Citrus Sinensis ID: 039893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGSH
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccEEEEEEEEEccccEEEEEEEEHHHHcccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEcccccEEEEEEEccccccEEEEEccccccccccccccccccEEccccccc
Coil and Loop (DISEMBL)
msdtcgncdcadrsqcvkkgssyaadFVETDLSFVSTVVVMDVQAaeaegnckcgptcacvnctcgsh
Flexible Loop (DISEMBL)
msdtcgncdcadrsqcVKKGSSYAADFVETDLSFVSTVVVMDVQAAEaegnckcgptcacvnctcgsh
Low Complexity Region (SEG)
MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGSH
Disordered region (IsUnstruct)
******NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC***
Disordered Region (DISOPRED)
***T*GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG**
Disordered Region (DISEMBL)
MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGSH
Disordered Region (DISPRO)
****CGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q96386	65	Metallothionein-like prot	N/A	no	0.941	0.984	0.696	8e-20
Q40256	65	Metallothionein-like prot	N/A	no	0.926	0.969	0.609	5e-15
P43389	63	Metallothionein-like prot	N/A	no	0.911	0.984	0.676	7e-15
O48951	64	Metallothionein-like prot	N/A	no	0.941	1.0	0.584	1e-12
O24059	66	Metallothionein-like prot	N/A	no	0.955	0.984	0.590	3e-12
A1YTM8	62	Metallothionein-like prot	yes	no	0.897	0.983	0.545	5e-12
A2WLS0	62	Metallothionein-like prot	N/A	no	0.897	0.983	0.545	5e-12
A3B0Y1	65	Metallothionein-like prot	no	no	0.955	1.0	0.492	6e-10
A2Y1D7	65	Metallothionein-like prot	N/A	no	0.955	1.0	0.477	2e-09
Q40854	60	Metallothionein-like prot	N/A	no	0.852	0.966	0.476	7e-06

>sp|Q96386|MT3_CARPA Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 2/66 (3%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C
Sbjct: 1  MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSC 58

Query: 61 VNCTCG 66
           NCTCG
Sbjct: 59 TNCTCG 64

Metallothioneins have a high content of cysteine residues that bind various heavy metals.
Carica papaya (taxid: 3649)

>sp|Q40256|MT3_MUSAC Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 4  TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 63
          TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C
Sbjct: 3  TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDC 61

Query: 64 TCGS 67
           CG+
Sbjct: 62 KCGN 65

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Musa acuminata (taxid: 4641)

>sp|P43389|MT3_ACTDE Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 49/65 (75%), Gaps = 3/65 (4%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C C
Sbjct: 1  MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPC 57

Query: 61 VNCTC 65
          VNCTC
Sbjct: 58 VNCTC 62

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Actinidia deliciosa (taxid: 3627)

>sp|O48951|MT3_PRUAV Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CAC
Sbjct: 1  MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCAC 59

Query: 61 VNCTC 65
          V+C C
Sbjct: 60 VDCKC 64

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Prunus avium (taxid: 42229)

>sp|O24059|MT3_MALDO Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+C
Sbjct: 1  MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSC 59

Query: 61 VNCTCG 66
          V+CTCG
Sbjct: 60 VSCTCG 65

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Malus domestica (taxid: 3750)

>sp|A1YTM8|MT3A_ORYSJ Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSC 55

Query: 61 VNCTCG 66
           +C CG
Sbjct: 56 TDCKCG 61

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WLS0|MT3A_ORYSI Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSC 55

Query: 61 VNCTCG 66
           +C CG
Sbjct: 56 TDCKCG 61

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A3B0Y1|MT3B_ORYSJ Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSC 58

Query: 61 VNCTCGS 67
            C CG 
Sbjct: 59 AGCNCGK 65

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y1D7|MT3B_ORYSI Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C
Sbjct: 1  MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSC 58

Query: 61 VNCTCGS 67
            C CG 
Sbjct: 59 AGCNCGK 65

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q40854|MT3_PICGL Metallothionein-like protein EMB30 OS=Picea glauca GN=EMB30 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS  CGNCDCAD+SQC KKG       VET         V        E +CKCGP C C
Sbjct: 1  MSSDCGNCDCADKSQCTKKGFQIDG-IVETSYEMGHGGDV------SLENDCKCGPNCQC 53

Query: 61 VNCTC 65
            CTC
Sbjct: 54 GTCTC 58

Metallothioneins have a high content of cysteine residues that bind various heavy metals.

Picea glauca (taxid: 3330)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
119367461	68	putative metallothionein-like protein [C	1.0	1.0	1.0	1e-30
12830830	68	metallothionein-like protein [Citrus uns	1.0	1.0	0.985	4e-30
255569714	66	conserved hypothetical protein [Ricinus	0.955	0.984	0.742	8e-19
2497906	65	RecName: Full=Metallothionein-like prote	0.941	0.984	0.696	3e-18
255581827	66	conserved hypothetical protein [Ricinus	0.955	0.984	0.742	5e-18
312985277	66	metallothionein 3-like protein [Hevea br	0.955	0.984	0.727	9e-18
282848222	67	metallothionein-like MT-3 [Jatropha curc	0.955	0.970	0.746	9e-18
225461447	65	PREDICTED: metallothionein-like protein-	0.911	0.953	0.698	2e-16
185178054	67	type 3 metallothionein [Prosopis juliflo	0.970	0.985	0.575	5e-15
388491130	65	unknown [Lotus japonicus]	0.941	0.984	0.666	1e-14

>gi|119367461|gb|ABL67648.1| putative metallothionein-like protein [Citrus hybrid cultivar]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC
Sbjct: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60

Query: 61 VNCTCGSH 68
          VNCTCGSH
Sbjct: 61 VNCTCGSH 68

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12830830|gb|AAK08208.1|AF320905_1 metallothionein-like protein [Citrus unshiu] gi|12830832|gb|AAK08209.1|AF320906_1 metallothionein-like protein [Citrus unshiu] gi|3308982|dbj|BAA31562.1| metallothionein-like protein [Citrus unshiu] gi|158936952|dbj|BAF91493.1| metallothionein type 3 [Citrus unshiu]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/68 (98%), Positives = 67/68 (98%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAE EGNCKCGPTCAC
Sbjct: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCAC 60

Query: 61 VNCTCGSH 68
          VNCTCGSH
Sbjct: 61 VNCTCGSH 68

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569714|ref|XP_002525821.1| conserved hypothetical protein [Ricinus communis] gi|223534826|gb|EEF36515.1| conserved hypothetical protein [Ricinus communis]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS TCGNCDCAD+SQCVKKGSSY AD VET+ SFVST ++MDV AAE +G CKCG +C C
Sbjct: 1  MSSTCGNCDCADKSQCVKKGSSYTADIVETEKSFVST-IIMDVPAAEHDGKCKCGASCTC 59

Query: 61 VNCTCG 66
          V CTCG
Sbjct: 60 VTCTCG 65

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2497906|sp|Q96386.1|MT3_CARPA RecName: Full=Metallothionein-like protein type 3; Short=MT-3 gi|1566700|emb|CAA69624.1| metallothionein-like protein [Carica papaya] gi|354464673|gb|AER26532.1| metallothionein-like protein [Carica papaya]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 2/66 (3%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C
Sbjct: 1  MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSC 58

Query: 61 VNCTCG 66
           NCTCG
Sbjct: 59 TNCTCG 64

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581827|ref|XP_002531714.1| conserved hypothetical protein [Ricinus communis] gi|223528657|gb|EEF30673.1| conserved hypothetical protein [Ricinus communis]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS TCGNCDCAD+SQCVKKGSSY AD VET+ S VST +VM+V AAE +G CKCG +C C
Sbjct: 1  MSSTCGNCDCADKSQCVKKGSSYTADVVETEKSSVST-IVMEVPAAEHDGKCKCGASCTC 59

Query: 61 VNCTCG 66
          VNCTCG
Sbjct: 60 VNCTCG 65

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312985277|gb|ADR30789.1| metallothionein 3-like protein [Hevea brasiliensis]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS TCGNCDCAD+SQCVKKGSSY AD VET+ SFVST VVM+V A E +G C+CG  C C
Sbjct: 1  MSSTCGNCDCADKSQCVKKGSSYTADIVETEKSFVST-VVMEVPATEPDGKCRCGAGCTC 59

Query: 61 VNCTCG 66
           NCTCG
Sbjct: 60 TNCTCG 65

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282848222|gb|ADB02892.1| metallothionein-like MT-3 [Jatropha curcas]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 56/67 (83%), Gaps = 2/67 (2%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQA-AEAEGNCKCGPTCA 59
          MS TCGNCDCAD+SQCVKKGSSY AD VET+ SFVST +VMDV A AE +G CKCGP+C 
Sbjct: 1  MSSTCGNCDCADKSQCVKKGSSYTADIVETEKSFVST-IVMDVPAGAENDGKCKCGPSCT 59

Query: 60 CVNCTCG 66
          CV+C CG
Sbjct: 60 CVDCGCG 66

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461447|ref|XP_002284956.1| PREDICTED: metallothionein-like protein-like isoform 1 [Vitis vinifera] gi|225461449|ref|XP_002284975.1| PREDICTED: metallothionein-like protein-like isoform 3 [Vitis vinifera] gi|225461451|ref|XP_002284958.1| PREDICTED: metallothionein-like protein-like isoform 2 [Vitis vinifera] gi|225461453|ref|XP_002284978.1| PREDICTED: metallothionein-like protein-like isoform 4 [Vitis vinifera] gi|359493843|ref|XP_003634676.1| PREDICTED: metallothionein-like protein-like [Vitis vinifera] gi|359493845|ref|XP_003634677.1| PREDICTED: metallothionein-like protein-like [Vitis vinifera] gi|7406673|emb|CAB85630.1| putative metallothionein-like protein [Vitis vinifera] gi|302143009|emb|CBI20304.3| unnamed protein product [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)

Query: 4  TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 63
          TCGNCDCAD+SQCVKKG+SY  D VET+ S+V+T VVM+V AA+ EG+CKCG +CAC++C
Sbjct: 3  TCGNCDCADKSQCVKKGNSYGIDIVETEKSYVAT-VVMEVPAAQHEGSCKCGDSCACIDC 61

Query: 64 TCG 66
          TCG
Sbjct: 62 TCG 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185178054|gb|ACC77568.1| type 3 metallothionein [Prosopis juliflora]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 50/66 (75%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MSD CGNCDCAD+SQCVKKG+ Y AD ++ D S+  + ++    A E +G CKCGP+C+C
Sbjct: 1  MSDKCGNCDCADKSQCVKKGNGYVADIIDPDNSYDESYMMAGAAAGEHDGKCKCGPSCSC 60

Query: 61 VNCTCG 66
          V+CTCG
Sbjct: 61 VDCTCG 66

Source: Prosopis juliflora

Species: Prosopis juliflora

Genus: Prosopis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491130|gb|AFK33631.1| unknown [Lotus japonicus]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1  MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCAC 60
          MS +CGNCDCAD+SQC  KG+SY  + VET  S+V TV  MDV AAE +GNCKCG +C C
Sbjct: 1  MSSSCGNCDCADKSQC-GKGNSYGLNIVETQTSYVETVA-MDVSAAEHDGNCKCGASCTC 58

Query: 61 VNCTCG 66
          VNCTCG
Sbjct: 59 VNCTCG 64

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:505006351	69	MT3 "metallothionein 3" [Arabi	0.941	0.927	0.582	4.6e-18
TAIR|locus:2025082	45	MT1A "AT1G07600" [Arabidopsis	0.220	0.333	0.562	0.00019
DICTYBASE|DDB_G0288281	51	DDB_G0288281 "putative metallo	0.220	0.294	0.473	0.00047
TAIR|locus:2025097	45	MT1C "metallothionein 1C" [Ara	0.220	0.333	0.5	0.0006

TAIR|locus:505006351 MT3 "metallothionein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 39/67 (58%), Positives = 48/67 (71%)

Query:     1 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKC--GPTC 58
             MS  CG+CDCAD++QCVKKG+SY  D VET  S+    ++MDV A E   NCKC  G +C
Sbjct:     1 MSSNCGSCDCADKTQCVKKGTSYTFDIVETQESY-KEAMIMDVGAEENNANCKCKCGSSC 59

Query:    59 ACVNCTC 65
             +CVNCTC
Sbjct:    60 SCVNCTC 66

GO:0005576 "extracellular region" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0006878 "cellular copper ion homeostasis" evidence=ISS

TAIR|locus:2025082 MT1A "AT1G07600" [Arabidopsis thaliana (taxid:3702)]

 Score = 61 (26.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query:    51 NCKCGPTCAC-VNCTC 65
             NC CG  C+C  NC C
Sbjct:    30 NCSCGSNCSCGSNCNC 45

GO:0009644 "response to high light intensity" evidence=IEP

GO:0046872 "metal ion binding" evidence=TAS

GO:0046688 "response to copper ion" evidence=IGI;IEP

GO:0005507 "copper ion binding" evidence=IDA

DICTYBASE|DDB_G0288281 DDB_G0288281 "putative metallothionein protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 56 (24.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query:    51 NCKCGPTCA----CVNCTC 65
             +CKCG  C+    C +CTC
Sbjct:    31 DCKCGDKCSSDCKCTSCTC 49

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2025097 MT1C "metallothionein 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 56 (24.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:    51 NCKCGPTCAC-VNCTC 65
             NC CG  C+C  +C C
Sbjct:    30 NCSCGSNCSCGSSCNC 45

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005507 "copper ion binding" evidence=ISS

GO:0046688 "response to copper ion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O24059	MT3_MALDO	No assigned EC number	0.5909	0.9558	0.9848	N/A	no
O48951	MT3_PRUAV	No assigned EC number	0.5846	0.9411	1.0	N/A	no
P43389	MT3_ACTDE	No assigned EC number	0.6769	0.9117	0.9841	N/A	no
A1YTM8	MT3A_ORYSJ	No assigned EC number	0.5454	0.8970	0.9838	yes	no
A2WLS0	MT3A_ORYSI	No assigned EC number	0.5454	0.8970	0.9838	N/A	no
Q40256	MT3_MUSAC	No assigned EC number	0.6093	0.9264	0.9692	N/A	no
Q96386	MT3_CARPA	No assigned EC number	0.6969	0.9411	0.9846	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_301789.1	annotation not avaliable (69 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_301067.1	annotation not avaliable (81 aa)				•			•		0.478

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PF01439	74	Metallothio_2: Metallothionein; InterPro: IPR00034	99.92
PF02068	76	Metallothio_PEC: Plant PEC family metallothionein;	92.9

>PF01439 Metallothio_2: Metallothionein; InterPro: IPR000347 Members of this family are metallothioneins

Probab=99.92  E-value=7.5e-26  Score=141.78  Aligned_cols=61  Identities=38%  Similarity=0.918  Sum_probs=51.4

Q ss_pred             CCCCCC-CCCCCCCCcccCCCCccccceEeeeccceEEEEEEEee-----------ccc-CCCCCCCCCCccCCCCCC
Q 039893            1 MSDTCG-NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQ-----------AAE-AEGNCKCGPTCACVNCTC   65 (68)
Q Consensus         1 MS~~CG-nC~Cg~~c~Cgk~g~~y~~di~e~e~s~~~t~~v~gv~-----------aaE-~~ggCKCG~nC~C~pC~C   65 (68)
                      ||+.|| ||+|||+|||++  +|| |||.|+++++++| ||+||+           +++ ..++||||+||+||||||
T Consensus         1 MsC~CggnCgCGs~C~Cg~--kmy-pdl~~~~~ttt~t-~V~GVAP~k~~~eg~E~~~~~~~~GCKCGsnC~CdPCnC   74 (74)
T PF01439_consen    1 MSCGCGGNCGCGSGCKCGS--KMY-PDLEESETTTTET-LVLGVAPQKGHFEGSEMGAGAGGNGCKCGSNCTCDPCNC   74 (74)
T ss_pred             CCCcCCCcCCCCCCCCcCC--ccc-cchhcccccccee-EEEeeCCCcchhhhhhhhhcccCCCCCCCCCCccCCCcC
Confidence            896588 999999999995  469 9998887788899 999994           111 345899999999999998

These proteins are cysteine rich proteins that bind to heavy metals. Members of this family appear to be closest to Class II metallothioneins.; GO: 0046872 metal ion binding

>PF02068 Metallothio_PEC: Plant PEC family metallothionein; InterPro: IPR000316 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, nickel, etc

Probab=92.90  E-value=0.045  Score=34.84  Aligned_cols=17  Identities=47%  Similarity=1.445  Sum_probs=9.9

Q ss_pred             CCCCCCCccCCCCCCCC
Q 039893           51 NCKCGPTCACVNCTCGS   67 (68)
Q Consensus        51 gCKCG~nC~C~pC~C~~   67 (68)
                      .|.||-.|.||||+|.+
T Consensus        34 ~C~CGEhCgCnPCtC~k   50 (76)
T PF02068_consen   34 TCSCGEHCGCNPCTCPK   50 (76)
T ss_dssp             -BTTTB--TTS--TT--
T ss_pred             cccCCCcccccCccCCC
Confidence            69999999999999976

They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , , ]. An empirical classification into three classes has been proposed by Fowler and coworkers [] and Kojima []. Members of class I are defined to include polypeptides related in the positions of their cysteines to equine MT-1B, and include mammalian MTs as well as MTs from crustaceans and molluscs. Class II groups MTs from a variety of species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units []. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. This system subdivides the MT superfamily into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects []: e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. The inclusion of a MT within a family presupposes that its amino acid sequence is alignable with that of all members. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range: e.g., Family 1: vertebrate MTs. Family 15 consists of planta MTs. Its members are recognised by the sequence pattern [YFH]-x(5,25)-C-[SKD]-C-[GA]-[SDPAT]-x(0,1)-C-x-[CYF] which yields all plant sequences, but also MTCU_HELPO and the non-MT ITB3_HUMAN. The taxonomic range of the members extends to planta. Planta MTs are 45-84 residue proteins, containing 17 conserved cysteines that bind 5 zinc ions. Generally, there are two Cys-rich regions (domain 1 and domain 3) separated by a Cys-poor region (domain 2) and only the domain 2 contains unusual residues. It is believed that the proteins may have a role in Zn2+ homeostasis during embryogenesis. Family 15 includes the following subfamilies: p1, p2, p2v, p3, pec, p21. ; GO: 0008270 zinc ion binding; PDB: 2L62_A 2KAK_A 2L61_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1qjl_A	28	Metallothionein; metal-binding, detoxification, ra	97.87
2kak_A	53	EC protein I/II; metallothionein, solution structu	95.65
1t2y_A	26	Metallothionein, MT; protein fold, no secondary st	93.28
1m0j_A	28	Metallothionein MT_NC; cadmium thiolate-cluster, m	91.12

>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1

Probab=97.87  E-value=7.5e-06  Score=42.68  Aligned_cols=20  Identities=35%  Similarity=1.167  Sum_probs=16.8

Q ss_pred             cCCCCCCCCCCccCCCCCCC
Q 039893           47 EAEGNCKCGPTCACVNCTCG   66 (68)
Q Consensus        47 E~~ggCKCG~nC~C~pC~C~   66 (68)
                      +...+||||++|+|++|+|+
T Consensus         8 ~cg~~CkCgs~C~C~~C~C~   27 (28)
T 1qjl_A            8 KCANGCKCGSGCSCTEGNCA   27 (28)
T ss_dssp             CCCTTCCTTSCCCCBTTBCC
T ss_pred             ccCCCCccCCCcccCCcccc
Confidence            33347999999999999996

>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}

Probab=95.65  E-value=0.005  Score=36.02  Aligned_cols=17  Identities=47%  Similarity=1.538  Sum_probs=15.7

Q ss_pred             CCCCCCCccCCCCCCCC
Q 039893           51 NCKCGPTCACVNCTCGS   67 (68)
Q Consensus        51 gCKCG~nC~C~pC~C~~   67 (68)
                      .|.||-.|.|+||+|.+
T Consensus         5 tC~CGEHCgCnPCtC~k   21 (53)
T 2kak_A            5 TCGCGEHCGCNPCACGR   21 (53)
T ss_dssp             CBTTTBCCTTSCCTTCC
T ss_pred             cccCCCcccccCccCCC
Confidence            69999999999999975

>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1

Probab=93.28  E-value=0.047  Score=27.83  Aligned_cols=16  Identities=44%  Similarity=1.421  Sum_probs=13.3

Q ss_pred             CCCCCCCCCccCCCCC
Q 039893           49 EGNCKCGPTCACVNCT   64 (68)
Q Consensus        49 ~ggCKCG~nC~C~pC~   64 (68)
                      .+.|.||++|+|..|-
T Consensus         8 tgtC~Cg~~CsC~gC~   23 (26)
T 1t2y_A            8 ASSCNCGSGCSCSNCG   23 (26)
T ss_dssp             TTTCCCSSSCCSSTTS
T ss_pred             CccccCCCCccccCcc
Confidence            3579999999999874

>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1

Probab=91.12  E-value=0.12  Score=26.70  Aligned_cols=17  Identities=53%  Similarity=1.726  Sum_probs=15.1

Q ss_pred             CCCCCCCCccCCCCCCC
Q 039893           50 GNCKCGPTCACVNCTCG   66 (68)
Q Consensus        50 ggCKCG~nC~C~pC~C~   66 (68)
                      +.|.|+++|+|..|.|.
T Consensus         9 gsC~C~~sCkC~~C~Ct   25 (28)
T 1m0j_A            9 GTCNCGGSCTCTNCSCK   25 (28)
T ss_dssp             SSCCCSSSCCSSSCCCT
T ss_pred             CcccCCCccccCCccCc
Confidence            46999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1m0ja_	28	Metallothionein {Black rockcod (Notothenia coriice	96.09
d1qjla_	28	Metallothionein {Purple sea urchin (Strongylocentr	92.29
d1t2ya_	26	Metallothionein {Neurospora crassa [TaxId: 5141]}	87.05

>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}

class: Small proteins
fold: Metallothionein
superfamily: Metallothionein
family: Metallothionein
domain: Metallothionein
species: Black rockcod (Notothenia coriiceps) [TaxId: 8208]

Probab=96.09  E-value=0.0015  Score=32.41  Aligned_cols=18  Identities=56%  Similarity=1.671  Sum_probs=16.2

Q ss_pred             CCCCCCCCccCCCCCCCC
Q 039893           50 GNCKCGPTCACVNCTCGS   67 (68)
Q Consensus        50 ggCKCG~nC~C~pC~C~~   67 (68)
                      +.|.||-+|+|..|+|+.
T Consensus         9 gtcncggsctctncscks   26 (28)
T d1m0ja_           9 GTCNCGGSCTCTNCSCKS   26 (28)
T ss_dssp             SSCCCSSSCCSSSCCCTT
T ss_pred             cccccCCceeecCccccc
Confidence            469999999999999984

>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}

class: Small proteins
fold: Metallothionein
superfamily: Metallothionein
family: Metallothionein
domain: Metallothionein
species: Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]

Probab=92.29  E-value=0.038  Score=27.10  Aligned_cols=15  Identities=40%  Similarity=1.252  Sum_probs=11.4

Q ss_pred             CCCCCCCCccCCCCC
Q 039893           50 GNCKCGPTCACVNCT   64 (68)
Q Consensus        50 ggCKCG~nC~C~pC~   64 (68)
                      ++||||+.|+|.-=+
T Consensus        11 ngckcgsgcsctegn   25 (28)
T d1qjla_          11 NGCKCGSGCSCTEGN   25 (28)
T ss_dssp             TTCCTTSCCCCBTTB
T ss_pred             cCcccCCCccccCCc
Confidence            479999999986433

>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}

class: Small proteins
fold: Metallothionein
superfamily: Metallothionein
family: Metallothionein
domain: Metallothionein
species: Neurospora crassa [TaxId: 5141]

Probab=87.05  E-value=0.13  Score=24.73  Aligned_cols=14  Identities=50%  Similarity=1.614  Sum_probs=11.9

Q ss_pred             CCCCCCCccCCCCC
Q 039893           51 NCKCGPTCACVNCT   64 (68)
Q Consensus        51 gCKCG~nC~C~pC~   64 (68)
                      .|.||+.|+|..|-
T Consensus        10 scncgsgcscsncg   23 (26)
T d1t2ya_          10 SCNCGSGCSCSNCG   23 (26)
T ss_dssp             TCCCSSSCCSSTTS
T ss_pred             cccCCCCccccccc
Confidence            59999999998874