777664 4567777776542 2223333345677888833455566666677889999988
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
... ..............++++|..+.++.+..+ ..|.+.+......
T Consensus 108 g~~--------------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------------------ 155 (266)
T d1ijqa1 108 GVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------ 155 (266)
T ss_dssp SSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------------
T ss_pred Cce--------------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------------------
Confidence 544 122233334456789999988888877644 3566665533211
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.......-...+.+++.+.+.++..+-...+.|...|+....+...+..... ....+|++. +.+|..+...
T Consensus 156 --~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~------~~~ly~td~~ 227 (266)
T d1ijqa1 156 --YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF------EDKVFWTDII 227 (266)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE------TTEEEEEETT
T ss_pred --ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE------CCEEEEEECC
Confidence 1222223456789999988745555556678899999865544333333221 146678875 3455554547
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
++.|...+..++
T Consensus 228 ~~~I~~~~~~~g 239 (266)
T d1ijqa1 228 NEAIFSANRLTG 239 (266)
T ss_dssp TTEEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 788888887766
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.35 Score=51.29 Aligned_cols=235 Identities=8% Similarity=-0.046 Sum_probs=133.8
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEE-ECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA-SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSg-s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
||+.+.. ..|+..++++.....+......+.+|+| ....+.|.-. ..++.|+-.++....... ....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~~~~~~~~id~-d~~~~~lYw~D~~~~~I~~~~l~~~~~~~----------~~~~ 70 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDT-EVASNRIYWSDLSQRMICSTQLDRAHGVS----------SYDT 70 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEE-ETTTTEEEEEETTTTEEEEEEC------------------CEE
T ss_pred EEEEECC-CeEEEEECCCCcceeeeCCCCceEEEEE-EeCCCEEEEEECCCCEEEEEEecCCCCCc----------ceEE
Confidence 4555544 3588889988765555556667889999 5555555544 456667777765422000 0112
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+..........+++...++.++.+... +.|.+++...... ...+.........++++|.
T Consensus 71 ~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~--------------------~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--------------------EEEEECTTCCEEEEEEETT
T ss_pred EEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceE--------------------EEEEcCCCCCcceEEEEcc
Confidence 222333455678888888888877654 4455554422111 2223334566889999987
Q ss_pred CCcEEEEEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
.+.++.+.. ..+.|.-.++............-. ....+++. +.+..|..+....+.|...|+...
T Consensus 131 ~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~-~p~gl~iD----~~~~~lYw~d~~~~~I~~~~~dG~--------- 196 (266)
T d1ijqa1 131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG--------- 196 (266)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred cCeEEEeccCCCcceeEeccCCCceecccccccc-eeeEEEee----ccccEEEEecCCcCEEEEEECCCC---------
Confidence 645555532 334566666644433333332223 68899998 777777776667889999998654
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.+...+........ ...+++. ++.++++...++.|+..+...|.
T Consensus 197 ---~~~~~~~~~~~~~~-------p~~lav~-~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 197 ---NRKTILEDEKRLAH-------PFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp ---SCEEEEECTTTTSS-------EEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ---CEEEEEeCCCcccc-------cEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence 33333332221100 0124544 35566666677888888876654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.45 E-value=0.83 Score=51.72 Aligned_cols=209 Identities=14% Similarity=0.087 Sum_probs=106.4
Q ss_pred CCEEEEEEecCCCEEEEEE-cC----CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC------------
Q 039790 217 GLVLGRQIAVNRNYICYGL-KL----GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD------------ 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs-~D----G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D------------ 279 (1395)
-.+.++.+|||+++||++- .+ ..|+++|+.++......-.......++| ..|+..|+-...|
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W-~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW-THDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEE-CTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEE-cCCCCEEEEEEeccccCcccccccc
Confidence 3445677899999999864 33 3699999999964322211122356889 8888877655433
Q ss_pred ----CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC--CCccEEEEeCCCCeEEEEEeCC-----eEEEEEcCCCCc
Q 039790 280 ----GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD--SVHPRVCWHPHKQEILMLAIGN-----RILKIDSNRVGK 348 (1395)
Q Consensus 280 ----gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~--~~v~~v~~sp~~~~lla~g~~~-----~ii~~d~~~~~~ 348 (1395)
..|+.|.+.+..... ..++...+ ..+..+..+.++.+++.....+ .++.++......
T Consensus 204 ~~~~~~v~~h~lgt~~~~d------------~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~ 271 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSED------------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (430)
T ss_dssp CCCCCEEEEEETTSCGGGC------------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cCCcceEEEEECCCCcccc------------ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccc
Confidence 257788887654111 11222222 2344566788888776654421 234444322111
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCce--eEEecC-CCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL---DGTVKIWDDRKSTP--LAVLRP-YDGHP 422 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~---Dg~IrIWDl~sg~~--l~tl~~-h~~~~ 422 (1395)
. . .........+......+.-+. +..+ .+++.... ++.|...++..... ...+-. +.. .
T Consensus 272 ~--~----------~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~-~ 336 (430)
T d1qfma1 272 G--I----------TGILKWVKLIDNFEGEYDYVT-NEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-D 336 (430)
T ss_dssp S--S----------CSSCCCEEEECSSSSCEEEEE-EETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSS-C
T ss_pred c--c----------ccccceeEeecccccceEEEe-cCCc-eeecccCcccccceeEEecCCCCccccceEEecccCc-c
Confidence 0 0 000011223332333333322 2222 34443333 35666667665422 233433 433 3
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCC
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEE 457 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg 457 (1395)
+..-.+. ..+.+|+..-..|+ .|+++++.++
T Consensus 337 ~~~~~~~----~~~~~lvl~~~~~~~~~l~v~~~~~~ 369 (430)
T d1qfma1 337 VLEWVAC----VRSNFLVLCYLHDVKNTLQLHDLATG 369 (430)
T ss_dssp EEEEEEE----ETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred eeeeEEE----EECCEEEEEEEcCCEeEEEEEECCCC
Confidence 4433333 34556665443554 5788888776
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.44 E-value=0.12 Score=57.42 Aligned_cols=76 Identities=7% Similarity=-0.071 Sum_probs=51.4
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC-CeEEEEECCCCceEEecc--CCCCeEEEEEeeCCCCEEEEEECC------CcEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL-GNIRILNIITALRSLLRG--HTQRVTDMAFFAEDVHLLASASVD------GRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D-G~IrIWd~~~~~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~D------gtV~IW 285 (1395)
|...+.+.++.++|++++.|+.+ ..+.+||..+..-..+.. ....-..++. ..||.+++.|+.+ ..+.+|
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEE-CTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceee-ecCCceeeeccccccccccceeeee
Confidence 33444566788999999998765 689999998874332221 1112234455 5789999988753 368999
Q ss_pred ECCCCC
Q 039790 286 NITEGP 291 (1395)
Q Consensus 286 dl~tg~ 291 (1395)
|..+..
T Consensus 153 d~~~~~ 158 (387)
T d1k3ia3 153 SPSSKT 158 (387)
T ss_dssp ETTTTE
T ss_pred cCCCCc
Confidence 998765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.30 E-value=0.61 Score=52.18 Aligned_cols=234 Identities=8% Similarity=-0.012 Sum_probs=129.6
Q ss_pred EEEEec---CCCEEEEEE-cCCeEEEEECCCCceEE--eccCCCCeEEEEEe-eCCCCEEEEEECCC-------------
Q 039790 221 GRQIAV---NRNYICYGL-KLGNIRILNIITALRSL--LRGHTQRVTDMAFF-AEDVHLLASASVDG------------- 280 (1395)
Q Consensus 221 ~va~Sp---dg~~LasGs-~DG~IrIWd~~~~~~~~--l~~H~~~V~slaf~-s~dg~~LaSgs~Dg------------- 280 (1395)
.+.+.- ||+||+... .++.|.+.|+++.+... -......+..++.+ .++..|++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 444543 899998886 57899999999874322 11234456666652 24556777776632
Q ss_pred -----cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 281 -----RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 281 -----tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
.+.++|..+.+ .. .++.-. .....+.++++|+++++++.+... +
T Consensus 169 ~~y~~~~t~ID~~tm~-----------V~--~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~----------g------ 217 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWE-----------VA--WQVLVS--GNLDNCDADYEGKWAFSTSYNSEK----------G------ 217 (459)
T ss_dssp G-EEEEEEEEETTTTE-----------EE--EEEEES--SCCCCEEECSSSSEEEEEESCTTC----------C------
T ss_pred hhcceEEEEEecCCce-----------EE--EEeeeC--CChhccccCCCCCEEEEEeccccC----------C------
Confidence 24566666554 11 222222 234468888888877777643210 0
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEe--------cCCCcEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCCee
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMC--------QWLTTRLASASLDGTVKIWDDRKS---TPLAVLRPYDGHPVN 424 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafs--------pdg~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~ 424 (1395)
.. +.. . .....-+.+.|+ ++|....+ +.+.+-|.+.. ..++.+.-.+ ...
T Consensus 218 --~~--l~e-------~-ta~e~D~i~V~n~~rie~av~~Gk~~ei-----ngV~VVD~~~~~~~~v~~yIPVpK--sPH 278 (459)
T d1fwxa2 218 --MT--LPE-------M-TAAEMDHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIAN--NPH 278 (459)
T ss_dssp --SS--HHH-------H-TCCSEEEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGG--CSSEEEEEEES--SCC
T ss_pred --cc--hhh-------c-ccccceEEEEechHHhHHhhhcCCcEEe-----CCceeecccccCCcceeEEEecCC--CCC
Confidence 00 000 0 011111222222 22311111 34677787652 3344444333 467
Q ss_pred EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE-EEEEeccCcccccccccccceEEEEeCCCCEE
Q 039790 425 CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC-TQTLELKSSAELRLEDAFFNQVVALNRAGLFL 503 (1395)
Q Consensus 425 sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~-l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L 503 (1395)
.|.++ |||++++++|..+.+|.|+|++.-+.+... ...-..+ +... +.+.----..|+..|...
T Consensus 279 GV~vS----PDGKyi~VaGKLs~tVSViD~~Ki~~~~~~-~~~~~~~~~~e~----------elglgPLht~fd~~g~ay 343 (459)
T d1fwxa2 279 GCNMA----PDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NADPRSAVVAEP----------ELGLGPLHTAFDGRGNAY 343 (459)
T ss_dssp CEEEC----TTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-GGGGEEECC----------BCCSCEEEEEECTTSEEE
T ss_pred ceEEC----CCCCEEEEeCCcCCcEEEEEehhhhhhhcc-cCCccccEEeec----------ccCcCccccccCCCceEE
Confidence 78999 999999999999999999999754111100 0000011 1111 111112246788888877
Q ss_pred EEEeCCCeEEEEEcCC
Q 039790 504 LANAKKNAIYAIHMDY 519 (1395)
Q Consensus 504 aSgs~Dg~I~iWdl~~ 519 (1395)
.+---|..|--|++..
T Consensus 344 tslfids~v~kw~~~~ 359 (459)
T d1fwxa2 344 TSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEETTTTEEEEEEHHH
T ss_pred EEeeccceEEEEecch
Confidence 7777999999999863
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.97 E-value=2.8 Score=49.06 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-Eec--c-CC-CCeE--EEEEeeCCCCEEEEEE------CCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLR--G-HT-QRVT--DMAFFAEDVHLLASAS------VDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~--~-H~-~~V~--slaf~s~dg~~LaSgs------~DgtV~IWdl~tg~ 291 (1395)
+..|+.++.||.|.-.|.++|++. .+. . +. ..++ -+.+ ++ .++.+. .+|.|+-+|+.+|+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~---~~-~vivg~~~~~~~~~G~v~a~D~~TG~ 187 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe---CC-eEEEeeccccccccCcEEEEECCCCc
Confidence 456778889999999999998543 111 1 11 1111 1222 33 344444 37789999999998
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.78 E-value=0.43 Score=53.42 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=111.8
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCccccc-------------------ceEEEEE--------EecCCCCCccEEEEeC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILG-------------------KIVVAIQ--------ILADGDSVHPRVCWHP 324 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~-------------------~~i~~l~--------~~~~~~~~v~~v~~sp 324 (1395)
.|.|||..|.|+|+-+-+++.+...+.++. ....... .+..++.-+..+.+..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td 94 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 94 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence 367888899999999888774332221110 0000000 1111233344555543
Q ss_pred ---CCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCC-
Q 039790 325 ---HKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLD- 398 (1395)
Q Consensus 325 ---~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~D- 398 (1395)
||+++|+... +.++-+++....... .+..+ .....+..+....+.. .|++.++.+
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~------------------kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~ 155 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCD------------------AILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDE 155 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEE------------------EEEEC-SSCCSEEEEEECCSSBCSEEEEEECSC
T ss_pred CccceeEEEEEcCCCceEEEEECcceeee------------------EEEec-CCCCCCceeecccCCCeEEEEccCccc
Confidence 6666666664 567777776443211 01111 2334455566554432 366655542
Q ss_pred -----------------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--------------
Q 039790 399 -----------------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR-------------- 447 (1395)
Q Consensus 399 -----------------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg-------------- 447 (1395)
+.+.++|..+.+....+..- + ....+.++ ++|+|+++++ .+.
T Consensus 156 vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g-~ld~~~~s----~dGK~af~Ts-yNSE~g~~l~e~ta~e~ 228 (459)
T d1fwxa2 156 TPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-G-NLDNCDAD----YEGKWAFSTS-YNSEKGMTLPEMTAAEM 228 (459)
T ss_dssp EESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-S-CCCCEEEC----SSSSEEEEEE-SCTTCCSSHHHHTCCSE
T ss_pred cccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-C-ChhccccC----CCCCEEEEEe-ccccCCcchhhcccccc
Confidence 23667898888777666533 2 47789998 9999999876 332
Q ss_pred -eEEEEECCCCCCCCCCCCcccccEEEEEeccCc---ccc-cccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 448 -ELKIWASAEEEGWLLPSDIESWKCTQTLELKSS---AEL-RLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 448 -~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~---~i~-~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
.+.+++....+..+...+-....-+..+..... ... .....-.-..+.++|||+++++++ .+.++-++|++.
T Consensus 229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 234444321100000000000000112221110 000 000000112588999999887666 689999999964
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=2.8 Score=44.45 Aligned_cols=69 Identities=7% Similarity=-0.027 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.+.-.++..++.. .++..-++-|.|.+||+.+|.++..-+--.. .|...+-. .+..-+++.. .+|.|..
T Consensus 255 ~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~----~~~~Gi~~VN-r~GqVl~ 323 (327)
T d1utca2 255 NDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPH----EATAGIIGVN-RKGQVLS 323 (327)
T ss_dssp TCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE----TTTTEEEEEE-TTSEEEE
T ss_pred CCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEEeecCCC-ceEEeccC----CCCceEEEEC-CCCeEEE
Confidence 4556677778776 5888888999999999999999987775554 67655554 4444455556 7776643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.25 E-value=2.4 Score=46.17 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=35.8
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE---EecCCCCCCeeEEEEe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA---VLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~---tl~~h~~~~V~sV~fs 429 (1395)
.-...+.|++++|+..++++-+..++|++|++.....+. .+.- .+ .+-.+.+.
T Consensus 204 ~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l-~~-~pDNi~~d 259 (340)
T d1v04a_ 204 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DT-LVDNISVD 259 (340)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SS-EEEEEEEC
T ss_pred CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC-CC-CCCccEEe
Confidence 345789999999985666777778999999986543222 2221 22 56777775
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.20 E-value=10 Score=44.06 Aligned_cols=110 Identities=8% Similarity=-0.057 Sum_probs=57.2
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceeeec
Q 039790 493 VVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYA 572 (1395)
Q Consensus 493 ~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~ 572 (1395)
..+++|+..++.....+....++......... ..+.. .....+.... .......|.|.-||+.|+++..-.
T Consensus 390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~-~~~~~~~G~l~AiD~~TG~~~W~~ 460 (571)
T d2ad6a1 390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAG-------QFFVG-ATLAMYPGPN-GPTKKEMGQIRAFDLTTGKAKWTK 460 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCCTT-------SCCCC-EEEEEEECTT-STTSCCCEEEEEECTTTCCEEEEE
T ss_pred cceECCCCceEEEeccccccccccccccccCC-------ccccc-cceeeccccC-CcccCCcccEEEeccCCCceeeEc
Confidence 36788888888887776655444332211100 00111 1111111111 111234578999999999875321
Q ss_pred c-c-ceEEecC-CCCCeecccCCCceEEEeecCCCCcceeec
Q 039790 573 L-D-LSQCLPP-PLENAELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 573 ~-~-~~~cl~~-s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
- . ...+-+. ...++.+.++.++.++.+|+.||+.+=..+
T Consensus 461 ~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 461 WEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 1 0 0001011 123444444556888899999999886666
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.16 E-value=3.8 Score=47.78 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.3
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 497 NRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 497 S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...|.+++.|+.||.+|.+|.++|+
T Consensus 466 ~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 466 STAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCC
T ss_pred EECCCEEEEECCCCcEEEEECCCCc
Confidence 3456778889999999999999987
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.89 E-value=5.9 Score=46.17 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.7
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 497 NRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 497 S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+..|.+|++|+.|+.++.||.++|+
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe 509 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGE 509 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEcCCEEEEECCCCeEEEEECCCCc
Confidence 4467788889999999999999987
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.49 E-value=10 Score=40.80 Aligned_cols=74 Identities=7% Similarity=0.001 Sum_probs=50.4
Q ss_pred CCeEEEEEecCCCcEEEEEeC---------------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 377 GEITELSMCQWLTTRLASASL---------------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~---------------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
...++|++..+| .+++|-.. -++..+|....+.......+- . ..+.|+++ ||+++|+.
T Consensus 150 ~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l-~-~pNGI~~s----~d~~~lyV 222 (340)
T d1v04a_ 150 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGF-D-FANGINIS----PDGKYVYI 222 (340)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEE-S-SEEEEEEC----TTSSEEEE
T ss_pred cCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCC-C-ccceeEEC----CCCCEEEE
Confidence 467899999988 67777311 123344444444433333332 2 68999999 99999988
Q ss_pred EecCCCeEEEEECCCC
Q 039790 442 GGPLNRELKIWASAEE 457 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg 457 (1395)
+....+.|++|++...
T Consensus 223 a~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 223 AELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEGGGTEEEEEEECTT
T ss_pred EeCCCCeEEEEEeCCC
Confidence 8888999999998754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.92 E-value=14 Score=40.81 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=101.0
Q ss_pred EEEEEecCCCEEEEEEcC----------------CeEEEEECCCCc---eEEeccCC--CCeEEEEEeeCCCCEEEEEEC
Q 039790 220 LGRQIAVNRNYICYGLKL----------------GNIRILNIITAL---RSLLRGHT--QRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~D----------------G~IrIWd~~~~~---~~~l~~H~--~~V~slaf~s~dg~~LaSgs~ 278 (1395)
..+.|+.|++.|++...| ..|..|.+.+.. ...+.... ..+..+.. +.++++++....
T Consensus 174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~-s~d~~~l~i~~~ 252 (430)
T d1qfma1 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL-SDDGRYVLLSIR 252 (430)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE-CTTSCEEEEEEE
T ss_pred cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec-cCCcceeeEEee
Confidence 357799999999886543 257778887752 34444433 34566666 888888764332
Q ss_pred ---CCcEEEE--ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe----CCeEEEEEcCCCCcc
Q 039790 279 ---DGRFFIW--NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI----GNRILKIDSNRVGKG 349 (1395)
Q Consensus 279 ---DgtV~IW--dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~----~~~ii~~d~~~~~~~ 349 (1395)
++...+| |+....... .. ................ ...+ .+..+++... .+.++..+.......
T Consensus 253 ~~~~~~~~~~~~d~~~~~~~~-----~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~ 324 (430)
T d1qfma1 253 EGCDPVNRLWYCDLQQESNGI-----TG-ILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEES 324 (430)
T ss_dssp CSSSSCCEEEEEEGGGSSSSS-----CS-SCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGG
T ss_pred ccCCccEEEEEeeCCCccccc-----cc-ccceeEeecccccceE-EEec-CCceeecccCcccccceeEEecCCCCccc
Confidence 3334444 544322100 00 0001111222222211 1111 2233433332 234555544322110
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecCCCCCCeeEEE
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVT 427 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~ 427 (1395)
.| ..++..+...+..-.+...+..+++....|+ .|++++...+.....+....+ .|..+.
T Consensus 325 ------------~w-----~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~ 386 (430)
T d1qfma1 325 ------------KW-----KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG-SVVGYS 386 (430)
T ss_dssp ------------GC-----EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS-EEEEEE
T ss_pred ------------cc-----eEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCc-eEeecc
Confidence 01 2334445555554444443423444555665 488999988876555544433 555544
Q ss_pred EeecCCCCCc-EEEEEecC--CCeEEEEECCCC
Q 039790 428 FLIGPHPQHI-VLITGGPL--NRELKIWASAEE 457 (1395)
Q Consensus 428 fs~~~~pdg~-~L~s~Gs~--Dg~I~IWDl~tg 457 (1395)
.. ++.. ..+...|. =.++.-||+.++
T Consensus 387 ~~----~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 387 GQ----KKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp CC----TTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CC----CCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 43 3443 33332322 267888888877
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.85 E-value=13 Score=40.21 Aligned_cols=202 Identities=10% Similarity=0.041 Sum_probs=110.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEe---eCCCC--EEEEEE--CCC--cEEEEECCCCCCCCCC
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFF---AEDVH--LLASAS--VDG--RFFIWNITEGPDEEDK 296 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~---s~dg~--~LaSgs--~Dg--tV~IWdl~tg~~~~~~ 296 (1395)
|+..+|+...+++-|++||++...+..+. .++++.|... .-++. -|+.++ .++ +|.+|.+.....
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~---- 111 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---- 111 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----
T ss_pred cCccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----
Confidence 34567777678878999999866666553 4677777652 11222 244444 223 588888863220
Q ss_pred cccccceEEEEEE----ecCCCCCccEEEE--eCCCC--eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 297 PQILGKIVVAIQI----LADGDSVHPRVCW--HPHKQ--EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 297 ~~~~~~~i~~l~~----~~~~~~~v~~v~~--sp~~~--~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.+..+.. .......++.+|+ ++..+ ++++...++.+..|+....+.+. -....
T Consensus 112 ------~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-------------v~~~l 172 (353)
T d1h6la_ 112 ------TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-------------ISGKK 172 (353)
T ss_dssp ------EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-------------EEEEE
T ss_pred ------ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-------------eeeEe
Confidence 0000000 0111234566776 55544 34555556777777664332210 00111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--C---CceeEEecC-CCCCCeeEEEEeecCCCCCc-EEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--K---STPLAVLRP-YDGHPVNCVTFLIGPHPQHI-VLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--s---g~~l~tl~~-h~~~~V~sV~fs~~~~pdg~-~L~s 441 (1395)
++.+. -...+-.|.+.... ..|..+-.+.-|..++.. . +..+....+ +-..-+-.|+.-.. .++. ||++
T Consensus 173 vr~f~-~~~q~EGCVvDde~-~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~--~~~~Gyliv 248 (353)
T d1h6la_ 173 VRAFK-MNSQTEGMAADDEY-GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYA--ADGKGYLLA 248 (353)
T ss_dssp EEEEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEEC--GGGCEEEEE
T ss_pred eeccC-CCCccceEEEeCCC-CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEc--CCCCeEEEE
Confidence 34443 44578889998887 677777777656555543 1 223323322 22226777775411 2333 6666
Q ss_pred EecCCCeEEEEECCC
Q 039790 442 GGPLNRELKIWASAE 456 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~t 456 (1395)
+.-.|++..|||...
T Consensus 249 SsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 249 SSQGNSSYAIYERQG 263 (353)
T ss_dssp EEGGGTEEEEEESST
T ss_pred EcCCCCeEEEEecCC
Confidence 555789999999865
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.64 E-value=6 Score=46.23 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=55.1
Q ss_pred CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 398 DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 398 Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.|.|.-+|+.+|+.+..+..+. ++.+-..+ ..|..+++ |+.||.++.||..+| +.+-.++.
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~--p~~~g~ls----tagglVF~-Gt~dg~l~A~Da~TG------------e~LW~~~~ 525 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLA----TAGNLVFT-GTGDGYFKAFDAKSG------------KELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEE----ETTTEEEE-ECTTSEEEEEETTTC------------CEEEEEEC
T ss_pred CCeEEEEcCCCCcEEeecCCCC--CCccceeE----EcCCeEEE-eCCCCeEEEEECCCC------------cEeEEEEC
Confidence 3678899999999988887543 33332233 35667776 569999999999999 88888886
Q ss_pred cCcccccccccccceEEEEeCCCCE
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
....... -+.+..+|+.
T Consensus 526 ~~~~~~~--------P~ty~~~G~q 542 (582)
T d1flga_ 526 GSGIVSP--------PITWEQDGEQ 542 (582)
T ss_dssp SSCCCSC--------CEEEEETTEE
T ss_pred CCCcccc--------CEEEEECCEE
Confidence 6543322 2666778863
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=89.49 E-value=23 Score=41.02 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-Eecc---CCC-CeE-EEEEeeCCCCEEEEEEC------CCcEEEEECCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRG---HTQ-RVT-DMAFFAEDVHLLASASV------DGRFFIWNITEGPD 292 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~---H~~-~V~-slaf~s~dg~~LaSgs~------DgtV~IWdl~tg~~ 292 (1395)
+.+|+.++.||.|.-.|..+|++. .+.. +.. .++ .-.+ .+..++.+.. .|.|+-+|+.+|+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~ 194 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQ 194 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcE
Confidence 457888899999999999998533 2211 111 111 1111 1334555543 48899999999983
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=88.91 E-value=1.5 Score=48.00 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=69.8
Q ss_pred EEecCCCcEEEEEeCCC-----------cEEEEeCCCCce--eEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 383 SMCQWLTTRLASASLDG-----------TVKIWDDRKSTP--LAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg-----------~IrIWDl~sg~~--l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+...+| ++++.|+.+. .+.+||..++.- +..+. .|.. ....+++. ++|.+++.+|.....
T Consensus 26 ~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~----~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 26 IEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMD----GNGQIVVTGGNDAKK 99 (387)
T ss_dssp EETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-SSCEEEEC----TTSCEEEECSSSTTC
T ss_pred EEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc-ceeEEEEe----cCCcEEEeecCCCcc
Confidence 334455 7777777531 377999988642 22222 3332 45667787 899999887755579
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK------NAIYAIHMDYG 520 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D------g~I~iWdl~~g 520 (1395)
+.+||..+. .|.....+. . .-....++...||++++.|+.+ +.+.+||..++
T Consensus 100 ~~~yd~~~~----------~w~~~~~~~--~--------~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 100 TSLYDSSSD----------SWIPGPDMQ--V--------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEEEGGGT----------EEEECCCCS--S--------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eeEecCccC----------ccccccccc--c--------cccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 999999875 222111111 0 0112356777899999988753 35888988764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.40 E-value=17 Score=38.14 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=114.2
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
-.+|..+.||.-+ ..++.|||+++..+..-......|.--.|- +.+.|+-.+. ..|+-|+++... .
T Consensus 69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s-~--------- 134 (327)
T d1utca2 69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGES-Q--------- 134 (327)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEECS-SEEEEEESSSSC-C---------
T ss_pred hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEcC-CceEEEcccCCC-C---------
Confidence 3578888888776 468999999998544333345577777783 3445555544 479999995422 0
Q ss_pred eEEEEEEecCCC----CCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 303 IVVAIQILADGD----SVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 303 ~i~~l~~~~~~~----~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
..+.+..|. ..+-....+++.++++.+|- ++.+. |....|+.+.. ..+.+.||
T Consensus 135 ---P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~-------G~mQLYS~er~----------~sQ~ieGh 194 (327)
T d1utca2 135 ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV-------GAMQLYSVDRK----------VSQPIEGH 194 (327)
T ss_dssp ---CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE-------EEEEEEETTTT----------EEEEECCS
T ss_pred ---chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCcee-------EEEEEEEeccC----------cCccccce
Confidence 123333332 33444556777777777764 22211 11122222221 14566667
Q ss_pred CCCeEEEEEecCC--CcEEEEEe---CCCcEEEEeCCCCc---e---eE--Ee-cCC--CCCCeeEEEEeecCCCCCcEE
Q 039790 376 DGEITELSMCQWL--TTRLASAS---LDGTVKIWDDRKST---P---LA--VL-RPY--DGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 376 ~~~V~slafspdg--~~~LaSgs---~Dg~IrIWDl~sg~---~---l~--tl-~~h--~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.+.-..+.+.-.. ..+|+-+. ..+++.|-++.... . .+ .+ -.. .++-..++..+ .....+
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs----~kygii 270 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVV 270 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE----TTTTEE
T ss_pred eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee----ccCCEE
Confidence 6544444332111 12333333 23678888876521 1 11 11 111 12255677777 333333
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
.... .-|.|++||+.++ .|+..-+.....
T Consensus 271 yviT-K~G~i~lyDleTg------------t~i~~nRIs~~~ 299 (327)
T d1utca2 271 FLIT-KYGYIHLYDLETG------------TCIYMNRISGET 299 (327)
T ss_dssp EEEE-TTSEEEEEETTTC------------CEEEEEECCSSC
T ss_pred EEEe-cCcEEEEEEcccc------------cEEEEeecCCCc
Confidence 3334 7899999999998 888776655443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.43 E-value=22 Score=38.28 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=85.3
Q ss_pred eEEEEECCC--CceEEeccC-------CCCeEEEEEe--eCCCC-EEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 239 NIRILNIIT--ALRSLLRGH-------TQRVTDMAFF--AEDVH-LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 239 ~IrIWd~~~--~~~~~l~~H-------~~~V~slaf~--s~dg~-~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|.+|.+.. +.+..+... ...|+.+|+. ..++. +++....+|.+..|.+.....- ......+
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g----~v~~~lv-- 173 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG----YISGKKV-- 173 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----SEEEEEE--
T ss_pred eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC----ceeeEee--
Confidence 577887753 233333221 2347788873 23454 5677778999999987542200 0111222
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slaf 384 (1395)
+.+. ....+..|.+....+.|+++-.+.++.++......... ..-+.... .....+-.|++
T Consensus 174 -r~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~---------------~~~i~~~~g~~l~~D~EGlai 236 (353)
T d1h6la_ 174 -RAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSN---------------GTVIDRADGRHLTPDIEGLTI 236 (353)
T ss_dssp -EEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSC---------------CEEEEECSSSSCCSCEEEEEE
T ss_pred -eccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCcc---------------ceeeecccCccccCCccccEE
Confidence 2222 23456688999998889988888888776643211100 00011111 13456666664
Q ss_pred e--cCCC-cEEEEEeCCCcEEEEeCCCC-ceeEEec
Q 039790 385 C--QWLT-TRLASASLDGTVKIWDDRKS-TPLAVLR 416 (1395)
Q Consensus 385 s--pdg~-~~LaSgs~Dg~IrIWDl~sg-~~l~tl~ 416 (1395)
- .++. .+|||.-.|++..|||.... ..+..|.
T Consensus 237 y~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 237 YYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 3 2332 45555556889999997653 5555554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.87 E-value=1.9 Score=50.73 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 399 g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
|.|.-||+.+|+.+..++... +..+=..+ -.|..|++ |+.|+.++.||..+| +.+-+++..
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~--p~~gg~ls----tagglVF~-G~~dg~l~A~Da~TG------------e~LW~~~~~ 517 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS--PWNGGTLT----TAGNVVFQ-GTADGRLVAYHAATG------------EKLWEAPTG 517 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS--SCCCCEEE----ETTTEEEE-ECTTSEEEEEETTTC------------CEEEEEECS
T ss_pred ccEEEeCCCCCceEeeecCCC--CCCCceEE----EcCCEEEE-ECCCCeEEEEECCCC------------cEeEEEECC
Confidence 578889999999888776443 22211122 24667776 559999999999999 888888776
Q ss_pred CcccccccccccceEEEEeCCCC
Q 039790 479 SSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
...... -+.|..+|+
T Consensus 518 ~~~~~~--------P~ty~~~Gk 532 (573)
T d1kb0a2 518 TGVVAA--------PSTYMVDGR 532 (573)
T ss_dssp SCCCSC--------CEEEEETTE
T ss_pred CCcccc--------CEEEEECCE
Confidence 543322 255566776
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.41 E-value=17 Score=40.67 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=37.6
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc---------CCCCeEEEEEe
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG---------HTQRVTDMAFF 266 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~---------H~~~V~slaf~ 266 (1395)
.-..-++++|.+||++|++--..|.|++++..++....+.+ -.+...+|+|+
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~ 85 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFH 85 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEEC
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeC
Confidence 34677899999999988876557999999988874332221 12457889993
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.94 E-value=26 Score=34.59 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEecc----------CCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRG----------HTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEED 295 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~----------H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~ 295 (1395)
|.+..++|+......+|-++.|.+..+.. ..+.|..+.|...+..-|.++.. .|.++|++...|.
T Consensus 113 dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS---- 188 (313)
T d2hu7a1 113 GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS---- 188 (313)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEE----
T ss_pred CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCc----
Confidence 44567788777788899999886554432 12345556665555444555555 6777777766554
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
++...+.+.. .+ +++.. ...+.+|... ++-. +..-+-+-
T Consensus 189 ---------------------~~~ay~~~gn-KV-~sdyEt~gEsywit~D~~s-~~ye-------------rve~P~kd 231 (313)
T d2hu7a1 189 ---------------------FSSASISPGM-KV-TAGLETAREARLVTVDPRD-GSVE-------------DLELPSKD 231 (313)
T ss_dssp ---------------------EEEEEECTTS-CE-EEEEEESSCEEEEEECTTT-CCEE-------------ECCCSSCH
T ss_pred ---------------------ccceeEccCc-ee-eeccCCCCceEEEEEeccc-Ccee-------------eeecCccc
Confidence 2223333332 33 22221 1122222211 1100 00000000
Q ss_pred Ec-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+. -..-.|+-+-+.|++ ++++.+-.||.-++|+ +|+.+.+-. + .+..+..- ++....+..|...--+
T Consensus 232 ~~sy~p~~I~~~~Y~Pdd-~L~iiakrdG~s~lF~--nGk~in~p~---G-~~~gat~i-----~~~iyfshsSL~tP~k 299 (313)
T d2hu7a1 232 FSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI--DGERVEAPQ---G-NHGRVVLW-----RGKLVTSHTSLSTPPR 299 (313)
T ss_dssp HHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE--TTEEECCCS---S-EEEEEEEE-----TTEEEEEEEETTEEEE
T ss_pred ceeecceEEEeeeeCCCC-cEEEEEecCCchheee--cceEecCCC---C-cccceEEE-----CCEEEEeecccCCCce
Confidence 00 022346667799998 7889999999999997 465544433 3 33333332 3444444444555556
Q ss_pred EEECCCC
Q 039790 451 IWASAEE 457 (1395)
Q Consensus 451 IWDl~tg 457 (1395)
|..+.++
T Consensus 300 I~~~~~~ 306 (313)
T d2hu7a1 300 IVSLPSG 306 (313)
T ss_dssp EEEETTC
T ss_pred eEEcCCC
Confidence 6666555
|