Citrus Sinensis ID: 039825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRLPTM
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MKSENLTMALVNLAGIMeradvsllpgvyKEVGaalhtdpigldsLTLFRSIVQSSCYPLAAYLFVHHNRAHVIalesntepvpvprkaetqshriplvalfpeplkdtrdprlptm
Flexible Loop (DISEMBL)
MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALesntepvpvprkaetqshriplvalfpeplkdtrdprlptm
Low Complexity Region (SEG)
MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRLPTM
Disordered region (IsUnstruct)
******TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE****************************************
Disordered Region (DISOPRED)
****NLT*ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP******SHRIPLVALFPEPLKDTR*******
Disordered Region (DISEMBL)
MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRLPTM
Disordered Region (DISPRO)
***ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR*****SHRIPLVALFPEPLK**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRLPTM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
224099933	520	predicted protein [Populus trichocarpa]	0.649	0.146	0.894	3e-31
296090607	521	unnamed protein product [Vitis vinifera]	0.649	0.145	0.881	5e-31
225439014	526	PREDICTED: uncharacterized protein LOC10	0.649	0.144	0.881	5e-31
357489577	506	Quinolone resistance protein norA [Medic	0.649	0.150	0.855	4e-30
224096193	520	predicted protein [Populus trichocarpa]	0.649	0.146	0.855	4e-30
255545694	526	carbohydrate transporter, putative [Rici	0.649	0.144	0.868	4e-30
224099937	465	predicted protein [Populus trichocarpa]	0.649	0.163	0.855	2e-29
449451621	520	PREDICTED: protein spinster-like [Cucumi	0.649	0.146	0.828	1e-28
449437244	521	PREDICTED: uncharacterized protein LOC10	0.649	0.145	0.828	1e-28
449502871	521	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.649	0.145	0.828	1e-28

>gi|224099933|ref|XP_002334427.1| predicted protein [Populus trichocarpa] gi|222872190|gb|EEF09321.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/76 (89%), Positives = 69/76 (90%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E LT+ LVNLAGIMERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQSSCYPL
Sbjct: 1  MKQETLTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL VHHNRAHVIAL
Sbjct: 61 AAYLAVHHNRAHVIAL 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090607|emb|CBI40991.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 69/76 (90%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          M+SE LT+ LVNLAGIMERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQSSCYPL
Sbjct: 1  MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL  HHNRAHVIAL
Sbjct: 61 AAYLATHHNRAHVIAL 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439014|ref|XP_002262789.1| PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 69/76 (90%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          M+SE LT+ LVNLAGIMERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQSSCYPL
Sbjct: 6  MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 65

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL  HHNRAHVIAL
Sbjct: 66 AAYLATHHNRAHVIAL 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489577|ref|XP_003615076.1| Quinolone resistance protein norA [Medicago truncatula] gi|355516411|gb|AES98034.1| Quinolone resistance protein norA [Medicago truncatula]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 68/76 (89%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MKSE LT+ LVNLAGIME+AD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQSSCYP+
Sbjct: 1  MKSETLTLVLVNLAGIMEKADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPI 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL   HNRAHVIAL
Sbjct: 61 AAYLATRHNRAHVIAL 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096193|ref|XP_002310569.1| predicted protein [Populus trichocarpa] gi|222853472|gb|EEE91019.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/76 (85%), Positives = 68/76 (89%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E LT+ LVN AGIM+RAD SLLPGVYKEVGAALHTDP GL SLTLFRS+VQSSCYPL
Sbjct: 1  MKQEALTLVLVNFAGIMQRADESLLPGVYKEVGAALHTDPTGLGSLTLFRSVVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL VHHNRAHVIAL
Sbjct: 61 AAYLAVHHNRAHVIAL 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis] gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 67/76 (88%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E LT+ LVNLAGIMERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQSSCYPL
Sbjct: 1  MKQETLTLLLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL V HNRAHVIA 
Sbjct: 61 AAYLAVKHNRAHVIAF 76

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099937|ref|XP_002334428.1| predicted protein [Populus trichocarpa] gi|222872191|gb|EEF09322.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/76 (85%), Positives = 68/76 (89%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E LT+ LVN AGIM+RAD SLLPGVYKEVGAALHTDP GL SLTLFRS+VQSSCYPL
Sbjct: 1  MKQEALTLVLVNFAGIMQRADESLLPGVYKEVGAALHTDPTGLGSLTLFRSVVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL VHHNRAHVIAL
Sbjct: 61 AAYLAVHHNRAHVIAL 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451621|ref|XP_004143560.1| PREDICTED: protein spinster-like [Cucumis sativus] gi|449496531|ref|XP_004160158.1| PREDICTED: protein spinster-like [Cucumis sativus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/76 (82%), Positives = 67/76 (88%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MKSE +T+ LVNLA IMER D SLLPGVYKEVGAALH DP GL SLTLFRS+VQSSCYPL
Sbjct: 1  MKSETVTLILVNLAAIMERTDESLLPGVYKEVGAALHIDPTGLGSLTLFRSVVQSSCYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL VHHNRAHVIA+
Sbjct: 61 AAYLAVHHNRAHVIAV 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437244|ref|XP_004136402.1| PREDICTED: uncharacterized protein LOC101220496 [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E +T+ LVNLAG+MERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQ++CYPL
Sbjct: 1  MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL V HNRAHVIAL
Sbjct: 61 AAYLAVRHNRAHVIAL 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502871|ref|XP_004161766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101220496 [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 1  MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
          MK E +T+ LVNLAG+MERAD SLLPGVYKEVGAALHTDP GL SLTLFRSIVQ++CYPL
Sbjct: 1  MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60

Query: 61 AAYLFVHHNRAHVIAL 76
          AAYL V HNRAHVIAL
Sbjct: 61 AAYLAVRHNRAHVIAL 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2194749	490	UNE2 "AT1G78130" [Arabidopsis	0.649	0.155	0.776	6.2e-27
TAIR|locus:2184163	488	AT5G10190 "AT5G10190" [Arabido	0.649	0.155	0.815	2.2e-26
TAIR|locus:2115430	489	AT4G36790 "AT4G36790" [Arabido	0.615	0.147	0.458	2.3e-10
TAIR|locus:2046313	473	AT2G18590 "AT2G18590" [Arabido	0.632	0.156	0.337	4.6e-06

TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 6.2e-27, P = 6.2e-27
 Identities = 59/76 (77%), Positives = 67/76 (88%)

Query:     1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
             MK+E +T+ LVNLAGIMERAD SLLPGVYKEVG ALHTDP GL SLTL RS+VQ++CYPL
Sbjct:     1 MKAETMTLLLVNLAGIMERADESLLPGVYKEVGLALHTDPTGLGSLTLLRSMVQAACYPL 60

Query:    61 AAYLFVHHNRAHVIAL 76
             AAY+ + HNRAHVIAL
Sbjct:    61 AAYMAIRHNRAHVIAL 76

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 62/76 (81%), Positives = 64/76 (84%)

Query:     1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPL 60
             MKSE LT+ LV LAGIMERAD SLLPGVYKEVG ALH DP  L +LTLFRSIVQSSCYPL
Sbjct:     1 MKSETLTLVLVYLAGIMERADESLLPGVYKEVGDALHVDPTALGTLTLFRSIVQSSCYPL 60

Query:    61 AAYLFVHHNRAHVIAL 76
             AAYL   HNRAHVIAL
Sbjct:    61 AAYLSSRHNRAHVIAL 76

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query:     5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYL 64
             ++++ L+NLA IMERAD +LLP VYKEV  A +  P  L  LT  R+ VQ    PLA  L
Sbjct:    42 SISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGLASPLAGVL 101

Query:    65 FVHHNRAHVIAL 76
              + ++R  V+A+
Sbjct:   102 VITYDRPIVLAI 113

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query:     5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYL 64
             ++++ ++NLA +M+RAD  L+P   KE+  A H     +  L+  R+IVQ    PLA   
Sbjct:    12 SISLIIINLATMMQRADEKLIPSTAKELKEAFHAKLSDIGLLSFIRNIVQGLASPLAGLF 71

Query:    65 FVHHNRAHVIALES 78
              + ++R  V A  S
Sbjct:    72 AISYDRPTVFAFGS 85


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.47    30
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.89u 0.17s 13.06t   Elapsed:  00:00:01
  Total cpu time:  12.89u 0.17s 13.06t   Elapsed:  00:00:01
  Start:  Tue May 21 05:45:04 2013   End:  Tue May 21 05:45:05 2013

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.75
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.73
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.71
TIGR00891	405	2A0112 putative sialic acid transporter.	99.68
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.67
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.63
PRK12307	426	putative sialic acid transporter; Provisional	99.6
PRK03699	394	putative transporter; Provisional	99.6
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.59
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.58
PRK03893	496	putative sialic acid transporter; Provisional	99.58
PRK15075	434	citrate-proton symporter; Provisional	99.56
PRK03545	390	putative arabinose transporter; Provisional	99.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.56
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
PRK09705	393	cynX putative cyanate transporter; Provisional	99.54
PRK11663	434	regulatory protein UhpC; Provisional	99.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.51
PRK09952	438	shikimate transporter; Provisional	99.5
PRK10504	471	putative transporter; Provisional	99.5
PRK10133	438	L-fucose transporter; Provisional	99.48
PLN00028	476	nitrate transmembrane transporter; Provisional	99.47
TIGR00895	398	2A0115 benzoate transport.	99.47
PRK10091	382	MFS transport protein AraJ; Provisional	99.47
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.46
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.46
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.46
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.45
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.44
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.44
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.43
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.43
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.4
PRK11043	401	putative transporter; Provisional	99.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.37
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.35
PRK12382	392	putative transporter; Provisional	99.34
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.32
TIGR00900	365	2A0121 H+ Antiporter protein.	99.32
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.31
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.31
PRK10054	395	putative transporter; Provisional	99.28
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.27
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.27
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.27
PRK09874	408	drug efflux system protein MdtG; Provisional	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.19
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.18
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.16
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
TIGR00898	505	2A0119 cation transport protein.	99.12
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.12
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.11
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.11
TIGR00805	633	oat sodium-independent organic anion transporter.	99.11
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.1
PTZ00207	591	hypothetical protein; Provisional	99.07
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.06
PRK09528	420	lacY galactoside permease; Reviewed	99.06
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	99.01
PRK10489	417	enterobactin exporter EntS; Provisional	99.0
PRK15011	393	sugar efflux transporter B; Provisional	98.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.94
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.81
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.76
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.76
PF12832	77	MFS_1_like: MFS_1 like family	98.75
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.7
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.7
KOG0254	513	consensus Predicted transporter (major facilitator	98.69
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.68
PRK15011	393	sugar efflux transporter B; Provisional	98.66
TIGR00901	356	2A0125 AmpG-related permease.	98.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.63
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.6
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.59
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.54
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.54
KOG2615	451	consensus Permease of the major facilitator superf	98.52
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.52
PRK09528	420	lacY galactoside permease; Reviewed	98.52
PRK03699	394	putative transporter; Provisional	98.52
TIGR00900	365	2A0121 H+ Antiporter protein.	98.51
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.5
PRK03893	496	putative sialic acid transporter; Provisional	98.5
TIGR00891	405	2A0112 putative sialic acid transporter.	98.49
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.47
TIGR00895	398	2A0115 benzoate transport.	98.47
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.46
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.45
PRK10642	490	proline/glycine betaine transporter; Provisional	98.44
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.43
PRK03545	390	putative arabinose transporter; Provisional	98.42
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.42
PRK11010	491	ampG muropeptide transporter; Validated	98.41
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.39
TIGR00901	356	2A0125 AmpG-related permease.	98.38
PRK11902	402	ampG muropeptide transporter; Reviewed	98.37
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.36
PRK09705	393	cynX putative cyanate transporter; Provisional	98.34
KOG2533	495	consensus Permease of the major facilitator superf	98.33
PRK12307	426	putative sialic acid transporter; Provisional	98.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.29
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.28
PRK15075	434	citrate-proton symporter; Provisional	98.28
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.25
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.25
KOG2532	466	consensus Permease of the major facilitator superf	98.24
PRK10091	382	MFS transport protein AraJ; Provisional	98.23
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.23
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.22
PRK09952	438	shikimate transporter; Provisional	98.21
PRK03633	381	putative MFS family transporter protein; Provision	98.21
COG0477	338	ProP Permeases of the major facilitator superfamil	98.21
PRK09874	408	drug efflux system protein MdtG; Provisional	98.21
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.2
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.19
TIGR00893	399	2A0114 d-galactonate transporter.	98.18
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.17
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.17
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.15
PRK10504	471	putative transporter; Provisional	98.15
PRK11902	402	ampG muropeptide transporter; Reviewed	98.15
PRK10133	438	L-fucose transporter; Provisional	98.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.12
PLN00028	476	nitrate transmembrane transporter; Provisional	98.09
PF13347	428	MFS_2: MFS/sugar transport protein	98.08
PRK11010	491	ampG muropeptide transporter; Validated	98.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.07
PRK10489	417	enterobactin exporter EntS; Provisional	98.06
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.06
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.05
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.05
PRK09669	444	putative symporter YagG; Provisional	98.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.04
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.03
PRK05122	399	major facilitator superfamily transporter; Provisi	98.03
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.03
PRK12382	392	putative transporter; Provisional	97.99
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.94
PRK09848	448	glucuronide transporter; Provisional	97.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.9
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.89
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.84
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.83
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.81
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.8
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.76
PRK11663	434	regulatory protein UhpC; Provisional	97.75
PRK10429	473	melibiose:sodium symporter; Provisional	97.75
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.75
PRK11043	401	putative transporter; Provisional	97.72
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.71
KOG3762	618	consensus Predicted transporter [General function	97.69
PRK09848	448	glucuronide transporter; Provisional	97.61
PRK10429	473	melibiose:sodium symporter; Provisional	97.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.57
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.51
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.5
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.5
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.49
KOG0569	485	consensus Permease of the major facilitator superf	97.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.41
PRK10054	395	putative transporter; Provisional	97.41
TIGR00898	505	2A0119 cation transport protein.	97.39
PRK11462	460	putative transporter; Provisional	97.37
PRK09669	444	putative symporter YagG; Provisional	97.29
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.24
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.2
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.16
KOG0569	485	consensus Permease of the major facilitator superf	97.16
PF13347	428	MFS_2: MFS/sugar transport protein	97.13
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.0
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.94
KOG0254	513	consensus Predicted transporter (major facilitator	96.92
TIGR00805	633	oat sodium-independent organic anion transporter.	96.9
COG2211	467	MelB Na+/melibiose symporter and related transport	96.81
KOG3626	735	consensus Organic anion transporter [Secondary met	96.62
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.6
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.49
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.39
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.3
PRK11462	460	putative transporter; Provisional	96.25
KOG2533	495	consensus Permease of the major facilitator superf	96.22
KOG2563	480	consensus Permease of the major facilitator superf	96.14
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.4
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.32
KOG2532	466	consensus Permease of the major facilitator superf	95.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.01
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	94.57
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.57
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	94.56
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.18
KOG0637	498	consensus Sucrose transporter and related proteins	93.94
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.86
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.8
COG2211	467	MelB Na+/melibiose symporter and related transport	93.54
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.42
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	92.96
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	92.78
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.71
COG2270	438	Permeases of the major facilitator superfamily [Ge	92.64
KOG3764	464	consensus Vesicular amine transporter [Intracellul	92.4
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	92.08
PRK10207	489	dipeptide/tripeptide permease B; Provisional	91.88
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.0
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	90.56
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	89.05
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	88.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	88.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	87.12
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	86.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	85.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	85.38
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	85.1
PRK03612	521	spermidine synthase; Provisional	84.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	81.94

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.75  E-value=1.5e-17  Score=133.78  Aligned_cols=99  Identities=8%  Similarity=-0.130  Sum_probs=94.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      |.||+.+.++++++++|++|+.+++.+.|.+++|+|+|+.|.|++.+++.+++++++++.|+++||+|||+++..+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      ++++.++++++|++.+++.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~  102 (412)
T TIGR02332        84 GIASTATMFATGPESLYLL  102 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHH
Confidence            9999999999998876543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.73  E-value=4.3e-18  Score=141.66  Aligned_cols=100  Identities=28%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825            1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus         1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      ++..++++.++++..++|++||..++.+++.+++.+|++++..|++.+.+.+.+.+++|++|+|+|||+||+++.+|+.+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccchhhHh
Q 039825           81 EPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~~~l~~  100 (117)
                      |++++++++++..|+++++.
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~  127 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLC  127 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.71  E-value=1.8e-16  Score=130.31  Aligned_cols=100  Identities=14%  Similarity=0.003  Sum_probs=96.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825            1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus         1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      |.|+|.+++.++++.++..+|+++++..+|.+.+|+|.+..|.+|+.+++.++++++++++|+++||+|||+++..+..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccchhhHh
Q 039825           81 EPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~~~l~~  100 (117)
                      +.++++.|++++|++.+++.
T Consensus        81 ~~~~~~~~~~a~~~~~li~~  100 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIAT  100 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            99999999999998886653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.68  E-value=7.5e-16  Score=119.58  Aligned_cols=98  Identities=11%  Similarity=-0.062  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++|+.+..++++++.+++|+.+++.+.|.+++++|++++|.|++.+.+.+++.++++++|+++||+|||+++..+.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++++++++++|++..++.
T Consensus        89 ~~~~~~~~~~~~~~l~~~  106 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIA  106 (405)
T ss_pred             HHHHHHHHhccHHHHHHH
Confidence            999999999998876543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.67  E-value=3.1e-16  Score=127.56  Aligned_cols=98  Identities=10%  Similarity=-0.030  Sum_probs=90.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      |+++.++.++.++++++++||.+++.+.|.+++|+|++.+|.|++.+++.++++++++++|+++||+|||+++..++++|
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----ccccchhhH
Q 039825           82 PVPVPRKAE-----TQSHRIPLV   99 (117)
Q Consensus        82 sl~t~l~a~-----a~s~~~~l~   99 (117)
                      ++++++.++     ++|++.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~  127 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIA  127 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHH
Confidence            998887766     577777655

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.63  E-value=4.9e-15  Score=119.31  Aligned_cols=93  Identities=8%  Similarity=-0.100  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC---CChhhhHHHHHHHH---HHHHHHHHHHHHHhhhhchHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALH---TDPIGLDSLTLFRS---IVQSSCYPLAAYLFVHHNRAHVIAL   76 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~---ls~~q~G~l~s~~~---l~~~l~~p~~G~LaDR~GRr~vl~~   76 (117)
                      +|++++...++++++|++|+.+++++.|.+.+|++   .+..|.+...+.+.   ++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45567778889999999999999999999999984   67776655555444   4445999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccc
Q 039825           77 ESNTEPVPVPRKAETQSHR   95 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a~s~~   95 (117)
                      ++.+|+++++++++++|+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~  117 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYE  117 (432)
T ss_pred             HHHHHHHHHHHHhhcCCch
Confidence            9999999999999999885

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.60  E-value=1.2e-14  Score=115.38  Aligned_cols=98  Identities=11%  Similarity=-0.038  Sum_probs=92.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .+|+.+..+.++++.+.+|+....++.|.+++|+|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++++.+++++|++.+++.
T Consensus        95 ~~~~~~~~~~~~~~l~~~  112 (426)
T PRK12307         95 VGTGLSGLASGVIMLTLS  112 (426)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            999999999888776554

>PRK03699 putative transporter; Provisional

Probab=99.60  E-value=1.4e-14  Score=115.10  Aligned_cols=97  Identities=10%  Similarity=-0.071  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      |||+..+.+.+++++++.+...++.++|++++++|+|.+|.|++.+.+.+++.++++++|+++||+|||+++..+..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhH
Q 039825           83 VPVPRKAETQSHRIPLV   99 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~   99 (117)
                      +++.++++++|++.+++
T Consensus        84 i~~~l~~~~~~~~~~~~  100 (394)
T PRK03699         84 LAVAGLMFSHSLALFSI  100 (394)
T ss_pred             HHHHHHHHcchHHHHHH
Confidence            99999999988876543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.59  E-value=2e-14  Score=113.44  Aligned_cols=98  Identities=14%  Similarity=0.009  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++|.++.++.+..+++++|++.++...|.+.+++|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            46778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++.+++++++|++.+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~  109 (406)
T PRK11551         92 LFSLATAQAWDFPSLLVA  109 (406)
T ss_pred             HHHHHHHHhccHHHHHHH
Confidence            999999999988775544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.59  E-value=2.1e-14  Score=113.38  Aligned_cols=100  Identities=11%  Similarity=-0.090  Sum_probs=94.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825            1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus         1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      |+..++.++.+.++.++..++..++.+.+|.+.+|+|+|..|.|++.+.+.+++.++++++|+++||+|||+++..+..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~   80 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI   80 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            66777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccchhhHh
Q 039825           81 EPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~~~l~~  100 (117)
                      +++++..+++++|++.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~  100 (381)
T PRK03633         81 FAAGCAGLGLMVGFWSWLAW  100 (381)
T ss_pred             HHHHHHHHHHhccHHHHHHH
Confidence            99999999999998886654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.58  E-value=3.7e-15  Score=113.92  Aligned_cols=96  Identities=9%  Similarity=-0.071  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      |+++++......+...++...++..|++++|+|+|.+|.|++.+++.+++.+++|++|+++||+|||+++..+..+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~   81 (377)
T TIGR00890         2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG   81 (377)
T ss_pred             eEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence            34445555555556667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhHh
Q 039825           85 VPRKAETQSHRIPLVA  100 (117)
Q Consensus        85 t~l~a~a~s~~~~l~~  100 (117)
                      +.++++++|++.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        82 FTFYAIADSLAALYLT   97 (377)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999886654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.58  E-value=3e-14  Score=115.27  Aligned_cols=99  Identities=13%  Similarity=-0.011  Sum_probs=93.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +++|+.+..++++++++.+|.+.++.++|.+.+++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      +++.+++++++|++.+++.
T Consensus        96 ~~~~~~~~~~~~~~~l~~~  114 (496)
T PRK03893         96 SVGTLACGFAPGYWTLFIA  114 (496)
T ss_pred             HHHHHHHHHHhHHHHHHHH
Confidence            9999999999888775544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.56  E-value=3.9e-14  Score=114.16  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=83.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHH-HHH-----HHHHHHHHHHHHHHhhhhchHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLT-LFR-----SIVQSSCYPLAAYLFVHHNRAHVIA   75 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~-s~~-----~l~~~l~~p~~G~LaDR~GRr~vl~   75 (117)
                      .+||++...+.+++++|++|+.+++.+.|.+++|++.++.|.+.+. +..     .++..++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            4678889999999999999999999999999999999999876554 322     2333578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccch
Q 039825           76 LESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        76 ~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      .+..+++++++++++++|++.
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~  111 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYAT  111 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHH
Confidence            999999999999999999874

>PRK03545 putative arabinose transporter; Provisional

Probab=99.56  E-value=4.4e-14  Score=111.72  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +++|..++.+.++.++...+..+...++|.+++|+|+|++|.|++.+.+.++++++++++|+++||+|||+++..+..++
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            34565566666655554444445556789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      .+++..+++++|++.+++.
T Consensus        85 ~~~~~~~~~~~~~~~l~~~  103 (390)
T PRK03545         85 IASHVLSALAWNFTVLLIS  103 (390)
T ss_pred             HHHHHHHHHhccHHHHHHH
Confidence            9999999999999987654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.56  E-value=4.4e-14  Score=123.30  Aligned_cols=98  Identities=12%  Similarity=-0.052  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .+|+++++++++.+++.+|.++++.++|.++++++++..+.|++.+++.+++.++++++|+++||+|||+++.+++++++
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~  243 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG  243 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++++++++++|++.++++
T Consensus       244 i~~ll~afa~s~~~llv~  261 (742)
T TIGR01299       244 FFAFFSSFVQGYGFFLFC  261 (742)
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            999999999998876554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=6.1e-14  Score=115.06  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh----hHHH--HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG----LDSL--TLFRSIVQSSCYPLAAYLFVHHNRAHVIALES   78 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q----~G~l--~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~   78 (117)
                      |+++...++++++|++|..+++.+.|.++++|+.+..+    .+.+  .++..+++.++++++|+++||+|||+++..++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            67788889999999999999999999999999754432    2222  46778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccch
Q 039825           79 NTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        79 ~~~sl~t~l~a~a~s~~~   96 (117)
                      ++++++++++++++|+..
T Consensus        95 ~l~~i~~~~~a~~~~~~~  112 (490)
T PRK10642         95 VIMSISTFCIGLIPSYAT  112 (490)
T ss_pred             HHHHHHHHHHHhcccHHH
Confidence            999999999999999874

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.54  E-value=4.6e-14  Score=112.61  Aligned_cols=78  Identities=10%  Similarity=0.005  Sum_probs=74.4

Q ss_pred             HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      ..+++++|.+++|+|+|..|.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++++.+++++|+..+++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999999999999999999986654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.53  E-value=6.8e-14  Score=112.90  Aligned_cols=97  Identities=8%  Similarity=-0.107  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .|++++....+++++.++|+..++..+|.+.+++|+|++|.|++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhH
Q 039825           83 VPVPRKAETQSHRIPLV   99 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~   99 (117)
                      ++++++++++|++.+++
T Consensus       100 ~~~~~~~~~~~~~~l~~  116 (434)
T PRK11663        100 IINILFGFSSSLWAFAL  116 (434)
T ss_pred             HHHHHHHHHhHHHHHHH
Confidence            99999999999887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.51  E-value=2.1e-13  Score=109.47  Aligned_cols=95  Identities=8%  Similarity=0.083  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      +++..+.++.+++.+|..+++...|.+.+++|.+..+.|++.+.+.+++.++.|++|+++||+|||+++..+..++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccchhhHh
Q 039825           86 PRKAETQSHRIPLVA  100 (117)
Q Consensus        86 ~l~a~a~s~~~~l~~  100 (117)
                      ..+++++|+..+++.
T Consensus        82 ~~~~~~~~~~~l~~~   96 (485)
T TIGR00711        82 LLCGVAPNLELMIIF   96 (485)
T ss_pred             HHHhCcCCHHHHHHH
Confidence            999999998876554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.50  E-value=3.3e-13  Score=109.35  Aligned_cols=92  Identities=8%  Similarity=-0.052  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHh--CCChhhhHHHH-----HHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKE-VGAAL--HTDPIGLDSLT-----LFRSIVQSSCYPLAAYLFVHHNRAHVI   74 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~--~ls~~q~G~l~-----s~~~l~~~l~~p~~G~LaDR~GRr~vl   74 (117)
                      +||+++....+++++|++|+.+++.+.|. +.+++  ++++. .|++.     ++..+++.+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            56788889999999999999999998875 56676  78876 56664     245567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccc
Q 039825           75 ALESNTEPVPVPRKAETQSHR   95 (117)
Q Consensus        75 ~~~~~~~sl~t~l~a~a~s~~   95 (117)
                      ..+..+|+++++++++++|+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~  118 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFS  118 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHH
Confidence            999999999999999999987

>PRK10504 putative transporter; Provisional

Probab=99.50  E-value=3.9e-13  Score=108.52  Aligned_cols=95  Identities=9%  Similarity=0.081  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      ++.+++++++++++.+|...+...+|.+.+|+|+++.+.|++.+.+.+++.++++++|+++||+|||+++..+..+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            55678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhH
Q 039825           85 VPRKAETQSHRIPLV   99 (117)
Q Consensus        85 t~l~a~a~s~~~~l~   99 (117)
                      .+++++++|++.+++
T Consensus        89 ~~~~~~~~~~~~l~~  103 (471)
T PRK10504         89 SLFCALSGTLNELLL  103 (471)
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999999988776544

>PRK10133 L-fucose transporter; Provisional

Probab=99.48  E-value=7.5e-13  Score=107.97  Aligned_cols=98  Identities=12%  Similarity=-0.117  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +....++.+.+..++-.+++.+.+...|.+++++|+++.|.|++.+.+.+++.+++++.|+++||+|||+++..++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~  102 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            34556677788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhccccchhhHh
Q 039825           83 VPVPRK---AETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~---a~a~s~~~~l~~  100 (117)
                      ++++++   ++++|+..+++.
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~  123 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVG  123 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHH
Confidence            999885   567888876654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.47  E-value=7.7e-13  Score=108.64  Aligned_cols=97  Identities=5%  Similarity=-0.206  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++++.+...+...+.+.++....++..|.+.+|+|++..|.|++.+.+.+++.+++++.|+++||+|||+++..+.++|+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            46777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhH
Q 039825           83 VPVPRKAETQSHRIPLV   99 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~   99 (117)
                      ++++++++++|+..+++
T Consensus       113 ~~~~~~~~~~s~~~l~~  129 (476)
T PLN00028        113 PAVFCMSLVSSATGFIA  129 (476)
T ss_pred             HHHHHHHHhcCHHHHHH
Confidence            99999999998877654

>TIGR00895 2A0115 benzoate transport

Probab=99.47  E-value=8.6e-13  Score=101.75  Aligned_cols=98  Identities=16%  Similarity=-0.006  Sum_probs=90.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +++|+.+..+.+.++.+.+|....+...|.+.+++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhH
Q 039825           82 PVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~   99 (117)
                      +++..++++++|++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~  110 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLI  110 (398)
T ss_pred             HHHHHHHHHccchHHHHH
Confidence            999999999988876544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.47  E-value=4.1e-13  Score=106.27  Aligned_cols=95  Identities=8%  Similarity=-0.014  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      +.+..+.++.+.-.+.+..+...+|.+++|+|++.+|.|++.+.+.+++.+++|++|+++||+|||+++..+..+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            44566677778888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccchhhHh
Q 039825           86 PRKAETQSHRIPLVA  100 (117)
Q Consensus        86 ~l~a~a~s~~~~l~~  100 (117)
                      +++++++|++.+++.
T Consensus        83 ~l~~~~~~~~~l~~~   97 (382)
T PRK10091         83 AMFTLSSSYLMLAIG   97 (382)
T ss_pred             HHHHHhCcHHHHHHH
Confidence            999999999987765

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.46  E-value=2e-13  Score=104.44  Aligned_cols=88  Identities=7%  Similarity=-0.190  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcc
Q 039825           13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQ   92 (117)
Q Consensus        13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~   92 (117)
                      ++++.+++|+..++.+.|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.++++++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHh
Q 039825           93 SHRIPLVA  100 (117)
Q Consensus        93 s~~~~l~~  100 (117)
                      |++..++.
T Consensus        82 ~~~~~~~~   89 (379)
T TIGR00881        82 SLWVMAAL   89 (379)
T ss_pred             hHHHHHHH
Confidence            98876554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.46  E-value=6.8e-13  Score=104.67  Aligned_cols=99  Identities=8%  Similarity=-0.031  Sum_probs=90.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +|-+|.+.++.+...+..+...+..+.+|.+.+++|+++.+.|++.+++.+++.++++++|+++||+|||+++..+...+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            56677888888888888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      .++.+.+.+++|++.+++.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~  102 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAA  102 (394)
T ss_pred             HHHHHHHHHHccHHHHHHH
Confidence            9999999999888775543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=7.5e-13  Score=108.68  Aligned_cols=99  Identities=18%  Similarity=0.048  Sum_probs=93.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      ++.|..+..+.++.|.-..++.+...++|++.+|+|+|..+.|+++++|.+++++++|+...+.||++||+++.....++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      .++.++|++|+||+.+++.
T Consensus        89 i~~n~l~alAp~f~~Ll~a  107 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLA  107 (394)
T ss_pred             HHHHHHHHHhccHHHHHHH
Confidence            9999999999999997764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.46  E-value=1.4e-13  Score=111.34  Aligned_cols=96  Identities=8%  Similarity=-0.157  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------------------HhCCChhhhHHHHHHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGA----------------------ALHTDPIGLDSLTLFRSIVQSSCYP   59 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~----------------------~~~ls~~q~G~l~s~~~l~~~l~~p   59 (117)
                      +.||.+..++.+++.+++.||..++...+.+++                      |++++..+.|.+.+++.+++.++++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~   94 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI   94 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence            468899999999999999999999999988887                      8999999999999999999999999


Q ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc--cccchh
Q 039825           60 LAAYLFVHHNRAHVIALESNTEPVPVPRKAET--QSHRIP   97 (117)
Q Consensus        60 ~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a--~s~~~~   97 (117)
                      ++|+++||+|||+++..+.++|+++++++.++  .++..+
T Consensus        95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l  134 (465)
T TIGR00894        95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALV  134 (465)
T ss_pred             chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            99999999999999999999999999887654  445443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=2.2e-13  Score=103.83  Aligned_cols=87  Identities=9%  Similarity=-0.137  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825           14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s   93 (117)
                      ++.++++|+..++...|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++++++.++++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         2 VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             eehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhHh
Q 039825           94 HRIPLVA  100 (117)
Q Consensus        94 ~~~~l~~  100 (117)
                      ++.+++.
T Consensus        82 ~~~~~~~   88 (399)
T TIGR00893        82 YVSLYIL   88 (399)
T ss_pred             HHHHHHH
Confidence            8776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.45  E-value=9.3e-13  Score=102.02  Aligned_cols=98  Identities=15%  Similarity=0.026  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++++.+..+....++.........+.+|.+++++|.++.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   81 (385)
T TIGR00710         2 SAKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA   81 (385)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            45555566666667788888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++...+++++|++...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~   99 (385)
T TIGR00710        82 LSSLGLALSNNIETLLVL   99 (385)
T ss_pred             HHHHHHHHHccHHHHHHH
Confidence            999999999988876553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.44  E-value=6.3e-13  Score=106.92  Aligned_cols=89  Identities=11%  Similarity=0.010  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh--------CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAAL--------HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI   74 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~--------~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl   74 (117)
                      ..+++.++++++.+.+++|..+++...|.++++|        +++++|.|++.+++.++..++++++|+++||+|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~   88 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4577888888999999999999999999999988        99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 039825           75 ALESNTEPVPVPRKAET   91 (117)
Q Consensus        75 ~~~~~~~sl~t~l~a~a   91 (117)
                      ..+..++++++++++++
T Consensus        89 ~~~~~l~~i~~~~~~~~  105 (479)
T PRK10077         89 KIAAVLFFISALGSAWP  105 (479)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999888874

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.44  E-value=9.2e-13  Score=101.84  Aligned_cols=93  Identities=9%  Similarity=0.006  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP   86 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~   86 (117)
                      .+.++++.++.+.+...+++++|. +++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            345777888889999999999995 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc-ccchhhHh
Q 039825           87 RKAETQ-SHRIPLVA  100 (117)
Q Consensus        87 l~a~a~-s~~~~l~~  100 (117)
                      ++++++ |++.+++.
T Consensus        83 ~~~~~~~~~~~~~~~   97 (366)
T TIGR00886        83 WAGLAVQSYSVLLLL   97 (366)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            999998 88775543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.44  E-value=1e-12  Score=107.23  Aligned_cols=96  Identities=7%  Similarity=-0.076  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .+|.++..+.++...++.|+..++..+|.+.+++|++.++.|++.+.+.++..+++|++|+++||+|||+++..+.++++
T Consensus        16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            36889899999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhh
Q 039825           83 VPVPRKAETQSHRIPL   98 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l   98 (117)
                      ++++++++++|++.+.
T Consensus        96 ~~~~~~~~~~~~~~l~  111 (455)
T TIGR00892        96 LGMILASFSSNVIELY  111 (455)
T ss_pred             HHHHHHHHhhhHHHHH
Confidence            9999999998888764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=7.5e-13  Score=107.35  Aligned_cols=89  Identities=4%  Similarity=-0.281  Sum_probs=82.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++|.++..+.+.+...++|+..++...|.+.++ |+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+.++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            456677778889999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 039825           83 VPVPRKAETQ   92 (117)
Q Consensus        83 l~t~l~a~a~   92 (117)
                      ++++++++++
T Consensus       105 i~~~~~~~~~  114 (452)
T PRK11273        105 AVMLFMGFVP  114 (452)
T ss_pred             HHHHHHHhhh
Confidence            9999988864

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.43  E-value=1.9e-12  Score=103.61  Aligned_cols=97  Identities=9%  Similarity=-0.076  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      .|+.+..+....+....+.......+|++.+|+|++++|.|+..+++.+++.+++|++|+++||+|||+++..+..++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            35554555555455555665666678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccchhhHh
Q 039825           84 PVPRKAETQSHRIPLVA  100 (117)
Q Consensus        84 ~t~l~a~a~s~~~~l~~  100 (117)
                      +++++++++|++.+++.
T Consensus        98 ~~~~~~~~~~~~~l~~~  114 (394)
T PRK10213         98 SCLLVSFANSFSLLLIG  114 (394)
T ss_pred             HHHHHHHHChHHHHHHH
Confidence            99999999998886654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.43  E-value=1.5e-12  Score=103.32  Aligned_cols=96  Identities=9%  Similarity=-0.193  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      +...+.+.+..+++.++..++.+.+|.+++++|+|+.+.|+..+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   91 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT   91 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34445557777788888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhHh
Q 039825           85 VPRKAETQSHRIPLVA  100 (117)
Q Consensus        85 t~l~a~a~s~~~~l~~  100 (117)
                      +..+++++|++.+++.
T Consensus        92 ~~~~~~~~~~~~l~~~  107 (406)
T PRK15402         92 CLAILLAQSIEQFTLL  107 (406)
T ss_pred             HHHHHHHccHHHHHHH
Confidence            9999999988775543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.42  E-value=2.1e-12  Score=98.26  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      +.++.+++.++..++...+| .+.+++|.++.|.|++.+++.+++.++++++|+++||+|||+++..+..+++++...++
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            35778889999999999999 99999999999999999999999999999999999999999999999999999977777


Q ss_pred             hccccchhhH
Q 039825           90 ETQSHRIPLV   99 (117)
Q Consensus        90 ~a~s~~~~l~   99 (117)
                      +++|++.+++
T Consensus        81 ~~~~~~~~~~   90 (352)
T PF07690_consen   81 FASNFWLLLI   90 (352)
T ss_dssp             HHCCHHHHHH
T ss_pred             hhhhHHHHhh
Confidence            8777764433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.40  E-value=2.9e-12  Score=103.27  Aligned_cols=92  Identities=13%  Similarity=-0.081  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ..+.+..++..++..+..+.+|.+.+++|.+.++.++..+++.++++++++++|+++||+|||+++..+.++|++++.++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            34455567788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhHh
Q 039825           89 AETQSHRIPLVA  100 (117)
Q Consensus        89 a~a~s~~~~l~~  100 (117)
                      ++++|++.+++.
T Consensus        99 ~~a~~~~~l~~~  110 (413)
T PRK15403         99 LFTTSMTQFLIA  110 (413)
T ss_pred             HHcCCHHHHHHH
Confidence            999998776553

>PRK11043 putative transporter; Provisional

Probab=99.40  E-value=4.8e-12  Score=100.07  Aligned_cols=97  Identities=11%  Similarity=-0.054  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .+++.++++.+...+..+-..++.+.+|.+++|+|++++|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   82 (401)
T PRK11043          3 PSKGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA   82 (401)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH
Confidence            34555566655556666667777888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhH
Q 039825           83 VPVPRKAETQSHRIPLV   99 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~   99 (117)
                      ++..++++++|++.+++
T Consensus        83 ~~~~~~~~~~~~~~l~~   99 (401)
T PRK11043         83 LGSLGMLWVESAAQLLV   99 (401)
T ss_pred             HHHHHHHHhcCHHHHHH
Confidence            99999999998877654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=5.5e-12  Score=103.65  Aligned_cols=92  Identities=11%  Similarity=-0.017  Sum_probs=84.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-----CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAAL-----HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIAL   76 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~-----~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~   76 (117)
                      +.+++++.+++++.+++++|.+.++.+.|.+++++     +.+..+.+++.+.+.+++.++++++|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            45778889999999999999999999999998863     4556688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q 039825           77 ESNTEPVPVPRKAETQS   93 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a~s   93 (117)
                      +.+++++++++++++++
T Consensus        92 ~~~~~~v~~~~~~~~~~  108 (502)
T TIGR00887        92 ELIIMIIATVASGLSPG  108 (502)
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999999876

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=3.2e-12  Score=100.82  Aligned_cols=87  Identities=8%  Similarity=-0.036  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ++-+..+.+..++..++..+..+++|. +++++|+|+++.|++.+++.+++.+++|++|+++||+|||+++..+.+++++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            444566778888899999998888886 7899999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhc
Q 039825           84 PVPRKAET   91 (117)
Q Consensus        84 ~t~l~a~a   91 (117)
                      ++..++++
T Consensus        94 ~~~~~~~~  101 (399)
T PRK05122         94 SGLLYLLA  101 (399)
T ss_pred             HHHHHHHh
Confidence            77665553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.37  E-value=8.2e-12  Score=104.19  Aligned_cols=96  Identities=9%  Similarity=-0.007  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ||.+.+..++..+...+..+.+++.+.+.+ |+|+|++|.|++.+++.++++++..+.|++.||+|.|+++..+.+++++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            489999999999999999999999999877 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-----cccchhhHh
Q 039825           84 PVPRKAET-----QSHRIPLVA  100 (117)
Q Consensus        84 ~t~l~a~a-----~s~~~~l~~  100 (117)
                      .+++++++     +|++.+++.
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~  134 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVI  134 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHH
Confidence            99999987     788776653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.35  E-value=1.2e-11  Score=100.19  Aligned_cols=92  Identities=10%  Similarity=-0.173  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l   87 (117)
                      ++++.+..++-+++..+.++++|.+++++|+|++|.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777777888899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHh---ccccchhhH
Q 039825           88 KAE---TQSHRIPLV   99 (117)
Q Consensus        88 ~a~---a~s~~~~l~   99 (117)
                      ++.   ++|++.+++
T Consensus        85 ~~~~~~~~~~~~~l~   99 (410)
T TIGR00885        85 FWPAAEIMNYTLFLV   99 (410)
T ss_pred             HHHHHhhccHHHHHH
Confidence            654   356766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12382 putative transporter; Provisional

Probab=99.34  E-value=8.5e-12  Score=98.39  Aligned_cols=82  Identities=11%  Similarity=-0.080  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ++.++.+.++.+++.+...+..+.+|. +++|+|+|.+|.|++.+++.+++.+++|++|+++||+|||+++..+.+.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL   93 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence            345667777888888887777777775 6889999999999999999999999999999999999999999998888776


Q ss_pred             HHH
Q 039825           84 PVP   86 (117)
Q Consensus        84 ~t~   86 (117)
                      +++
T Consensus        94 ~~~   96 (392)
T PRK12382         94 AGL   96 (392)
T ss_pred             HHH
Confidence            554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.32  E-value=9.9e-12  Score=99.60  Aligned_cols=83  Identities=11%  Similarity=-0.046  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           17 MERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        17 ~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      .|..-...+++++|.+++|+|+|++|.|++.+++.+++.++++++|+++||+|||+++..++.....+......++|++.
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            35566678899999999999999999999999999999999999999999999999877655544443332233367766


Q ss_pred             hhH
Q 039825           97 PLV   99 (117)
Q Consensus        97 ~l~   99 (117)
                      +++
T Consensus        82 l~~   84 (368)
T TIGR00903        82 LLA   84 (368)
T ss_pred             HHH
Confidence            544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.32  E-value=1.2e-11  Score=94.25  Aligned_cols=89  Identities=13%  Similarity=-0.048  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           11 VNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      +.++.+++.+...+....+|...++++.++.|.|++.+++.+++.+++|++|+++||+|||+++..+..+++++..+.++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            55777888888899999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             cc-----ccchhhH
Q 039825           91 TQ-----SHRIPLV   99 (117)
Q Consensus        91 a~-----s~~~~l~   99 (117)
                      +.     |++.+++
T Consensus        84 ~~~~~~~~~~~~~~   97 (365)
T TIGR00900        84 VALLGGLNIWQVYV   97 (365)
T ss_pred             HHHcCCCcHHHHHH
Confidence            77     7666543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.31  E-value=1.2e-11  Score=97.01  Aligned_cols=88  Identities=8%  Similarity=-0.049  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC--------hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTD--------PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES   78 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls--------~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~   78 (117)
                      ..+++.++.+++.+|...++..++.++.+++.+        ..|.|++.+++.+++.++++++|+++||+|||+++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~  108 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA  108 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence            344556677889999999999999999999888        899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccc
Q 039825           79 NTEPVPVPRKAETQSH   94 (117)
Q Consensus        79 ~~~sl~t~l~a~a~s~   94 (117)
                      +++++++.+++++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~  124 (481)
T TIGR00879       109 LLFVIGAILMGLAAFA  124 (481)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999765443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.31  E-value=1.8e-11  Score=103.13  Aligned_cols=92  Identities=8%  Similarity=-0.180  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG-LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q-~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      .++.+|..|.+-|.  |..++++.|++.+|+|+|++| .|.+.++++.+|++++.+.|+++||+|-|+++..+.+.|++.
T Consensus        28 ~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        28 LVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            34445566655554  889999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhH
Q 039825           85 VPRKAETQSHRIPLV   99 (117)
Q Consensus        85 t~l~a~a~s~~~~l~   99 (117)
                      ++++++++|+..+.+
T Consensus       106 t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806       106 WLLLLLGTSVWHMQL  120 (511)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988776554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10054 putative transporter; Provisional

Probab=99.28  E-value=4.8e-11  Score=95.56  Aligned_cols=96  Identities=4%  Similarity=-0.109  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSL-LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~i-l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +++.+.++.++.++..+-... .+.+-+.+++++|+|+.|.|++.+.+.+++.+++|++|+++||+|||+++..+.....
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence            344445555566666666555 4555667788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhH
Q 039825           83 VPVPRKAETQSHRIPLV   99 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~   99 (117)
                      ++.++.++++|++..++
T Consensus        85 ~~~~~~~~~~~~~~~~~  101 (395)
T PRK10054         85 SGFIAIPLVNNVTLVVL  101 (395)
T ss_pred             HHHHHHHHHhHHHHHHH
Confidence            99999999988876544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.27  E-value=6e-11  Score=93.56  Aligned_cols=89  Identities=9%  Similarity=-0.049  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           11 VNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      ..+..+.+..-..+....+|.+++++|.+..+.|++.+.+.+++.+++|+.|+++||+|||+++..+..++.++...+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555557899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhH
Q 039825           91 TQSHRIPLV   99 (117)
Q Consensus        91 a~s~~~~l~   99 (117)
                      ++|++.+++
T Consensus        88 ~~~~~~~~~   96 (392)
T PRK10473         88 AETSSLFLA   96 (392)
T ss_pred             hCcHHHHHH
Confidence            888765443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.27  E-value=2.5e-11  Score=97.15  Aligned_cols=86  Identities=9%  Similarity=-0.044  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ..+.++.+++.+...++....+.+.+|+|.++.+.|++.+++.+.+.+++|++|+++||+|||+++..+..+++++++++
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            45677788888855556666777889999999999999999999999999999999999999999999999999999888


Q ss_pred             Hhcccc
Q 039825           89 AETQSH   94 (117)
Q Consensus        89 a~a~s~   94 (117)
                      +++.+.
T Consensus        86 ~~~~~~   91 (393)
T PRK11195         86 LFGIHP   91 (393)
T ss_pred             HHHHHH
Confidence            776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.27  E-value=4.4e-11  Score=90.15  Aligned_cols=92  Identities=20%  Similarity=0.043  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ..+.++.+.+.++........|.+.+++|.++.|.|++.+...+++.+++|++|+++||+|||+.+..+..+..++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            35667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhHh
Q 039825           89 AETQSHRIPLVA  100 (117)
Q Consensus        89 a~a~s~~~~l~~  100 (117)
                      ++++|+...++.
T Consensus        82 ~~~~~~~~~~~~   93 (352)
T cd06174          82 AFASSLWLLLVG   93 (352)
T ss_pred             HHhccHHHHHHH
Confidence            988787765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.26  E-value=9.8e-11  Score=91.92  Aligned_cols=95  Identities=11%  Similarity=-0.024  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG-----LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESN   79 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q-----~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~   79 (117)
                      ++....+.++.++..+...+..+.+|.+.+++|++..|     .|++.+++.+++.+++|++|+++||+|||+++..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            44556667788888888888888999999999999766     4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhhH
Q 039825           80 TEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        80 ~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .++++..++++++|++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~  112 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLI  112 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHH
Confidence            99999999999888876554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=3.5e-11  Score=97.08  Aligned_cols=88  Identities=5%  Similarity=-0.273  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .||..++.+.+++...+.|+..+....|.+++ +|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            46788888889999999999999999998886 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 039825           83 VPVPRKAET   91 (117)
Q Consensus        83 l~t~l~a~a   91 (117)
                      +++++++++
T Consensus       103 ~~~~~~~~~  111 (438)
T TIGR00712       103 AVMLLMGFV  111 (438)
T ss_pred             HHHHHHhcc
Confidence            999888775

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.22  E-value=1e-10  Score=90.52  Aligned_cols=87  Identities=11%  Similarity=-0.030  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHHHHHHHHHHh
Q 039825           13 LAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA-LESNTEPVPVPRKAE   90 (117)
Q Consensus        13 l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~-~~~~~~sl~t~l~a~   90 (117)
                      +.+++..+...+..+.+|. +++++|+|+++.|++.+++.+...+++|++|+++||+||||.+. .+..+..++..++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            4466677777777776665 78899999999999999999999999999999999999988655 566677788888999


Q ss_pred             ccccchhhH
Q 039825           91 TQSHRIPLV   99 (117)
Q Consensus        91 a~s~~~~l~   99 (117)
                      ++|++.+++
T Consensus        84 ~~~~~~l~~   92 (375)
T TIGR00899        84 NRNYFLLLV   92 (375)
T ss_pred             cchHHHHHH
Confidence            999887554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.19  E-value=2.6e-10  Score=90.93  Aligned_cols=85  Identities=11%  Similarity=-0.089  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      -||.+....++.++...-.......++++.+|+|++++|.|++.+.+.+++.+++|++|+++||+|||+++..+..++++
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV   90 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            35666666777666655555444556677789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 039825           84 PVPRK   88 (117)
Q Consensus        84 ~t~l~   88 (117)
                      +++++
T Consensus        91 ~~~~~   95 (402)
T TIGR00897        91 GHAAF   95 (402)
T ss_pred             HHHHH
Confidence            88765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=9.4e-11  Score=97.22  Aligned_cols=99  Identities=9%  Similarity=-0.183  Sum_probs=92.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +.|+++++.+.+||..-|+-|...+.+.|.++++.++|.+|+|.+.+.+.++|.++-.+.|.++||.|-|+.+.+++++-
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils  104 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence            35777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHh
Q 039825           82 PVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~a~s~~~~l~~  100 (117)
                      ++..++.++++|...+.+.
T Consensus       105 ai~nil~Gfs~s~~~~~~l  123 (448)
T COG2271         105 AIVNILFGFSPSLFLFAVL  123 (448)
T ss_pred             HHHHHHHhhhhHHHHHHHH
Confidence            9999999999877765554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.16  E-value=5.6e-10  Score=90.41  Aligned_cols=88  Identities=8%  Similarity=-0.084  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch-HHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLL-PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-AHVIALESNTEPVPVPRK   88 (117)
Q Consensus        11 l~l~~~~d~~D~~il-~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-r~vl~~~~~~~sl~t~l~   88 (117)
                      +++-.++++.-..+. +++.+.+++++|++..|.|++.+++.+++.+++|++|+++||+|| |+++..+.+.+++++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            444555566655644 788888899999999999999999999999999999999999965 889999999999999999


Q ss_pred             Hhccccchhh
Q 039825           89 AETQSHRIPL   98 (117)
Q Consensus        89 a~a~s~~~~l   98 (117)
                      ++++|++.++
T Consensus        87 ~~~~~~~~~~   96 (418)
T TIGR00889        87 AQVTTPAGMF   96 (418)
T ss_pred             HHhcCHHHHH
Confidence            9988876543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=2e-10  Score=89.52  Aligned_cols=78  Identities=8%  Similarity=-0.123  Sum_probs=71.5

Q ss_pred             HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      .+..+.+|.+.+++|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+.+++...+++++|++..++.
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            455678999999999999999999999999999999999999999999999999999999999999999888775544

>TIGR00898 2A0119 cation transport protein

Probab=99.12  E-value=4.4e-11  Score=97.36  Aligned_cols=74  Identities=14%  Similarity=-0.042  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhCCC---hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           27 GVYKEVGAALHTD---PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        27 ~~lp~i~~~~~ls---~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      ...+.+++||+++   +.+.|++.+++.+++.++++++|+++||+|||+++..+.++++++++++++++|++.+++.
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF  186 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            5678999999999   9999999999999999999999999999999999999999999999999999999886654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.12  E-value=9.1e-10  Score=90.93  Aligned_cols=95  Identities=7%  Similarity=-0.130  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH--hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEV-GAA--LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALES   78 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i-~~~--~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~   78 (117)
                      ++.+.+..+.++.++|.+-...+...+|.. .++  +|++..|.|.+.+.+.+++.++++++|+++|| +|||+++..+.
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence            445666777788888888877655555544 555  99999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHhccccchh
Q 039825           79 NTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        79 ~~~sl~t~l~a~a~s~~~~   97 (117)
                      .+++++.++.++++++..+
T Consensus        87 ~~~~~g~~~~~~~~~~~~~  105 (475)
T TIGR00924        87 IVLMLGHFMLAMSIYPDLI  105 (475)
T ss_pred             HHHHHHHHHHHhcccHhHH
Confidence            9999999999998776554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00896 CynX cyanate transporter

Probab=99.11  E-value=2.4e-10  Score=89.05  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=66.5

Q ss_pred             HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      ..+++++|.+++|+|++++|.|++.+.+.+++.+++++.|+++||+|||+++..+.....++.+.+ .+++.+.+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l   90 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL   90 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            466788999999999999999999999999999999999999999999999999998888887777 55666654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.11  E-value=4.4e-10  Score=86.37  Aligned_cols=81  Identities=10%  Similarity=-0.112  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhC--CChhhhHHHHHH-----HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825           15 GIMERADVSLLPGVYKEVGAALH--TDPIGLDSLTLF-----RSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus        15 ~~~d~~D~~il~~~lp~i~~~~~--ls~~q~G~l~s~-----~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l   87 (117)
                      .++|++|+..++...+.+.++..  .++++.|.+.+.     ..++..++++++|+++||+|||+++..+.+++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999854  567777776653     23333468999999999999999999999999999999


Q ss_pred             HHhccccc
Q 039825           88 KAETQSHR   95 (117)
Q Consensus        88 ~a~a~s~~   95 (117)
                      +++++|+.
T Consensus        82 ~~~~~~~~   89 (394)
T TIGR00883        82 IGLLPSYA   89 (394)
T ss_pred             HhhCCChh
Confidence            99999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.11  E-value=5.3e-11  Score=102.00  Aligned_cols=88  Identities=9%  Similarity=-0.026  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      +..++.+.++.+.+.++...++.+++.++++|+++.+|.|++.+.+.++++++++++|+++||+|||+.+.++.++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg  111 (633)
T TIGR00805        32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG  111 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence            33446666788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q 039825           85 VPRKAETQ   92 (117)
Q Consensus        85 t~l~a~a~   92 (117)
                      ++++++++
T Consensus       112 ~ll~alph  119 (633)
T TIGR00805       112 SFLLSLPH  119 (633)
T ss_pred             HHHHhChH
Confidence            99999864

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.10  E-value=1.2e-09  Score=90.79  Aligned_cols=93  Identities=8%  Similarity=-0.109  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNT   80 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~   80 (117)
                      ++++.++.+.+.-+.|.+-.. +.+.+...+++++|+++++.+++.+++.....+..+++|+++|| +||||++..+..+
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            456667777777777776666 44566778899999999999999999998899999999999999 9999999999999


Q ss_pred             HHHHHHHHHhccccc
Q 039825           81 EPVPVPRKAETQSHR   95 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~   95 (117)
                      ++++++.++++++..
T Consensus        91 ~~~g~~~~~~~~~~~  105 (489)
T PRK10207         91 LAIGYFMTGMSLLKP  105 (489)
T ss_pred             HHHHHHHHHHhccch
Confidence            999999999987633

>PTZ00207 hypothetical protein; Provisional

Probab=99.07  E-value=2.3e-09  Score=91.97  Aligned_cols=87  Identities=10%  Similarity=-0.005  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +||.++.......... ......+...|++++++|+|.+|++++.++. ..+..++++.|+++||+|||+++.++.++|+
T Consensus        25 ~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         25 RRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            5666555444333322 3344677888999999999999999999874 4556788889999999999999999999999


Q ss_pred             HHHHHHHhc
Q 039825           83 VPVPRKAET   91 (117)
Q Consensus        83 l~t~l~a~a   91 (117)
                      +++++++++
T Consensus       103 iG~ll~ala  111 (591)
T PTZ00207        103 LGTLLFALT  111 (591)
T ss_pred             HHHHHHHHH
Confidence            999999997

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.06  E-value=2.6e-09  Score=85.73  Aligned_cols=77  Identities=8%  Similarity=-0.022  Sum_probs=69.5

Q ss_pred             HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .+++.+-+.+++++|+|..+.|++.+...+.+.+.++++|+++||+|||+++..+..+++++.+++++++|++.+.+
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~  104 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45566666788999999999999999999999999999999999999999999999999999999999988876544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.06  E-value=2.3e-09  Score=85.68  Aligned_cols=81  Identities=9%  Similarity=-0.192  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ++.++.+.+..+++.+-.. ..+.+-..+++++|+|+.|.|.+.+++.+++.+++|++|+++||+|||+++..+..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3444555566666766554 566666677888999999999999999999999999999999999999999887766665


Q ss_pred             HH
Q 039825           84 PV   85 (117)
Q Consensus        84 ~t   85 (117)
                      ..
T Consensus        89 ~~   90 (420)
T PRK09528         89 LF   90 (420)
T ss_pred             HH
Confidence            54

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=99.01  E-value=4.1e-09  Score=70.01  Aligned_cols=80  Identities=11%  Similarity=-0.141  Sum_probs=75.1

Q ss_pred             HHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825           19 RADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL   98 (117)
Q Consensus        19 ~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l   98 (117)
                      ++-|....+++|.+++|.++|.+|.|++.+++.++|.+|++...++.+|.++++++..+++.-.+.+++|+++++...+.
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            46688899999999999999999999999999999999999999999999999999999999999999999998887654

Note that many members are hypothetical proteins.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.00  E-value=9.6e-10  Score=87.66  Aligned_cols=80  Identities=13%  Similarity=-0.018  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           10 LVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        10 ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      .+.++.+++.+...+....+|.+.++++.++.|.|++.+.+.+++.++++++|+++||+|||+++..+..+++++....+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~  100 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA  100 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence            44555677888888889999999999999999999999999999999999999999999999999988888777765544

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.95  E-value=1e-08  Score=81.54  Aligned_cols=90  Identities=7%  Similarity=-0.070  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH-HHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGV-YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI-ALESNTEPVPVP   86 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~-lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl-~~~~~~~sl~t~   86 (117)
                      ....++.+++.+-.....+. -+.+++|+|+++++.|++.+...+...+.+++.|.++||+||||.+ ..+..++++++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            34455566777776655554 4457899999999999998776665555555555559999999874 566777888888


Q ss_pred             HHHhccccchhh
Q 039825           87 RKAETQSHRIPL   98 (117)
Q Consensus        87 l~a~a~s~~~~l   98 (117)
                      +.+++++++.++
T Consensus        98 ~~~~~~~~~~l~  109 (393)
T PRK15011         98 LFAWNRNYFVLL  109 (393)
T ss_pred             HHHHhhHHHHHH
Confidence            889998887753

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.94  E-value=1.8e-08  Score=79.88  Aligned_cols=78  Identities=8%  Similarity=-0.144  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      ++.+...+++.+.-...+.+.+| .+++++|+++.|.|++.+++.+++.+++|++|+++||+|||+++..+...+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            45666677777777666655554 5577899999999999999999999999999999999999999988776665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.90  E-value=2.2e-08  Score=79.45  Aligned_cols=90  Identities=12%  Similarity=-0.026  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH----HHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH----VIALESNTEPVP   84 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~----vl~~~~~~~sl~   84 (117)
                      ..+.+.++..++-..+..+.+|.+.+|+|+|.+|.|++.+++.++..+++|++|.++||+||+.    ++..+..++.+ 
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            3466777888887788888899999999999999999999999999999999999999999843    33333333333 


Q ss_pred             HHHHHhccccchhhHh
Q 039825           85 VPRKAETQSHRIPLVA  100 (117)
Q Consensus        85 t~l~a~a~s~~~~l~~  100 (117)
                       ..+++++|++.+++.
T Consensus        86 -~~~~~~~~~~~l~~~  100 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIA  100 (382)
T ss_pred             -HHHHhhhhHHHHHHH
Confidence             244566777765443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.85  E-value=2.8e-08  Score=87.97  Aligned_cols=88  Identities=8%  Similarity=-0.148  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhh--hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH--
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIG--LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR--   87 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q--~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l--   87 (117)
                      ....+.+..|......+.+.+..+++.+.++  .|++.+++.+++.++++++|+++||+|||+++..+.+++.+.+++  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~   95 (1146)
T PRK08633         16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIV   95 (1146)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            3333446678788888888888888876554  789999999999999999999999999999999988766555544  


Q ss_pred             -HHhccccchhhH
Q 039825           88 -KAETQSHRIPLV   99 (117)
Q Consensus        88 -~a~a~s~~~~l~   99 (117)
                       +.++++++.+++
T Consensus        96 ~~~~~~~~~~l~~  108 (1146)
T PRK08633         96 LAYYLGWFWLAFA  108 (1146)
T ss_pred             HHHHHccHHHHHH
Confidence             444466665444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3.5e-08  Score=81.63  Aligned_cols=101  Identities=16%  Similarity=-0.064  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +-+..++++..-.++=++.......++|.+++.|++|..|.+++..++..+|++++.+.|++.+|+|+|+-+++|+.++.
T Consensus        10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a   89 (422)
T COG0738          10 SVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA   89 (422)
T ss_pred             CceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence            34455666666667777777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhccccchhhHhhcC
Q 039825           83 VPVPRK---AETQSHRIPLVALFP  103 (117)
Q Consensus        83 l~t~l~---a~a~s~~~~l~~~~~  103 (117)
                      ++..+.   +-..+|..+++.+|+
T Consensus        90 vg~~lF~pAa~~~~y~~FL~~lFi  113 (422)
T COG0738          90 VGAALFWPAASSKSYGFFLVALFI  113 (422)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHH
Confidence            999887   355777778887775

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.81  E-value=3e-08  Score=83.56  Aligned_cols=94  Identities=11%  Similarity=-0.055  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-C-------CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAAL-H-------TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI   74 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~-~-------ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl   74 (117)
                      ++-+.+++.+.|.+.|.+|..+++.+.|.+.... |       .+..-.+.+..+.+++...||.++|+++||+|||+++
T Consensus        38 ~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY  117 (538)
T KOG0252|consen   38 KHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY  117 (538)
T ss_pred             HHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            4556778889999999999999999999998874 2       3345677777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccch
Q 039825           75 ALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        75 ~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      ...+++--++|++|+++.+...
T Consensus       118 G~~liImIi~t~~~~~s~~~~~  139 (538)
T KOG0252|consen  118 GKELIIMIICSALSGLSVGTTS  139 (538)
T ss_pred             hHHHHHHHHHHHHhccCCCCCC
Confidence            9999999999999998755544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.76  E-value=1.7e-07  Score=77.94  Aligned_cols=88  Identities=14%  Similarity=-0.066  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLL-PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPV   83 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il-~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl   83 (117)
                      +.+..+.+..+.+.+-...+ +.+...+.+++|+++++.+++.+.+........+++|+++|| +|||+++..+.+++++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            33455556666666665444 445666679999999999999988877767777899999999 5999999999999999


Q ss_pred             HHHHHHhccc
Q 039825           84 PVPRKAETQS   93 (117)
Q Consensus        84 ~t~l~a~a~s   93 (117)
                      +..+++++++
T Consensus       101 g~~l~~~~~~  110 (500)
T PRK09584        101 GYALVAWSGH  110 (500)
T ss_pred             HHHHHHHhcc
Confidence            9999988743

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.76  E-value=1.5e-07  Score=71.89  Aligned_cols=82  Identities=18%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcc
Q 039825           13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQ   92 (117)
Q Consensus        13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~   92 (117)
                      +..+....-........++..+++|.++.+.+.+.+.+.++..++++++|+++||+|||+.+..+..+..++..+..+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T TIGR00890       212 LSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP  291 (377)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            33333333334444455667788999999999999999999999999999999999999999999888888887777765


Q ss_pred             cc
Q 039825           93 SH   94 (117)
Q Consensus        93 s~   94 (117)
                      +.
T Consensus       292 ~~  293 (377)
T TIGR00890       292 ML  293 (377)
T ss_pred             cc
Confidence            43

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.75  E-value=1.5e-07  Score=61.03  Aligned_cols=71  Identities=18%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ..-+++-+.-.+.+-+-+|...++.|+|+.|.|.+.++..+...+++|++|+++||+||++.+.....+++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~~   76 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFMA   76 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHh
Confidence            33445555555555555666677899999999999999999999999999999999999999888776543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.75  E-value=1.3e-07  Score=78.25  Aligned_cols=98  Identities=12%  Similarity=-0.081  Sum_probs=91.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      ..+++.+++-.+...+..+-..+.+++.+.+++|+|+|+.|.+++.++..+.-++.-.+.|.+.||||-|++...+.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccc---hhhH
Q 039825           82 PVPVPRKAETQSHR---IPLV   99 (117)
Q Consensus        82 sl~t~l~a~a~s~~---~~l~   99 (117)
                      .+.++..+++.++.   ++++
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~  110 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLV  110 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHH
Confidence            99999999997777   5444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4e-08  Score=82.86  Aligned_cols=96  Identities=8%  Similarity=-0.038  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      |.+++..++.+.+.+-=....+.+.++++++++-+..|.+|+.++....+.+.+|+.+.+.||||.|.+.+.|.++.+++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            55566666777776666677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhHh
Q 039825           85 VPRKAETQSHRIPLVA  100 (117)
Q Consensus        85 t~l~a~a~s~~~~l~~  100 (117)
                      .++++|++|.++++++
T Consensus       125 ~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen  125 LLLSSFATSLWQLYLT  140 (509)
T ss_pred             HHHHHHHhhHHHHHHH
Confidence            9999999999998775

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.70  E-value=2.7e-08  Score=81.99  Aligned_cols=68  Identities=7%  Similarity=-0.224  Sum_probs=62.8

Q ss_pred             HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           33 GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        33 ~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      .+..+.+.....+..+++.+|..+|+.++|+++||+|||+++..++++..++..++++++|++.+.++
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~  177 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIF  177 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            35567788888999999999999999999999999999999999999999999999999999997765

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.70  E-value=3.6e-07  Score=77.00  Aligned_cols=87  Identities=10%  Similarity=-0.080  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVY-KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTEP   82 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~l-p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~s   82 (117)
                      ++.+..++..-+.+.+-...+...+ ..+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++..+..+..
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~   87 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA   87 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            4444555555566666555454444 455778999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHhc
Q 039825           83 VPVPRKAET   91 (117)
Q Consensus        83 l~t~l~a~a   91 (117)
                      ++.+++++.
T Consensus        88 lg~lll~~~   96 (493)
T PRK15462         88 IGHVVLGAS   96 (493)
T ss_pred             HHHHHHHHh
Confidence            887666653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=1.1e-07  Score=78.84  Aligned_cols=93  Identities=16%  Similarity=0.021  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHH--HHHHhHHHHHHHHHh-----CCCh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825            7 TMALVNLAGIMERAD--VSLLPGVYKEVGAAL-----HTDP--IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE   77 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D--~~il~~~lp~i~~~~-----~ls~--~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~   77 (117)
                      ......++.+.-+.|  ....+.+...++++.     ..+.  ++.+++.++..++.+++++++|+++|++|||+.+.++
T Consensus        46 ~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~  125 (513)
T KOG0254|consen   46 LALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA  125 (513)
T ss_pred             HHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334445666666666  556667777777743     2222  3559999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccchhhH
Q 039825           78 SNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        78 ~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .+++.++.+++++|+|++.+.+
T Consensus       126 ~~~~~iG~ii~~~a~~~~~l~~  147 (513)
T KOG0254|consen  126 VVLFLIGAIIIALAPSWYQLIV  147 (513)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999888665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.68  E-value=3.9e-09  Score=84.54  Aligned_cols=90  Identities=13%  Similarity=0.023  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHH--HHhCCCh---------hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYKEVG--AALHTDP---------IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESN   79 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~--~~~~ls~---------~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~   79 (117)
                      ..++.+.+++|...++.+.+...  .++..+.         .+.+++.++..++..+|++++|+++||+|||+.+..+..
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            45666999999999988777766  2333332         346889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc---ccchhhHh
Q 039825           80 TEPVPVPRKAETQ---SHRIPLVA  100 (117)
Q Consensus        80 ~~sl~t~l~a~a~---s~~~~l~~  100 (117)
                      +..++++++++++   |++.+.+.
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~  108 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIG  108 (451)
T ss_pred             cccccccccccccccccccccccc
Confidence            9999999999999   77765543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.66  E-value=4.7e-07  Score=72.04  Aligned_cols=68  Identities=9%  Similarity=-0.047  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      -..+++++|+++.+.|.+.+....+..++.+++|+++||+|||+.+..+.....+......++++...
T Consensus       240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (393)
T PRK15011        240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI  307 (393)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33567889999999999988887888889999999999999999888776655554444445555443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.65  E-value=1.8e-07  Score=72.76  Aligned_cols=70  Identities=10%  Similarity=-0.107  Sum_probs=58.2

Q ss_pred             HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHHH-HHHHHHHHHHHHHHHHhcccc
Q 039825           23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAHV-IALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~v-l~~~~~~~sl~t~l~a~a~s~   94 (117)
                      .+++.++|.+.+|+|+|.+|.|++.+. .+...+ ++++|.++||+     ||||. +..+....++++.+++++++.
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            467788999999999999999999766 455554 99999999998     89987 567888888888888887543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.65  E-value=2.3e-07  Score=79.91  Aligned_cols=86  Identities=14%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      ++...-.++-....+.+++.|.+|+|- ..+..|+.++..++.+++.|+.|+|+|.||||++++.+.++.-++++.++-|
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            333333444444556778999999995 4789999999999999999999999999999999999999999999999999


Q ss_pred             cccchhh
Q 039825           92 QSHRIPL   98 (117)
Q Consensus        92 ~s~~~~l   98 (117)
                      +|...+.
T Consensus       129 ~~~~~~i  135 (599)
T PF06609_consen  129 QNMNTFI  135 (599)
T ss_pred             CcHHHHH
Confidence            8877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.63  E-value=9e-07  Score=66.64  Aligned_cols=89  Identities=11%  Similarity=-0.102  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH-HHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAAL-HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH-VIALESNTEPVPVP   86 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~-~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~-vl~~~~~~~sl~t~   86 (117)
                      ....+..++............|.+.++. |.++.+.|.+.+...++..++++++|++.||+|||+ ++..+..+..++..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3444455555666666666677776665 999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHhccccchh
Q 039825           87 RKAETQSHRIP   97 (117)
Q Consensus        87 l~a~a~s~~~~   97 (117)
                      ..++.++.+..
T Consensus       258 ~~~~~~~~~~~  268 (352)
T cd06174         258 LLALAPSLALL  268 (352)
T ss_pred             HHHHhccHHHH
Confidence            88887775443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.61  E-value=1.7e-07  Score=77.97  Aligned_cols=98  Identities=9%  Similarity=-0.109  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      -+|........+|+-|.+.....+.+.|.+...|+.+..|..++...-+.++.+++..||..+|++|||+.+.....+-.
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~  154 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG  154 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccchhhHh
Q 039825           83 VPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        83 l~t~l~a~a~s~~~~l~~  100 (117)
                      ++....+.++|+..+.++
T Consensus       155 v~~~is~~spnf~~L~~f  172 (528)
T KOG0253|consen  155 VFGVISGASPNFASLCVF  172 (528)
T ss_pred             HHHHhhcCCCCeehhhHH
Confidence            999999999999886553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.60  E-value=7.9e-07  Score=72.48  Aligned_cols=77  Identities=10%  Similarity=-0.149  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      .++.+.+..++.+.....+..-.| .+++++|++..|.++..+...++..++++++|+++||+|||+.+........+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~  336 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALI  336 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            355666666666666655555566 56678999999999999999999999999999999999999877655444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.59  E-value=4.1e-07  Score=81.29  Aligned_cols=92  Identities=10%  Similarity=-0.110  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH---HHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVY-KEVGAALHTDPIG-LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA---LESNTEPV   83 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~l-p~i~~~~~ls~~q-~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~---~~~~~~sl   83 (117)
                      +...++.+-|++++..+..+. ..+..+.+.+... .++..+++.+.+++++|++|+++||||||+++.   .+.+++.+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            333555566677777665544 4566666555544 677778999999999999999999999999753   23334444


Q ss_pred             HHHHHHhccccchhhHh
Q 039825           84 PVPRKAETQSHRIPLVA  100 (117)
Q Consensus        84 ~t~l~a~a~s~~~~l~~  100 (117)
                      ....+..++|++.+++.
T Consensus        98 ~~~~~~~~~s~~~l~~~  114 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAA  114 (1140)
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            44444444677765554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.59  E-value=6.7e-07  Score=70.81  Aligned_cols=82  Identities=10%  Similarity=-0.134  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH----HHHHHHHHHHHHHHHHHHh
Q 039825           15 GIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA----HVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        15 ~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr----~vl~~~~~~~sl~t~l~a~   90 (117)
                      ++.-..-..++.+.+|...+|+|.|..|.|++.+++.+++.+++|++|+++||+|||    +.+..+....++  ..+..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~--~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV--AFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH--HHHHh
Confidence            444444457777888889999999999999999999999999999999999999983    333333322222  23344


Q ss_pred             ccccchhh
Q 039825           91 TQSHRIPL   98 (117)
Q Consensus        91 a~s~~~~l   98 (117)
                      ++|++.++
T Consensus        91 ~~~~~~l~   98 (382)
T PRK11128         91 AHSFWLLF   98 (382)
T ss_pred             cccHHHHH
Confidence            56666644

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.54  E-value=2.1e-06  Score=67.77  Aligned_cols=72  Identities=11%  Similarity=-0.063  Sum_probs=58.2

Q ss_pred             HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825           24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR   95 (117)
Q Consensus        24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~   95 (117)
                      .+....|.+.++.|.+..+.|.+.+...++..+++++.|+++||+|||+.+..+.....++.....+.++.+
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFA  309 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            334446777888999999999999999999999999999999999999998877666666655555555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.54  E-value=2.4e-06  Score=65.58  Aligned_cols=73  Identities=14%  Similarity=-0.000  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      +..+.+..++...-...+....|.+ ++++|.+..+.+.+.+...++..++++++|+++||+|||+.+..+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            3444444555555445555555555 477899999999999999999999999999999999999987754433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.52  E-value=2.7e-07  Score=76.48  Aligned_cols=69  Identities=16%  Similarity=-0.034  Sum_probs=59.6

Q ss_pred             HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .+.++-+.+..-.|.+.+.|++.|++++|.||.++||+|||.++..|+..-++...+-+.+.|+..+++
T Consensus        58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~  126 (451)
T KOG2615|consen   58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVL  126 (451)
T ss_pred             hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556677899999999999999999999999999999999999999999999999999944444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.52  E-value=2.4e-07  Score=73.63  Aligned_cols=75  Identities=8%  Similarity=-0.035  Sum_probs=63.4

Q ss_pred             HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHH-HHHHHHHHHHHHHHHHHhcccc
Q 039825           20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAH-VIALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~-vl~~~~~~~sl~t~l~a~a~s~   94 (117)
                      ......+.+.+.+.+++|+++++.|.+.++..+..++.+|+.|+++||    +|||| .+..+...++++.+++.++++.
T Consensus        14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~   93 (437)
T TIGR00792        14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF   93 (437)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence            334455677888899999999999999999999999999999999998    67754 6778888899888888877654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.52  E-value=1.1e-06  Score=70.25  Aligned_cols=80  Identities=10%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             HHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      +..+.. .+..+.+..++.+.+..+.|.+.++..++..++++++|+++||+|||+.+..+.++.++...+.++++|.+.+
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~  318 (420)
T PRK09528        240 DVFDQQ-FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEV  318 (420)
T ss_pred             HHHHHH-HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            334433 3333444444457788899999999999999999999999999999999999999999998889888887754


Q ss_pred             h
Q 039825           98 L   98 (117)
Q Consensus        98 l   98 (117)
                      .
T Consensus       319 ~  319 (420)
T PRK09528        319 S  319 (420)
T ss_pred             H
Confidence            3

>PRK03699 putative transporter; Provisional

Probab=98.52  E-value=2.3e-06  Score=67.97  Aligned_cols=87  Identities=6%  Similarity=-0.050  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l   87 (117)
                      ..+.++.++...-...+...+|.+ ++++|++..|.|.+.+.+.++..++.++.|+++||+|||+++..+..+..+...+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            344444444444334444445555 4678999999999999999999999999999999999999988777666655555


Q ss_pred             HHhccccc
Q 039825           88 KAETQSHR   95 (117)
Q Consensus        88 ~a~a~s~~   95 (117)
                      ..+++|..
T Consensus       288 ~~~~~~~~  295 (394)
T PRK03699        288 FVNTDDPS  295 (394)
T ss_pred             HHHcCCch
Confidence            55555543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.51  E-value=2.7e-06  Score=64.78  Aligned_cols=70  Identities=9%  Similarity=-0.091  Sum_probs=60.0

Q ss_pred             HHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825           24 LLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        24 il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s   93 (117)
                      ......|...++ +|.+..+.|.+.+...++..+++++.|++.||+|||+++..+....+++....++.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP  299 (365)
T ss_pred             HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch
Confidence            333566777665 8999999999999999999999999999999999999999888888888777777664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.50  E-value=1.1e-06  Score=73.82  Aligned_cols=91  Identities=11%  Similarity=-0.043  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchHHHHHHH-
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRAHVIALE-   77 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr~vl~~~-   77 (117)
                      .+|+.+.+.+...-++..-....+. ++++.+++|.++.+.+.+..+..+...+.+|++|+++|    |+||||++..+ 
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~-l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g   80 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSL-LTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG   80 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH
Confidence            4677777777766666554444455 55567889999999999999999999999999999999    59999998875 


Q ss_pred             HHHHHHHHHHHHhcccc
Q 039825           78 SNTEPVPVPRKAETQSH   94 (117)
Q Consensus        78 ~~~~sl~t~l~a~a~s~   94 (117)
                      ...-.++..+.+++.+.
T Consensus        81 ~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        81 AALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHhCchh
Confidence            55555566667776553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.50  E-value=1.8e-06  Score=69.89  Aligned_cols=63  Identities=8%  Similarity=0.009  Sum_probs=52.5

Q ss_pred             hHHHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           26 PGVYKEVG-AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        26 ~~~lp~i~-~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ...+|... +++|.+..+.|.+.+...++..++++++|+++||+|||+++..+..+..+..+..
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  358 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPV  358 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            34456655 6899999999999999999999999999999999999999888776666554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.49  E-value=3.1e-06  Score=65.69  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=49.9

Q ss_pred             HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825           24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus        24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      .....-+.+++++|++..+.|.+.+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~  316 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL  316 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence            333334455678999999999999999999999999999999999999998887765533

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.47  E-value=3.4e-06  Score=66.91  Aligned_cols=73  Identities=7%  Similarity=-0.008  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      ...|...+|.|.++.+.|.+.+...++..++.+++|++.||+|.|+++.++.+..++.-.+.++++|.+.+++
T Consensus       226 ~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T TIGR00902       226 GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            3445555679999999999999999999999999999999999999999999999999989998888776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=98.47  E-value=5.1e-06  Score=64.04  Aligned_cols=70  Identities=11%  Similarity=-0.107  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE   77 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~   77 (117)
                      ...+.+..++...-...+....|.+.++.|.+..+.|.+.+...++..++.+++|+++||+|||+.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL  321 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            3444444555555555566667888999999999999999999999999999999999999999554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.46  E-value=3.3e-06  Score=66.86  Aligned_cols=70  Identities=11%  Similarity=0.021  Sum_probs=61.1

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      |...+|.|.+..+.|.+.+...++..+.+.+.|++.||+|+|+++..+....++..++.++++|.+.+.+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIV  298 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4444679999999999999999999999999999999999999999999999988888888888776544

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.45  E-value=3e-06  Score=65.52  Aligned_cols=67  Identities=12%  Similarity=-0.040  Sum_probs=53.2

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      ..+++++|.++.+.|.+.+.......+++++.|+++||+|||+++..+.....+...+..+.++.+.
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
T TIGR00899       224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWA  290 (375)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999988888888889999999999999999988877766665555555555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.44  E-value=5.2e-06  Score=68.28  Aligned_cols=57  Identities=14%  Similarity=-0.041  Sum_probs=46.6

Q ss_pred             hHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825           26 PGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus        26 ~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ...+|. +++++|.+..+.+...+...++..++++.+|+++||+|||+++..+.....
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            334555 457789999888888888899999999999999999999998887765443

>TIGR00897 2A0118 polyol permease family

Probab=98.43  E-value=4.3e-06  Score=66.72  Aligned_cols=67  Identities=6%  Similarity=-0.153  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA   75 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~   75 (117)
                      +...+..++.......+....|...++.|.+..+.+.+.+...++..++++.+|+++||+|||+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            3444555556666666666778888889999999999999999999999999999999999988653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.42  E-value=5e-06  Score=65.77  Aligned_cols=75  Identities=9%  Similarity=-0.175  Sum_probs=52.9

Q ss_pred             HHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           22 VSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        22 ~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      ........|.++++.|.+..+.|.+.+...++..+++++.|+++||+|||++.............+..++++.+.
T Consensus       222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  296 (390)
T PRK03545        222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWH  296 (390)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            344455556667778999999999999999999999999999999999987655443332222223344444443

>TIGR00896 CynX cyanate transporter

Probab=98.42  E-value=5.8e-06  Score=64.39  Aligned_cols=70  Identities=13%  Similarity=0.010  Sum_probs=56.1

Q ss_pred             HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhccc
Q 039825           24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~sl~t~l~a~a~s   93 (117)
                      .+...+|...++.|.+..+.|.+.+...++..++++++|++.||+ +||+.+..+..+..++...+.++.+
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM  285 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            334456777778899999999999999999999999999999999 6777777777777776666655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.41  E-value=4.3e-06  Score=69.33  Aligned_cols=87  Identities=10%  Similarity=-0.023  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHHH-HHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAHV-IAL   76 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~v-l~~   76 (117)
                      ++||...++. .++..++.....+..+|...++.|.+.+|+|.+ +.....+ ++.+++|.++||+     |||+. +..
T Consensus        10 ~~~~~~~~~~-l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLI-LGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHH
Confidence            4455544444 445688888899999999999999999999997 3344444 6899999999999     99985 668


Q ss_pred             HHHHHHHHHHHHHhcc
Q 039825           77 ESNTEPVPVPRKAETQ   92 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a~   92 (117)
                      +.+..++++..+++++
T Consensus        87 ~~i~~~~~~~~~a~~~  102 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE  102 (491)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            8888888888888864

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.39  E-value=4.5e-06  Score=65.46  Aligned_cols=85  Identities=7%  Similarity=-0.064  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      ++.++...+.++........+....|.+.+++|.+..+.+.......++..++++++|+++||+|||+.+..+..+..++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44555555555555554455666778888999999999999999999999999999999999999999999888877777


Q ss_pred             HHHHH
Q 039825           85 VPRKA   89 (117)
Q Consensus        85 t~l~a   89 (117)
                      .+..+
T Consensus       363 ~~~~~  367 (481)
T TIGR00879       363 LFVLG  367 (481)
T ss_pred             HHHHH
Confidence            66665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.39  E-value=4.3e-06  Score=70.84  Aligned_cols=84  Identities=10%  Similarity=0.015  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      |.+.+-.++++.++..+-..+..+.++-+..+..-|+.+.|++..+..+-+.+.++++|.++||++||++++.+-++-.+
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~   87 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRAL   87 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            34556677888888888888888888888888888999999999999999999999999999999999999988877665


Q ss_pred             HHHH
Q 039825           84 PVPR   87 (117)
Q Consensus        84 ~t~l   87 (117)
                      ..+.
T Consensus        88 ~~~~   91 (524)
T PF05977_consen   88 VALL   91 (524)
T ss_pred             HHHH
Confidence            5443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=98.38  E-value=7.6e-06  Score=63.61  Aligned_cols=66  Identities=3%  Similarity=-0.169  Sum_probs=52.2

Q ss_pred             HhHHHHHHHHHhCCChhhhHHHHHHHH-HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           25 LPGVYKEVGAALHTDPIGLDSLTLFRS-IVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        25 l~~~lp~i~~~~~ls~~q~G~l~s~~~-l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      +....|...++.|++..+.|.+.++.. ++..++.+++|+++||+|||+.+..+.++..++..+..+
T Consensus       228 ~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  294 (356)
T TIGR00901       228 ATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555569999999999887655 678899999999999999999998888887776665444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.37  E-value=5.9e-06  Score=65.85  Aligned_cols=80  Identities=15%  Similarity=0.025  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHH-HHHHHHHHHHHHH
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAH-VIALESNTEPVPV   85 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~-vl~~~~~~~sl~t   85 (117)
                      ..-++..++-.......+|..-+|-|.|.+|+|++......  .+.+|++|+++||+     |||| .+..+..+.++++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34456677777888888999999999999999999776665  59999999999999     8875 7888889998888


Q ss_pred             HHHHhccc
Q 039825           86 PRKAETQS   93 (117)
Q Consensus        86 ~l~a~a~s   93 (117)
                      .+++++++
T Consensus        83 ~~l~~~~~   90 (402)
T PRK11902         83 AAMAFCPP   90 (402)
T ss_pred             HHHHhcCc
Confidence            88888743

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.36  E-value=8.8e-06  Score=66.61  Aligned_cols=94  Identities=10%  Similarity=-0.078  Sum_probs=70.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHHHHHH
Q 039825            1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-RAHVIALESN   79 (117)
Q Consensus         1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-Rr~vl~~~~~   79 (117)
                      ||-+.|.-.+    +++.++-..+..+.++..-++-|.|..|.|.+.+...+...+++|++|+++||++ +||++.+..+
T Consensus         1 m~~~~rLs~~----~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l   76 (400)
T PF03825_consen    1 MKLKFRLSLM----YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSL   76 (400)
T ss_pred             CcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence            4555554333    3444444455555567777778999999999999999999999999999999986 5788888777


Q ss_pred             HHHHHHHHHHhccccchhh
Q 039825           80 TEPVPVPRKAETQSHRIPL   98 (117)
Q Consensus        80 ~~sl~t~l~a~a~s~~~~l   98 (117)
                      +-++......+.++++.++
T Consensus        77 ~~~~~~~~~~~~~~f~~~~   95 (400)
T PF03825_consen   77 LSALALLLLAFSSSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHHhccHHHHH
Confidence            7777777777778887533

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.34  E-value=1.1e-05  Score=64.45  Aligned_cols=78  Identities=12%  Similarity=-0.036  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      .+...+.......+...+|.+.++.|.+..+.|.+.+.+.++..++++.+|+++||+|||+.+..+..+..++..+..
T Consensus       211 ~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~  288 (393)
T PRK09705        211 GVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI  288 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            333333344444444456666677999999999999999999999999999999999999998888766666655443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2.5e-06  Score=72.03  Aligned_cols=95  Identities=8%  Similarity=-0.138  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPG-VYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~-~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      .++-.++..++..+.|+..++. .+-.+++|.+....|+|.+.++|..+|+++++++|+|.||++-.+.+....+.|++.
T Consensus        45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~  124 (495)
T KOG2533|consen   45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF  124 (495)
T ss_pred             HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence            4556678888999999996653 355577999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccchhhHh
Q 039825           85 VPRKAETQSHRIPLVA  100 (117)
Q Consensus        85 t~l~a~a~s~~~~l~~  100 (117)
                      +++++...|+..+.+.
T Consensus       125 ~~~~~~~~s~~~~ial  140 (495)
T KOG2533|consen  125 GFLTAAVHSFPGLIAL  140 (495)
T ss_pred             HHHHHHHhhhHHHHHH
Confidence            9998888898886653

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.32  E-value=1.8e-05  Score=62.79  Aligned_cols=64  Identities=6%  Similarity=-0.181  Sum_probs=52.5

Q ss_pred             HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      +...+|...++.|.++.+.+.+.+...++..++++++|+++||+|||+++..+.++-.++....
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3445677767789999999999999999999999999999999999999988876655544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.29  E-value=1.4e-05  Score=63.00  Aligned_cols=65  Identities=6%  Similarity=-0.123  Sum_probs=56.2

Q ss_pred             HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825           31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR   95 (117)
Q Consensus        31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~   95 (117)
                      .+++++|.++.+.|.+.+...++..+++++.|++.||+|||+++..+..+..++.....+.++.+
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA  293 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999888888877777654443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.29  E-value=8.4e-06  Score=67.41  Aligned_cols=91  Identities=10%  Similarity=-0.037  Sum_probs=70.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-----hHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-----RAHVIAL   76 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-----Rr~vl~~   76 (117)
                      ++++.++.++...++..++-..+...+.+.+++++|++++|+|...+...+.+.+ -|++|.++||++     ||+.+.+
T Consensus        22 ~~~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~  100 (468)
T TIGR00788        22 FHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVL  100 (468)
T ss_pred             CCcchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHH
Confidence            4667778888888899998844445667777888999999999999999999988 555999999998     8888888


Q ss_pred             HHHHHH-HHHHHHHhccc
Q 039825           77 ESNTEP-VPVPRKAETQS   93 (117)
Q Consensus        77 ~~~~~s-l~t~l~a~a~s   93 (117)
                      +.++.+ +.....+..++
T Consensus       101 ~~~l~~~~~~~~l~~~~~  118 (468)
T TIGR00788       101 SGLLGSAILYGLLPGKVS  118 (468)
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            887774 33333333344

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.28  E-value=2e-05  Score=63.62  Aligned_cols=52  Identities=10%  Similarity=-0.070  Sum_probs=44.0

Q ss_pred             HHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825           29 YKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus        29 lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      +|. +++++|.+..+.+.+.+...++..+++++.|+++||+|||+++..+..+
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~  318 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL  318 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            444 5677899999999999988888899999999999999999987765543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.28  E-value=1.7e-05  Score=63.94  Aligned_cols=56  Identities=18%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             HHHhHHHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825           23 SLLPGVYKEVG-AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES   78 (117)
Q Consensus        23 ~il~~~lp~i~-~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~   78 (117)
                      ..+....|.+- +..|++..|.+++...+.++..++.+++|+++||+|||+++..+.
T Consensus       255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~  311 (434)
T PRK15075        255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT  311 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34444466654 458999999999999999999999999999999999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.25  E-value=1.9e-05  Score=63.55  Aligned_cols=73  Identities=8%  Similarity=-0.043  Sum_probs=59.2

Q ss_pred             HHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .......+....|.+.++.|.+..+.++......+...++.++.|+++||+|||+++..+..+..++.++.+.
T Consensus       283 ~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        283 QFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             HHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            3333444555678888999999887887777888899999999999999999999999988888877766554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.25  E-value=1.6e-05  Score=64.88  Aligned_cols=78  Identities=13%  Similarity=-0.029  Sum_probs=64.0

Q ss_pred             HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .|..==|++.... ++.|.+..|++.+....+....+.+++.|.++||+|||+.-+..++++++.++..-. +|+..+++
T Consensus        49 aDWLQGpY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~  126 (354)
T PF05631_consen   49 ADWLQGPYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLL  126 (354)
T ss_pred             HHHhhcchhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHH
Confidence            3434445555444 679999999999999999999999999999999999999999999999999865444 67766544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.24  E-value=5.7e-06  Score=69.29  Aligned_cols=64  Identities=6%  Similarity=-0.169  Sum_probs=59.3

Q ss_pred             HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           33 GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        33 ~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      +.+++++..|-|++.+++++|+.+++.+.|+++||||-|+++..+.+++++.|+++-++.+...
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~  128 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF  128 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4579999999999999999999999999999999999999999999999999999888855543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.23  E-value=1.6e-05  Score=62.94  Aligned_cols=64  Identities=5%  Similarity=-0.143  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      ....|.+.+..|.++.+.|.+.+...++..+++++.|++.||+|+|+.+..+..+.+++.++..
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~  283 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF  283 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence            3445667777999999999999999999999999999999999999999888777776665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.23  E-value=2e-05  Score=61.03  Aligned_cols=62  Identities=8%  Similarity=-0.133  Sum_probs=52.2

Q ss_pred             HHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           29 YKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        29 lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .|. +++++|.++.+.|.+.+...++..+++++.|++.||+|||+.+..+..+..++..+..+
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            343 45689999999999999999999999999999999999999988887777766555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.22  E-value=1.4e-05  Score=61.78  Aligned_cols=64  Identities=6%  Similarity=-0.087  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      ..-..+++.+|.++.+.|.+.+...+...++.+++|+++||+|||+.+..+......+..+..+
T Consensus       247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  310 (366)
T TIGR00886       247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL  310 (366)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence            3334556678999999999999999999999999999999999998887776666555555443

>PRK09952 shikimate transporter; Provisional

Probab=98.21  E-value=3.7e-05  Score=62.43  Aligned_cols=58  Identities=12%  Similarity=-0.022  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825           26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus        26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      +...+.+++++|.+..+...+.........++.+++|+++||+|||+++..+.++-.+
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~  328 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL  328 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3444456788999988777777677778889999999999999999988877654433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.21  E-value=2.3e-05  Score=61.89  Aligned_cols=61  Identities=7%  Similarity=-0.169  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l   87 (117)
                      ..+|...++.|.+..+.|.+.+...++..+++.+.|+++||+|||+++..+..+..++..+
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  281 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA  281 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            3467777778999999999999999999999999999999999999998777776665443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.21  E-value=2.5e-05  Score=55.73  Aligned_cols=83  Identities=16%  Similarity=-0.022  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCCh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYKEVGAALHTDP--IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~--~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      .....++...+........+.+.++.+.+.  .+.++..+.+.+...++++++|+++||+|||+.+..+.....++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   86 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL   86 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            444555566888888889999999998777  589999999999999999999999999999999998887766667777


Q ss_pred             Hhccc
Q 039825           89 AETQS   93 (117)
Q Consensus        89 a~a~s   93 (117)
                      ++..+
T Consensus        87 ~~~~~   91 (338)
T COG0477          87 ALAPN   91 (338)
T ss_pred             HhCcc
Confidence            77766

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.21  E-value=2.9e-05  Score=60.92  Aligned_cols=57  Identities=5%  Similarity=-0.141  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           43 LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        43 ~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      .|.+.++..++..++.+.+|+++||+|||+++..+.....+..+..++.++.+...+
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            466667778888899999999999999999999998888877777777666655433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.4e-05  Score=66.32  Aligned_cols=85  Identities=8%  Similarity=-0.004  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP   86 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~   86 (117)
                      .+.+++-|+...-...-++..+|.+ +++|++++.+.|...+.+.+..++.-|.+|+|+||+|.+|++......-.+++.
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            3777788877777666666666655 777999999999999999999999999999999999999999998888888888


Q ss_pred             HHHhcc
Q 039825           87 RKAETQ   92 (117)
Q Consensus        87 l~a~a~   92 (117)
                      +.++.+
T Consensus       300 ~l~~~~  305 (417)
T COG2223         300 LLSLFL  305 (417)
T ss_pred             HHHccc
Confidence            877764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.19  E-value=2.9e-05  Score=68.42  Aligned_cols=54  Identities=9%  Similarity=-0.018  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825           45 SLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL   98 (117)
Q Consensus        45 ~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l   98 (117)
                      ...++..++..+++++.|+++||+|||++++++.+++++++++.+++++...++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll  652 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI  652 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            345567789999999999999999999999999999999999999887755543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.18  E-value=3e-05  Score=59.00  Aligned_cols=65  Identities=9%  Similarity=-0.042  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH   72 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~   72 (117)
                      +....+..++...-...+....|. +++++|.+..+.|.+.+...++..++++++|+++||+|||+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344445555555555555555554 45678999999999999999999999999999999999996

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.17  E-value=3.5e-05  Score=59.99  Aligned_cols=50  Identities=2%  Similarity=-0.116  Sum_probs=44.8

Q ss_pred             HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825           31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus        31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      ...++.|.++.+.|.+.+...++..+++++.|++.||+|||+++..+..+
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999988876654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.17  E-value=2.7e-05  Score=62.59  Aligned_cols=63  Identities=10%  Similarity=-0.038  Sum_probs=53.9

Q ss_pred             HHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           27 GVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        27 ~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      ..+|.. ++.+|.++.|.|++.....++..+++++.|++.||+|||+++..+..+.+++.....
T Consensus       276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            344544 556899999999999999999999999999999999999999988888777776655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.17  E-value=4e-05  Score=60.83  Aligned_cols=62  Identities=8%  Similarity=-0.190  Sum_probs=50.9

Q ss_pred             HHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           29 YKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        29 lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .|.+ ++++|+++.+.|+.......+..++.++.|+++||+|+|+.+..+..+..++..+.++
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 6779999999999988888899999999999999999999988887766665555544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.17  E-value=1.3e-06  Score=57.58  Aligned_cols=52  Identities=13%  Similarity=-0.003  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825           47 TLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL   98 (117)
Q Consensus        47 ~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l   98 (117)
                      .+.+.++..++++++|++.||+|||+.+..+..+..++...++++.|++...
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLI   55 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3456788899999999999999999999999999998888888877766543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=3.1e-06  Score=70.52  Aligned_cols=67  Identities=15%  Similarity=0.004  Sum_probs=62.0

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      ++.+-+++|.|++...+++.|.+.+|+.|.+.||+|+|-.+..|+.+....|++.+|..+|...+++
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vA  165 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVA  165 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999865554

>PRK10504 putative transporter; Provisional

Probab=98.15  E-value=5.1e-05  Score=61.31  Aligned_cols=80  Identities=8%  Similarity=-0.048  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           12 NLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .++.++...-........|..-+ .+|.++.+.|++.....++..++.+++|++.||+|||+++..+....++...+..+
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence            33344444444556666776655 58999999999999999999999999999999999999999888888877666655


Q ss_pred             c
Q 039825           91 T   91 (117)
Q Consensus        91 a   91 (117)
                      .
T Consensus       347 ~  347 (471)
T PRK10504        347 V  347 (471)
T ss_pred             c
Confidence            3

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.15  E-value=4.5e-05  Score=60.79  Aligned_cols=58  Identities=7%  Similarity=-0.176  Sum_probs=46.6

Q ss_pred             HHHHHHHHhCCChhhhHHHHHHH-HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825           28 VYKEVGAALHTDPIGLDSLTLFR-SIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus        28 ~lp~i~~~~~ls~~q~G~l~s~~-~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      ..+.+.+++|+++.+.|++.+.. ..+..++.+++|++.||+|||+.+..+.....+..
T Consensus       232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~  290 (402)
T PRK11902        232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN  290 (402)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34557788999999999998654 45688999999999999999998877666655543

>PRK10133 L-fucose transporter; Provisional

Probab=98.14  E-value=5.8e-05  Score=61.72  Aligned_cols=70  Identities=6%  Similarity=-0.202  Sum_probs=55.4

Q ss_pred             HHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825           24 LLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        24 il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s   93 (117)
                      ......+.+ ++++|.++.+.|.....+.+++.++.++.|++.||+|||+++..+..+-.+...+..+.++
T Consensus       277 ~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~  347 (438)
T PRK10133        277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG  347 (438)
T ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            334444454 4578999999999999999999999999999999999999998887776655555544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.12  E-value=2.2e-05  Score=69.81  Aligned_cols=73  Identities=14%  Similarity=-0.053  Sum_probs=59.7

Q ss_pred             HhHHHHHHHHHhCCChh-hhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           25 LPGVYKEVGAALHTDPI-GLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        25 l~~~lp~i~~~~~ls~~-q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      .....+.+++++|++.. +.|++.+...++..++++++|+++||+++++++.++.++.+++.++.+++.+....
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASV  325 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            33444455777999999 99999999999999999999999999999999888888777777777766665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.09  E-value=5.5e-05  Score=62.31  Aligned_cols=43  Identities=9%  Similarity=-0.035  Sum_probs=38.5

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA   71 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr   71 (117)
                      -+.+.+++|.+..+.+.+.+.+.++..++.+++|+++||+|||
T Consensus       276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            3445677899999999999999999999999999999999976

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.08  E-value=2.4e-05  Score=63.05  Aligned_cols=94  Identities=11%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP   86 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~   86 (117)
                      -+..+.+..++..+...+.....+...++.--++.+.+.+..+..++..++.|++++++||+|+|+++..+..++.++.+
T Consensus       226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL  305 (428)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence            34456666777777778777777777666433446788888899999999999999999999999999999999999999


Q ss_pred             HHHhcc--ccchhhHh
Q 039825           87 RKAETQ--SHRIPLVA  100 (117)
Q Consensus        87 l~a~a~--s~~~~l~~  100 (117)
                      ...+.+  |.+..++.
T Consensus       306 ~~~~~~~~~~~~~~i~  321 (428)
T PF13347_consen  306 LLFFLGPGSPWLVLIL  321 (428)
T ss_pred             HHHHHHhhhHHHHHHH
Confidence            888876  66554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.07  E-value=6.4e-05  Score=62.40  Aligned_cols=66  Identities=6%  Similarity=-0.088  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHHHHHHHHHhCCChhhhHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825           18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTL-FRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus        18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s-~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ...+........|.+.++.|.+..+.|.+.. ...++..++.+++|+++||+|||+.+..+..+..+
T Consensus       235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l  301 (491)
T PRK11010        235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV  301 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3344444455566667789999999999984 66789999999999999999999887765544343

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.07  E-value=6.3e-05  Score=62.07  Aligned_cols=62  Identities=13%  Similarity=0.013  Sum_probs=54.0

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      -..+++..|.++.|.|.......++..+++++.|++.||+|||+++..+..+..++..+.++
T Consensus       283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~  344 (495)
T PRK14995        283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAM  344 (495)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            34567778999999999999999999999999999999999999999888888777655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.06  E-value=5.4e-05  Score=60.38  Aligned_cols=72  Identities=7%  Similarity=-0.033  Sum_probs=59.7

Q ss_pred             HhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           25 LPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        25 l~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      +...+|...++ +|.+..+.|++.+...++..+++++.|++.||.++++.+..+....+++..+.+++++...
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL  314 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence            34456666666 9999999999999999999999999999999988888888888788877777777776544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.06  E-value=3.6e-05  Score=60.88  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHH--HHHHHHHHHHHHHH-HHHhhhhchHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLT--LFRSIVQSSCYPLA-AYLFVHHNRAHVIALES   78 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~--s~~~l~~~l~~p~~-G~LaDR~GRr~vl~~~~   78 (117)
                      +..+...++.+++-..+..+.+|...||.|.+.+|+|.+.  +.......+.+|++ ++..||+||||..+..+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            5667778888999989999999999999999999999984  56788888999999 55799999998865544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.05  E-value=3.2e-05  Score=62.71  Aligned_cols=81  Identities=6%  Similarity=-0.062  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCCh--------hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYKEVGAALHTDP--------IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~--------~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +.++.++...-.+......+...++.+.++        ++.|.+.+...++..++.++.|+++||+|||+++..+.++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            334444444333344444555566666443        667999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 039825           83 VPVPRKAET   91 (117)
Q Consensus        83 l~t~l~a~a   91 (117)
                      +.....+.+
T Consensus       293 v~~~l~~~~  301 (418)
T TIGR00889       293 LRFGFFAYG  301 (418)
T ss_pred             HHHHHHHHc
Confidence            887666663

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.05  E-value=8.2e-05  Score=58.94  Aligned_cols=62  Identities=5%  Similarity=0.000  Sum_probs=53.1

Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825           37 HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL   98 (117)
Q Consensus        37 ~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l   98 (117)
                      +.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+.++++|.+..+
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~  311 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVV  311 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence            55667789999999999999999999999999999999999999888877777777766543

>PRK09669 putative symporter YagG; Provisional

Probab=98.05  E-value=1.5e-05  Score=64.49  Aligned_cols=74  Identities=9%  Similarity=-0.052  Sum_probs=57.8

Q ss_pred             HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHH-HHHHHHHHHHHHHHHHhccc
Q 039825           20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHV-IALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~v-l~~~~~~~sl~t~l~a~a~s   93 (117)
                      ....+-.++.....+++|+++++.|.+.++..+..++..|+.|+++||    +||||. +..+....++...++-..++
T Consensus        24 ~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~  102 (444)
T PRK09669         24 VWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPD  102 (444)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCC
Confidence            334445567888899999999999999999999999999999999999    777544 44566666666655544443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.04  E-value=5.9e-05  Score=60.43  Aligned_cols=65  Identities=17%  Similarity=-0.103  Sum_probs=51.9

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825           30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR   95 (117)
Q Consensus        30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~   95 (117)
                      +.+++.+|.++.+.|.+.+...++..++++..|++.||+++|+++..+. +.++...+.++.++++
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~  294 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLL  294 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHH
Confidence            4567779999999999999999999999999999999999999888775 3344444445544443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.03  E-value=0.00018  Score=56.46  Aligned_cols=84  Identities=13%  Similarity=-0.052  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHH-HHHHHHhHHHHHHHH--HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMER-ADVSLLPGVYKEVGA--ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         8 l~ll~l~~~~d~-~D~~il~~~lp~i~~--~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      +.+..++.++-. .+..+-......+++  .+|+++.+.+...+.+..++.++....+++.||+|+|+++..+..+-.+.
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333444444433 466666666666654  37999999999999999999999999999999999999988777665555


Q ss_pred             HHHHHhc
Q 039825           85 VPRKAET   91 (117)
Q Consensus        85 t~l~a~a   91 (117)
                      ..+....
T Consensus       222 ~~l~~~~  228 (310)
T TIGR01272       222 SIGAALT  228 (310)
T ss_pred             HHHHHHc
Confidence            5444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.03  E-value=0.00011  Score=57.90  Aligned_cols=68  Identities=13%  Similarity=-0.089  Sum_probs=52.9

Q ss_pred             HHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           28 VYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        28 ~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      ..+...++.|++  +.+...+.+.++..++.++.|++.||+|||+.+..+....+++..+.++++|.+..
T Consensus       238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (399)
T PRK05122        238 FITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMA  305 (399)
T ss_pred             HHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344444556663  45677778889999999999999999999999998888888887777777665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.03  E-value=5.7e-05  Score=64.05  Aligned_cols=77  Identities=17%  Similarity=0.032  Sum_probs=68.0

Q ss_pred             hHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHhhc
Q 039825           26 PGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALF  102 (117)
Q Consensus        26 ~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~  102 (117)
                      ..++|.+ ++++|.+..++|++.+++.+|..+++.+.+++.+|+++++++..+.++++++.+..+++++.+..++.++
T Consensus       238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~  315 (524)
T PF05977_consen  238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF  315 (524)
T ss_pred             HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3456666 4568999999999999999999999999999999999999999999999999999999999887665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12382 putative transporter; Provisional

Probab=97.99  E-value=9.4e-05  Score=58.32  Aligned_cols=71  Identities=7%  Similarity=-0.207  Sum_probs=54.4

Q ss_pred             HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      +....+..-++.|++.  .+...+.+.++..++++++|++.||+|||+.+..+..+..++..+.++++|....
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVA  305 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHH
Confidence            3333444555667654  5666677888889999999999999999999999988888888888777766543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.94  E-value=0.0002  Score=60.14  Aligned_cols=85  Identities=11%  Similarity=-0.096  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH--HHHHHHHHHHH
Q 039825            6 LTMALVNLAGI-MERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA--HVIALESNTEP   82 (117)
Q Consensus         6 ~~l~ll~l~~~-~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr--~vl~~~~~~~s   82 (117)
                      +-+....++++ .++.-.+++......-++++|++.+|+..+.....+...+|+.++|++.||+|-|  +++..++.+|.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            33344444544 3554555667777777889999999999999999999999999999999999999  99999999997


Q ss_pred             HHHHHHHh
Q 039825           83 VPVPRKAE   90 (117)
Q Consensus        83 l~t~l~a~   90 (117)
                      +..+...+
T Consensus       361 ~i~~~g~~  368 (477)
T PF11700_consen  361 IIPLYGLF  368 (477)
T ss_pred             HHHHHHHH
Confidence            66555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=97.94  E-value=4.6e-05  Score=61.66  Aligned_cols=70  Identities=4%  Similarity=-0.049  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh----chHHHH-HHHHH
Q 039825           10 LVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH----NRAHVI-ALESN   79 (117)
Q Consensus        10 ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~----GRr~vl-~~~~~   79 (117)
                      .-+++.+.+.+-.. ..+++...+.+.+|++..+.|.+.+...+..++..|++|+++||.    ||||.. ..+..
T Consensus        12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848         12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            33445545554444 345667788999999999999999999999999999999999996    777755 33433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.92  E-value=0.00011  Score=61.61  Aligned_cols=77  Identities=6%  Similarity=0.045  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      .+++++-+++.+--...++..+|.+.++ ..+..+.........+...+..|++|+++||+|+|+++..+...-.+.+
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3556666666665555566666666554 2233333333445678889999999999999999999987776555544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00013  Score=60.31  Aligned_cols=95  Identities=8%  Similarity=-0.091  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      |+++........+...--...++++-|.+++..|.+.++.+++...|.++..+|+.+.|+++|| +.|+.+.....+..+
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~  288 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL  288 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence            3344333333333344444688899999999999999999999999999999999999999999 888888888777666


Q ss_pred             HHHHHHhc-cccchhhH
Q 039825           84 PVPRKAET-QSHRIPLV   99 (117)
Q Consensus        84 ~t~l~a~a-~s~~~~l~   99 (117)
                      ..+...+. ++....++
T Consensus       289 ~~l~l~~~~~~~~~~~~  305 (394)
T COG2814         289 ALLALTFTGASPALALA  305 (394)
T ss_pred             HHHHHHHhcchHHHHHH
Confidence            66665554 33333333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.91  E-value=0.00028  Score=56.51  Aligned_cols=57  Identities=12%  Similarity=-0.020  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825           26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus        26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ....|.+.++.|++..+.|.+.+.+.++..+++.+.|++.||.+|+ .+..+..+..+
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~  293 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHH
Confidence            3445777788999999999999999999999999999999996554 43333344333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.90  E-value=8.6e-05  Score=59.02  Aligned_cols=80  Identities=14%  Similarity=-0.069  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      +.+..++...-........+...+ .++ +..+.+.+.+...++..++++++|+++||+|||+++..+..+..++.....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  305 (437)
T TIGR00792       227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF  305 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            333444444333333333444433 344 566788888888999999999999999999999999998887777766665


Q ss_pred             hc
Q 039825           90 ET   91 (117)
Q Consensus        90 ~a   91 (117)
                      +.
T Consensus       306 ~~  307 (437)
T TIGR00792       306 FA  307 (437)
T ss_pred             Hc
Confidence            54

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.89  E-value=8e-05  Score=62.24  Aligned_cols=88  Identities=14%  Similarity=0.011  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++.....+++-..+.|+.+ +++....-.-+.++|++.+|+.++....++..++|+.++|+|.||+|-|+++..++++++
T Consensus       251 ~~~i~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             ccchHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence            3333444444444444433 445544445566999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 039825           83 VPVPRKAET   91 (117)
Q Consensus        83 l~t~l~a~a   91 (117)
                      +.++..-+.
T Consensus       330 ~~~~~~~~~  338 (438)
T COG2270         330 IAALYLIFL  338 (438)
T ss_pred             HHHHHHHHc
Confidence            987664443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.89  E-value=0.00011  Score=60.59  Aligned_cols=64  Identities=11%  Similarity=-0.081  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhCCChhhhHH------------HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           27 GVYKEVGAALHTDPIGLDS------------LTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~------------l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .-.|.+.++.|.+..+.+.            ...+..++..++..++|+++||+|||+++..+..+-+++..+.++
T Consensus       309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            3367777788887653321            123344566668889999999999999998877766665544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.84  E-value=0.00025  Score=56.06  Aligned_cols=60  Identities=12%  Similarity=-0.142  Sum_probs=46.4

Q ss_pred             HHHHHhHHHHHHHHHhCCChhhhHHHHHHHH-HHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825           21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRS-IVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus        21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~-l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +....+. .+...+|.|+++.+.|.+..... ....++..+.|++.||+|+|+++..+..+.
T Consensus       224 ~~~~~~~-~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       224 AVSGFGL-SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHH-hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4444444 44555668999999999988775 466677899999999999999998776654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.83  E-value=0.00014  Score=60.33  Aligned_cols=76  Identities=5%  Similarity=-0.161  Sum_probs=56.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE   77 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~   77 (117)
                      +++++-.+.+++-+++-++-.++.- ..-.-++++-|+|.+|.|.+.++..+...+.+|+.|.++||.|.||-++..
T Consensus         3 ~~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen    3 YFKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             CCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            4566666777777777676666544 444455667999999999999999999999999999999999977655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.82  E-value=0.00025  Score=58.06  Aligned_cols=87  Identities=6%  Similarity=-0.201  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHH--HHHHHHHHHHHH
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIA--LESNTEPVPVPR   87 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~--~~~~~~sl~t~l   87 (117)
                      .++.++..+-.......+|...++.|.+..+.|.+.+...++..++++++|+++||.  ++|+...  .+....++..++
T Consensus       247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            333444443333334455666678999999999999999999999999999999983  3443333  334444555556


Q ss_pred             HHhccccchhh
Q 039825           88 KAETQSHRIPL   98 (117)
Q Consensus        88 ~a~a~s~~~~l   98 (117)
                      +++++|++.+.
T Consensus       327 ~~~~~~~~~~~  337 (455)
T TIGR00892       327 CALAGDYTGLV  337 (455)
T ss_pred             HHHhchHHHHH
Confidence            66667766543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.81  E-value=0.00018  Score=59.31  Aligned_cols=69  Identities=12%  Similarity=0.001  Sum_probs=63.5

Q ss_pred             HHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           22 VSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        22 ~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .+.+++++++|++|.|+|.++.|++++...++.++.+|+..+++.|+|-.+.+.+++++-.+++..=..
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~   96 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL   96 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            457889999999999999999999999999999999999999999999999999999888888766544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.80  E-value=0.00051  Score=55.84  Aligned_cols=65  Identities=5%  Similarity=-0.144  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAH   72 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~   72 (117)
                      ++...+..++-+.-...+...+|.. +++.|.+..+.+.+.+.+.++..++.++.|+++||+  |||+
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            4444444444443333444455665 555899999999999999999999999999999999  5554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.76  E-value=0.00044  Score=55.70  Aligned_cols=65  Identities=9%  Similarity=-0.090  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHh--CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAAL--HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV   73 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~--~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v   73 (117)
                      +...+.+++...-...+..-+|.+-++.  +.+..+.|.+.+...++..++.+.+|+++||+|||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            4445555555544455555677777775  6678899999999999999999999999999997764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.75  E-value=0.00056  Score=55.30  Aligned_cols=61  Identities=8%  Similarity=-0.076  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH   68 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~   68 (117)
                      ++.+.++.++.+.-...+...+|.+ +++.|++..+.+...+.+.++..++.+++|+++||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            4445555555555444444445555 477899999999999999999999999999999999

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.75  E-value=0.00015  Score=59.57  Aligned_cols=79  Identities=8%  Similarity=-0.060  Sum_probs=58.7

Q ss_pred             HHHHHHHHH-HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchH-HHHHHHHHHHHHHH
Q 039825           12 NLAGIMERA-DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRA-HVIALESNTEPVPV   85 (117)
Q Consensus        12 ~l~~~~d~~-D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr-~vl~~~~~~~sl~t   85 (117)
                      ++|.+-+.+ ...+.+++.....+..|+++++.|.+.++.-+.-++..|++|+++|    |+||| +-+..+....+++.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            344333333 3344556777788889999999999999999999999999999999    66995 45555666667766


Q ss_pred             HHHHh
Q 039825           86 PRKAE   90 (117)
Q Consensus        86 ~l~a~   90 (117)
                      .++-.
T Consensus        92 ~llf~   96 (473)
T PRK10429         92 FLLFS   96 (473)
T ss_pred             HHHHc
Confidence            55533

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.75  E-value=0.00024  Score=53.88  Aligned_cols=69  Identities=14%  Similarity=-0.112  Sum_probs=55.7

Q ss_pred             HHHhHHHHHH-HHHhCCC-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825           23 SLLPGVYKEV-GAALHTD-PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        23 ~il~~~lp~i-~~~~~ls-~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      .......|.. ++++|.+ ..+.|.+.+...++..+++++.|+++||+|+|+..........+......+.
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL  293 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665 8999999 8999999999999999999999999999999877777766666665554443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=97.72  E-value=0.00085  Score=53.03  Aligned_cols=58  Identities=5%  Similarity=-0.165  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      ...|.+.++.|.++.+.|+......++..+++...+++.||+|+|+.+.......++.
T Consensus       224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~  281 (401)
T PRK11043        224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS  281 (401)
T ss_pred             HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            3466677789999999999888888999999999999999999998765554444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.71  E-value=0.00025  Score=63.68  Aligned_cols=84  Identities=11%  Similarity=-0.190  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV   85 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t   85 (117)
                      .++.+.++.++..+-...+...+|. +++.+|.++.+.|++.+++.++..+++++.|+++||+++++.+..+.++.+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  305 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFG  305 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHH
Confidence            3444444444444333333334444 456689999999999999999999999999999999888877776666666665


Q ss_pred             HHHHh
Q 039825           86 PRKAE   90 (117)
Q Consensus        86 ~l~a~   90 (117)
                      +..++
T Consensus       306 ~~l~~  310 (1140)
T PRK06814        306 LDLAF  310 (1140)
T ss_pred             HHHHh
Confidence            54544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.69  E-value=2.3e-05  Score=67.39  Aligned_cols=88  Identities=14%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH-HHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIAL-ESNTEPVPV   85 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~-~~~~~sl~t   85 (117)
                      .++.+=+-+++-+.-...+-+.++..-+.+|++++|+|.+....-+..+++.|+||+++|||-+||.+.+ +++.+..++
T Consensus        12 ~l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~   91 (618)
T KOG3762|consen   12 ALIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT   91 (618)
T ss_pred             hhheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            3444444444444455567778888999999999999999999999999999999999999998866554 555688888


Q ss_pred             HHHHhcccc
Q 039825           86 PRKAETQSH   94 (117)
Q Consensus        86 ~l~a~a~s~   94 (117)
                      ++..|++.-
T Consensus        92 fll~fv~P~  100 (618)
T KOG3762|consen   92 FLLVFVPPV  100 (618)
T ss_pred             HheeeccCc
Confidence            777765433

>PRK09848 glucuronide transporter; Provisional

Probab=97.61  E-value=0.00045  Score=55.89  Aligned_cols=82  Identities=4%  Similarity=-0.112  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA   89 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a   89 (117)
                      ..+..++...-........|.. ++.+|.++.+.++......++..++++++|+++||+|+|+++..+..+..++.+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~  312 (448)
T PRK09848        233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF  312 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444443 445777665555555555677888999999999999999999999988888777766


Q ss_pred             hcc
Q 039825           90 ETQ   92 (117)
Q Consensus        90 ~a~   92 (117)
                      +.+
T Consensus       313 ~~~  315 (448)
T PRK09848        313 WVS  315 (448)
T ss_pred             HcC
Confidence            643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.59  E-value=0.00039  Score=57.04  Aligned_cols=76  Identities=9%  Similarity=-0.115  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      +..++...-..+.....+...+...-+..+.+.+.+...++..++.+++|+++||+|+|+.+..+..++.++.+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444555555444456667777777778999999999999999999999988877666555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.57  E-value=1.6e-05  Score=67.57  Aligned_cols=88  Identities=8%  Similarity=-0.015  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP   86 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~   86 (117)
                      .+..+++..++..+-...+..++..|++.|+++.+|.|++.+.+-++..+..++..|+++|.+|.|.+..|.++.+++++
T Consensus         4 fl~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen    4 FLVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            34555666666777777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccc
Q 039825           87 RKAETQSHR   95 (117)
Q Consensus        87 l~a~a~s~~   95 (117)
                      ++++ +.+.
T Consensus        84 l~~l-Phf~   91 (539)
T PF03137_consen   84 LFAL-PHFL   91 (539)
T ss_dssp             ---------
T ss_pred             HHhc-cHhh
Confidence            9988 5443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.51  E-value=0.0013  Score=50.18  Aligned_cols=62  Identities=6%  Similarity=-0.178  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039825            8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN   69 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G   69 (117)
                      ++.+.+..++...-...+....|. +++++|.++.+.|.+.+.+.++..++.++.|+++||++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            344455555555444444444444 56678999999999999999999999999999999863

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.50  E-value=0.00074  Score=52.60  Aligned_cols=84  Identities=12%  Similarity=-0.020  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ||..+..........+ -....+.--|.+|+.+|.|++|+..+.++..++..+ +++.|.+.||+|-+.++.+|...-.+
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            5655444443333332 344667778999999999999999999999999986 58999999999999999888766555


Q ss_pred             HHHHHH
Q 039825           84 PVPRKA   89 (117)
Q Consensus        84 ~t~l~a   89 (117)
                      +-....
T Consensus        79 GY~~~~   84 (250)
T PF06813_consen   79 GYGLLW   84 (250)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.50  E-value=0.0028  Score=51.37  Aligned_cols=65  Identities=14%  Similarity=0.033  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA   71 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr   71 (117)
                      .++.+.+.++..+.-...+..-+|.. ++++|.+..+.|++.+...++..+++++.|+++||+++|
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34555566665555555555556655 667899999999999999999999999999999998755

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.0012  Score=55.84  Aligned_cols=94  Identities=7%  Similarity=-0.097  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN--RAHVIALESNTEPV   83 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~sl   83 (117)
                      +.++.+.++..+..+-..+-...+|+..++.+.+..|...+.++...+-.++-++.|+++|+..  ++.+..+++++-++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4567778888888888888888999999999999999999999999999999999999999999  66788888888999


Q ss_pred             HHHHHHhccccchhhH
Q 039825           84 PVPRKAETQSHRIPLV   99 (117)
Q Consensus        84 ~t~l~a~a~s~~~~l~   99 (117)
                      +.+.+.++++++.+.+
T Consensus       378 ~~~~~p~~~~~~~l~~  393 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIV  393 (509)
T ss_pred             HHHHHHHhccHHHHHH
Confidence            9999999999966443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.0012  Score=56.05  Aligned_cols=80  Identities=8%  Similarity=-0.058  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHH--------HHhC--CChhhh----HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825           12 NLAGIMERADVSLLPGVYKEVG--------AALH--TDPIGL----DSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE   77 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~--------~~~~--ls~~q~----G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~   77 (117)
                      .++.+=.++....++...+.++        +.+|  +++.++    +.+++++.+|..+|+...|.++||+|||..+.++
T Consensus        17 ~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~   96 (485)
T KOG0569|consen   17 TLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLS   96 (485)
T ss_pred             HHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            3444444455555555444333        3345  555544    4556789999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhc
Q 039825           78 SNTEPVPVPRKAET   91 (117)
Q Consensus        78 ~~~~sl~t~l~a~a   91 (117)
                      .++.-++..+.+++
T Consensus        97 ~~l~~~~~~~~~~s  110 (485)
T KOG0569|consen   97 NLLAVLAALLMGLS  110 (485)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887777665554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.41  E-value=0.0019  Score=52.17  Aligned_cols=45  Identities=4%  Similarity=-0.167  Sum_probs=37.6

Q ss_pred             HHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825           27 GVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA   71 (117)
Q Consensus        27 ~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr   71 (117)
                      ..+|.. +++.|.++.+.|+..+.+.++..++.+++|+++||+|++
T Consensus       272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            344554 455799999999999999999999999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10054 putative transporter; Provisional

Probab=97.41  E-value=0.0008  Score=53.92  Aligned_cols=62  Identities=6%  Similarity=-0.175  Sum_probs=50.1

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc-cccc
Q 039825           34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET-QSHR   95 (117)
Q Consensus        34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a-~s~~   95 (117)
                      ++.+.+....|.+.+.........+++.|++.||+|+|+.+..+..+..++....+++ ++.+
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLL  299 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHH
Confidence            4567777788888888888888889999999999999999998888877777666654 3444

>TIGR00898 2A0119 cation transport protein

Probab=97.39  E-value=0.0015  Score=53.20  Aligned_cols=49  Identities=10%  Similarity=-0.035  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825           46 LTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        46 l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~   94 (117)
                      ......+...++.++.|+++||+|||+++..+.++.+++.++..+.++.
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~  408 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD  408 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3345567778889999999999999999999999988888887776554

>PRK11462 putative transporter; Provisional

Probab=97.37  E-value=0.0038  Score=51.43  Aligned_cols=70  Identities=11%  Similarity=-0.049  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825           14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus        14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      ..++...-..+........-+...-++...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV  305 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            3444444444444444444444333444556677788888899999999999999999987655444433

>PRK09669 putative symporter YagG; Provisional

Probab=97.29  E-value=0.0026  Score=51.48  Aligned_cols=73  Identities=10%  Similarity=-0.100  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825           14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP   86 (117)
Q Consensus        14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~   86 (117)
                      ..++...-.++.+.......+...-++...+.+.+...+...++.+++++++||+|+|+.+..+.....+...
T Consensus       237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  309 (444)
T PRK09669        237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA  309 (444)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            3333333334444444444443322333334455566788888999999999999999999888776665443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.24  E-value=0.0099  Score=48.23  Aligned_cols=78  Identities=4%  Similarity=-0.157  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825           17 MERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        17 ~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~   94 (117)
                      ....+..+.+.+.+..++. .+.+..+.+...+.+..+..++..+.|++.||+++|+++..+...-.+..++..++++.
T Consensus       244 yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~  322 (410)
T TIGR00885       244 YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH  322 (410)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            3444445555545554432 24455555656677778889999999999999999999988877777777777776553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0075  Score=51.40  Aligned_cols=85  Identities=12%  Similarity=-0.044  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHhHHHHHHHHHhC----CChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVS-LLPGVYKEVGAALH----TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTE   81 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~----ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~   81 (117)
                      +.++...=+-|++... +=..+.-++.++++    .++++..-+.++|..---+...++||++||+ |+|+.+..|.++.
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3444444444444433 22234555666666    9999998888877666668999999999995 9999999999999


Q ss_pred             HHHHHHHHhcc
Q 039825           82 PVPVPRKAETQ   92 (117)
Q Consensus        82 sl~t~l~a~a~   92 (117)
                      .++.++.+.+.
T Consensus       103 ~iGh~~L~~~~  113 (498)
T COG3104         103 AIGHLVLAISS  113 (498)
T ss_pred             HHHHHHHhccc
Confidence            99999988874

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.0075  Score=50.73  Aligned_cols=73  Identities=14%  Similarity=-0.014  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGV-YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIAL   76 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~-lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~~   76 (117)
                      +++.++++++++++-|+-|..+.-= --.+.|+-|.|..+.++..+.|-++...|++++||++||.  |||.+..+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~  325 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL  325 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence            3567899999999999999976643 3456778899999999999999999999999999999997  56655443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.0051  Score=52.21  Aligned_cols=88  Identities=8%  Similarity=-0.047  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .||.....+.+......-....+..--..+-++-|.++.+.-++.........+.+..+.++.||+|||+.++.+..+-.
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA  346 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            35554444444333333333345555667788889999999999999999999999999999999999999998877665


Q ss_pred             HHHHHHHh
Q 039825           83 VPVPRKAE   90 (117)
Q Consensus        83 l~t~l~a~   90 (117)
                      ++..+...
T Consensus       347 ~~~~~~~~  354 (485)
T KOG0569|consen  347 VALLLMSI  354 (485)
T ss_pred             HHHHHHHH
Confidence            55554433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.13  E-value=0.0003  Score=56.72  Aligned_cols=71  Identities=14%  Similarity=-0.027  Sum_probs=57.5

Q ss_pred             HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchHHHHH-HHHHHHHHHHHHHHhc
Q 039825           21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRAHVIA-LESNTEPVPVPRKAET   91 (117)
Q Consensus        21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr~vl~-~~~~~~sl~t~l~a~a   91 (117)
                      .......+.+...+.+|+++...|.+..+..+.-++..|+.|+++|    |+||||..+ .|....+++..++...
T Consensus        17 ~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~   92 (428)
T PF13347_consen   17 WSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP   92 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence            3334456778888889999999999999999999999999999999    899887665 5666666666666554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.00  E-value=0.014  Score=46.89  Aligned_cols=71  Identities=4%  Similarity=-0.111  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV-HHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD-R~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      ...|...+|.+.++.+.|++.+...++...++.+.+++.| |++.++.+..+..+.+++..+.+++++++..
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  300 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQL  300 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3456655665558889999988877766655555566665 5676777778888888888788887777543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.94  E-value=0.0013  Score=55.91  Aligned_cols=86  Identities=6%  Similarity=-0.060  Sum_probs=71.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch-HHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPG-VYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-AHVIALES   78 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~-~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-r~vl~~~~   78 (117)
                      +.+||.+++..+-.++.....+++.. .-|++++ |.+.+.+..|+++++..+++++++|.+|++.-|.+. |+.+..|.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            56899999999999999988886654 4566655 488889999999999999999999999999999996 67777777


Q ss_pred             HHHHHHHHH
Q 039825           79 NTEPVPVPR   87 (117)
Q Consensus        79 ~~~sl~t~l   87 (117)
                      ++-.++.++
T Consensus       110 ii~~~g~ll  118 (488)
T KOG2325|consen  110 LIAIIGNLL  118 (488)
T ss_pred             HHHHHHHHH
Confidence            666666544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.92  E-value=0.0058  Score=50.81  Aligned_cols=64  Identities=9%  Similarity=-0.031  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      .-.+.+-++-+.+... -....+......++..+.+++.||+|||+.++.+...+.++.++.+..
T Consensus       316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~  379 (513)
T KOG0254|consen  316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVV  379 (513)
T ss_pred             eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Confidence            3455666666666433 344445667777777788999999999999999999999998887764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.90  E-value=0.0083  Score=51.87  Aligned_cols=79  Identities=8%  Similarity=0.045  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHH-HHHHHHHHHHHHhhhhc--hHHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSI-VQSSCYPLAAYLFVHHN--RAHVIALESNTEP   82 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l-~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~s   82 (117)
                      .++...++.++...-...+...+| .+++.+|+++.+.|.+.....+ +..++.++.|+++||++  .|+++.+++.+..
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence            445555566666555554444444 5566799999999999987765 67899999999999999  4466666555544


Q ss_pred             HHH
Q 039825           83 VPV   85 (117)
Q Consensus        83 l~t   85 (117)
                      +..
T Consensus       411 ~~~  413 (633)
T TIGR00805       411 LSY  413 (633)
T ss_pred             HHH
Confidence            443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.01  Score=50.23  Aligned_cols=83  Identities=11%  Similarity=-0.103  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           10 LVNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        10 ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ...+.+++...-..+-+.+.....+ -.|.++.+.+........+..++.+++..+.+|+|+|+++..+.++|.++.++.
T Consensus       240 ~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~  319 (467)
T COG2211         240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL  319 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            3333555555555555555444433 356666777778888888888889999999999999999999999999999998


Q ss_pred             Hhcc
Q 039825           89 AETQ   92 (117)
Q Consensus        89 a~a~   92 (117)
                      -+.+
T Consensus       320 ~f~~  323 (467)
T COG2211         320 YFTP  323 (467)
T ss_pred             Hhhc
Confidence            8887

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.62  E-value=0.001  Score=58.93  Aligned_cols=87  Identities=11%  Similarity=0.023  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      .+..+.++++..+.+.+-...++.++..|++-|+++.+|.|++.+.+-++..+...+..|.+-|..|.+.+..|.++.++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            34567778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 039825           84 PVPRKAE   90 (117)
Q Consensus        84 ~t~l~a~   90 (117)
                      +++++++
T Consensus       175 gsll~al  181 (735)
T KOG3626|consen  175 GSLLFAL  181 (735)
T ss_pred             HHHHHhC
Confidence            9999887

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.60  E-value=0.046  Score=43.04  Aligned_cols=44  Identities=11%  Similarity=-0.084  Sum_probs=37.0

Q ss_pred             HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825           31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI   74 (117)
Q Consensus        31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl   74 (117)
                      .+++.+|.+..+.|++......+..+++++.|++.||+|++...
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  276 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ  276 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455899999999999999999999999999999999855433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.02  Score=46.99  Aligned_cols=70  Identities=3%  Similarity=-0.113  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE   77 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~   77 (117)
                      +++..++..+.+..+-...++..  -.++.||+|+.+.|-+.+.-..-.++.+|+.|.++||+||+-..+.+
T Consensus       267 w~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            44444555544444333333322  24788999999999999887788889999999999999999555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.39  E-value=0.029  Score=47.34  Aligned_cols=86  Identities=12%  Similarity=0.018  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChh----hhHH-------------HHHHHHHHHHHHHHHHHHHhhhhch
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPI----GLDS-------------LTLFRSIVQSSCYPLAAYLFVHHNR   70 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~----q~G~-------------l~s~~~l~~~l~~p~~G~LaDR~GR   70 (117)
                      ++.++.+..+.|+....+...+-....+++++..    |.-.             =..+..+.-.-|..+.|++.||+||
T Consensus       331 lw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGR  410 (528)
T KOG0253|consen  331 LWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGR  410 (528)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcc
Confidence            3445666666666666665555444444444332    2111             0123456667788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Q 039825           71 AHVIALESNTEPVPVPRKAETQS   93 (117)
Q Consensus        71 r~vl~~~~~~~sl~t~l~a~a~s   93 (117)
                      |+.++.+.+++++++++.-.+++
T Consensus       411 KkTMal~l~~f~iflfll~~c~~  433 (528)
T KOG0253|consen  411 KKTMALSLILFGIFLFLLTTCKT  433 (528)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999988665533

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.30  E-value=0.11  Score=41.71  Aligned_cols=60  Identities=10%  Similarity=-0.121  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA   71 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr   71 (117)
                      ++.+.+.+++...-...+..-+|.+-++.|.+.. .|...+...+...   +..|+++||..||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~  253 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARA  253 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhh
Confidence            3555555555555555555557777777787764 5555544444444   4457788877654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=96.25  E-value=0.026  Score=46.55  Aligned_cols=67  Identities=7%  Similarity=-0.118  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHH-HHHHHHHHHHHHHhcc
Q 039825           26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIAL-ESNTEPVPVPRKAETQ   92 (117)
Q Consensus        26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~-~~~~~sl~t~l~a~a~   92 (117)
                      ..+.....+..|++++..|.+..+.-+-=++.-|+.|+++||    +||||..++ +....++++.++-..+
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            356667788899999999999999999999999999999996    799876664 4455666665554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.22  E-value=0.033  Score=47.31  Aligned_cols=78  Identities=9%  Similarity=-0.155  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIALESNTEP   82 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~~~~~~s   82 (117)
                      ++..++.+++.......+..-+|-+-++ .|.|..|.+.+...+..+-.++.+++|+++||    +++|..+.....++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4677788888888888888888888888 67999999999999999999999999999999    889988888888877


Q ss_pred             HHH
Q 039825           83 VPV   85 (117)
Q Consensus        83 l~t   85 (117)
                      +..
T Consensus       355 ~~g  357 (495)
T KOG2533|consen  355 IIG  357 (495)
T ss_pred             HHH
Confidence            766

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.14  E-value=0.035  Score=47.13  Aligned_cols=89  Identities=8%  Similarity=0.003  Sum_probs=75.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      ++||.+++++++-.+.|.+-.--.+.+--....-++ +....-|+..+|.+.+...+..+=|+.||+|-|....++...=
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            478888888888888888777777777777777788 7777888889999999999999999999999999999999888


Q ss_pred             HHHHHHHHhc
Q 039825           82 PVPVPRKAET   91 (117)
Q Consensus        82 sl~t~l~a~a   91 (117)
                      .++..+-..+
T Consensus       120 ~iGa~Ir~is  129 (480)
T KOG2563|consen  120 GIGAWIRLIS  129 (480)
T ss_pred             HHHHHHhhhc
Confidence            8887765554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.58  E-value=0.23  Score=40.03  Aligned_cols=50  Identities=6%  Similarity=-0.180  Sum_probs=36.5

Q ss_pred             HHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825           24 LLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV   73 (117)
Q Consensus        24 il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v   73 (117)
                      ......|.+ ++.+|.+..+.|+.......+..+++.+.+++.+|.++++.
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            333445655 55579999999999888888888888999887755544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.40  E-value=0.11  Score=43.28  Aligned_cols=86  Identities=8%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825           12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      +...+-+.+|++ .+.-....=++-+.+..-.|.+.+..-+.=++.-.+..++.+|+|-|+.+.++..+.++=-.+++++
T Consensus       231 g~~~~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~  309 (412)
T PF01306_consen  231 GVAAIYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA  309 (412)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh
Confidence            344577889988 4433333333334455668999999999999999999999999999999999999999999999999


Q ss_pred             cccchhh
Q 039825           92 QSHRIPL   98 (117)
Q Consensus        92 ~s~~~~l   98 (117)
                      +|.+.+.
T Consensus       310 ~~~~~i~  316 (412)
T PF01306_consen  310 TNPWVIS  316 (412)
T ss_dssp             -SHHHHH
T ss_pred             cchHHHH
Confidence            8877643

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.32  E-value=0.096  Score=44.12  Aligned_cols=84  Identities=14%  Similarity=-0.001  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChh-hhHHHHHHH----HHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPI-GLDSLTLFR----SIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~-q~G~l~s~~----~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +.....+-.+-.++-........+.....++-... ..+......    .+...+.+|..|.++||+|||..+...+..-
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~  102 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT  102 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence            33334433343444334444555555555543322 233333333    5777899999999999999999999887766


Q ss_pred             HHHHHHHHh
Q 039825           82 PVPVPRKAE   90 (117)
Q Consensus        82 sl~t~l~a~   90 (117)
                      -+......+
T Consensus       103 ~l~~~~~~~  111 (463)
T KOG2816|consen  103 ILPALCLLF  111 (463)
T ss_pred             HHhHHHHHH
Confidence            666555555

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.04  E-value=0.42  Score=40.27  Aligned_cols=65  Identities=11%  Similarity=-0.074  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR   70 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR   70 (117)
                      ..++.+.++++.+..-..++-.-.|. +++-+|.+-.+-|++.+...+.+.+...++|+++||.-+
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667777777777777766555555 466699999999999999999999999999999999866

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.01  E-value=0.17  Score=44.31  Aligned_cols=67  Identities=9%  Similarity=-0.250  Sum_probs=57.5

Q ss_pred             HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhc
Q 039825           25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      ...+...+.+.+|++.++...+...+....-+...++|+++|+ +||++.+..+.+++.++..+.+++
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666777899999999999998888888999999999997 699999999999999988887774

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=94.57  E-value=0.66  Score=38.67  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=54.3

Q ss_pred             HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhcc
Q 039825           21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPVPVPRKAETQ   92 (117)
Q Consensus        21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl~t~l~a~a~   92 (117)
                      -.+++-.=+|.+-.|-|+|..|.|++.+...+.+...+...-.+++| -++|+..+...+..-++...+.+++
T Consensus       223 ~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P  295 (395)
T COG2807         223 LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP  295 (395)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            33455556999999999999999999999999999999999999995 4556555555554444444444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.57  E-value=0.049  Score=45.90  Aligned_cols=104  Identities=14%  Similarity=0.007  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHH-HHhhhhchHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAA-YLFVHHNRAHVIALESNT   80 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G-~LaDR~GRr~vl~~~~~~   80 (117)
                      +++..+.++..+.+....|..-.. ...-.++..|+|++.+.+.+.+.......+++.+.. .+.-.+|-|+++..|+..
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            345555556666666666653222 223466788999999999999988888888888887 999999999999999999


Q ss_pred             HHHHHHHHHhccccchhhHhhcCCCC
Q 039825           81 EPVPVPRKAETQSHRIPLVALFPEPL  106 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~~~l~~~~~~~~  106 (117)
                      -.+..+..+|+++.|.+......+++
T Consensus       318 ~~~~~~~~af~~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWMMFAAGVVVAL  343 (463)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHh
Confidence            99999999999999997777665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=94.56  E-value=0.34  Score=40.80  Aligned_cols=49  Identities=8%  Similarity=-0.103  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH-HHHHHHHHHHHHhc
Q 039825           43 LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE-SNTEPVPVPRKAET   91 (117)
Q Consensus        43 ~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~-~~~~sl~t~l~a~a   91 (117)
                      .+...++..+.+++..|+.|-++|+-|+||-+... ..+-++++.+..+.
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v  121 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV  121 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            46777899999999999999999999988666544 44455666666664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=94.18  E-value=0.14  Score=42.47  Aligned_cols=55  Identities=4%  Similarity=-0.142  Sum_probs=50.6

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      +.+|.++.+.|.+.....++..+++...+++.+|++.|+++.++.++..++....
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~  335 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD  335 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence            4689999999999999999999999999999999999999999999998877554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.94  E-value=0.041  Score=46.86  Aligned_cols=69  Identities=10%  Similarity=-0.096  Sum_probs=51.7

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHHHH-HHHHHHHHHHHhccccchh
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIALES-NTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~~~-~~~sl~t~l~a~a~s~~~~   97 (117)
                      +++..++.|++..-.+.+-...-+.-.+.||+.|..+||    |||||.++... +.-+++.++.+++.+....
T Consensus        55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~  128 (498)
T KOG0637|consen   55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLL  128 (498)
T ss_pred             ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHH
Confidence            556677788888877777776777777899999999995    89998776544 4466666778887665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.86  E-value=1  Score=37.74  Aligned_cols=83  Identities=11%  Similarity=0.019  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALH-TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~-ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      |+....+.++|++.....-+--+..+-...+.. =|---.+.......+...+.+|..|.+.||..|.+++-.++.+=-+
T Consensus         1 ~~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    1 KRALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNL   80 (432)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHH
Confidence            356677888898888877777777666666652 2333344445566888889999999999999999998888766444


Q ss_pred             HHHH
Q 039825           84 PVPR   87 (117)
Q Consensus        84 ~t~l   87 (117)
                      +.++
T Consensus        81 sv~~   84 (432)
T PF06963_consen   81 SVAA   84 (432)
T ss_pred             HHHH
Confidence            4333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.80  E-value=1  Score=38.18  Aligned_cols=85  Identities=7%  Similarity=-0.146  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCh-----hhhHHHHHHHHHHHHHH-HHHHHHHhhhhchHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDP-----IGLDSLTLFRSIVQSSC-YPLAAYLFVHHNRAHVIAL   76 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~-----~q~G~l~s~~~l~~~l~-~p~~G~LaDR~GRr~vl~~   76 (117)
                      ++++.++..++-.++-.+..    .++.++++++..+.     .++.++-+...+..++. .++.+++++|++|++++-.
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y----~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~   79 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNY----TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYT   79 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHH----HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHH
Confidence            45555555555544433222    35889999987743     46888888887877777 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 039825           77 ESNTEPVPVPRKAET   91 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a   91 (117)
                      ....|.+.-++.++.
T Consensus        80 ~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        80 VISPFLGFFALFAFV   94 (472)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888887777775

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=93.54  E-value=0.27  Score=41.75  Aligned_cols=82  Identities=7%  Similarity=-0.006  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHH-HHHHHHHHHH
Q 039825           12 NLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIA-LESNTEPVPV   85 (117)
Q Consensus        12 ~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~-~~~~~~sl~t   85 (117)
                      +++-+-..+...++. .++-...+.+|++++..|.+..+.-+-=++.-|+.|.+.||    +||+|..+ ++..-+++.+
T Consensus        18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~   97 (467)
T COG2211          18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA   97 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence            344444545555444 45666678899999999999999999999999999999996    67776554 5557788888


Q ss_pred             HHHHhccc
Q 039825           86 PRKAETQS   93 (117)
Q Consensus        86 ~l~a~a~s   93 (117)
                      .++-.+++
T Consensus        98 ~l~F~~p~  105 (467)
T COG2211          98 VLLFITPD  105 (467)
T ss_pred             HHHHcCCC
Confidence            88887775

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.42  E-value=0.35  Score=39.88  Aligned_cols=64  Identities=20%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHHHHHHHHHHh
Q 039825           26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-----RAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-----Rr~vl~~~~~~~sl~t~l~a~   90 (117)
                      ..+.+.+++++|++++|+..+.+...+-+ ..-|++|.++|-+-     ||+=+.++.++-+++....+.
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~   78 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL   78 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            45688999999999999999998888877 56799999999984     554445555554444444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=92.96  E-value=0.13  Score=44.25  Aligned_cols=89  Identities=7%  Similarity=-0.165  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHH----HHHHH-----HHHHHHHHHHHHHHhhhhchHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDS----LTLFR-----SIVQSSCYPLAAYLFVHHNRAHVIAL   76 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~----l~s~~-----~l~~~l~~p~~G~LaDR~GRr~vl~~   76 (117)
                      +-+...+..|++-++-..-.+.....|-++.++.+++.-.    -.+..     ..++..+.++..++.|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5566677788877776667777888888888888776554    11111     22233366677889999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 039825           77 ESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a~s~   94 (117)
                      |..+.+++.+..++..|.
T Consensus       384 GF~~~~i~~~~~~~~y~~  401 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQ  401 (538)
T ss_pred             hHHHHHHHHHHHcCCccc
Confidence            999999999999988773

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=92.78  E-value=3.1  Score=34.14  Aligned_cols=76  Identities=7%  Similarity=-0.063  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825           16 IMERADVSLLPGVYKEVGAALH-TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET   91 (117)
Q Consensus        16 ~~d~~D~~il~~~lp~i~~~~~-ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a   91 (117)
                      ++...-........+..-+|.| .+....|.+.+...++=.+.-...+++..|+|-|+++.++.+.|.+=-.+.++.
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444455555 777778877777777777777889999999999999999999988877777776

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.71  E-value=1.5  Score=31.77  Aligned_cols=48  Identities=8%  Similarity=-0.116  Sum_probs=36.8

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825           43 LDSLT-LFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE   90 (117)
Q Consensus        43 ~G~l~-s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~   90 (117)
                      .|... ++.....+++.++.+.+.+++|.|+.+.+|.+.|.+..+..-.
T Consensus        38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~   86 (156)
T PF05978_consen   38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY   86 (156)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            34444 3455666778888899999999999999999999977755444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=92.64  E-value=0.71  Score=39.00  Aligned_cols=53  Identities=2%  Similarity=-0.240  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH-HHHHHHHHHHHhccc
Q 039825           41 IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES-NTEPVPVPRKAETQS   93 (117)
Q Consensus        41 ~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~-~~~sl~t~l~a~a~s   93 (117)
                      +-.|...++..+.+++.+|+.|.++|+.|+||...... .+-.+.+....++++
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            45777788999999999999999999999887665444 445555666777766

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.40  E-value=0.098  Score=44.16  Aligned_cols=68  Identities=15%  Similarity=-0.145  Sum_probs=55.7

Q ss_pred             HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825           32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN--RAHVIALESNTEPVPVPRKAETQSHRIPLV   99 (117)
Q Consensus        32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~sl~t~l~a~a~s~~~~l~   99 (117)
                      ..|.+..+.-|+|....=..+.++++.++.|.++||++  |-..-..+++..+......-+++++.++.+
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~v  366 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWV  366 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhh
Confidence            45567745559999988889999999999999999999  866666777888888888888888887544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=92.08  E-value=0.0015  Score=52.32  Aligned_cols=83  Identities=10%  Similarity=-0.048  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      ++.+..+.+..+........+....+.+.+..+.+..  -.......+...++.++..++.||+|||+++..+..+-++.
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAIC  329 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence            4444444444443333333444456777777887776  11112334555567777789999999999999988887777


Q ss_pred             HHHHH
Q 039825           85 VPRKA   89 (117)
Q Consensus        85 t~l~a   89 (117)
                      ....+
T Consensus       330 ~~~~~  334 (451)
T PF00083_consen  330 SLILG  334 (451)
T ss_pred             ccccc
Confidence            76664

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=91.88  E-value=1.8  Score=36.26  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchHHH-------HHHHHHHHHHHHH
Q 039825           44 DSLTLFRSIVQSSCYPLAAYLFVHHNRAHV-------IALESNTEPVPVP   86 (117)
Q Consensus        44 G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v-------l~~~~~~~sl~t~   86 (117)
                      +++.+...+...+.+|+.|++.||+|+|+.       +..|.++-+++.+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            445555667788999999999999999973       6777777665553

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.00  E-value=0.079  Score=43.34  Aligned_cols=64  Identities=6%  Similarity=-0.096  Sum_probs=48.8

Q ss_pred             HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      +-+..+....|+|.+.-+..-...+.+.+.|-|+||-|||+.-+.-++.|.+.+ ++-.+|.|..
T Consensus        63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkV  126 (454)
T KOG4332|consen   63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKV  126 (454)
T ss_pred             eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEE
Confidence            345577788899999988888888999999999999999998776666666654 3334455544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=90.56  E-value=9.6  Score=32.19  Aligned_cols=81  Identities=6%  Similarity=-0.140  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825           16 IMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        16 ~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~   94 (117)
                      ++-.--+......++...+| .|++..|.+...+.+..+..+|-...-++..|+.-.|++++..+.--+-.+..+++.|+
T Consensus       246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~  325 (422)
T COG0738         246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV  325 (422)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            33333334444445555555 89999999999999999999999888899999999999998887666666667777775


Q ss_pred             ch
Q 039825           95 RI   96 (117)
Q Consensus        95 ~~   96 (117)
                      ..
T Consensus       326 v~  327 (422)
T COG0738         326 VA  327 (422)
T ss_pred             HH
Confidence            54

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=89.05  E-value=7.4  Score=33.79  Aligned_cols=99  Identities=17%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADV-SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNT   80 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~-~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~   80 (117)
                      +.|+....+...-.++.+-. .+..-++..+..++|.+..+..-.++.+.-.+.......++++|-| ||-+.+.++.++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34554444333333333333 2346778999999999999999999999999999999999999975 777999999988


Q ss_pred             HHHHHHHHHhccccchhhHhhcCCC
Q 039825           81 EPVPVPRKAETQSHRIPLVALFPEP  105 (117)
Q Consensus        81 ~sl~t~l~a~a~s~~~~l~~~~~~~  105 (117)
                      +-++..+..++    ..+..+.|++
T Consensus       114 ~~~G~~~lt~~----a~~~~l~p~~  134 (571)
T KOG1237|consen  114 SLLGLFGLTLS----AMIPALLPFM  134 (571)
T ss_pred             HHHHHHHHHHH----HHhhhcCCcc
Confidence            88885554443    3344444444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=88.80  E-value=7  Score=32.37  Aligned_cols=75  Identities=8%  Similarity=-0.011  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhCCCh----hhhHHHHHHHHHHHHHHHHHHHHHhhhhch-----HHH--HHHHHHHHHHH
Q 039825           16 IMERADVSLLPGVYKEVGAALHTDP----IGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-----AHV--IALESNTEPVP   84 (117)
Q Consensus        16 ~~d~~D~~il~~~lp~i~~~~~ls~----~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-----r~v--l~~~~~~~sl~   84 (117)
                      ++.....|.-+.+....+++.+.+.    ...+++.+...+...+.+|+..++--|.+|     +..  +.+|.++.+++
T Consensus       283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~  362 (475)
T TIGR00924       283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS  362 (475)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            3344444544443334444444332    237788899999999999886654333333     333  37788888888


Q ss_pred             HHHHHh
Q 039825           85 VPRKAE   90 (117)
Q Consensus        85 t~l~a~   90 (117)
                      .+..++
T Consensus       363 ~~~~~~  368 (475)
T TIGR00924       363 FLTFAA  368 (475)
T ss_pred             HHHHHH
Confidence            777665

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=88.58  E-value=7  Score=32.65  Aligned_cols=52  Identities=6%  Similarity=-0.135  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825           43 LDSLTLFRSIVQSSCYPLA----AYLFVHHNRAHVIALESNTEPVPVPRKAETQSH   94 (117)
Q Consensus        43 ~G~l~s~~~l~~~l~~p~~----G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~   94 (117)
                      .+++.+...+...+.+|+.    +++.||++..+.+.+|.++.+++.+..++++++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~  373 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF  373 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666667776666666666    777777777799999999999998887777553

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=87.12  E-value=9  Score=33.62  Aligned_cols=87  Identities=8%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhCCCh---hhhHHHHHHHHHHHHHHHHHHHHHhhhhchH-HHHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLPGVYKEVGA-ALHTDP---IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA-HVIALESN   79 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~---~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr-~vl~~~~~   79 (117)
                      +|.+....+..++.++-...+....|.... -++-+.   .+.|++.....++...++.+.|.+.-+++|- +.+.++..
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~  388 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV  388 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence            355566556666666666666666666544 344444   3678888889999999999999999887765 55557766


Q ss_pred             HHHHHHHHHHhc
Q 039825           80 TEPVPVPRKAET   91 (117)
Q Consensus        80 ~~sl~t~l~a~a   91 (117)
                      +..++..+++.+
T Consensus       389 ~~ta~~Gama~~  400 (599)
T PF06609_consen  389 LMTAFCGAMAAV  400 (599)
T ss_pred             HHHHHHHHHHHc
Confidence            666655555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=86.92  E-value=10  Score=31.24  Aligned_cols=67  Identities=9%  Similarity=-0.127  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825           27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI   96 (117)
Q Consensus        27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~   96 (117)
                      .-+......+|.+.   ..................+.+.||+|||.....+..+-+++.+..++..+...
T Consensus       339 ~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (521)
T KOG0255|consen  339 YGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG  405 (521)
T ss_pred             HhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            33444444455443   33333333355555666689999999999999999999999999998866544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=85.50  E-value=10  Score=31.83  Aligned_cols=59  Identities=15%  Similarity=0.021  Sum_probs=46.6

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHH
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV-HHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD-R~GRr~vl~~~~~~~sl~t~l   87 (117)
                      -|+=.+-||+|..|-..+......+..++-...|++.. |.|.++...+++.+-.++..+
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l  291 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL  291 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            44556779999999999999999999999999999988 666667766666655554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=85.38  E-value=7.3  Score=24.75  Aligned_cols=40  Identities=10%  Similarity=-0.051  Sum_probs=30.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825           41 IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus        41 ~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      ...|...+...++..++....|.+.|..|.+..+......
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL  126 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence            3456666778899999999999999999987766654443

>TIGR01272 gluP glucose/galactose transporter

Probab=85.10  E-value=12  Score=29.19  Aligned_cols=47  Identities=13%  Similarity=-0.092  Sum_probs=30.4

Q ss_pred             HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825           32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES   78 (117)
Q Consensus        32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~   78 (117)
                      ..++++-...+.+.+.....++.+++.++.|.++|++|.+..+...+
T Consensus       255 a~~~~~~~~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       255 ALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHhhhhhhhhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            33444322233343445666778888889999999999877655433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03612 spermidine synthase; Provisional

Probab=84.77  E-value=19  Score=30.67  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=32.4

Q ss_pred             HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825           32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA   71 (117)
Q Consensus        32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr   71 (117)
                      +.--+|-+..+.+.+++++..++++|+.+.|++.++--|+
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~   80 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG   80 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            3444688888999999999999999999999987544444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=81.94  E-value=27  Score=29.30  Aligned_cols=74  Identities=8%  Similarity=-0.108  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      ++.+++..+=|+.............++-|.++.++|.+=+...+.-..+.....++..|+|-.|.-.+++.+-.
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~  334 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQW  334 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            44455555555554444445445555559999999999999999999999999999999999999888865533

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.63
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.6
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.38
2xut_A	524	Proton/peptide symporter family protein; transport	99.22
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.12
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.69
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.21
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.52
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.37

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.63  E-value=3.6e-15  Score=115.44  Aligned_cols=99  Identities=12%  Similarity=-0.106  Sum_probs=92.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +++++.+..+++..++.+++..+.+.++|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            35577788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HhccccchhhHh
Q 039825           82 PVPVPRK---AETQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~---a~a~s~~~~l~~  100 (117)
                      +++++++   ++++|++.+++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~  123 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVG  123 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccccccHHHHHHH
Confidence            9999999   888999887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.60  E-value=2.9e-15  Score=118.02  Aligned_cols=82  Identities=12%  Similarity=0.035  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCC--------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSLLPGVYKEVGAALHT--------DPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT   80 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~l--------s~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~   80 (117)
                      ++.++|.+++++|..+++.++|.++++++.        +.++.|++.+++.+++.+|++++|+++||+|||+++.++.++
T Consensus        15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l   94 (491)
T 4gc0_A           15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            445778899999999999999999999843        346789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 039825           81 EPVPVPRKAE   90 (117)
Q Consensus        81 ~sl~t~l~a~   90 (117)
                      +.++++++++
T Consensus        95 ~~i~~i~~a~  104 (491)
T 4gc0_A           95 FFISGVGSAW  104 (491)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999999995

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.57  E-value=1.4e-14  Score=112.26  Aligned_cols=98  Identities=7%  Similarity=-0.231  Sum_probs=92.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825            2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE   81 (117)
Q Consensus         2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~   81 (117)
                      +++|+.+..+.++.++++++...++..+|.+.+++ .+..|.|++.+++.+++.++++++|+++||+|||+++..+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            35678889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh----ccccchhhHh
Q 039825           82 PVPVPRKAE----TQSHRIPLVA  100 (117)
Q Consensus        82 sl~t~l~a~----a~s~~~~l~~  100 (117)
                      +++++++++    ++|++.+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~  125 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVL  125 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHH
T ss_pred             HHHHHHHHhhhhccccHHHHHHH
Confidence            999999999    9998886654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.45  E-value=1.6e-13  Score=104.91  Aligned_cols=93  Identities=10%  Similarity=0.004  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR   87 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l   87 (117)
                      +++++++.+++.++..++.+.+|.+.+++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+..++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccchhhHh
Q 039825           88 KAETQSHRIPLVA  100 (117)
Q Consensus        88 ~a~a~s~~~~l~~  100 (117)
                      +++++|++.+++.
T Consensus        82 ~~~~~~~~~l~~~   94 (375)
T 2gfp_A           82 AVTTSSLTVLIAA   94 (375)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHH
Confidence            9999888776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.38  E-value=5.7e-12  Score=99.39  Aligned_cols=98  Identities=7%  Similarity=-0.081  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH-----hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLL-PGVYKEVGAA-----LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIA   75 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il-~~~lp~i~~~-----~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~   75 (117)
                      ++++.++.+.+..+++.+....+ +.+.+.++++     +|++..|.|++.+.+.+++.++++++|+++|| +|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            34456677777777777777655 4455556666     99999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHh
Q 039825           76 LESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        76 ~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      .+.++++++++++++++|++.+++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~  114 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFGASALFGS  114 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999876654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.22  E-value=5.2e-11  Score=94.78  Aligned_cols=95  Identities=12%  Similarity=-0.158  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhC------CChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHH
Q 039825            5 NLTMALVNLAGIMERADVSLLP-GVYKEVGAALH------TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIAL   76 (117)
Q Consensus         5 ~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~------ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~   76 (117)
                      ++.++.+.++.+++.+....+. .+.+.+++++|      ++..+.|++.+++.+++.++++++|+++||+ |||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3444556666666766665444 44455788899      9999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhcc-ccchhhH
Q 039825           77 ESNTEPVPVPRKAETQ-SHRIPLV   99 (117)
Q Consensus        77 ~~~~~sl~t~l~a~a~-s~~~~l~   99 (117)
                      +.++++++.+++++++ |++.+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~  114 (524)
T 2xut_A           91 LSLIYCVGHAFLAIFEHSVQGFYT  114 (524)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHH
Confidence            9999999999999998 8776544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.12  E-value=8.9e-11  Score=92.14  Aligned_cols=76  Identities=11%  Similarity=-0.132  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825            9 ALVNLAGIMERADVSL-LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP   84 (117)
Q Consensus         9 ~ll~l~~~~d~~D~~i-l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~   84 (117)
                      ..+.+..++..+-... .+.+-..+++++|+++.|.|++.+.+.+++.+++|++|+++||+|||+++..+..+++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A           10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3344444444444343 344444577889999999999999999999999999999999999999999998888764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.69  E-value=2.5e-07  Score=71.24  Aligned_cols=86  Identities=9%  Similarity=-0.190  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHH-H-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825           11 VNLAGIMERADVSLLPGVYK-E-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK   88 (117)
Q Consensus        11 l~l~~~~d~~D~~il~~~lp-~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~   88 (117)
                      ..++.++...-...+....| . +++.+|.+..+.|.+.+...++..++.++.|+++||+|||+++..+.++..++.++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33444444443344434444 4 455569999999999999999999999999999999999999999999998888888


Q ss_pred             Hhccccch
Q 039825           89 AETQSHRI   96 (117)
Q Consensus        89 a~a~s~~~   96 (117)
                      .+.++...
T Consensus       343 ~~~~~~~~  350 (438)
T 3o7q_A          343 AFAGGHVG  350 (438)
T ss_dssp             HHCCHHHH
T ss_pred             HHcCCcHH
Confidence            88766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.49  E-value=1.1e-06  Score=67.65  Aligned_cols=87  Identities=5%  Similarity=-0.203  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHHHHHHHHH
Q 039825            6 LTMALVNLAGIMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIALESNTEP   82 (117)
Q Consensus         6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~~~~~~~s   82 (117)
                      +.++.+.+..++...-...+...+|.+.++ +|+++.+.|.+.+...++..++++++|+++||+  |||+.+..+..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            344555566666666566666667777666 899999999999999999999999999999999  99999888877766


Q ss_pred             -HHHHHHHhcc
Q 039825           83 -VPVPRKAETQ   92 (117)
Q Consensus        83 -l~t~l~a~a~   92 (117)
                       ++.++..+.+
T Consensus       332 ~~~~~~~~~~~  342 (451)
T 1pw4_A          332 TIATIVYWMNP  342 (451)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHHHHHHhc
Confidence             6666666653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.21  E-value=6.2e-06  Score=64.41  Aligned_cols=58  Identities=10%  Similarity=0.036  Sum_probs=48.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825           40 PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP   97 (117)
Q Consensus        40 ~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~   97 (117)
                      ..+.|.+.+...++..++.++.|+++||+|||+++..+..+.++.....+++++.+.+
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4567888888888999999999999999999999999988888887777777665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.04  E-value=6.1e-05  Score=58.86  Aligned_cols=86  Identities=10%  Similarity=-0.042  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV   83 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl   83 (117)
                      +++.+..+....+....-...+..-.+.+.++.+.+..+.........+...+++++.+++.||+|||+.+..+....++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            34444555555555554455666667888999999988888888888899999999999999999999998877776666


Q ss_pred             HHHHHH
Q 039825           84 PVPRKA   89 (117)
Q Consensus        84 ~t~l~a   89 (117)
                      +.+..+
T Consensus       355 ~~~~l~  360 (491)
T 4gc0_A          355 GMFSLG  360 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.52  E-value=0.00012  Score=57.27  Aligned_cols=68  Identities=7%  Similarity=-0.015  Sum_probs=48.1

Q ss_pred             HHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH-----HHHHHHHHHHHHHHh
Q 039825           23 SLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA-----LESNTEPVPVPRKAE   90 (117)
Q Consensus        23 ~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~-----~~~~~~sl~t~l~a~   90 (117)
                      ......++ ..++.++.+..+.|.+.+...++..+++++.|++.||+|||+...     .+..+.+++..+.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            33333344 445557888788999999999999999999999999999986654     566666665555544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.37  E-value=5.5e-05  Score=57.22  Aligned_cols=66  Identities=12%  Similarity=-0.057  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825            8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV   73 (117)
Q Consensus         8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v   73 (117)
                      +....+..++...-...+....|.. ++++|.++.+.|.+.+...++..+++++.|++.||+||+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~  267 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW  267 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555655 44589999999999999999999999999999999998433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.67
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.55
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.11
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.62

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.5e-16  Score=120.30  Aligned_cols=89  Identities=4%  Similarity=-0.286  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      .||.++..++++++.+++|++.++.+.|.++ |+|+|.+|.|++.+++.++++++++++|+++||+|||+++..+.++++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            4788999999999999999999999999876 589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 039825           83 VPVPRKAETQ   92 (117)
Q Consensus        83 l~t~l~a~a~   92 (117)
                      +++++++++.
T Consensus       101 ~~~~~~~~~~  110 (447)
T d1pw4a_         101 AVMLFMGFVP  110 (447)
T ss_dssp             HHHHHHHHCH
T ss_pred             HHHhhccccc
Confidence            9999998874

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.6e-14  Score=105.64  Aligned_cols=92  Identities=9%  Similarity=-0.147  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825            4 ENLTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP   82 (117)
Q Consensus         4 r~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s   82 (117)
                      +++-.+.+++.+++..+...+..+.+|. +++++|+|++|.|++.+++.+++.+++|++|+++||+|||+++..+..+++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            4455677788888888888887777775 788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccc
Q 039825           83 VPVPRKAETQSHR   95 (117)
Q Consensus        83 l~t~l~a~a~s~~   95 (117)
                      ++..+++++.+..
T Consensus        85 ~~~~~~~~~~~~~   97 (417)
T d1pv7a_          85 VMFAPFFIFIFGP   97 (417)
T ss_dssp             HTHHHHHHHTHHH
T ss_pred             HHHHHHHHhhhhh
Confidence            9988888765544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.8e-06  Score=60.14  Aligned_cols=72  Identities=10%  Similarity=0.044  Sum_probs=60.1

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825           29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA  100 (117)
Q Consensus        29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~  100 (117)
                      .....++.+.+..+.+...+...++..++.++.|++.||+|||+++..+..+.++.....++++|.+...+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (417)
T d1pv7a_         247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL  318 (417)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHH
Confidence            333344455566778888889999999999999999999999999999999999999999998888775543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00021  Score=52.40  Aligned_cols=57  Identities=9%  Similarity=-0.142  Sum_probs=45.7

Q ss_pred             HHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 039825           19 RADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA   75 (117)
Q Consensus        19 ~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~   75 (117)
                      .............+.++.+.+..+.+...+...++..++.++.|+++||++||+...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  319 (447)
T d1pw4a_         263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  319 (447)
T ss_dssp             HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             hhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence            333344445555667788999999999999999999999999999999999875433