Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 113
TIGR01160 110
TIGR01160, SUI1_MOF2, translation initiation facto
9e-59 cd11566 84
cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
7e-50 pfam01253 74
pfam01253, SUI1, Translation initiation factor SUI
3e-21 COG0023 104
COG0023, SUI1, Translation initiation factor 1 (eI
2e-19 cd00474 78
cd00474, eIF1_SUI1_like, Eukaryotic initiation fac
3e-15 cd11608 85
cd11608, eIF2D_C, C-terminal domain of eIF2D and r
2e-11 cd11607 86
cd11607, DENR_C, C-terminal domain of DENR and rel
4e-09 PRK00939 99
PRK00939, PRK00939, translation initiation factor
6e-08 TIGR01158 101
TIGR01158, SUI1_rel, translation initation factor
2e-07 cd11567 76
cd11567, YciH_like, Homologs of eIF1/SUI1 includin
4e-06
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic
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Score = 175 bits (446), Expect = 9e-59
Identities = 69/110 (62%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Query: 5 DTQIPSAFDPFAEANAEDSGAGS-KDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDL 63
Q +FDPFA+A +DS +Y+HIR+QQRNGRK+LTTVQGL KE+ KI+K L
Sbjct: 1 SIQNLKSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKAL 60
Query: 64 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113
KKEF CNGTV++DPE+G+VIQLQGDQRKNV FL+ G++KK+ IKIHGF
Sbjct: 61 KKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
Back Show alignment and domain information
Score = 152 bits (387), Expect = 7e-50
Identities = 59/84 (70%), Positives = 70/84 (83%)
Query: 29 DYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
Y+HIR+QQRNGRK+LTTVQGL +EF KILK KKEF CNGTVV+DPE G+VIQLQGD
Sbjct: 1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60
Query: 89 QRKNVSTFLVQAGIVKKEFIKIHG 112
QRKN+ FL++ GI KK+ IK+HG
Sbjct: 61 QRKNIKEFLLEEGIAKKDNIKVHG 84
eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1
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Score = 79.9 bits (198), Expect = 3e-21
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 25 AGSKDYVHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVI 83
+ IR ++R G K++T V GL K+ K+LKK+F C GTV G+ I
Sbjct: 1 KKEDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKD----GEEI 56
Query: 84 QLQGDQRKNVSTFLVQAG 101
++QGD R V L + G
Sbjct: 57 EIQGDHRDKVKDLLEKEG 74
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
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Score = 76.2 bits (188), Expect = 2e-19
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 5 DTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDL 63
T P E + V IR + R K++T ++GL K+ K+ K+L
Sbjct: 4 STICGRIGLPKELTCEEVA-KEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKEL 62
Query: 64 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIH 111
KK+ C GTV I++QGD R V L++ G K + I I
Sbjct: 63 KKKCACGGTVKDG-----EIEIQGDHRDKVKELLIKKGF-KVKNIGIE 104
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins
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Score = 64.4 bits (157), Expect = 3e-15
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 31 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90
+HI+V+QR+G K +T V+GL K+ +LKK+ C G+V I++QGD
Sbjct: 2 IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVE---GEKMEIEIQGDHT 58
Query: 91 KNVSTFLVQAGIVKKEFIKIH 111
+ L + GI K +++
Sbjct: 59 DQIIVALEEKGIDKDW-VELL 78
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins
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Score = 54.9 bits (133), Expect = 2e-11
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 31 VHIRVQQRNGRKSLTTVQGLK------KEFSYNKILKDLKKEFCCNGTVVQDPEL--GQV 82
+ I ++R G K +T + GL+ +EF+ K+L+K+ + +V P G
Sbjct: 2 IDITTERRQGNKKVTLISGLESFGIDPEEFA-----KELQKKCAASTSVSPLPGKKKGVE 56
Query: 83 IQLQGDQRKNVSTFLVQAGIVKKEFIKI 110
+Q+QG+Q K V+ L + V K++I
Sbjct: 57 VQVQGNQVKFVAKLLTEKYGVPKKYIDG 84
eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins
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Score = 49.1 bits (118), Expect = 4e-09
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 31 VHIRVQQRNGRKSLTTVQGLKK-EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89
V I+ RN RK +TTV GL+ K K K+F C +V + E I +QGD
Sbjct: 3 VTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGDV 62
Query: 90 RKNVSTFLV-QAGIVKKEFIKI 110
++ ++ + + ++ I+I
Sbjct: 63 TDDIVDLILEKWPEIDEDNIEI 84
DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed
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Score = 46.5 bits (111), Expect = 6e-08
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 31 VHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89
+ I+V +R K +T ++G+ K+ ++ K LK + C GTV I+LQGD
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG-----RIELQGDH 80
Query: 90 RKNVSTFLVQAG 101
R+ V L++ G
Sbjct: 81 RERVKELLIKMG 92
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic
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Score = 45.0 bits (107), Expect = 2e-07
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 33 IRVQ-QRNGR--KSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
+R+Q + GR K +T ++GL + ++ K+LK + C GTV VI++QGD
Sbjct: 26 VRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG-----VIEIQGD 80
Query: 89 QRKNVSTFLVQAG 101
R V L + G
Sbjct: 81 HRDRVKDLLEKKG 93
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH
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Score = 41.3 bits (98), Expect = 4e-06
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 31 VHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
V +R+++R G K++T ++GL E ++ K+LKK+ C GTV I+LQGD
Sbjct: 3 VRVRLEKRGRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVKDG-----EIELQGD 57
Query: 89 QRKNVSTFLVQAGIVKK 105
R+ + L + G K
Sbjct: 58 HREKIKELLEKKGFKVK 74
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
113
TIGR01160 110
SUI1_MOF2 translation initiation factor SUI1, euka
100.0 KOG1770 112
consensus Translation initiation factor 1 (eIF-1/S
100.0 COG0023 104
SUI1 Translation initiation factor 1 (eIF-1/SUI1)
99.96 cd00474 77
SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac
99.96 PF01253 83
SUI1: Translation initiation factor SUI1; InterPro
99.95 PRK00939 99
translation initiation factor Sui1; Reviewed
99.93 TIGR01159 173
DRP1 density-regulated protein DRP1. This protein
99.92 TIGR01158 101
SUI1_rel translation initation factor SUI1, putati
99.91 PRK09019 108
translation initiation factor Sui1; Validated
99.9 PRK07451 115
translation initiation factor Sui1; Validated
99.9 PRK06824 118
translation initiation factor Sui1; Validated
99.89 KOG3239 193
consensus Density-regulated protein related to tra
99.73 KOG2522 560
consensus Filamentous baseplate protein Ligatin, c
99.69 PF05046 87
Img2: Mitochondrial large subunit ribosomal protei
98.38 KOG4034 169
consensus Uncharacterized conserved protein NOF (N
96.92 PRK14451 89
acylphosphatase; Provisional
93.7 PRK03988 138
translation initiation factor IF-2 subunit beta; V
93.1 PRK14434 92
acylphosphatase; Provisional
93.02 PRK14443 93
acylphosphatase; Provisional
92.45 TIGR00311 133
aIF-2beta translation initiation factor aIF-2, bet
92.21 PRK14450 91
acylphosphatase; Provisional
91.64 PRK14444 92
acylphosphatase; Provisional
91.21 PRK14420 91
acylphosphatase; Provisional
90.93 PRK14426 92
acylphosphatase; Provisional
90.71 smart00653 110
eIF2B_5 domain present in translation initiation f
90.31 PRK14432 93
acylphosphatase; Provisional
90.09 PRK14422 93
acylphosphatase; Provisional
89.98 PRK14429 90
acylphosphatase; Provisional
89.3 PRK14431 89
acylphosphatase; Provisional
88.64 PRK14433 87
acylphosphatase; Provisional
88.37 PRK14437 109
acylphosphatase; Provisional
88.28 PRK14427 94
acylphosphatase; Provisional
88.27 PRK14435 90
acylphosphatase; Provisional
87.75 PRK14425 94
acylphosphatase; Provisional
87.65 PRK14439 163
acylphosphatase; Provisional
87.2 PRK14428 97
acylphosphatase; Provisional
87.18 PRK14442 91
acylphosphatase; Provisional
87.1 PRK14423 92
acylphosphatase; Provisional
86.82 PF00708 91
Acylphosphatase: Acylphosphatase; InterPro: IPR001
86.59 PRK14445 91
acylphosphatase; Provisional
86.53 PRK14440 90
acylphosphatase; Provisional
86.23 PRK14448 90
acylphosphatase; Provisional
85.76 PRK14452 107
acylphosphatase; Provisional
85.74 PRK14436 91
acylphosphatase; Provisional
85.67 PRK14449 90
acylphosphatase; Provisional
85.33 PRK14446 88
acylphosphatase; Provisional
85.25 PRK12336 201
translation initiation factor IF-2 subunit beta; P
85.12 PRK14421 99
acylphosphatase; Provisional
84.92 PRK14424 94
acylphosphatase; Provisional
84.68 PRK14438 91
acylphosphatase; Provisional
84.67 PRK14441 93
acylphosphatase; Provisional
83.67 PRK14447 95
acylphosphatase; Provisional
83.6 PRK14430 92
acylphosphatase; Provisional
82.36
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic
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Probab=100.00 E-value=3.1e-37 Score=214.81 Aligned_cols=108 Identities=64% Similarity=1.083 Sum_probs=97.7
Q ss_pred cccCCCCCCCcccccccCCCCC-CCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeE
Q 039810 4 FDTQIPSAFDPFAEANAEDSGA-GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQV 82 (113)
Q Consensus 4 ~~~~~~~~~d~~~~~~~~~~~~-~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~ 82 (113)
++++. .||||+++..++.-. .....||||+++|+|||.||+|+||+..+|+++|||.||++|||||||+++++++++
T Consensus 2 ~~~~~--~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNLK--SFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred ccccc--CCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 46655 599999986655322 467789999999999999999999998899999999999999999999998888899
Q ss_pred EEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 83 IQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 83 I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
|+||||||++|++||.++||.+++||+||||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999989999999997
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=100.00 E-value=2.3e-36 Score=207.81 Aligned_cols=111 Identities=66% Similarity=1.017 Sum_probs=103.7
Q ss_pred CCccccCCCCCCCcccccccC-CCCCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCC
Q 039810 1 MSEFDTQIPSAFDPFAEANAE-DSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL 79 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~ 79 (113)
|+.++++. +||||+++.+. +...+....||||+++|+|||++|+|+|++.++|++.+++.|||.|||+|++.++|+.
T Consensus 1 e~~iq~~~--~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNLE--DFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccchh--hcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 45677755 89999999887 4478888899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 80 GQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 80 g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
|++|+||||||.+|.+||...|+.+++||+||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.96 E-value=1.3e-29 Score=174.77 Aligned_cols=93 Identities=32% Similarity=0.508 Sum_probs=81.4
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh
Q 039810 12 FDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90 (113)
Q Consensus 12 ~d~~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~ 90 (113)
.+|++.... ++.+...+.|+|++++|++||.||+|+||+ +++|+++||++||++|||||||++ .+|+||||||
T Consensus 11 ~~p~e~~~~-~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-----~~IeiQGdhr 84 (104)
T COG0023 11 GLPKELTCE-EVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-----GEIEIQGDHR 84 (104)
T ss_pred CCchHHhhh-hcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----CEEEEeChHH
Confidence 567665422 223444899999999999999999999999 899999999999999999999996 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEec
Q 039810 91 KNVSTFLVQAGIVKKEFIKIH 111 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ih 111 (113)
++|.++|.++|| +.++|.+|
T Consensus 85 ~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 85 DKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred HHHHHHHHHcCC-chhhcccC
Confidence 999999999999 66799876
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation
Back Show alignment and domain information
Probab=99.96 E-value=4.3e-29 Score=164.17 Aligned_cols=76 Identities=54% Similarity=0.841 Sum_probs=72.4
Q ss_pred eEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCe
Q 039810 30 YVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFI 108 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I 108 (113)
.|+|++++|++||.||+|+||+ +.+|++++||.||++||||||+++ .+|+||||||++|+++|.++||+. +||
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~~~-~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGFAK-DNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCCCH-HHe
Confidence 3899999999999999999999 888999999999999999999985 699999999999999999999976 899
Q ss_pred Eec
Q 039810 109 KIH 111 (113)
Q Consensus 109 ~ih 111 (113)
+||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 999
This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []
Back Show alignment and domain information
Probab=99.95 E-value=2e-27 Score=157.30 Aligned_cols=81 Identities=41% Similarity=0.719 Sum_probs=69.0
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
+++.++|+|++++|+|||.||+|+||+ |++|+++||++|+++||||||+.+++..+.+|+|||||++.|.++|.++|++
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~ 80 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGI 80 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSS
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCC
Confidence 367889999999999999999999999 9999999999999999999999988755789999999999999999999885
Q ss_pred CC
Q 039810 104 KK 105 (113)
Q Consensus 104 ~~ 105 (113)
++
T Consensus 81 ~k 82 (83)
T PF01253_consen 81 PK 82 (83)
T ss_dssp E-
T ss_pred CC
Confidence 53
SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
>PRK00939 translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=3.3e-26 Score=156.83 Aligned_cols=79 Identities=33% Similarity=0.609 Sum_probs=72.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
+.+.+.|+|++++|+|||.||+|+||+ +++|+++|||.||++||||||+++ ++|+||||||++|+++|.++||+
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~~ 94 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGFS 94 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999 999999999999999999999974 57999999999999999999994
Q ss_pred CCCCeE
Q 039810 104 KKEFIK 109 (113)
Q Consensus 104 ~~~~I~ 109 (113)
.+||.
T Consensus 95 -~~~i~ 99 (99)
T PRK00939 95 -EENIE 99 (99)
T ss_pred -hhhcC
Confidence 56773
>TIGR01159 DRP1 density-regulated protein DRP1
Back Show alignment and domain information
Probab=99.92 E-value=9.7e-25 Score=162.31 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~--G 101 (113)
++..++|+|++++|+|||.||+|+||+ |++|++++||.|+++||||+||.+++.++.+|+|||||++.|.++|.++ +
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999 9999999999999999999999988888899999999999999999884 6
Q ss_pred CCCCCCeEe
Q 039810 102 IVKKEFIKI 110 (113)
Q Consensus 102 ~~~~~~I~i 110 (113)
+ ++++|..
T Consensus 165 v-~e~~I~~ 172 (173)
T TIGR01159 165 V-GDKDIKD 172 (173)
T ss_pred C-CHHHeee
Confidence 6 5677753
This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Probab=99.91 E-value=2.1e-24 Score=148.33 Aligned_cols=75 Identities=31% Similarity=0.546 Sum_probs=70.2
Q ss_pred CCCCCeEEEEEEee-cCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 039810 25 AGSKDYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~ 102 (113)
+.+.+.|+|++++| +|+|.||+|+||+ +..|++++||.||++||||||+++ .+|+|||||+++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 34789999999998 8999999999999 899999999999999999999974 5999999999999999999999
Q ss_pred CC
Q 039810 103 VK 104 (113)
Q Consensus 103 ~~ 104 (113)
+.
T Consensus 95 ~~ 96 (101)
T TIGR01158 95 KV 96 (101)
T ss_pred Ce
Confidence 54
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
>PRK09019 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=1.8e-23 Score=145.27 Aligned_cols=75 Identities=28% Similarity=0.473 Sum_probs=67.4
Q ss_pred CCCCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 24 GAGSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
++...+.|+|+.++ ++++|.||+|+||+ ...|+++|||.||++|||||||++ ++|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577888888775 45778999999999 899999999999999999999985 599999999999999999999
Q ss_pred CC
Q 039810 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 101 f~ 102 (108)
T PRK09019 101 MK 102 (108)
T ss_pred Ce
Confidence 93
>PRK07451 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=2.6e-23 Score=145.81 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 24 GAGSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
++.+.+.|+|++++ ++++|.||+|+||+ ++.|+++|||.||++||||||+++ ++|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 56678888888764 56789999999999 889999999999999999999975 589999999999999999999
Q ss_pred CC
Q 039810 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 108 f~ 109 (115)
T PRK07451 108 YK 109 (115)
T ss_pred Ce
Confidence 93
>PRK06824 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.89 E-value=4.1e-23 Score=145.42 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=67.1
Q ss_pred CCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 26 GSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 26 ~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
...+.|+|++++ |+++|.||+|+||+ ...|+++|||.||++|||||||++ ++|+||||||++|++||.++||.
T Consensus 38 ~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~~ 112 (118)
T PRK06824 38 AGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGFK 112 (118)
T ss_pred CcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCCe
Confidence 345699998886 47999999999999 999999999999999999999985 69999999999999999999994
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Back Show alignment and domain information
Probab=99.73 E-value=1.2e-17 Score=124.20 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=75.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~--G 101 (113)
+.-+++|.|..+-|.+||.||+|+||+ |+||++++||.|.++||||+||+.++...++|.||||..+.|.+|+.+. -
T Consensus 97 k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~e 176 (193)
T KOG3239|consen 97 KRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPE 176 (193)
T ss_pred ccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhccc
Confidence 345689999999999999999999999 9999999999999999999999998888899999999999999999885 4
Q ss_pred CCCCCCeEe
Q 039810 102 IVKKEFIKI 110 (113)
Q Consensus 102 ~~~~~~I~i 110 (113)
+ ++++..|
T Consensus 177 v-~ed~~~I 184 (193)
T KOG3239|consen 177 V-PEDDVKI 184 (193)
T ss_pred C-Cccccee
Confidence 5 3444433
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.69 E-value=4.6e-17 Score=135.34 Aligned_cols=98 Identities=29% Similarity=0.420 Sum_probs=86.9
Q ss_pred CCCcccccccCCC----CCCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCC-CCeEEE
Q 039810 11 AFDPFAEANAEDS----GAGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQ 84 (113)
Q Consensus 11 ~~d~~~~~~~~~~----~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~-~g~~I~ 84 (113)
.+.||-++...|. -+|..++|.|.+++|.|||+||+|+||+ |++|+..+|..|++.|+|+.|+.+.|. .+.+++
T Consensus 445 rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVq 524 (560)
T KOG2522|consen 445 RMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQ 524 (560)
T ss_pred cCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEE
Confidence 4677777765554 5789999999999999999999999999 999999999999999999999988887 478999
Q ss_pred EcCChhHHHHHHHHH-cCCCCCCCeE
Q 039810 85 LQGDQRKNVSTFLVQ-AGIVKKEFIK 109 (113)
Q Consensus 85 vQGD~~~~v~~~L~~-~G~~~~~~I~ 109 (113)
|||+|.+.|.++|.+ +|+|+ .+|.
T Consensus 525 vQGnqih~iadlL~k~ygipk-K~I~ 549 (560)
T KOG2522|consen 525 VQGNQIHSIADLLNKSYGIPK-KWID 549 (560)
T ss_pred EecchhhHHHHHHHHhhCCCH-HHHh
Confidence 999999999999988 89965 4664
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=98.38 E-value=4.1e-06 Score=55.98 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=50.7
Q ss_pred CeEEEEEEe-ecCCeeEEEEeCCCCcchHHHHHHHHhhhccc------ccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 29 DYVHIRVQQ-RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC------NGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 29 ~~I~I~~e~-R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~c------ggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
..+-|.... +.|.+.+|+|+.++ + |+..|.++|++.|+= ...|.+ ..+.|+|+|||.+.|++||.++|
T Consensus 12 ~~LPVY~~~k~~g~~~~T~IrkI~-G-D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~G 86 (87)
T PF05046_consen 12 GNLPVYLDIKNGGNRKITVIRKIE-G-DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEKG 86 (87)
T ss_pred CcccEEEEEeCCCcEeEEEEEeec-C-CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHCc
Confidence 344555544 44789999999997 3 567777888777541 233432 25699999999999999999999
Q ss_pred C
Q 039810 102 I 102 (113)
Q Consensus 102 ~ 102 (113)
|
T Consensus 87 F 87 (87)
T PF05046_consen 87 F 87 (87)
T ss_pred C
Confidence 7
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Back Show alignment and domain information
Probab=96.92 E-value=0.0028 Score=47.06 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=46.1
Q ss_pred EEEEEEe-ecCCeeEEEEeCCC-C----cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 039810 31 VHIRVQQ-RNGRKSLTTVQGLK-K----EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 31 I~I~~e~-R~g~K~VT~V~Gl~-~----~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~ 102 (113)
+-+.... ++|+|.+|+|+.++ + ..||.+.+...-++--| .-|.+ -.+.|.+-|||.+.|++||.++||
T Consensus 96 lPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 96 LPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 3344443 34999999999999 4 34566555554444223 11221 145899999999999999999997
>PRK14451 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.70 E-value=0.35 Score=32.13 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=38.0
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~ 98 (113)
|+|.-.++-+...++.+..+++..|.|...+++.=+|++||+- .++..++|.
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 5565566667777788888888999998776666799999986 334444444
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Back Show alignment and domain information
Probab=93.10 E-value=0.29 Score=35.36 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=43.1
Q ss_pred CeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 29 DYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
++..++++ |+| |++.||. . .=+++-++|.|.+.+|+.|++ + ++...|+|.+.....+
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~ 92 (138)
T PRK03988 31 PKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVIN 92 (138)
T ss_pred CCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHH
Confidence 34444443 644 9999987 2 336999999999999999999 4 4799999998765554
>PRK14434 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.02 E-value=0.56 Score=31.36 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=39.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKE 106 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~-cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~~ 106 (113)
|+|.=.++-..-.+..+.++++ =.|.|...+++.-+|++||+..+.|.+|+.. .|-|+..
T Consensus 8 v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a 70 (92)
T PRK14434 8 VSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWA 70 (92)
T ss_pred EEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCE
Confidence 4455455556666677777777 7799987766667999999865555555543 3654333
>PRK14443 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.45 E-value=0.58 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGI 102 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD--~~~~v~~~L~~~G~ 102 (113)
|+|.=.++-....++.+..+++=.|.|...+++.=+|++||+ ..+...++|.+ |-
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~-g~ 66 (93)
T PRK14443 10 VTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK-GP 66 (93)
T ss_pred EEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc-CC
Confidence 344434445555666666677788999877777789999998 44444444433 54
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative
Back Show alignment and domain information
Probab=92.21 E-value=0.47 Score=34.05 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=43.7
Q ss_pred CCeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 28 KDYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
.++..++++ |+| |++.||. . .=+++-+.|.|.+.+|+.|++. ++...|+|.+.....+
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLN 87 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHH
Confidence 344445544 554 9999997 2 3369999999999999999984 3589999998775554
>PRK14450 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.64 E-value=1.1 Score=29.77 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=38.4
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCC-eEEEEcCC--hhHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG-QVIQLQGD--QRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g-~~I~vQGD--~~~~v~~~L~~~G 101 (113)
+|+|.=.++-....+..+..+++=.|.|...+++. -+|++||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 34444455556666777777778889998766554 68999999 5667777775 45
>PRK14444 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.21 E-value=1.3 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=34.8
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.=.++-+...+..+.++++=.|.|+..+++.=+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 9 FISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 34454455555666666666677889998765555699999994 335555544
>PRK14420 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.93 E-value=1.3 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=36.8
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCC
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKE 106 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~~ 106 (113)
+|.=.++-....+..+..+++=.|.|...+++.=+|++||+- +.|.+|+.. .| |+..
T Consensus 9 ~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~-p~~a 67 (91)
T PRK14420 9 DGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKG-SPFS 67 (91)
T ss_pred EEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhC-CCCC
Confidence 343344444555556666667889998776666799999984 666666655 36 4443
>PRK14426 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.71 E-value=1.5 Score=29.14 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=37.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKK 105 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~ 105 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.. +|.+|+.. .|.|+.
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~ 69 (92)
T PRK14426 10 VYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRS 69 (92)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCC
Confidence 34443444555666666667778899987777767999999953 35555433 465553
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5
Back Show alignment and domain information
Probab=90.31 E-value=1 Score=31.27 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred eEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 30 YVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
+..+.++ |+| -|++.||. . .=+++-++|.|.+.+|+.|++.. .+...|+|.+..+-.+
T Consensus 8 ~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~ 70 (110)
T smart00653 8 PPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQ 70 (110)
T ss_pred CCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHH
Confidence 3344444 544 68888987 2 33699999999999999999953 2689999998765544
>PRK14432 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.09 E-value=1.9 Score=28.83 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=37.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEc-CChhHHHHHHHHH--cCCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQ-GDQRKNVSTFLVQ--AGIVKKEF 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQ-GD~~~~v~~~L~~--~G~~~~~~ 107 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++| |+. +.|.+|+.. .| |+...
T Consensus 8 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~g-p~~a~ 69 (93)
T PRK14432 8 ISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNG-NKYSN 69 (93)
T ss_pred EEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhC-CCccE
Confidence 3444344445555666666667889998776666799998 985 445555543 35 55433
>PRK14422 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.98 E-value=2.2 Score=28.51 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=35.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+... |.+|+..
T Consensus 12 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 63 (93)
T PRK14422 12 VHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQL 63 (93)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 345445555666667777777788999877666679999998643 4444433
>PRK14429 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.30 E-value=1.9 Score=28.46 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKE 106 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~~~G~~~~~ 106 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.-+|++||+-. +...++|. .| |+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g-p~~a 67 (90)
T PRK14429 8 LTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG-VPCT 67 (90)
T ss_pred EEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC-CCce
Confidence 34444455556666677777778999987666657999999864 44444454 36 4443
>PRK14431 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.64 E-value=2.3 Score=28.20 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=37.7
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVK 104 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G~~~ 104 (113)
|+|.=.++-+.-.++.+.++++=.|.|...++ +-+|++||+. .+...++|.+ |-|+
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~p~ 65 (89)
T PRK14431 8 VFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GASP 65 (89)
T ss_pred EEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CCCC
Confidence 34544555566666777777788899987766 5899999985 4455555543 5533
>PRK14433 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.37 E-value=2.5 Score=27.91 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=35.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|.+|||-. .|.+|+..
T Consensus 7 v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 7 VSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 34433445555666666677778899987776657999999964 56665544
>PRK14437 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.28 E-value=2.6 Score=29.18 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=36.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.-+|++||+.. +...++|.
T Consensus 29 V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 29 VSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 45555555666667777777778899987776668999999964 44444454
>PRK14427 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.27 E-value=2.3 Score=28.44 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.7
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|.=.++-+...++.+..+++=.|.|...+++.=+|++||+.. .|.+|+..
T Consensus 13 ~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~ 63 (94)
T PRK14427 13 FGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDW 63 (94)
T ss_pred EEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 3433444455556666666778899987666657999999874 36555544
>PRK14435 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.75 E-value=2.8 Score=27.77 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=34.3
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 8 VEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 3444444455555666666677889998877766799999986 335555443
>PRK14425 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.65 E-value=2.4 Score=28.33 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=33.7
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
+|.-.++-+...++.+..+++=.|.|+..+++.=+|++||+.- +...++|.
T Consensus 13 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 13 TGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 3433344455555666666668899987766667999999754 55666665
>PRK14439 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.20 E-value=3.1 Score=31.00 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=40.4
Q ss_pred EEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 45 TTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 45 T~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
-.|+|.-.++-....++.+..+++=.|.|...+++.-+|++||+. .+...++|.+.|
T Consensus 79 i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 79 AWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 345666566677777777888888999998777777799999986 444444454434
>PRK14428 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.18 E-value=3.6 Score=27.87 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=35.9
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-+.-.+..+.++++=.|.|...+++.-+|++||+. +.|.+|+..
T Consensus 14 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 14 VTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 3454455556666677777777889998776666799999985 445555444
>PRK14442 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.10 E-value=3.6 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=34.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 59 (91)
T PRK14442 10 VGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALE 59 (91)
T ss_pred EEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 34544555556666666677778899987766667999999864 354444
>PRK14423 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.82 E-value=3.4 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+...++.+.++++=.|.|...+++.=+|.+||+.. .|.+|+..
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 11 VSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 34544555566667777777778899987655556999999864 45555433
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3
Back Show alignment and domain information
Probab=86.59 E-value=3.4 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=36.6
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|+|.=.++-....++.+..+++=.|.|...+++.-+|++||+- +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 45665567777888888888888889998766665799999964 335555433
6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
>PRK14445 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.53 E-value=2.9 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=34.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+-.. |.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (91)
T PRK14445 10 VSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQ 61 (91)
T ss_pred EEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHH
Confidence 344444555566666777777788999876655579999998632 5444433
>PRK14440 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.23 E-value=4.4 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|.-.++-....+..+.++++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 10 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 10 YGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 343334444555555556666778998766665799999986 556555544
>PRK14448 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.76 E-value=5.3 Score=26.44 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=35.6
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+-. .|.+|+
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~ 57 (90)
T PRK14448 7 IVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFR 57 (90)
T ss_pred EEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHH
Confidence 344554555666667777777778899988777667999999863 244444
>PRK14452 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.74 E-value=5.8 Score=27.35 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.8
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
.|+|.-.++-+.-.+..+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 25 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 25 LIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 344544555556666666666778899987766667999999964 455553
>PRK14436 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.67 E-value=4.9 Score=26.66 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=34.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+...++.+..+++=.|.|...+++.=+|++||+- +.|.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 10 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 3444445555666666666777889998776666799999986 335555544
>PRK14449 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.33 E-value=4 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=36.0
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 9 ITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 3454455556666667777777889998776666799999986 336665544
>PRK14446 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.25 E-value=3.5 Score=27.34 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=37.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+.-.+..+.++++=.|.|...+++.-+|++||+-. .+.+|+..
T Consensus 8 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 8 VSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 45555566666777778888889999998777768999999853 45544433
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Back Show alignment and domain information
Probab=85.12 E-value=2.1 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=42.2
Q ss_pred CeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 29 DYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
++..++++ |+| |+|.||. . .=+++-++|.|...||+.|++. ++...|+|.+...-.+
T Consensus 27 p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~ 88 (201)
T PRK12336 27 PEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQ 88 (201)
T ss_pred CCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHH
Confidence 34444443 533 9999997 2 3368999999999999999995 3589999998765544
>PRK14421 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.92 E-value=4.7 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=32.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+-.. |.+|+
T Consensus 10 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~ 59 (99)
T PRK14421 10 IRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMI 59 (99)
T ss_pred EEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHH
Confidence 344444445555666666667788999876655579999998643 44444
>PRK14424 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.68 E-value=6.3 Score=26.45 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=35.3
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
+|+|.=.++-+...+..+..+++=.|.|...+++.-+|.+||+-. +...++|.
T Consensus 12 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 12 RVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 344444455566666666677778899987776667999999864 34444444
>PRK14438 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.67 E-value=4.6 Score=26.76 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 8 TVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 34555555566667777777788899998766555699999985 335555444
>PRK14441 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=83.67 E-value=6 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=34.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.=.++-....+..+.++++=.|.|...+++.-+|++||+-. .|.+|+
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 60 (93)
T PRK14441 11 VSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALV 60 (93)
T ss_pred EEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHH
Confidence 34544555566667777777788899987666657999999843 444443
>PRK14447 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=83.60 E-value=4.5 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCC-CeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL-GQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~-g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-+.-.++.+.++++=.|.|...+++ .=+|++||+ .+.|.+|+..
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 10 IRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 455555556666777777777788999876655 368999998 4555555443
>PRK14430 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=82.36 E-value=7.8 Score=25.77 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L 97 (113)
|.|.=.++-+...+..+.++++=.|.|...+++.-+|++||+- .+.+.++|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 10 AHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 3343344445556666666677889998776666799999984 24555555
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 113
d2if1a_ 126
Eukaryotic translation initiation factor eIF-1 (SU
100.0 d1d1ra_ 83
YciH {Escherichia coli [TaxId: 562]}
99.89 d1neea1 98
Translation initiation factor 2 beta, aIF2beta, N-
94.85 d1urra_ 97
Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila
94.23 d1w2ia_ 90
Acylphosphatase {Pyrococcus horikoshii [TaxId: 539
93.23 d1ulra_ 87
Acylphosphatase {Thermus thermophilus [TaxId: 274]
92.6 d2acya_ 98
Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
87.83 d1apsa_ 98
Acylphosphatase {Horse (Equus caballus) [TaxId: 97
86.73
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-39 Score=228.49 Aligned_cols=111 Identities=56% Similarity=1.000 Sum_probs=104.4
Q ss_pred CCccccCCCCCCCcccccccCCC--CCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCC
Q 039810 1 MSEFDTQIPSAFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE 78 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~ 78 (113)
||.|+||. +||||++....++ +++...+|+|++++|+|||.||+|+||++++|+++|||+||++|||||||++++.
T Consensus 14 ~s~i~nl~--s~dpf~d~~~~~~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~acggSVk~~~~ 91 (126)
T d2if1a_ 14 MSAIQNLH--SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCCC--CCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred cccccccc--cCCCccccccccccCCCCCcceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhcCCCceEEeCCC
Confidence 78999988 6999999876666 6778899999999999999999999999889999999999999999999999888
Q ss_pred CCeEEEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 79 LGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 79 ~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
++.+|+||||||++|.+||.++|++++++|+||||
T Consensus 92 ~~~~I~IQGD~r~~v~~~L~~~g~~~k~~I~vHg~ 126 (126)
T d2if1a_ 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CCcEEEEcccHHHHHHHHHHHcCCCccccEEecCC
Confidence 88899999999999999999999999999999998
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=7.9e-24 Score=138.42 Aligned_cols=71 Identities=28% Similarity=0.496 Sum_probs=63.7
Q ss_pred CCeEEEEEEee-cCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 28 KDYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 28 ~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
...|+|+.+++ +++|.||+|+||+ +.+|+++||+.||++||||||+++ ++|+|||||+++|.+||.++||.
T Consensus 3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk~-----~~I~lQGd~~~~v~~~L~~~G~~ 75 (83)
T d1d1ra_ 3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKGMK 75 (83)
T ss_dssp CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHHHTCE
T ss_pred CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEEEC-----CEEEEeCcHHHHHHHHHHHcCCc
Confidence 35788887764 4559999999999 999999999999999999999974 58999999999999999999994
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.85 E-value=0.016 Score=36.90 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCccccCCCCCCCcccccccCCCCCCCCCeEEEEEEeecCCeeEEEEeCCCC-----cchHHHHHHHHhhhcccccEEEe
Q 039810 1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKK-----EFSYNKILKDLKKEFCCNGTVVQ 75 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~-----~~dlk~lak~lKk~~~cggsv~~ 75 (113)
|++-+.|+--.|+-+-+...+.+ .-..++..++++ |+| |++.+|.. .=+++-++|.|.+.+||.|++.
T Consensus 1 m~~Y~~LL~R~~~~l~~~~~~~~-R~~mP~~~v~~e---Gkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~- 73 (98)
T d1neea1 1 MDDYEKLLERAIDQLPPEVFETK-RFEVPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE- 73 (98)
T ss_dssp CCSSCCCCCSSSSSSCTTSCCCC-CCCCSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-
T ss_pred CccHHHHHHHHHHHCCcccCCCc-ceecCCceEEEe---cce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe-
Confidence 55666666333443322221111 122333444433 655 88889872 3479999999999999999984
Q ss_pred CCCCCeEEEEcCChhHHHHH
Q 039810 76 DPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 76 ~~~~g~~I~vQGD~~~~v~~ 95 (113)
++.+.|+|.+.....+
T Consensus 74 ----~~~lii~G~~~~~~i~ 89 (98)
T d1neea1 74 ----GGRAILQGKFTHFLIN 89 (98)
T ss_dssp ----TTTEEEESSCSSSHHH
T ss_pred ----CCEEEEEeeeCHHHHH
Confidence 3469999998765444
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.23 E-value=0.16 Score=31.38 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=41.2
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~~~G 101 (113)
|.|.-.++-....++.+..+++..|.|+..+++.=+|++||+.. +...++|.+.|
T Consensus 12 V~G~VQGVGFR~~~~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~~ 68 (97)
T d1urra_ 12 IFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 68 (97)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC
T ss_pred EEEEecCcCChHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 55655667778888888888899999998777778999999843 34555665544
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.23 E-value=0.17 Score=31.04 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-+...++.+..+++-.|.|...+++.=+|.+||+ .+.|.+|+..
T Consensus 9 V~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 60 (90)
T d1w2ia_ 9 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGD-EERVEALIGW 60 (90)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEeEeCcCChHHHHHHHHHcCCeEEEEECCCCCEEEEEECC-HHHHHHHHHH
Confidence 445445666777777777888899999877666679999998 5777777755
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]
Probab=92.60 E-value=0.3 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.7
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~ 98 (113)
+|+|.-.++-....++.+..+++=.|.|+..+++.=+|.+||+. +.|.+|+.
T Consensus 6 iV~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~~G~~-~~v~~f~~ 57 (87)
T d1ulra_ 6 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK-EALELFLH 57 (87)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH-HHHHHHHH
T ss_pred EEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECH-HHHHHHHH
Confidence 45665566667777788888888999999877777899999984 45555543
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.83 E-value=1.1 Score=27.40 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=39.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHH---HHHcCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTF---LVQAGI 102 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~---L~~~G~ 102 (113)
|+|--.++-....++.+..+++=.|.|...+++.=+|.+||+ ...|.+| |...|-
T Consensus 13 V~G~VQGVGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~~gp 70 (98)
T d2acya_ 13 IFGKVQGVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGP-ASKVRHMQEWLETKGS 70 (98)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHHHHTCS
T ss_pred EEEEEcCcCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEEC-HHHHHHHHHHHHhcCC
Confidence 445445666777778888888889999987777779999998 4445554 444565
>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.73 E-value=0.33 Score=29.80 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=36.7
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+...++..|.|...+++.=+|++||+ .+.|.+|+..
T Consensus 13 V~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 64 (98)
T d1apsa_ 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGP-EEKVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEE-HHHHHHHHHS
T ss_pred EEEeEcCcCcHHHHHHHHHHcCCeEEEEECCCCCEEEEEEcC-HHHHHHHHHH
Confidence 445445555556666666777799999876666679999997 4667777665
