Citrus Sinensis ID: 039794


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MWLVLILAFFFFSEIVTWLLESSALLVNPCPSSGRTAESAEYKPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHcccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEc
cHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccHcHcEHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEc
MWLVLILAFFFFSEIVTWLLESSallvnpcpssgrtaesaeykplpgkqtrnlqKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLhvpvsvgvfpyeaiGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIdadslwdlyswsswpsaaatfgmtfspsmsvvefylpngfpvpYALYFIAVAFIAAFTGTYIMNNMidktgrkslitfdih
MWLVLILAFFFFSEIVTWLLESSALLVNPCPSSGRTaesaeykplpgkqtrnlqkvtILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDktgrkslitfdih
MWLVLILAFFFFSEIVTWLLESSALLVNPCPSSGRTAESAEYKPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIdadslwdlyswsswpsAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
*WLVLILAFFFFSEIVTWLLESSALLVNP**********************NLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITF***
MWLVLILAFFFFSEIVTWL***************************************LENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLY***************CSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
MWLVLILAFFFFSEIVTWLLESSALLVNPC************KPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
MWLVLILAFFFFSEIVTWLLESSALLVN************EYKPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWLVLILAFFFFSEIVTWLLESSALLVNPCPSSGRTAESAEYKPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITFDIH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
224143011 474 predicted protein [Populus trichocarpa] 0.940 0.464 0.480 2e-44
255551044 465 conserved hypothetical protein [Ricinus 0.897 0.451 0.481 5e-44
224092328 479 predicted protein [Populus trichocarpa] 0.854 0.417 0.497 2e-41
225430021 478 PREDICTED: uncharacterized protein LOC10 0.854 0.418 0.463 4e-41
297821995 479 hypothetical protein ARALYDRAFT_481426 [ 0.854 0.417 0.453 3e-40
255549968 483 conserved hypothetical protein [Ricinus 0.854 0.414 0.454 5e-40
224143013 448 predicted protein [Populus trichocarpa] 0.940 0.491 0.464 5e-40
30682879 476 Sulfite exporter TauE/SafE family protei 0.854 0.420 0.448 9e-40
255551046 476 conserved hypothetical protein [Ricinus 0.940 0.462 0.457 3e-39
356518316 477 PREDICTED: uncharacterized protein LOC10 0.935 0.459 0.458 6e-39
>gi|224143011|ref|XP_002324817.1| predicted protein [Populus trichocarpa] gi|222866251|gb|EEF03382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 147/235 (62%), Gaps = 15/235 (6%)

Query: 11  FFSEIVTWLLES--SALLVNPCPSSGRTAESAEYKPLPGKQTRN---LQKVTILENIRWK 65
           FF  + TW +E+    +      S+G + E  EYKPLP  Q  +     KVTIL+NI WK
Sbjct: 199 FFKGLDTWKIETILKEVAAKRFESTGGS-EEVEYKPLPDGQGNDPPKASKVTILQNIYWK 257

Query: 66  ELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIAS 125
           ELG L F+ ++YL  QIAKN+TA  S+ + VLN L +P+S+GVF YEAIGLY+G R I+S
Sbjct: 258 ELGLLVFVWVSYLAVQIAKNYTAPCSTTFWVLNLLQIPISIGVFLYEAIGLYKGRRRISS 317

Query: 126 KGEESRNCSLQQLAQWCACGIVAGLLGIDADS-----LWDLYSWSSWP----SAAATFGM 176
           KG+E  +  + +L  +  CG+VAG++G          +  L+     P    S  ATFGM
Sbjct: 318 KGDEIMDWQVHRLLMFSVCGVVAGIVGGLLGIGGGFVMGPLFLEMGIPPQVSSGTATFGM 377

Query: 177 TFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITF 231
            FS SMSVVE+YL + FPVPYALYFIAVA IAAF G  I+  +I  +GR SLI F
Sbjct: 378 LFSSSMSVVEYYLLDRFPVPYALYFIAVAVIAAFIGQNIITKLITISGRASLIIF 432




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551044|ref|XP_002516570.1| conserved hypothetical protein [Ricinus communis] gi|223544390|gb|EEF45911.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224092328|ref|XP_002309560.1| predicted protein [Populus trichocarpa] gi|222855536|gb|EEE93083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430021|ref|XP_002284175.1| PREDICTED: uncharacterized protein LOC100267889 [Vitis vinifera] gi|296081886|emb|CBI20891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297821995|ref|XP_002878880.1| hypothetical protein ARALYDRAFT_481426 [Arabidopsis lyrata subsp. lyrata] gi|297324719|gb|EFH55139.1| hypothetical protein ARALYDRAFT_481426 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255549968|ref|XP_002516035.1| conserved hypothetical protein [Ricinus communis] gi|223544940|gb|EEF46455.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224143013|ref|XP_002324818.1| predicted protein [Populus trichocarpa] gi|222866252|gb|EEF03383.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30682879|ref|NP_850068.1| Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] gi|22531098|gb|AAM97053.1| unknown protein [Arabidopsis thaliana] gi|25083770|gb|AAN72117.1| unknown protein [Arabidopsis thaliana] gi|26450521|dbj|BAC42374.1| unknown protein [Arabidopsis thaliana] gi|28951043|gb|AAO63445.1| At2g25737 [Arabidopsis thaliana] gi|330252652|gb|AEC07746.1| Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255551046|ref|XP_002516571.1| conserved hypothetical protein [Ricinus communis] gi|223544391|gb|EEF45912.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356518316|ref|XP_003527825.1| PREDICTED: uncharacterized protein LOC100810784 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:504956017476 AT2G25737 [Arabidopsis thalian 0.854 0.420 0.439 1.4e-39
TAIR|locus:2040605459 AT2G36630 [Arabidopsis thalian 0.893 0.455 0.324 1.8e-20
TAIR|locus:504956017 AT2G25737 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 94/214 (43%), Positives = 127/214 (59%)

Query:    32 SSGRTAESAEYKPLPGKQTRN-----LQKVTILENIRWKELGFLSFIRLAYLVPQIAKNH 86
             S+G +    EY PLP   + N      ++V+I+EN+ WKELG L F+ + +L  QI+K +
Sbjct:   222 SNGVSGTEVEYVPLPAAPSTNPGNKKKEEVSIIENVYWKELGLLVFVWIVFLALQISKQN 281

Query:    87 TATFSSAYQVLNSLHVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGI 146
              A  S AY V+N L +PV+VGV  YEA+ LY+G R+IASKG+   N ++ QL  +C  GI
Sbjct:   282 LANCSVAYWVINLLQIPVAVGVSGYEAVALYQGRRIIASKGQGDSNFTVGQLVMYCTFGI 341

Query:   147 VAGLLG---------IXXXXXXXXXXXXXXXXAAATFGMTFSPSMSVVEFYLPNGFPVPY 197
             +AG++G         I                A ATF MTFS SMSVVE+YL   FPVPY
Sbjct:   342 IAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPY 401

Query:   198 ALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITF 231
             ALY + VA IAA+ G +++  +I   GR SLI F
Sbjct:   402 ALYLVGVATIAAWVGQHVVRRLIAAIGRASLIIF 435




GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2040605 AT2G36630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
PF01925240 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002 99.33
PRK10621266 hypothetical protein; Provisional 99.24
COG0730258 Predicted permeases [General function prediction o 99.21
COG0730 258 Predicted permeases [General function prediction o 98.96
PRK10621 266 hypothetical protein; Provisional 98.94
PF01925 240 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002 98.4
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised Back     alignment and domain information
Probab=99.33  E-value=7.1e-12  Score=108.40  Aligned_cols=90  Identities=22%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             HHHH-HHHhhhhhccCccEE-----E-EcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHH---HHHHHHHHH
Q 039794          140 QWCA-CGIVAGLLGIDADSL-----W-DLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALY---FIAVAFIAA  209 (234)
Q Consensus       140 ~~~~-~G~laGLlGIGGG~i-----l-~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~---~~~~~~~ga  209 (234)
                      .+.+ .|+++|++|+|||.+     . ..|.+||++.||+.+++++++.++...|+..|.+|++...+   ...++++|+
T Consensus       131 ~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~  210 (240)
T PF01925_consen  131 LGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGA  210 (240)
T ss_pred             hhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence            4455 999999999999986     2 36999999999999999999999999999999999997776   899999999


Q ss_pred             HHHHHHHHHhhHhhCceeEE
Q 039794          210 FTGTYIMNNMIDKTGRKSLI  229 (234)
Q Consensus       210 ~~G~~~~~~l~~k~gR~SiI  229 (234)
                      .+|+++.+|+.++.-|+.+.
T Consensus       211 ~lG~~~~~~i~~~~~~~~~~  230 (240)
T PF01925_consen  211 FLGAKLARKIPQKVFRRIFL  230 (240)
T ss_pred             HHHHHHHHhCCHHHHHHHHH
Confidence            99999999998877665443



; GO: 0016021 integral to membrane

>PRK10621 hypothetical protein; Provisional Back     alignment and domain information
>COG0730 Predicted permeases [General function prediction only] Back     alignment and domain information
>COG0730 Predicted permeases [General function prediction only] Back     alignment and domain information
>PRK10621 hypothetical protein; Provisional Back     alignment and domain information
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00