Citrus Sinensis ID: 039949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MEKVASTVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANSGGNNSTTVT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHccccHHHEEEEccccccccccEEcHHHHHcccHHccccccccHcHHHcccccccccHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MEKVASTVHVNTKVLFTVFIVTSagfvssdfnqgrkecgdqladfsaclpfvggkaksptptccsnitkegsktrKCLCLLVkdrndprhgfkmNATLALslpsvrhapakvsdcpallnppsnptdAQVLEQLAansggnnsttvt
Flexible Loop (DISEMBL)
mekvastvhvntkvLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFvggkaksptptccsnitkegsktrkCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLaansggnnsttvt
Low Complexity Region (SEG)
MEKVASTVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANSGGNNSTTVT
Disordered region (IsUnstruct)
******TVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALS**********************************************
Disordered Region (DISOPRED)
*********VNTKVLFTVFIVTSAGFV***********G*QLADFSACLPFVG*KAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVS**********************************
Disordered Region (DISEMBL)
MEKVASTVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAAN**********
Disordered Region (DISPRO)
****ASTVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTD***L****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKVASTVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANSGGNNSTTVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q9C7F7	193	Uncharacterized GPI-ancho	no	no	0.680	0.518	0.298	0.0009

>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 37  ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFK--- 93
           EC       + CL F  GKA  P+  CC  +     +  KCLC +++         K   
Sbjct: 34  ECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLG 93

Query: 94  MNATLALSLP-SVRHAPAKVSDCPALLN-PPSNPTDAQVLEQLAANSGGNNSTT 145
           +     + LP S +   A +++CP LL   PS+P DA V          NN+TT
Sbjct: 94  VQEDKLIQLPTSCQLHNASITNCPKLLGISPSSP-DAAVFT--------NNATT 138

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
224091567	122	predicted protein [Populus trichocarpa]	0.809	0.975	0.596	5e-34
147790626	595	hypothetical protein VITISV_016657 [Viti	0.918	0.226	0.503	8e-32
225435694	188	PREDICTED: non-specific lipid-transfer p	0.884	0.691	0.481	3e-31
297746435	171	unnamed protein product [Vitis vinifera]	0.809	0.695	0.512	2e-30
225450281	188	PREDICTED: uncharacterized GPI-anchored	0.918	0.718	0.503	2e-30
224120938	197	predicted protein [Populus trichocarpa]	0.863	0.644	0.519	3e-29
449489104	186	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.768	0.607	0.548	1e-28
449436236	197	PREDICTED: uncharacterized GPI-anchored	0.836	0.624	0.496	2e-28
400131570	193	T4.9 [Malus x robusta]	0.925	0.704	0.474	3e-28
357462701	186	Non-specific lipid-transfer protein-like	0.836	0.661	0.463	4e-27

>gi|224091567|ref|XP_002309285.1| predicted protein [Populus trichocarpa] gi|222855261|gb|EEE92808.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 86/119 (72%)

Query: 17  TVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRK 76
           ++ ++    FV SD    ++EC +QLA  SACLPFVGG  K PTPTCCS + +E SKT K
Sbjct: 4   SIVVLMMFNFVFSDLAADKRECNEQLASLSACLPFVGGDTKVPTPTCCSGLRQEISKTEK 63

Query: 77  CLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLA 135
           CLC+LVKDRN+P  GFK+NATLALSLPS+ HAPA VS CP +L+   N TDAQV E  A
Sbjct: 64  CLCILVKDRNEPDLGFKINATLALSLPSICHAPANVSACPEMLHLAPNSTDAQVFEDFA 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790626|emb|CAN59826.1| hypothetical protein VITISV_016657 [Vitis vinifera]

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 2/137 (1%)

Query: 9   HVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNIT 68
           H    +L  V +V +   V+SD  + ++EC +QL   + CLP+VGG AK+PTP CCS + 
Sbjct: 4   HCTFMILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLK 61

Query: 69  KEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDA 128
           +   K +KCLC+++KDRNDP  G  +NATLAL LPSV HAPA VS CPALL+   N  DA
Sbjct: 62  QVLQKNKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDA 121

Query: 129 QVLEQLAANSGGNNSTT 145
           QV  Q A +S G  S+T
Sbjct: 122 QVFYQFANSSNGTASST 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435694|ref|XP_002283442.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 90/133 (67%), Gaps = 3/133 (2%)

Query: 14  VLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK 73
           +L  + ++ SA   S+DF + R+EC DQL   + CLP+VGG+ KSPT  CC+ + +   K
Sbjct: 13  MLVIMMLLMSA---SADFAKDREECADQLVGLATCLPYVGGEGKSPTLDCCTGLKQVLQK 69

Query: 74  TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQ 133
            RKCLC+L+KDRNDP  G K+NATLA+ LPS  HAPA +S CPALL  P+   DA++ E+
Sbjct: 70  ARKCLCILIKDRNDPNLGLKINATLAMGLPSACHAPANISACPALLQLPAGSPDAKIFEE 129

Query: 134 LAANSGGNNSTTV 146
              ++  + ST+V
Sbjct: 130 YGNSTAASKSTSV 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746435|emb|CBI16491.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 83/119 (69%)

Query: 28  SSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRND 87
           S+DF + R+EC DQL   + CLP+VGG+ KSPT  CC+ + +   K RKCLC+L+KDRND
Sbjct: 7   SADFAKDREECADQLVGLATCLPYVGGEGKSPTLDCCTGLKQVLQKARKCLCILIKDRND 66

Query: 88  PRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANSGGNNSTTV 146
           P  G K+NATLA+ LPS  HAPA +S CPALL  P+   DA++ E+   ++  + ST+V
Sbjct: 67  PNLGLKINATLAMGLPSACHAPANISACPALLQLPAGSPDAKIFEEYGNSTAASKSTSV 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450281|ref|XP_002270671.1| PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera] gi|297741205|emb|CBI32156.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 2/137 (1%)

Query: 9   HVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNIT 68
           H    +L  V +V +   V+SD  + ++EC +QL   + CLP+VGG AK+PTP CCS + 
Sbjct: 4   HCTFMILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLK 61

Query: 69  KEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDA 128
           +   K +KCLC+++KDRNDP  G  +NATLAL LPSV HAPA VS CPALL+   N  DA
Sbjct: 62  QVLQKNKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDA 121

Query: 129 QVLEQLAANSGGNNSTT 145
           QV  Q A +S G  S+T
Sbjct: 122 QVFYQFANSSNGTASST 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120938|ref|XP_002330863.1| predicted protein [Populus trichocarpa] gi|222872685|gb|EEF09816.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 4/131 (3%)

Query: 12  TKVLFTVF-IVTSAGFVS---SDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNI 67
           T +  T+F IV  +  VS   +  ++  +EC +QL   + CLP+VGG AK+PTP CC+ +
Sbjct: 8   TTIRLTMFGIVLMSVMVSLAMAGKDKDSEECAEQLVGLATCLPYVGGDAKAPTPDCCNGL 67

Query: 68  TKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTD 127
            +     +KCLC+++KDRNDP  G K+NATLALSLPSV HAPA VS CPALLN P N  D
Sbjct: 68  KQVLKDNKKCLCVIIKDRNDPELGLKINATLALSLPSVCHAPANVSQCPALLNLPPNSPD 127

Query: 128 AQVLEQLAANS 138
           AQ+  QLA +S
Sbjct: 128 AQIFYQLANSS 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489104|ref|XP_004158216.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized GPI-anchored protein At1g27950-like [Cucumis sativus]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 78/113 (69%)

Query: 26  FVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDR 85
           FV  D  + R+EC  QLA  + CLP+V G AK+PTP CCS + +     +KCLC++V+DR
Sbjct: 17  FVGGDDKKDREECTPQLAGMATCLPYVSGDAKAPTPDCCSGLKEVLKNDKKCLCVIVRDR 76

Query: 86  NDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANS 138
           NDP  G ++N TLALSLP + HA A VS+CPALLN PSN +DAQV  QL   S
Sbjct: 77  NDPDLGLQINVTLALSLPDICHATANVSNCPALLNMPSNSSDAQVFYQLEGKS 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436236|ref|XP_004135899.1| PREDICTED: uncharacterized GPI-anchored protein At1g27950-like [Cucumis sativus]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 84/127 (66%), Gaps = 4/127 (3%)

Query: 13  KVLFTVFIV----TSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNIT 68
           K L+ + ++    +   FV  D  + R+EC  QLA  + CLP+V G AK+PTP CCS + 
Sbjct: 10  KWLWLIMLLLRSPSWVRFVGGDDKKDREECTPQLAGMATCLPYVSGDAKAPTPDCCSGLK 69

Query: 69  KEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDA 128
           +     +KCLC++V+DRNDP  G ++N TLALSLP + HA A VS+CPALLN PSN +DA
Sbjct: 70  EVLQNDKKCLCVIVRDRNDPDLGLQINVTLALSLPDICHATANVSNCPALLNMPSNSSDA 129

Query: 129 QVLEQLA 135
           QV  QL 
Sbjct: 130 QVFYQLG 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131570|emb|CCH50970.1| T4.9 [Malus x robusta]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 88/139 (63%), Gaps = 3/139 (2%)

Query: 7   TVHVNTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSN 66
           +V V +  L  +F+V   GF S + +Q + EC DQL   + CLP+VGG AKSPT  CCS 
Sbjct: 8   SVQVLSCTLVLIFLV---GFGSCNIDQDKAECADQLVGLAPCLPYVGGDAKSPTIDCCSG 64

Query: 67  ITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPT 126
           I     K++KCLC+L+KDR+DP+ G K+NATLAL+LPS  H P  +S C  LLN PSN  
Sbjct: 65  IKVVVQKSKKCLCVLIKDRDDPKLGLKINATLALNLPSSCHVPINISRCVDLLNLPSNSP 124

Query: 127 DAQVLEQLAANSGGNNSTT 145
           DA++       +   +STT
Sbjct: 125 DAKMFRDYENKTEARSSTT 143

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462701|ref|XP_003601632.1| Non-specific lipid-transfer protein-like protein [Medicago truncatula] gi|355490680|gb|AES71883.1| Non-specific lipid-transfer protein-like protein [Medicago truncatula]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 85/123 (69%)

Query: 24  AGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVK 83
           AGFVSSD  + RK+C D+L   ++CLP+VGG A +PT  CC+N+ +  + T+KC+C+L+K
Sbjct: 17  AGFVSSDLTEDRKDCADKLVTLASCLPYVGGSANTPTIDCCTNLKQVLNNTKKCICILIK 76

Query: 84  DRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQLAANSGGNNS 143
           D NDP+ GF MNATLA+ LP+  H P+ +S+C  LL+      +A+V E L  ++  N+S
Sbjct: 77  DSNDPKLGFPMNATLAVQLPNACHIPSNISECVDLLHLSPKSPEAKVFEGLGNSTKTNSS 136

Query: 144 TTV 146
           T +
Sbjct: 137 TPI 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2035711	227	AT1G55260 [Arabidopsis thalian	0.959	0.621	0.430	8.2e-28
TAIR|locus:2050492	204	AT2G44300 [Arabidopsis thalian	0.802	0.578	0.479	3.2e-26
TAIR|locus:2050482	205	AT2G44290 [Arabidopsis thalian	0.809	0.580	0.459	8.4e-26
TAIR|locus:2076406	177	AT3G58550 [Arabidopsis thalian	0.755	0.627	0.486	8.7e-24
TAIR|locus:2031551	193	AT1G73890 [Arabidopsis thalian	0.884	0.673	0.305	1.5e-12
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.748	0.643	0.289	6.6e-10
TAIR|locus:2184817	158	AT5G09370 [Arabidopsis thalian	0.646	0.601	0.373	5.9e-09
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.863	0.747	0.261	4.2e-08
TAIR|locus:2010479	193	LTPG1 "AT1G27950" [Arabidopsis	0.877	0.668	0.282	6.8e-08
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.721	0.579	0.268	1.8e-07

TAIR|locus:2035711 AT1G55260 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 62/144 (43%), Positives = 91/144 (63%)

Query:     7 TVHVNTKVLFTVFIVTSA--GFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCC 64
             T+  +T+ LF   ++TS   GF +SD  Q R+EC +QL + S C+P+VGG AK+PT  CC
Sbjct:    43 TMEKSTRTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCC 102

Query:    65 SNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPA-KVSDCPALLNPPS 123
             +   +   K+ KC+C+LV+D++DP+ G K+NATLA  LPS  H  A  ++DC ++L+ P 
Sbjct:   103 AGFGQVIRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPR 162

Query:   124 NPTDAQVLEQLAANSGGNNSTTVT 147
             N T A+  E L       NST+ T
Sbjct:   163 NSTLAKEFENLGRIEDNYNSTSPT 186

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2050492 AT2G44300 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 58/121 (47%), Positives = 82/121 (67%)

Query:    15 LFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKT 74
             L  V +V +A   + D  + ++EC +QL   + CLP+V G+AKSPTP CCS + +  +  
Sbjct:    15 LIVVAMVVAA---ADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSN 71

Query:    75 RKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQL 134
             +KCLC++++DRNDP  G ++N +LAL+LPSV HA A V+ CPALL+   N  DAQV  QL
Sbjct:    72 KKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPALLHLDPNSPDAQVFYQL 131

Query:   135 A 135
             A
Sbjct:   132 A 132

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2050482 AT2G44290 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 56/122 (45%), Positives = 81/122 (66%)

Query:    14 VLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK 73
             ++    +V +AG   +D  + ++EC  QL   + CLP+V GKAKSPTP CCS + +  + 
Sbjct:    15 LIMVAMVVDAAG---ADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINS 71

Query:    74 TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQVLEQ 133
               KCLC+++++RNDP  G ++N +LAL+LPSV HA A ++ CPALL+   N  DAQV  Q
Sbjct:    72 DMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLHLDPNSPDAQVFYQ 131

Query:   134 LA 135
             LA
Sbjct:   132 LA 133

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2076406 AT3G58550 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 56/115 (48%), Positives = 75/115 (65%)

Query:    27 VSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK--TRKCLCLLVKD 84
             V S+ +Q  K C D ++D  +CLPFV  KAK+P  TCCS +  +  K  TRKCLC LVKD
Sbjct:    27 VRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKIDKGQTRKCLCTLVKD 86

Query:    85 RNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNP-PSNPTDAQVLEQLAANS 138
             R+DP  GFK++A  A+SLPS  H PA +S CP LL+  P +P  +Q+ +Q   +S
Sbjct:    87 RDDPGLGFKVDANRAMSLPSACHVPANISQCPDLLHLLPDSPA-SQIFKQFTESS 140

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2031551 AT1G73890 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/131 (30%), Positives = 65/131 (49%)

Query:    11 NTKVLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKE 70
             ++ +L T+ I  SA F+     Q    C  +L   + C PFV G A+ P   CC ++ + 
Sbjct:     3 SSTLLITLLISLSAFFLRMVLAQVPATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQI 62

Query:    71 GSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQV 130
              S+   CLCL + + +     F +N TLAL LP + + PA  S C +   P   P+D+  
Sbjct:    63 YSQEATCLCLFLNNTSTLSPAFPINQTLALQLPPLCNIPANSSTCSSSF-PGEAPSDSSS 121

Query:   131 LEQLAANSGGN 141
             +    ++S G+
Sbjct:   122 VAPPPSSSTGS 132

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/114 (28%), Positives = 54/114 (47%)

Query:    14 VLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK 73
             ++  +  +  A F+       +  C D L   S CL ++ G + SP+ +CC   +     
Sbjct:     1 MILAILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQS 60

Query:    74 TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSN-PT 126
             + +CLC +V       +GFK N TLAL+LP+  +     +  P+L N   N PT
Sbjct:    61 SPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQ---TPSPSLCNTGGNVPT 111

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2184817 AT5G09370 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 40/107 (37%), Positives = 57/107 (53%)

Query:    27 VSSDFNQGRKECGDQLADFSACLPFV--GGKAKSPTPTCCSNITKEGSKTRK-CLCLLVK 83
             VSS +  G  +C   +     CLPF+  GG A +PT +CCS++ K    T+  CLC  +K
Sbjct:    17 VSSPYVHGASDCDTLVITLFPCLPFISIGGTADTPTASCCSSL-KNILDTKPICLCEGLK 75

Query:    84 DRNDPRHGFKMNATLALSLPSV--RHAPAKVSDCPALLNPPSNPTDA 128
                 P  G K+N T + +LP     +AP  VS C +L  PP++P  A
Sbjct:    76 KA--PL-GIKLNVTKSATLPVACKLNAPP-VSACDSL--PPASPPTA 116

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 34/130 (26%), Positives = 56/130 (43%)

Query:    18 VFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKC 77
             VF+      +SS     +  C + L   S CL ++ G + SP   CC+ +++    +  C
Sbjct:     8 VFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDC 67

Query:    78 LCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK-VSDCPALLNPPSNPTDAQVLEQLAA 136
             LC ++      + G  +N T AL LP   +     VS C        + +D+   E   +
Sbjct:    68 LCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPA-ESPNS 125

Query:   137 NSGGNNSTTV 146
             +  GN S TV
Sbjct:   126 SGPGNGSKTV 135

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2010479 LTPG1 "AT1G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 39/138 (28%), Positives = 59/138 (42%)

Query:     8 VHVNTKVLFTVFIVTSAGFVSSDFNQGR--KECGDQLADFSACLPFVGGKAKSPTPTCCS 65
             +H++  VL T+ IV S    +     G    EC       + CL F  GKA  P+  CC 
Sbjct:     4 LHLHL-VLVTMTIVASIAAAAPAAPGGALADECNQDFQKVTLCLDFATGKATIPSKKCCD 62

Query:    66 NITKEGSKTRKCLCLLVKDRNDPRHGFK---MNATLALSLP-SVRHAPAKVSDCPALLN- 120
              +     +  KCLC +++         K   +     + LP S +   A +++CP LL  
Sbjct:    63 AVEDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGI 122

Query:   121 PPSNPTDAQVLEQLAANS 138
              PS+P DA V    A  +
Sbjct:   123 SPSSP-DAAVFTNNATTT 139

GO:0003674 "molecular_function" evidence=ND

GO:0006869 "lipid transport" evidence=IEA;IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/108 (26%), Positives = 45/108 (41%)

Query:    19 FIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCL 78
             F+   A   S    Q    C   L   S CL ++ G + +P+  CCS +      + +C+
Sbjct:    11 FVALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCI 70

Query:    79 CLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK-VSDCPALLNPPSNP 125
             C  V     P  G  +N T AL LP+  +     ++ C A   P + P
Sbjct:    71 CSAVNSPI-PNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQP 117

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.2248.1 hypothetical protein (122 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	4e-09
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	9e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	0.001
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	0.004

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 49.7 bits (119), Expect = 4e-09
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  FSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPS 104
            + CL ++ G A +P   CCS +        KCLC  +        G K NAT AL+LP+
Sbjct: 1   LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLK-NATRALALPA 59

Query: 105 V 105
            
Sbjct: 60  A 60

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNAT 97
           CG  L   + C  ++ G  + P+  CCS + +  +   +C C  ++       G  +N  
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQLQA---QCRCTAIRAIVLGIEG--INPQ 55

Query: 98  LALSLPSV 105
            A SLPS+
Sbjct: 56  AAASLPSM 63

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPT--CCSNITKEGSKTRKCLCLLVKDRNDPRHGF-KM 94
           CG  L   + CL ++ G ++   P+  CCS +   G  + +C CL ++           +
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQL--RGLNSAQCRCLALRAAVLGILEIPGL 58

Query: 95  NATLALSLPSVRHAPAKVSDC 115
           NA  A SLPS    P   +DC
Sbjct: 59  NAQNAASLPSACGVPPPYTDC 79

Length = 79

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 37  ECGDQLADFSACLPFVGGKAKSPTPTCCSNIT--KEGSKT---RKCLCLLVKDRNDPRHG 91
            CG   +  + CL ++ G   +P+P CCS +      +KT   R+  C  +K        
Sbjct: 2   SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA--AAGI 59

Query: 92  FKMNATLALSLPS 104
             +N   A  LP 
Sbjct: 60  SGLNPGRAAGLPG 72

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.55
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.53
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.52
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.49
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.37
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.07
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.55
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	95.01
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	93.72

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.55  E-value=4.9e-15  Score=102.73  Aligned_cols=71  Identities=25%  Similarity=0.570  Sum_probs=58.7

Q ss_pred             CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-----CccccccccccCCCCCCCCC-CCHHHHhhcccCCCCCC
Q 039949           37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-----TRKCLCLLVKDRNDPRHGFK-MNATLALSLPSVRHAPA  110 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-----~~~ClC~~l~~~~~~~~g~~-in~~~a~~LP~~Cgv~~  110 (147)
                      +|..++..|.||++|++|....|++.||++++++++.     +..|+|+.+++...   ++. ||.+|+++||++||++.
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~---~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAA---GISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccc---ccCCCCHHHHHhChHhcccCC
Confidence            6899999999999999987788999999999998764     23566655776532   333 99999999999999976

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.53  E-value=9.4e-16  Score=106.31  Aligned_cols=81  Identities=31%  Similarity=0.630  Sum_probs=48.7

Q ss_pred             ccCCCCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           32 NQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        32 a~~~~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      +....+|...+....+|..|+++ ...|++.||++++++.+.++.|||+++++..  ..+++||.+|++.||++||++.+
T Consensus        16 ~~~~~~c~~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~~~   92 (96)
T PF14368_consen   16 AACCCSCANSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVPVP   92 (96)
T ss_dssp             --BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS-S
T ss_pred             CCCcchhHHHHhccccchhccCC-CCCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCCCC
Confidence            33556776543333344888884 6799999999999998888999999998753  13556999999999999999985


Q ss_pred             CCCC
Q 039949          112 VSDC  115 (147)
Q Consensus       112 ~s~C  115 (147)
                      .++|
T Consensus        93 ~~~C   96 (96)
T PF14368_consen   93 PSKC   96 (96)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            4666

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.52  E-value=9e-15  Score=94.90  Aligned_cols=63  Identities=32%  Similarity=0.615  Sum_probs=53.6

Q ss_pred             ccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCC
Q 039949           45 FSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        45 L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv  108 (147)
                      |.||++|++|+...|++.||++++++++.++.|+|+++++......+ .+|.++++.||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~-~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccC-cccHHHHHhchHhcCC
Confidence            67999999987788999999999999988899999999886443223 1279999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.49  E-value=1.7e-14  Score=96.96  Aligned_cols=71  Identities=25%  Similarity=0.571  Sum_probs=57.1

Q ss_pred             chhhhccccCchhhhcCCC--CCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCCCCCC
Q 039949           38 CGDQLADFSACLPFVGGKA--KSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDC  115 (147)
Q Consensus        38 C~~~~~~L~pC~~yv~g~~--~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~~s~C  115 (147)
                      |+..+..|.||++|+++++  ..|+..||++++++   +..|+|.+++..   .+. .||.++|++||+.||++++.++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~---~~~-~i~~~~a~~Lp~~Cgv~~p~~~C   73 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL---VLQ-IIDPDKAVYLPAKCGLPLPPSSC   73 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC---ccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence            5666788999999999755  46999999999986   456999887643   233 39999999999999999843766

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.37  E-value=3.9e-13  Score=89.19  Aligned_cols=61  Identities=26%  Similarity=0.603  Sum_probs=52.5

Q ss_pred             ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      .+|.+|++|++++ ..|+++||+.+++.    ..|||+|+++   +.++..||.++|++||++||+++|
T Consensus         4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~----~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG-SPPSAACCAKLKEQ----QSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC-CCCCHHHHHHHhcC----CCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence            5899999999963 68999999999984    4899999987   345556999999999999999874

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.07  E-value=2e-10  Score=75.47  Aligned_cols=76  Identities=30%  Similarity=0.617  Sum_probs=58.4

Q ss_pred             chhhhccccCchhhhcCC--CCCCChhhHHHHHhhcCCCccccccccccCCCCCCC-CCCCHHHHhhcccCCCCCCCCCC
Q 039949           38 CGDQLADFSACLPFVGGK--AKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHG-FKMNATLALSLPSVRHAPAKVSD  114 (147)
Q Consensus        38 C~~~~~~L~pC~~yv~g~--~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g-~~in~~~a~~LP~~Cgv~~~~s~  114 (147)
                      |...+..+.+|.+|+++.  ...|+..||++++.+.  +..|+|.+++........ ..++..++..||+.||+..+.+.
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~   78 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTD   78 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCC
Confidence            566677888999999986  4689999999999996  678999988764322110 02589999999999999875344


Q ss_pred             C
Q 039949          115 C  115 (147)
Q Consensus       115 C  115 (147)
                      |
T Consensus        79 C   79 (79)
T smart00499       79 C   79 (79)
T ss_pred             C
Confidence            4

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.55  E-value=1.3e-09  Score=74.86  Aligned_cols=70  Identities=24%  Similarity=0.602  Sum_probs=54.7

Q ss_pred             ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCC--------CCCCCHHHHhhcccCCCCCCCCCC
Q 039949           43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRH--------GFKMNATLALSLPSVRHAPAKVSD  114 (147)
Q Consensus        43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~--------g~~in~~~a~~LP~~Cgv~~~~s~  114 (147)
                      ..+.+|..|+.+....|+..||++|+++   ++.|+|..|+.......        ...++..+|..||+.||++.+..+
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~   89 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD   89 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            4589999999987678999999999999   68999999876432100        125889999999999999875323


Q ss_pred             C
Q 039949          115 C  115 (147)
Q Consensus       115 C  115 (147)
                      |
T Consensus        90 C   90 (90)
T PF00234_consen   90 C   90 (90)
T ss_dssp             G
T ss_pred             C
Confidence            3

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=95.01  E-value=0.0086  Score=41.57  Aligned_cols=76  Identities=25%  Similarity=0.480  Sum_probs=50.6

Q ss_pred             chhhhccccCchhhhc----CCCCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCC-CCCCHHHHh-hcccCCCCCC
Q 039949           38 CGDQLADFSACLPFVG----GKAKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHG-FKMNATLAL-SLPSVRHAPA  110 (147)
Q Consensus        38 C~~~~~~L~pC~~yv~----g~~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g-~~in~~~a~-~LP~~Cgv~~  110 (147)
                      |..+..+|-.|.+.+.    ..+..+...||+-++.+.+.+ ..|||..+|...   +| +.+|....+ .|-+.||...
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v---lg~i~~~ipv~l~~lln~CGk~~   78 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV---LGLINVNIPVALNLLLNACGKTV   78 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc---ccccccccccHHHHHHHHhCCcC
Confidence            4445557888998882    113457899999999998754 689999887642   45 444443333 4567798876


Q ss_pred             C-CCCCC
Q 039949          111 K-VSDCP  116 (147)
Q Consensus       111 ~-~s~C~  116 (147)
                      | ..+|.
T Consensus        79 p~gf~C~   85 (85)
T PF14547_consen   79 PSGFTCP   85 (85)
T ss_pred             cCCCcCC
Confidence            3 34663

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=93.72  E-value=0.052  Score=37.70  Aligned_cols=72  Identities=22%  Similarity=0.409  Sum_probs=49.3

Q ss_pred             CchhhhccccCchhhhcCC----CCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCCCCCCHHHHhh-cccCCCCCC
Q 039949           37 ECGDQLADFSACLPFVGGK----AKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHGFKMNATLALS-LPSVRHAPA  110 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~----~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g~~in~~~a~~-LP~~Cgv~~  110 (147)
                      .|..+..+|-.|.+-+..-    +..|..+||+-++.+.+.+ ..|+|..+|..   .+|+.+|....+. +-+.||-..
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan---~lgi~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN---ILGISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc---ccCcccccChhHHHHHHHHcCcC
Confidence            4655556777888877421    3467799999999998754 78999988863   2575555454443 345788776


Q ss_pred             C
Q 039949          111 K  111 (147)
Q Consensus       111 ~  111 (147)
                      |
T Consensus        80 P   80 (85)
T cd01958          80 P   80 (85)
T ss_pred             C
Confidence            3

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	1e-07
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	5e-04

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPTCCSNITK-----EGSKTRKCLCLLVKDRNDPRHGF 92
           CG   +  + C+ +  G+   P+  CCS +         +  R+  C  +K+      G 
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL 63

Query: 93  KMNATLALSLPSV--RHAPAKVS---DC 115
             NA  A S+PS      P  +S   DC
Sbjct: 64  --NAGNAASIPSKCGVSIPYTISTSTDC 89

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPTCCS----NITKEGSKTRKCLCLLVKDRNDPRHGFK 93
           CG    + + C+ F+      P   C        +   +  R+ +C  +K       G  
Sbjct: 3   CGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI- 61

Query: 94  MNATLALSLPSV--RHAPAKVS---DC 115
            N   A +LP     + P K+S   +C
Sbjct: 62  -NPNNAEALPGKCGVNIPYKISTSTNC 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.63
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.63
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.61
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.61
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.6
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.59
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.54
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.44
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.43
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	94.57
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	93.35
1s6d_A	103	Albumin 8; all helix, folded LEAF, right-handed su	88.32
1pnb_B	75	Napin BNIB; napin IA and IB, albumin SEED protein,	84.55

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.63  E-value=2.2e-17  Score=115.00  Aligned_cols=79  Identities=25%  Similarity=0.590  Sum_probs=63.9

Q ss_pred             CCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-------CccccccccccCCCCCCCCCCCHHHHhhcccCCCC
Q 039949           36 KECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-------TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-------~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++..|++.||++++++++.       +..|+|  ++..... ++ +||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC--~~~~~~~-~~-~in~~~A~~LP~~C~v   77 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAG-VS-GLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHH--HHHHHTT-ST-TCCHHHHHHHHHHHHC
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEe--ecccccc-cc-CcCHHHHHHHHHHcCC
Confidence            57999999999999999987778999999999999631       268999  4443222 43 6999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 039949          109 PA--KVS---DCPAL  118 (147)
Q Consensus       109 ~~--~~s---~C~~~  118 (147)
                      +.  +++   ||+++
T Consensus        78 ~~p~~is~~~dC~~v   92 (93)
T 1afh_A           78 SIPYTISTSTDCSRV   92 (93)
T ss_dssp             CCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCccC
Confidence            75  454   99874

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.63  E-value=1.6e-17  Score=115.97  Aligned_cols=81  Identities=28%  Similarity=0.576  Sum_probs=66.8

Q ss_pred             CCCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-----CccccccccccCCCCCCCCCCCHHHHhhcccCCCCC
Q 039949           35 RKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-----TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        35 ~~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-----~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~  109 (147)
                      +.+|++++..|.||++|++|+ ..|++.||++++++++.     ++.|+|+.|++.+..  ..+||.++|+.||.+||++
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~-~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~--~~~in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGS--ITKLNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGG--CTTCCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcCC-CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhc--cCCcCHHHHHhhhHhcCCC
Confidence            358999999999999999984 57999999999999764     357888889886543  3459999999999999997


Q ss_pred             C--CCC---CCCCC
Q 039949          110 A--KVS---DCPAL  118 (147)
Q Consensus       110 ~--~~s---~C~~~  118 (147)
                      .  +||   ||+++
T Consensus        78 ~p~~Is~~~dC~~v   91 (93)
T 2ljo_A           78 IPYKISTTTNCNTV   91 (93)
T ss_dssp             CSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCCC
Confidence            6  454   89875

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.61  E-value=3.5e-17  Score=113.67  Aligned_cols=77  Identities=23%  Similarity=0.522  Sum_probs=63.3

Q ss_pred             CCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-------CccccccccccCCCCCCCCCCCHHHHhhcccCCCC
Q 039949           36 KECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-------TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-------~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++. |+ .||++++++++.       ++.|+|  +++.+.. ++ +||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClC--lk~~~~~-~~-~in~~~A~~LP~~C~v   75 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTC--LKSAAGA-IS-GINLGKAAGLPSTCGV   75 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHH--HHHHHHH-CT-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCC--ccccccc-cC-CcChhHHHHHHHHcCC
Confidence            5799999999999999998766 88 999999999764       479999  5654322 43 6999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 039949          109 PA--KVS---DCPAL  118 (147)
Q Consensus       109 ~~--~~s---~C~~~  118 (147)
                      +.  +|+   ||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1t12_A           76 NIPYKISPSTDCSKV   90 (91)
T ss_dssp             CCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCccC
Confidence            76  454   99874

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.61  E-value=4e-17  Score=113.11  Aligned_cols=76  Identities=25%  Similarity=0.539  Sum_probs=62.1

Q ss_pred             CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-------CccccccccccCCCCCCCCCCCHHHHhhcccCCCCC
Q 039949           37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-------TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-------~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~  109 (147)
                      +|+.++..|.||++|++|++. |++.||++++++++.       +..|+|  +++.+.. ++ +||.++|++||++||++
T Consensus         2 ~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClC--lk~~~~~-~~-~in~~~A~~LP~~C~v~   76 (90)
T 1bwo_A            2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNC--LKGIARG-IH-NLNEDNARSIPPKCGVN   76 (90)
T ss_dssp             CHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHH--HHHHHTT-CT-TCCHHHHHTHHHHHTCC
T ss_pred             CHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcC--ccCchhc-cC-CcCHHHHHHHHHHcCCC
Confidence            699999999999999998665 999999999998742       368999  6654332 33 69999999999999997


Q ss_pred             C--CCC---CCCC
Q 039949          110 A--KVS---DCPA  117 (147)
Q Consensus       110 ~--~~s---~C~~  117 (147)
                      +  +++   ||++
T Consensus        77 ~p~~is~~~dC~~   89 (90)
T 1bwo_A           77 LPYTISLNIDCSR   89 (90)
T ss_dssp             CSSCCCTTCCGGG
T ss_pred             CCCCCCCCCCCCC
Confidence            6  454   8875

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.60  E-value=1.1e-16  Score=111.00  Aligned_cols=77  Identities=22%  Similarity=0.530  Sum_probs=62.8

Q ss_pred             CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-------CccccccccccCCCCCCCCCCCHHHHhhcccCCCCC
Q 039949           37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-------TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-------~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~  109 (147)
                      +|+.++..|.||++|++|++. |++.||++++++++.       +..|+|  +++.+.. ++ +||.++|++||++||++
T Consensus         2 ~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC--~k~~~~~-~~-~in~~~A~~LP~~Cgv~   76 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAAGA-VR-GINPNNAEALPGKCGVN   76 (91)
T ss_dssp             CTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHH--HHHHTTC-CS-SCCHHHHHHHHHHHTCC
T ss_pred             CHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcc--cCCcccc-cC-CcCHHHHHHHHHHcCCC
Confidence            699999999999999998665 999999999998653       358999  5654322 43 69999999999999997


Q ss_pred             C--CCC---CCCCC
Q 039949          110 A--KVS---DCPAL  118 (147)
Q Consensus       110 ~--~~s---~C~~~  118 (147)
                      +  +++   ||+++
T Consensus        77 ~p~~is~~~dC~~v   90 (91)
T 1siy_A           77 IPYKISTSTNCNSI   90 (91)
T ss_dssp             CSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCccC
Confidence            5  454   99874

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.59  E-value=5.3e-17  Score=112.88  Aligned_cols=78  Identities=26%  Similarity=0.606  Sum_probs=62.7

Q ss_pred             CCchhhhccccCchhhhcCCCCCCChhhHHHHHhhc-------CCCccccccccccCCCCCCCCCCCHHHHhhcccCCCC
Q 039949           36 KECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEG-------SKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~-------~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv  108 (147)
                      .+|+.+++.|.||++|++|++ .|++.||+++++++       +.++.|+|.+...   +.++ +||.++|++||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~---~~~~-~in~~~A~~LP~~Cgv   76 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLS---ASVP-GVNPNNAAALPGKCGV   76 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH---HHST-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcc---cccC-ccChHHHHHHHHHcCC
Confidence            479999999999999999754 58999999999987       3347899964322   2244 6999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 039949          109 PA--KVS---DCPAL  118 (147)
Q Consensus       109 ~~--~~s---~C~~~  118 (147)
                      ++  +++   ||+++
T Consensus        77 ~~p~~is~~~dC~~v   91 (92)
T 2alg_A           77 SIPYKISASTNCATV   91 (92)
T ss_dssp             CCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCccC
Confidence            76  454   88874

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.54  E-value=3.9e-16  Score=104.98  Aligned_cols=72  Identities=24%  Similarity=0.468  Sum_probs=59.4

Q ss_pred             CCCchhhhccccCchhhhcC-CCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           35 RKECGDQLADFSACLPFVGG-KAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        35 ~~~C~~~~~~L~pC~~yv~g-~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      ..+|+.++.+|.||++|+++ ....|++.||+++++.   ++.|||.++++....  .++||+++|++||++||+++|
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~---~~~ClC~~~~~~~~~--~~gin~~~A~~LP~~Cgv~~p   74 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNSPWLG--SFGVDPELASALPKQCGLANA   74 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC---CHHHHHTTTTCHHHH--HHTBCHHHHHHHHHHTTCSCC
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc---CcCCcCcccCCcchh--hcCcCHHHHHHHHHHcCCCCC
Confidence            35799999999999999997 3578999999999983   579999988752112  234999999999999999875

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.44  E-value=1.3e-14  Score=95.30  Aligned_cols=61  Identities=18%  Similarity=0.410  Sum_probs=52.7

Q ss_pred             ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      ++|.||++|++++ ..|+++||++|++.    ..|+|+|+++.   .++.+||.++|++||++||+++|
T Consensus         5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~~----~~ClC~~~k~~---~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG-AKPSGECCGNLRAQ----QGCFCQYAKDP---TYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC-CCCCHHHHHHHHHH----SSHHHHGGGCS---TTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCCC----CCCCCccccCc---ccccccCHHHHHHHHHHcCCCCC
Confidence            5899999999974 57999999999985    68999999874   24445999999999999999875

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.43  E-value=1.5e-14  Score=95.57  Aligned_cols=64  Identities=27%  Similarity=0.542  Sum_probs=54.1

Q ss_pred             hccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCCCCCC
Q 039949           42 LADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDC  115 (147)
Q Consensus        42 ~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~~s~C  115 (147)
                      .++|.||++|++++ ..|+++||++|++.    ..|+|+|+++.   .++.+||.++|++||++||+++|  +|
T Consensus         5 ~~~L~pC~~~v~~~-~~Ps~~CC~~lk~~----~~ClC~~~k~~---~~~~~in~~~A~~Lp~~Cgv~~P--~C   68 (69)
T 1l6h_A            5 AGQLTVCTGAIAGG-ARPTAACCSSLRAQ----QGCFCQFAKDP---RYGRYVNSPNARKAVSSCGIALP--TC   68 (69)
T ss_dssp             TTTHHHHHHHHTTC-CSTTHHHHHHHHHH----HHHHHHHTTCS---SHHHHTTTTTGGGCCCCCSSCSC--CC
T ss_pred             hhhcccCHHHHcCC-CCCCHHHHHhhCCC----CCCCCccccCc---ccccccCHHHHHHHHHHcCCCCC--CC
Confidence            35899999999974 57999999999985    68999999874   24446999999999999999875  55

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=94.57  E-value=0.0094  Score=39.97  Aligned_cols=67  Identities=27%  Similarity=0.569  Sum_probs=49.8

Q ss_pred             cccCchhhhcCCCCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCCCCCCHHHHhh-cccCCCCCCC-CCCCCC
Q 039949           44 DFSACLPFVGGKAKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHGFKMNATLALS-LPSVRHAPAK-VSDCPA  117 (147)
Q Consensus        44 ~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g~~in~~~a~~-LP~~Cgv~~~-~s~C~~  117 (147)
                      +|-.|.+-+.|. ..|...||+-++.+.+.+ ..|+|..+|-     +|+ +|....+. |-+.||...| ..+|..
T Consensus        10 kLgvCanvL~g~-~~~~~~CC~Ll~GL~dleAAvCLCtaik~-----Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~   79 (80)
T 1hyp_A           10 DLSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLRA-----LGI-LNLNRNLQLILNSCGRSYPSNATCPR   79 (80)
T ss_dssp             CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHHH-----HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhHHHHHhCcC-CCCCCccchhhhCcchhhhhhhhhhhccc-----cce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence            688899988753 337789999999997653 6899988872     465 67766665 4578999874 458863

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=93.35  E-value=0.0032  Score=53.58  Aligned_cols=54  Identities=15%  Similarity=0.387  Sum_probs=37.0

Q ss_pred             hhhHHHHHhhcCCCccccccccccCCCCCC--------CCCCCHHHHhhcccCCCCCCCCCCCCC
Q 039949           61 PTCCSNITKEGSKTRKCLCLLVKDRNDPRH--------GFKMNATLALSLPSVRHAPAKVSDCPA  117 (147)
Q Consensus        61 ~~CC~al~~~~~~~~~ClC~~l~~~~~~~~--------g~~in~~~a~~LP~~Cgv~~~~s~C~~  117 (147)
                      ..||+.|+.+-+ .+.|.|..|+.......        ...+ ..+|..||..||+.. +..|+-
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~-~~~c~~  490 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRA-PQRCDL  490 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCC-CSCCCC
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCC-CccCCc
Confidence            799999998821 28999999876432110        1112 345899999999974 357885

>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3

Probab=88.32  E-value=0.14  Score=35.54  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=50.9

Q ss_pred             CCCCchhhhc--c-ccCchhhhcCCC------------CCCChhhHHHHHhhcCCCccccccccccCCCCCC-CC--CCC
Q 039949           34 GRKECGDQLA--D-FSACLPFVGGKA------------KSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRH-GF--KMN   95 (147)
Q Consensus        34 ~~~~C~~~~~--~-L~pC~~yv~g~~------------~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~-g~--~in   95 (147)
                      ....|...+.  . |.+|..||....            ...-..||..++.+   +..|.|..|+......+ |-  .--
T Consensus         7 ~~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~---~~~CrC~al~~~~Q~q~~g~q~~~~   83 (103)
T 1s6d_A            7 TESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQV   83 (103)
T ss_dssp             CSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHH
T ss_pred             CCcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc---CcccCcHHHHHHHHHHhcchhHHHH
Confidence            4556877763  5 889999997320            12458999999997   68999999976542222 21  112


Q ss_pred             HHHHhhcccCCCCCC
Q 039949           96 ATLALSLPSVRHAPA  110 (147)
Q Consensus        96 ~~~a~~LP~~Cgv~~  110 (147)
                      ..+|..||..||++.
T Consensus        84 ~q~A~~LP~~C~i~p   98 (103)
T 1s6d_A           84 MSMAHNLPIECNLMS   98 (103)
T ss_dssp             HHHHHHHHHHTTSSS
T ss_pred             HHHHHhcHHhcCCCc
Confidence            446778999999963

>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3

Probab=84.55  E-value=0.2  Score=32.76  Aligned_cols=56  Identities=25%  Similarity=0.541  Sum_probs=37.6

Q ss_pred             CCChhhHHHHHhhcCCCccccccccccCCC-----CCCCC---CCCHHHHhhcccCCCCCCCCCCCCC
Q 039949           58 SPTPTCCSNITKEGSKTRKCLCLLVKDRND-----PRHGF---KMNATLALSLPSVRHAPAKVSDCPA  117 (147)
Q Consensus        58 ~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~-----~~~g~---~in~~~a~~LP~~Cgv~~~~s~C~~  117 (147)
                      ..-..||+.|+.+   ++.|.|..|+....     ..++.   .--..+|..||..||+.. +..|.-
T Consensus         9 ~~~qqCC~qL~~~---~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~-~~~C~~   72 (75)
T 1pnb_B            9 WLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-IGTCPF   72 (75)
T ss_dssp             SCTHHHHHHHHTS---CGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTT-TCCCCC
T ss_pred             HHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCC-CCCCCc
Confidence            4568999999997   68999999876421     00111   112456778999999964 246653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-09
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-08

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 48.7 bits (116), Expect = 3e-09
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKT-----RKCLCLLVKDRNDPRHGF 92
           CG   +  + C+ +  G+   P+  CCS +    +       R+  C  +K+        
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VS 61

Query: 93  KMNATLALSLPSV--RHAPAKVS---DC 115
            +NA  A S+PS      P  +S   DC
Sbjct: 62  GLNAGNAASIPSKCGVSIPYTISTSTDC 89

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 38  CGDQLADFSACLPFVGGKAKSPTPTCCSNITK-----EGSKTRKCLCLLVKDRNDPRHGF 92
           CG   +    CL +V G    P+  CC+ +       + S  R+ +C  +K         
Sbjct: 3   CGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARG--IH 59

Query: 93  KMNATLALSLPSV--RHAPAKVS---DC 115
            +N   A S+PS    + P  +S   DC
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDC 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.65
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.59
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.07
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.05
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	90.92
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	89.68
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	88.71
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	84.96
d1tmqb_	117	Trypsin/alpha-amylase inhibitor RBI {Eleusine cora	81.38

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.65  E-value=3.7e-18  Score=117.38  Aligned_cols=82  Identities=24%  Similarity=0.527  Sum_probs=67.5

Q ss_pred             CCCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-----CccccccccccCCCCCCCCCCCHHHHhhcccCCCCC
Q 039949           35 RKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-----TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        35 ~~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-----~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~  109 (147)
                      +.+|.+++..|.||++|++|.+..|++.||++++++++.     ++.|+|+.+++....  ..+||.+|+..||++||++
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~--~~~in~~ra~~LP~~C~v~   78 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VSGLNAGNAASIPSKCGVS   78 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT--CTTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccc--cCCcCHHHHHhhhHhcCCC
Confidence            358999999999999999998888999999999999753     356888779875433  3459999999999999986


Q ss_pred             C--CCC---CCCCC
Q 039949          110 A--KVS---DCPAL  118 (147)
Q Consensus       110 ~--~~s---~C~~~  118 (147)
                      .  +++   ||+++
T Consensus        79 l~~pis~~~dCs~i   92 (93)
T d1fk5a_          79 IPYTISTSTDCSRV   92 (93)
T ss_dssp             CSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCcC
Confidence            5  444   89874

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.59  E-value=2.9e-17  Score=112.46  Aligned_cols=79  Identities=25%  Similarity=0.552  Sum_probs=65.3

Q ss_pred             CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-----CccccccccccCCCCCCCCCCCHHHHhhcccCCCCCC-
Q 039949           37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-----TRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPA-  110 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-----~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~-  110 (147)
                      +|++++..|.||++|++|+ ..|++.||++++++++.     ++.|+|+.+++.+..  ..+||.+||.+||.+||++. 
T Consensus         2 ~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~--~~~in~~ra~~LP~~C~v~~p   78 (91)
T d1mida_           2 NCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARG--IHNLNLNNAASIPSKCNVNVP   78 (91)
T ss_dssp             CHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT--CTTCCHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhccc--CCCcCHHHHHhchHhcCCCCC
Confidence            7999999999999999985 57999999999999753     356888889875433  33599999999999999876 


Q ss_pred             -CCC---CCCCC
Q 039949          111 -KVS---DCPAL  118 (147)
Q Consensus       111 -~~s---~C~~~  118 (147)
                       +++   ||+++
T Consensus        79 ~pis~~~dC~~i   90 (91)
T d1mida_          79 YTISPDIDCSRI   90 (91)
T ss_dssp             SCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCC
Confidence             555   89874

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.07  E-value=1.3e-11  Score=79.33  Aligned_cols=61  Identities=20%  Similarity=0.465  Sum_probs=54.0

Q ss_pred             ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      ..|+||++.+++ +..||..||+.+++.    ..|||+|+++   |.+...||..+|.++-+.||+++|
T Consensus         5 ~~L~~C~~Ai~~-g~~PS~~CC~kLkeQ----~~ClC~Y~kd---P~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           5 SQLAVCASAILS-GAKPSGECCGNLRAQ----QGCFCQYAKD---PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             GGGGGGHHHHHH-CCCCCHHHHHHHHHH----GGGHHHHTTC---TTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             hhccccHHHHhc-CCCCcHHHHHHHHhc----CCccceecCC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            479999999997 458999999999996    5899999998   456667999999999999999985

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.05  E-value=1.4e-11  Score=79.63  Aligned_cols=65  Identities=28%  Similarity=0.588  Sum_probs=55.7

Q ss_pred             CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949           37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK  111 (147)
Q Consensus        37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~  111 (147)
                      .|..  ..|+||++.+++ +..||..||+.+++.    ..|||+|+++   |.+...||..+|.++-+.||+++|
T Consensus         2 ~C~p--~~L~~C~~ai~~-g~~PS~~CC~kLkeQ----~~ClC~Y~k~---P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNA--GQLTVCTGAIAG-GARPTAACCSSLRAQ----QGCFCQFAKD---PRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTT--TTHHHHHHHHTT-CCSTTHHHHHHHHHH----HHHHHHHTTC---SSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCCh--hhccccHHHHhC-CCCCcHHHHHHHHhc----CCccceeccC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            3554  479999999997 457999999999996    5899999998   446667999999999999999986

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=90.92  E-value=0.032  Score=37.34  Aligned_cols=73  Identities=15%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             CCCCchhhh---ccccCchhhhcCC-----CC-------CCChhhHHHHHhhcCCCccccccccccCCCCCCCC---CCC
Q 039949           34 GRKECGDQL---ADFSACLPFVGGK-----AK-------SPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGF---KMN   95 (147)
Q Consensus        34 ~~~~C~~~~---~~L~pC~~yv~g~-----~~-------~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~---~in   95 (147)
                      ....|..-+   ..|..|..||...     ..       .-=..||+.|+.+   ++.|.|..|+.......+.   .-=
T Consensus         7 ~~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---~~~CrC~~L~~avq~q~~q~~~~~~   83 (103)
T d1s6da_           7 TESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQV   83 (103)
T ss_dssp             CSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHH
T ss_pred             ccccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHhHHHHHHH
Confidence            456687655   3689999999621     11       1337899999998   7899999997754433321   111


Q ss_pred             HHHHhhcccCCCCC
Q 039949           96 ATLALSLPSVRHAP  109 (147)
Q Consensus        96 ~~~a~~LP~~Cgv~  109 (147)
                      ...|..||..||+.
T Consensus        84 ~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          84 MSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             HHHHHhChHhcCCC
Confidence            34578999999996

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=89.68  E-value=0.046  Score=34.57  Aligned_cols=67  Identities=27%  Similarity=0.568  Sum_probs=46.7

Q ss_pred             cccCchhhhcCCCCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCCCCCCHHHHhh-cccCCCCCCC-CCCCCC
Q 039949           44 DFSACLPFVGGKAKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHGFKMNATLALS-LPSVRHAPAK-VSDCPA  117 (147)
Q Consensus        44 ~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g~~in~~~a~~-LP~~Cgv~~~-~s~C~~  117 (147)
                      +|..|.+-+.+. ..+...||.-++.+.+.+ ..|+|..+|..     ++ +|....+. |-..||-..| ..+|++
T Consensus         5 Klg~C~nvLg~~-~~~~~~CC~Ll~GL~dleAAvCLCtaika~-----~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLRAL-----GI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHHHH-----TC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCc-cCCCCCcchHHhhHHHHHHHHHHHHHHHHh-----hh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            566788887763 356789999999997753 68999998852     22 44444443 4568999774 458875

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=84.96  E-value=0.04  Score=38.00  Aligned_cols=74  Identities=19%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             CCCCchhhh--ccccCchhhhcCCC-----CCC-----C-----------hhhHHHHHhhcCCCccccccccccCCCC--
Q 039949           34 GRKECGDQL--ADFSACLPFVGGKA-----KSP-----T-----------PTCCSNITKEGSKTRKCLCLLVKDRNDP--   88 (147)
Q Consensus        34 ~~~~C~~~~--~~L~pC~~yv~g~~-----~~P-----s-----------~~CC~al~~~~~~~~~ClC~~l~~~~~~--   88 (147)
                      ....|...+  ..|..|..||....     ..+     .           ..||+.|+.+   ++.|.|..|+..+..  
T Consensus        14 ~~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~   90 (125)
T d1psya_          14 SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQI   90 (125)
T ss_dssp             SSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHH
Confidence            455687653  37999999997321     011     0           3699999998   789999988654321  


Q ss_pred             ----CCCCCC--CHHHHhhcccCCCCCC
Q 039949           89 ----RHGFKM--NATLALSLPSVRHAPA  110 (147)
Q Consensus        89 ----~~g~~i--n~~~a~~LP~~Cgv~~  110 (147)
                          ..+.-+  =..+|..||..||+..
T Consensus        91 qq~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          91 QQGQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             HHTTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhcCCcc
Confidence                111101  0467889999999965

>d1tmqb_ a.52.1.2 (B:) Trypsin/alpha-amylase inhibitor RBI {Eleusine coracana, seeds [TaxId: 4511]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Proteinase/alpha-amylase inhibitors
domain: Trypsin/alpha-amylase inhibitor RBI
species: Eleusine coracana, seeds [TaxId: 4511]

Probab=81.38  E-value=0.16  Score=34.56  Aligned_cols=38  Identities=24%  Similarity=0.538  Sum_probs=27.3

Q ss_pred             cccCchhhhc----CCCC-CCC----hhhHHHHHhhcCCCcccccccccc
Q 039949           44 DFSACLPFVG----GKAK-SPT----PTCCSNITKEGSKTRKCLCLLVKD   84 (147)
Q Consensus        44 ~L~pC~~yv~----g~~~-~Ps----~~CC~al~~~~~~~~~ClC~~l~~   84 (147)
                      .|..|.+||.    |.+. .+.    ..||+.+.++   ...|.|..|..
T Consensus        16 pL~~CR~Yv~~q~~g~g~~~~~~~~~~~CC~qL~~i---~~~CRC~ALr~   62 (117)
T d1tmqb_          16 PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRI   62 (117)
T ss_dssp             TTTTHHHHHHHHHHSCSCSSCHHHHHHHHHHHHHTS---CHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhC---CcccchHHHHH
Confidence            3777999996    3222 222    4599999998   57899988754