Citrus Sinensis ID: 039969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MYSISHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDNGKPP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccEEEEEEEEcccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEcccccccEccccEcccccccccEEccccccccccccccccccccHHHHHHHccccccccccccEEEEEEEEccccccccEEEEEcccccEEEEEEcccccccHEEEEEHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mysishtssisfpakpattfrcfaasdipagpnslrwphsssaadisirvgpdsegtavggshggvkvnakekkwsrnresyltddseplplpmtypdsspvpreeidkrlrcdpevqdCKEVVYEwtgkcrscqgsgyvsyynkrgkeiickcipclgigyvqkitaRKDIEVmedldngkpp
Flexible Loop (DISEMBL)
mysishtssisfpakPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSegtavggshggvkvnakekkwsrnresyltddseplplpmtypdsspvpREEIDkrlrcdpevqDCKEVVyewtgkcrscqgsGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEvmedldngkpp
Low Complexity Region (SEG)
MYSISHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDNGKPP
Disordered region (IsUnstruct)
******************TFRCFAA**************************************************************************************RCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIE***********
Disordered Region (DISOPRED)
**********************FAASDIPAGPNSLRWPHS*********************************************DSEPLPLPMTY****************CDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEV***L******
Disordered Region (DISEMBL)
**********SFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVME********
Disordered Region (DISPRO)
******TSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSA*************TA******GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSISHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDNGKPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q93YN0	187	Protein disulfide-isomera	yes	no	0.940	0.925	0.590	3e-53

>sp|Q93YN0|SCO2_ARATH Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2 PE=1 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 126/176 (71%), Gaps = 3/176 (1%)

Query: 5   SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
           SH   +  P  P+ + RC AA+DIP G + +R P  + +   + R    S   A GG+  
Sbjct: 12  SHRPLVFLPRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68

Query: 65  GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
           G K   +   WS++ ESYL DD + LPLPMTYPD+SPV  + ID+RL+CDP V+DC+EVV
Sbjct: 69  GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128

Query: 125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
           YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct: 129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184

Protein disulfide-isomerase involved in chloroplast development in cotyledons. Involved in the process of vesicle-derived thylakoid formation, probably at the level of the integration and folding of LHCB proteins at the initial location of integration. Acts only in germinating seeds after dormancy, during the transition from heterotrophic to autotrophic growth.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
359475374	209	PREDICTED: uncharacterized protein LOC10	0.983	0.866	0.641	1e-62
224105541	198	predicted protein [Populus trichocarpa]	0.967	0.898	0.628	1e-61
363806768	180	uncharacterized protein LOC100819362 [Gl	0.972	0.994	0.637	2e-61
255555471	213	conserved hypothetical protein [Ricinus	0.956	0.826	0.621	3e-61
356500037	183	PREDICTED: uncharacterized protein LOC10	0.972	0.978	0.650	5e-59
449497625	212	PREDICTED: protein disulfide-isomerase S	0.989	0.858	0.589	2e-57
18402160	187	protein disulfide isomerase [Arabidopsis	0.940	0.925	0.590	2e-51
449445880	115	PREDICTED: protein disulfide-isomerase S	0.608	0.973	0.876	3e-51
297830570	187	hypothetical protein ARALYDRAFT_898297 [	0.940	0.925	0.585	1e-50
357475403	388	Calmodulin-like protein [Medicago trunca	0.929	0.440	0.551	3e-46

>gi|359475374|ref|XP_003631671.1| PREDICTED: uncharacterized protein LOC100854865 [Vitis vinifera] gi|297741288|emb|CBI32419.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 149/201 (74%), Gaps = 20/201 (9%)

Query: 1   MYSISHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADIS--IRVGPD----- 53
           +YS S+ S  S P    +T RC AA D+PAGP+  RW H  + AD S  +R   D     
Sbjct: 10  LYS-SNPSIFSLPKFSISTVRCRAA-DLPAGPSFPRWLHLFTTADASAGVRSKQDLDGVG 67

Query: 54  --------SEGTA---VGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPV 102
                   ++G+A    G +  GVKVNA EK+WSRNRESYL DD + LPLPMTYPDSSPV
Sbjct: 68  VGGGVGSTADGSARRSSGNAGSGVKVNAWEKRWSRNRESYLADDDDALPLPMTYPDSSPV 127

Query: 103 PREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGY 162
             EEID+RLRCDP+V+DCKEVVYEWTGKCRSCQG+G+VSYYNKRGKE ICKCIPCLGIGY
Sbjct: 128 APEEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGTGFVSYYNKRGKETICKCIPCLGIGY 187

Query: 163 VQKITARKDIEVMEDLDNGKP 183
           VQKIT+R DIEVMEDL+NGKP
Sbjct: 188 VQKITSRNDIEVMEDLENGKP 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105541|ref|XP_002313849.1| predicted protein [Populus trichocarpa] gi|118489605|gb|ABK96604.1| unknown [Populus trichocarpa x Populus deltoides] gi|222850257|gb|EEE87804.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 146/202 (72%), Gaps = 24/202 (11%)

Query: 1   MYSISHTSSISFPAKPA----TTFRCFAASDIPAGPNSLRWPHSSSAADISI-----RVG 51
           M SIS TS +  P+KP      +FRC AA D+    +  RW   +SAAD SI     R+G
Sbjct: 1   MLSISPTS-LFLPSKPTFNRTRSFRCSAAGDL----SFPRWLQFTSAADASIGGGSIRIG 55

Query: 52  PDSEGTAVGGSH----------GGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSP 101
            + +G A                 V+VNA+EKKWSRNRESYL D+ + LPLPMTYPDS P
Sbjct: 56  QELDGAASADGERKGFGGNSGGSSVRVNAREKKWSRNRESYLADNEDALPLPMTYPDSKP 115

Query: 102 VPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIG 161
           VP EEIDKRL CDPEV+DC+EVVYEWTGKCRSCQGSG+VSYYNKRGKE+ CKC+PCLGIG
Sbjct: 116 VPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCKCVPCLGIG 175

Query: 162 YVQKITARKDIEVMEDLDNGKP 183
           YVQKITARKDI VME+LDNGKP
Sbjct: 176 YVQKITARKDIAVMEELDNGKP 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806768|ref|NP_001242534.1| uncharacterized protein LOC100819362 [Glycine max] gi|255636117|gb|ACU18402.1| unknown [Glycine max]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 142/185 (76%), Gaps = 6/185 (3%)

Query: 1   MYSISHTSSISFPAKPATTFRCFAAS-DIPAGPNSLRWPHSSSAADISIRVGPDSEGTAV 59
           M++ +  S++ FP  P ++FRC AA+ ++ AGP+  +    S A  + I   PD  G  V
Sbjct: 1   MFATNAASNLFFPGNP-SSFRCRAAAGNLSAGPSFFQ----SVAGGLRIGQFPDGAGLVV 55

Query: 60  GGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQD 119
            G  GG     + KKWSR  ESYL +D+EPLPLPMTYPDSSPV +EEIDKRL+CDP++QD
Sbjct: 56  EGRRGGGNEPIRVKKWSRKNESYLDNDTEPLPLPMTYPDSSPVSQEEIDKRLQCDPQIQD 115

Query: 120 CKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLD 179
           CKEVVYEWTGKCRSCQGSGYVSYY KRGK + CKCIPC+GIGYVQKITARKDI+VMEDL+
Sbjct: 116 CKEVVYEWTGKCRSCQGSGYVSYYGKRGKAVTCKCIPCMGIGYVQKITARKDIDVMEDLE 175

Query: 180 NGKPP 184
           NGKPP
Sbjct: 176 NGKPP 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555471|ref|XP_002518772.1| conserved hypothetical protein [Ricinus communis] gi|223542153|gb|EEF43697.1| conserved hypothetical protein [Ricinus communis]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 146/206 (70%), Gaps = 30/206 (14%)

Query: 8   SSISFPAKPA---------TTFRCFA-ASDIPAGPNSLRW-PHSSSAADI-SIRVGPDSE 55
           +S+ FP+KP+         T+ RCFA A D+   P   RW  H +SAAD  SIR+G +S+
Sbjct: 7   NSLFFPSKPSHLLSLPSITTSHRCFASAGDLRHIPTFPRWWFHFTSAADTGSIRIGQESD 66

Query: 56  GTAVGGSHGG------------------VKVNAKEKKWSRNRESYLTDDSEPLPLPMTYP 97
           G                           ++VNAKEKKWSRNRESYL D+ + LPLPMTYP
Sbjct: 67  GATSSPVADSSSSAGPQRRGLGGSGSSSIRVNAKEKKWSRNRESYLVDNEDALPLPMTYP 126

Query: 98  DSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPC 157
           DS PV  EEIDKRLRCDPE+QDC+EVVYEWTGKCRSCQGSGYVSY+NKRGKE ICKC+PC
Sbjct: 127 DSKPVSPEEIDKRLRCDPEIQDCREVVYEWTGKCRSCQGSGYVSYFNKRGKETICKCVPC 186

Query: 158 LGIGYVQKITARKDIEVMEDLDNGKP 183
           LGIGYVQKITARKDI VMEDLDNGKP
Sbjct: 187 LGIGYVQKITARKDIGVMEDLDNGKP 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500037|ref|XP_003518841.1| PREDICTED: uncharacterized protein LOC100795440 [Glycine max]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 145/186 (77%), Gaps = 7/186 (3%)

Query: 1   MYSISHTSSISFPAKPATTFRCFAAS-DIPAGPNSLRWPHSSSAADISIRVGPDSEGTAV 59
           M++ + TS++ FP  P ++FRC AA+ D+ AGP+ ++    S A  + I   PD  G AV
Sbjct: 3   MFATNATSNLFFPCSP-SSFRCRAAAGDLSAGPSFIQ----SVAGGLRIGQFPDGAGLAV 57

Query: 60  GGSHGGVKVN-AKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQ 118
            G  GG      + KKWSR  ESYL +D+EPLPLPMTYPDSSPV +EEIDKRL+CDP++Q
Sbjct: 58  EGRRGGGGNEPIRVKKWSRKNESYLDNDAEPLPLPMTYPDSSPVSQEEIDKRLQCDPQIQ 117

Query: 119 DCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDL 178
           DCKEVVYEWTGKCRSCQGSGYVSYY KRGK + CKCIPC+GIGYVQKITARKDI+VMEDL
Sbjct: 118 DCKEVVYEWTGKCRSCQGSGYVSYYGKRGKPVTCKCIPCMGIGYVQKITARKDIDVMEDL 177

Query: 179 DNGKPP 184
           +NGKPP
Sbjct: 178 ENGKPP 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497625|ref|XP_004160454.1| PREDICTED: protein disulfide-isomerase SCO2-like isoform 2 [Cucumis sativus]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 146/212 (68%), Gaps = 30/212 (14%)

Query: 1   MYSISHTSSISFPAKPAT------------TFRCFAASDIPAGPNS-----LRWPH-SSS 42
           M++I + SS  FP+ P T            +FR   A+   A P+        +P  S++
Sbjct: 1   MFAI-NPSSFFFPSNPTTATARQHSISPPSSFRLSLAATGDASPDPSISRLFNFPSLSAT 59

Query: 43  AADISIRVGPDSEGTA----------VGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPL 92
            A    R+G D +  A              +G VKVNA EKKWSR+RESYL DDS+ LPL
Sbjct: 60  DATGGFRLGQDYDAGASSPVIDGPGRFARGNGTVKVNAMEKKWSRDRESYLVDDSDVLPL 119

Query: 93  PMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIIC 152
           PMTYPDSSPV  +EID+RLRCDP+V+DCKEVVYEWTGKCRSCQGSGYVSYYNKRG+EI C
Sbjct: 120 PMTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREITC 179

Query: 153 KCIPCLGIGYVQKITARKDIEVMEDLD-NGKP 183
           KCIPCLGIGYVQKITARKDIE+MEDLD NGKP
Sbjct: 180 KCIPCLGIGYVQKITARKDIELMEDLDNNGKP 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402160|ref|NP_566627.1| protein disulfide isomerase [Arabidopsis thaliana] gi|75163632|sp|Q93YN0.1|SCO2_ARATH RecName: Full=Protein disulfide-isomerase SCO2; AltName: Full=Protein SNOWY COTYLEDON 2; Flags: Precursor gi|16649111|gb|AAL24407.1| Unknown protein [Arabidopsis thaliana] gi|20148555|gb|AAM10168.1| unknown protein [Arabidopsis thaliana] gi|166850620|gb|ABY91282.1| snowy cotyledon 2 [Arabidopsis thaliana] gi|332642689|gb|AEE76210.1| protein disulfide isomerase [Arabidopsis thaliana]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 126/176 (71%), Gaps = 3/176 (1%)

Query: 5   SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
           SH   +  P  P+ + RC AA+DIP G + +R P  + +   + R    S   A GG+  
Sbjct: 12  SHRPLVFLPRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68

Query: 65  GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
           G K   +   WS++ ESYL DD + LPLPMTYPD+SPV  + ID+RL+CDP V+DC+EVV
Sbjct: 69  GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128

Query: 125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
           YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct: 129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445880|ref|XP_004140700.1| PREDICTED: protein disulfide-isomerase SCO2-like isoform 2 [Cucumis sativus]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 107/113 (94%), Gaps = 1/113 (0%)

Query: 72  EKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVVYEWTGKC 131
           EKKWSR+RESYL DDS+ LPLPMTYPDSSPV  +EID+RLRCDP+V+DCKEVVYEWTGKC
Sbjct: 2   EKKWSRDRESYLVDDSDVLPLPMTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKC 61

Query: 132 RSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLD-NGKP 183
           RSCQGSGYVSYYNKRG+EI CKCIPCLGIGYVQKITARKDIE+MEDLD NGKP
Sbjct: 62  RSCQGSGYVSYYNKRGREITCKCIPCLGIGYVQKITARKDIELMEDLDNNGKP 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830570|ref|XP_002883167.1| hypothetical protein ARALYDRAFT_898297 [Arabidopsis lyrata subsp. lyrata] gi|297329007|gb|EFH59426.1| hypothetical protein ARALYDRAFT_898297 [Arabidopsis lyrata subsp. lyrata]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 125/176 (71%), Gaps = 3/176 (1%)

Query: 5   SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
           SH   +     P+ + RC AA+DIP G + +R P  + +   + R    S   A GG+  
Sbjct: 12  SHRPLVFLHRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68

Query: 65  GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
           G K   +   WS++ ESYL DD + LPLPMTYPD+SPV  + ID+RL+CDP V+DC+EVV
Sbjct: 69  GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128

Query: 125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
           YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct: 129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475403|ref|XP_003607987.1| Calmodulin-like protein [Medicago truncatula] gi|355509042|gb|AES90184.1| Calmodulin-like protein [Medicago truncatula]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 131/196 (66%), Gaps = 25/196 (12%)

Query: 4   ISHTSSISFPAKPATTFRCFAASDIPAGPNSL-RWPHSS-SAADISIRV-GPDSEGTAV- 59
           +S T++IS        FR  A++     P S  R  HSS S    S R+   ++ G AV 
Sbjct: 2   LSTTNAISL------IFRSRASA---GDPTSFPRLFHSSLSLPTTSGRLPAVETGGAAVR 52

Query: 60  -GGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQ 118
             G +  +KV AKE+KWSRNRE Y+ D+ EPLPLPMTYPDSSPV  +EID+RL+CDP+++
Sbjct: 53  RAGGNEWMKVKAKERKWSRNREGYMFDNGEPLPLPMTYPDSSPVSSQEIDQRLQCDPKLE 112

Query: 119 DCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLG-----------IGYVQKIT 167
           DCKEVVYEWTGKCRSCQGSGYVSYYNKRGKE+  +     G             YVQKIT
Sbjct: 113 DCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEVTWQMHSLYGNCLMGWSGGRDFRYVQKIT 172

Query: 168 ARKDIEVMEDLDNGKP 183
           ARKDI++MEDL NGKP
Sbjct: 173 ARKDIDLMEDLGNGKP 188

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2094093	187	SCO2 "SNOWY COTYLEDON 2" [Arab	0.940	0.925	0.590	4.9e-53

TAIR|locus:2094093 SCO2 "SNOWY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 104/176 (59%), Positives = 126/176 (71%)

Query:     5 SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
             SH   +  P  P+ + RC AA+DIP G + +R P  + +   + R    S   A GG+  
Sbjct:    12 SHRPLVFLPRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68

Query:    65 GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
             G K   +   WS++ ESYL DD + LPLPMTYPD+SPV  + ID+RL+CDP V+DC+EVV
Sbjct:    69 GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128

Query:   125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
             YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct:   129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 23  0.50    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Total cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Start:  Mon May 20 16:59:01 2013   End:  Mon May 20 16:59:02 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YN0	SCO2_ARATH	5, ., 3, ., 4, ., 1	0.5909	0.9402	0.9251	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	93.14
PLN03165	111	chaperone protein dnaJ-related; Provisional	91.04
PRK14298	377	chaperone protein DnaJ; Provisional	89.27
PRK14282	369	chaperone protein DnaJ; Provisional	89.17
PRK14288	369	chaperone protein DnaJ; Provisional	89.07
PRK14300	372	chaperone protein DnaJ; Provisional	88.92
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	88.85
PRK14278	378	chaperone protein DnaJ; Provisional	88.45
PRK14280	376	chaperone protein DnaJ; Provisional	88.01
PRK14297	380	chaperone protein DnaJ; Provisional	87.9
PRK14279	392	chaperone protein DnaJ; Provisional	87.75
PRK14287	371	chaperone protein DnaJ; Provisional	87.64
PRK14301	373	chaperone protein DnaJ; Provisional	86.72
PRK14276	380	chaperone protein DnaJ; Provisional	86.6
PRK14292	371	chaperone protein DnaJ; Provisional	86.43
PRK14277	386	chaperone protein DnaJ; Provisional	86.43
PRK14296	372	chaperone protein DnaJ; Provisional	86.3
PRK14286	372	chaperone protein DnaJ; Provisional	85.65
PRK14285	365	chaperone protein DnaJ; Provisional	85.53
PRK14289	386	chaperone protein DnaJ; Provisional	85.45
PRK14294	366	chaperone protein DnaJ; Provisional	85.35
PRK14281	397	chaperone protein DnaJ; Provisional	85.28
PRK14284	391	chaperone protein DnaJ; Provisional	84.96
PRK14293	374	chaperone protein DnaJ; Provisional	84.85
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	84.81
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	84.36
PRK14291	382	chaperone protein DnaJ; Provisional	84.26
PRK14283	378	chaperone protein DnaJ; Provisional	83.99
PRK14297	380	chaperone protein DnaJ; Provisional	83.2
PRK14295	389	chaperone protein DnaJ; Provisional	82.86
PRK10767	371	chaperone protein DnaJ; Provisional	82.58
PTZ00037	421	DnaJ_C chaperone protein; Provisional	82.39
PRK14287	371	chaperone protein DnaJ; Provisional	82.36
PRK14295	389	chaperone protein DnaJ; Provisional	81.87
PRK14290	365	chaperone protein DnaJ; Provisional	81.46
PRK14298	377	chaperone protein DnaJ; Provisional	81.37
PRK14276	380	chaperone protein DnaJ; Provisional	81.28
PRK14280	376	chaperone protein DnaJ; Provisional	81.03
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	80.95
PRK14278	378	chaperone protein DnaJ; Provisional	80.92
PRK14284	391	chaperone protein DnaJ; Provisional	80.89
PRK14291	382	chaperone protein DnaJ; Provisional	80.7
PRK10767	371	chaperone protein DnaJ; Provisional	80.37

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=93.14  E-value=0.11  Score=35.64  Aligned_cols=35  Identities=29%  Similarity=0.578  Sum_probs=25.4

Q ss_pred             eecccccceeEEEeecC---CcEEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKR---GKEIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~kr---GKe~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|+|...+..   .-.....|..|.|.|++-
T Consensus        17 ~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen   17 TCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             E-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            79999999999877642   226778899999999884

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=91.04  E-value=0.21  Score=38.92  Aligned_cols=34  Identities=41%  Similarity=0.772  Sum_probs=22.2

Q ss_pred             eecccccceeEEEeecCCcEEeEeeeeccceeeE
Q 039969          130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYV  163 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYV  163 (184)
                      +|..|+|+|+|..-..-+..+...|..|.|.|.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~   87 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL   87 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee
Confidence            7888888888874331224556677777776643

>PRK14298 chaperone protein DnaJ; Provisional

Probab=89.27  E-value=0.31  Score=43.18  Aligned_cols=19  Identities=42%  Similarity=0.739  Sum_probs=12.8

Q ss_pred             CcEEeEeeeeccceeeEEE
Q 039969          147 GKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       147 GKe~ickCi~ClGiGYVrk  165 (184)
                      |+.+..+|..|.|-|+|++
T Consensus       194 G~~~~~~C~~C~G~g~v~~  212 (377)
T PRK14298        194 GQVIESPCPVCSGTGKVRK  212 (377)
T ss_pred             CcccCCCCCCCCCccEEEE
Confidence            3334456888888888864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=89.17  E-value=0.31  Score=42.79  Aligned_cols=16  Identities=25%  Similarity=0.430  Sum_probs=11.6

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      ..-.|-.|.|-|+|++
T Consensus       208 ~~~~C~~C~G~g~v~~  223 (369)
T PRK14282        208 PGEYCHECGGSGRIRR  223 (369)
T ss_pred             CCCCCCCCCCceeEEE
Confidence            3456888888888866

>PRK14288 chaperone protein DnaJ; Provisional

Probab=89.07  E-value=0.37  Score=42.46  Aligned_cols=37  Identities=35%  Similarity=0.735  Sum_probs=21.6

Q ss_pred             ceecccccceeEEEee-------------cCCcEEeEeeeeccceeeEEE
Q 039969          129 GKCRSCQGSGYVSYYN-------------KRGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~-------------krGKe~ickCi~ClGiGYVrk  165 (184)
                      ..|..|.|+|.|..-.             -+|+-+.-+|-.|.|.|+|++
T Consensus       157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  206 (369)
T PRK14288        157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILK  206 (369)
T ss_pred             cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEE
Confidence            3466666666554211             223334456888888888865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=88.92  E-value=0.41  Score=42.17  Aligned_cols=16  Identities=38%  Similarity=0.731  Sum_probs=11.1

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +.-.|..|.|-|||.+
T Consensus       197 ~~~~C~~C~G~g~v~~  212 (372)
T PRK14300        197 IKNPCKKCHGMGRYHK  212 (372)
T ss_pred             eCCCCCCCCCceEEEe
Confidence            3455788888888754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=88.85  E-value=0.25  Score=42.71  Aligned_cols=15  Identities=33%  Similarity=0.642  Sum_probs=9.8

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-+|-.|.|-|+|++
T Consensus       200 ~~~C~~C~G~g~v~~  214 (354)
T TIGR02349       200 KEPCSTCKGKGRVKE  214 (354)
T ss_pred             CCCCCCCCCCcEecc
Confidence            345777777777754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14278 chaperone protein DnaJ; Provisional

Probab=88.45  E-value=0.35  Score=42.75  Aligned_cols=16  Identities=38%  Similarity=0.600  Sum_probs=11.3

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +.-+|..|.|-|+|++
T Consensus       195 ~~~~C~~C~G~g~v~~  210 (378)
T PRK14278        195 IPDPCHECAGDGRVRA  210 (378)
T ss_pred             eCCCCCCCCCceeEec
Confidence            4456888888888854

>PRK14280 chaperone protein DnaJ; Provisional

Probab=88.01  E-value=0.54  Score=41.47  Aligned_cols=16  Identities=50%  Similarity=0.787  Sum_probs=11.2

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +.-.|-.|.|-|+|++
T Consensus       199 ~~~~C~~C~G~g~v~~  214 (376)
T PRK14280        199 IKEKCPTCHGKGKVRK  214 (376)
T ss_pred             ecCCCCCCCCceEEEE
Confidence            3455788888888854

>PRK14297 chaperone protein DnaJ; Provisional

Probab=87.90  E-value=0.5  Score=41.65  Aligned_cols=15  Identities=40%  Similarity=0.629  Sum_probs=10.2

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-+|..|.|-|+|++
T Consensus       205 ~~~C~~C~G~g~v~~  219 (380)
T PRK14297        205 EDPCNKCHGKGKVRK  219 (380)
T ss_pred             CCCCCCCCCCeEEEe
Confidence            345777777777744

>PRK14279 chaperone protein DnaJ; Provisional

Probab=87.75  E-value=0.47  Score=42.26  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=10.3

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-+|..|.|-|+|++
T Consensus       226 ~~~C~~C~G~g~v~~  240 (392)
T PRK14279        226 EDPCEECKGTGVTTR  240 (392)
T ss_pred             CCcCCCCCCCeEEEE
Confidence            445777777778754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=87.64  E-value=0.55  Score=41.48  Aligned_cols=35  Identities=40%  Similarity=0.717  Sum_probs=21.4

Q ss_pred             eecccccceeEEEee-----------------cCCcEEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYN-----------------KRGKEIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~-----------------krGKe~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|.|....                 .+|+-+.-.|-.|.|-|+|+
T Consensus       157 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK14287        157 TCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR  208 (371)
T ss_pred             ccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence            477777777664322                 23333445677788888875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=86.72  E-value=0.41  Score=42.27  Aligned_cols=36  Identities=42%  Similarity=0.785  Sum_probs=19.9

Q ss_pred             eecccccceeEEEee-------------cCCcEEeEeeeeccceeeEEE
Q 039969          130 KCRSCQGSGYVSYYN-------------KRGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~-------------krGKe~ickCi~ClGiGYVrk  165 (184)
                      .|..|+|+|.|..-.             -+|+-+.-.|..|.|-|+|++
T Consensus       163 ~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  211 (373)
T PRK14301        163 TCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQ  211 (373)
T ss_pred             ccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceecc
Confidence            477777777665221             122223345677777777743

>PRK14276 chaperone protein DnaJ; Provisional

Probab=86.60  E-value=0.65  Score=41.04  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=12.2

Q ss_pred             cEEeEeeeeccceeeEEE
Q 039969          148 KEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       148 Ke~ickCi~ClGiGYVrk  165 (184)
                      +.+.-+|-.|.|-|||++
T Consensus       200 ~~~~~~C~~C~G~g~~~~  217 (380)
T PRK14276        200 KEIKEPCQTCHGTGHEKQ  217 (380)
T ss_pred             ccccCCCCCCCCceEEEE
Confidence            334456888888888854

>PRK14292 chaperone protein DnaJ; Provisional

Probab=86.43  E-value=0.5  Score=41.34  Aligned_cols=16  Identities=38%  Similarity=0.596  Sum_probs=10.8

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +...|..|.|-|||.+
T Consensus       196 ~~~~C~~C~G~g~v~~  211 (371)
T PRK14292        196 ITDPCTVCRGRGRTLK  211 (371)
T ss_pred             cCCCCCCCCCceEEee
Confidence            4456777777777744

>PRK14277 chaperone protein DnaJ; Provisional

Probab=86.43  E-value=0.59  Score=41.37  Aligned_cols=16  Identities=31%  Similarity=0.685  Sum_probs=10.9

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +.-+|..|.|-|+|++
T Consensus       211 ~~~~C~~C~G~g~v~~  226 (386)
T PRK14277        211 ITDPCNKCGGTGRIRR  226 (386)
T ss_pred             ccCCCCCCCCCcEEee
Confidence            3446888888888744

>PRK14296 chaperone protein DnaJ; Provisional

Probab=86.30  E-value=0.74  Score=40.75  Aligned_cols=37  Identities=35%  Similarity=0.624  Sum_probs=21.7

Q ss_pred             ceecccccceeEEEeec-----------------CCcEEeEeeeeccceeeEEE
Q 039969          129 GKCRSCQGSGYVSYYNK-----------------RGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~k-----------------rGKe~ickCi~ClGiGYVrk  165 (184)
                      .+|..|.|+|.|..-+.                 +|+-+.-+|-.|.|-|+|++
T Consensus       167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  220 (372)
T PRK14296        167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLE  220 (372)
T ss_pred             ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEE
Confidence            34666777776653322                 23334456777778787754

>PRK14286 chaperone protein DnaJ; Provisional

Probab=85.65  E-value=0.58  Score=41.31  Aligned_cols=15  Identities=33%  Similarity=0.603  Sum_probs=10.4

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-.|-.|.|-|+|++
T Consensus       203 ~~~C~~C~G~g~~~~  217 (372)
T PRK14286        203 SNPCKTCGGQGLQEK  217 (372)
T ss_pred             cccCCCCCCCcEEec
Confidence            345777788888764

>PRK14285 chaperone protein DnaJ; Provisional

Probab=85.53  E-value=0.55  Score=41.37  Aligned_cols=16  Identities=38%  Similarity=0.723  Sum_probs=10.9

Q ss_pred             EeEeeeeccceeeEEE
Q 039969          150 IICKCIPCLGIGYVQK  165 (184)
Q Consensus       150 ~ickCi~ClGiGYVrk  165 (184)
                      +...|..|.|-|+|++
T Consensus       198 ~~~~C~~C~G~g~v~~  213 (365)
T PRK14285        198 ISNPCKSCKGKGSLKK  213 (365)
T ss_pred             cCCCCCCCCCCCEEec
Confidence            3446777788888754

>PRK14289 chaperone protein DnaJ; Provisional

Probab=85.45  E-value=0.71  Score=40.69  Aligned_cols=15  Identities=40%  Similarity=0.547  Sum_probs=10.4

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-.|..|.|-|+|++
T Consensus       211 ~~~C~~C~G~g~v~~  225 (386)
T PRK14289        211 KKKCKKCGGEGIVYG  225 (386)
T ss_pred             CcCCCCCCCCcEEee
Confidence            345777777788754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=85.35  E-value=0.5  Score=41.45  Aligned_cols=15  Identities=33%  Similarity=0.764  Sum_probs=11.5

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-.|..|.|-|+|++
T Consensus       197 ~~~C~~C~G~g~v~~  211 (366)
T PRK14294        197 VSPCKTCHGQGRVRV  211 (366)
T ss_pred             CcCCCCCCCceEeec
Confidence            456888888888854

>PRK14281 chaperone protein DnaJ; Provisional

Probab=85.28  E-value=0.55  Score=41.83  Aligned_cols=36  Identities=33%  Similarity=0.698  Sum_probs=22.3

Q ss_pred             eecccccceeEEEee-----------------cCCcEEeEeeeeccceeeEEE
Q 039969          130 KCRSCQGSGYVSYYN-----------------KRGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~-----------------krGKe~ickCi~ClGiGYVrk  165 (184)
                      .|..|.|+|.|..-.                 -+|+.+.-.|-.|.|-|+|++
T Consensus       181 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  233 (397)
T PRK14281        181 TCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQG  233 (397)
T ss_pred             cCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEec
Confidence            567777777664322                 233444556888888888854

>PRK14284 chaperone protein DnaJ; Provisional

Probab=84.96  E-value=0.76  Score=40.77  Aligned_cols=14  Identities=29%  Similarity=0.667  Sum_probs=10.0

Q ss_pred             EeeeeccceeeEEE
Q 039969          152 CKCIPCLGIGYVQK  165 (184)
Q Consensus       152 ckCi~ClGiGYVrk  165 (184)
                      -.|..|.|-|+|++
T Consensus       212 ~~C~~C~G~g~v~~  225 (391)
T PRK14284        212 DPCSVCRGQGRIKD  225 (391)
T ss_pred             CcCCCCCCcceecc
Confidence            45778888888843

>PRK14293 chaperone protein DnaJ; Provisional

Probab=84.85  E-value=0.58  Score=41.15  Aligned_cols=13  Identities=38%  Similarity=0.958  Sum_probs=8.5

Q ss_pred             eecccccceeEEE
Q 039969          130 KCRSCQGSGYVSY  142 (184)
Q Consensus       130 KCrsCqGtG~Vsy  142 (184)
                      +|..|.|+|.|..
T Consensus       162 ~C~~C~G~G~~~~  174 (374)
T PRK14293        162 TCSTCGGAGQVRR  174 (374)
T ss_pred             eCCCCCCcceEEE
Confidence            5677777776653

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=84.81  E-value=0.66  Score=31.75  Aligned_cols=32  Identities=34%  Similarity=0.718  Sum_probs=22.3

Q ss_pred             ecccccceeEEEeecCCcEEeEeeeeccceeeEEEEee
Q 039969          131 CRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITA  168 (184)
Q Consensus       131 CrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~  168 (184)
                      |..|.|+|.-     .++. +-+|..|.|-|+|..+..
T Consensus         1 C~~C~G~G~~-----~~~~-~~~C~~C~G~G~~~~~~~   32 (66)
T PF00684_consen    1 CPKCNGTGAK-----PGKK-PKTCPQCNGSGQVTRRQQ   32 (66)
T ss_dssp             -CCCTTTSB------STTT--EE-TTSSSSSEEEEEEE
T ss_pred             CCcCCCcccC-----CCCC-CcCCcCCCCeeEEEEEEe
Confidence            7899999964     2222 348999999999998774

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=84.36  E-value=0.54  Score=39.32  Aligned_cols=32  Identities=28%  Similarity=0.724  Sum_probs=24.8

Q ss_pred             eceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969          128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI  166 (184)
Q Consensus       128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki  166 (184)
                      ...|..|.|+|++---.       -.|-.|.|-|||++-
T Consensus        99 ~~~C~~C~G~G~~i~~~-------~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQ-------RECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCC-------CCCCCCCCccEEeee
Confidence            78899999999863110       469999999999753

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14291 chaperone protein DnaJ; Provisional

Probab=84.26  E-value=0.87  Score=40.29  Aligned_cols=14  Identities=43%  Similarity=0.702  Sum_probs=10.9

Q ss_pred             EeeeeccceeeEEE
Q 039969          152 CKCIPCLGIGYVQK  165 (184)
Q Consensus       152 ckCi~ClGiGYVrk  165 (184)
                      -.|..|.|-|||++
T Consensus       209 ~~C~~C~G~g~v~~  222 (382)
T PRK14291        209 EPCSKCNGRGLVIK  222 (382)
T ss_pred             cCCCCCCCCceEEe
Confidence            46888888888865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=83.99  E-value=0.68  Score=40.79  Aligned_cols=36  Identities=33%  Similarity=0.708  Sum_probs=20.1

Q ss_pred             eecccccceeEEEeec-----------------CCcEEeEeeeeccceeeEEE
Q 039969          130 KCRSCQGSGYVSYYNK-----------------RGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~k-----------------rGKe~ickCi~ClGiGYVrk  165 (184)
                      +|..|.|+|.|...+.                 +|+-..-.|..|.|-|+|+.
T Consensus       165 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  217 (378)
T PRK14283        165 TCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRE  217 (378)
T ss_pred             cCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeecc
Confidence            4777777777664442                 22223345666666666644

>PRK14297 chaperone protein DnaJ; Provisional

Probab=83.20  E-value=0.81  Score=40.36  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             ceecccccceeEEEeecCC--c-EEeEeeeeccceeeEE
Q 039969          129 GKCRSCQGSGYVSYYNKRG--K-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~krG--K-e~ickCi~ClGiGYVr  164 (184)
                      ..|..|.|+|.|...+.-+  . .....|..|.|-|++.
T Consensus       166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            3466666777665443221  1 3456777777777764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=82.86  E-value=1.1  Score=39.98  Aligned_cols=14  Identities=29%  Similarity=0.700  Sum_probs=9.3

Q ss_pred             EeeeeccceeeEEE
Q 039969          152 CKCIPCLGIGYVQK  165 (184)
Q Consensus       152 ckCi~ClGiGYVrk  165 (184)
                      -.|..|.|-|+|++
T Consensus       220 ~~C~~C~G~g~~~~  233 (389)
T PRK14295        220 DPCLVCKGSGRAKS  233 (389)
T ss_pred             cCCCCCCCCceEee
Confidence            45777777777754

>PRK10767 chaperone protein DnaJ; Provisional

Probab=82.58  E-value=1.1  Score=39.24  Aligned_cols=15  Identities=40%  Similarity=0.673  Sum_probs=9.7

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-.|-.|.|-|+|++
T Consensus       195 ~~~C~~C~G~g~v~~  209 (371)
T PRK10767        195 KDPCKKCHGQGRVEK  209 (371)
T ss_pred             CCCCCCCCCCceEee
Confidence            345777777777754

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=82.39  E-value=1.2  Score=40.64  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=10.1

Q ss_pred             EeeeeccceeeEEE
Q 039969          152 CKCIPCLGIGYVQK  165 (184)
Q Consensus       152 ckCi~ClGiGYVrk  165 (184)
                      .+|-.|.|-|+|++
T Consensus       209 ~~C~~C~G~g~v~~  222 (421)
T PTZ00037        209 KKCKNCSGKGVKKT  222 (421)
T ss_pred             ccCCcCCCcceeee
Confidence            45777888888754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=82.36  E-value=1.1  Score=39.69  Aligned_cols=40  Identities=28%  Similarity=0.505  Sum_probs=29.1

Q ss_pred             cceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969          121 KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI  166 (184)
Q Consensus       121 k~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki  166 (184)
                      +++-|+-...|..|.|+|.-.     ++ .+.+|-.|.|-|+|...
T Consensus       131 ~~i~~~r~~~C~~C~G~G~~~-----~~-~~~~C~~C~G~G~~~~~  170 (371)
T PRK14287        131 TEIEIPREETCGTCHGSGAKP-----GT-KPETCSHCGGSGQLNVE  170 (371)
T ss_pred             EEEEEeeeccCCCCCCcccCC-----CC-CCcccCCCCCEEEEEEE
Confidence            347788889999999999642     22 23568888888877544

>PRK14295 chaperone protein DnaJ; Provisional

Probab=81.87  E-value=1.6  Score=38.97  Aligned_cols=35  Identities=31%  Similarity=0.654  Sum_probs=24.5

Q ss_pred             ceecccccceeEEEeecCCcEEeEeeeeccceeeEE
Q 039969          129 GKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQ  164 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVr  164 (184)
                      ..|..|.|+|.|..-. .+-.....|..|.|-|++.
T Consensus       184 ~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~  218 (389)
T PRK14295        184 RVCPTCSGTGQVSRNS-GGFSLSEPCPDCKGRGLIA  218 (389)
T ss_pred             cCCCCCCCEeEEEEEe-cceEEEEecCCCcceeEEe
Confidence            4577888888776433 2334667899999999874

>PRK14290 chaperone protein DnaJ; Provisional

Probab=81.46  E-value=1.4  Score=38.73  Aligned_cols=15  Identities=40%  Similarity=0.554  Sum_probs=11.1

Q ss_pred             eEeeeeccceeeEEE
Q 039969          151 ICKCIPCLGIGYVQK  165 (184)
Q Consensus       151 ickCi~ClGiGYVrk  165 (184)
                      .-.|..|.|-|||++
T Consensus       205 ~~~C~~C~G~g~v~~  219 (365)
T PRK14290        205 EEKCPRCNGTGTVVV  219 (365)
T ss_pred             cCCCCCCCCceeEEE
Confidence            346888888888865

>PRK14298 chaperone protein DnaJ; Provisional

Probab=81.37  E-value=1.1  Score=39.73  Aligned_cols=34  Identities=32%  Similarity=0.746  Sum_probs=18.4

Q ss_pred             eecccccceeEEEeecC--Cc-EEeEeeeeccceeeE
Q 039969          130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYV  163 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYV  163 (184)
                      +|..|.|+|.|..-+.-  |. .....|..|.|.|++
T Consensus       160 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  196 (377)
T PRK14298        160 RCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV  196 (377)
T ss_pred             cCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence            46666666655433221  11 345567777777765

>PRK14276 chaperone protein DnaJ; Provisional

Probab=81.28  E-value=1.1  Score=39.58  Aligned_cols=35  Identities=29%  Similarity=0.608  Sum_probs=17.1

Q ss_pred             eecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|.|..-+.-  |- .....|..|.|-|++.
T Consensus       165 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  202 (380)
T PRK14276        165 TCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI  202 (380)
T ss_pred             cCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence            35555555555432211  11 2244666666666664

>PRK14280 chaperone protein DnaJ; Provisional

Probab=81.03  E-value=1.2  Score=39.26  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             eecccccceeEEEeecCC--c-EEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKRG--K-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krG--K-e~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|.|...+..+  . .....|..|.|-|++.
T Consensus       162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (376)
T PRK14280        162 TCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI  199 (376)
T ss_pred             cCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence            477777777765444322  1 2455788888888774

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=80.95  E-value=1  Score=41.38  Aligned_cols=17  Identities=41%  Similarity=0.573  Sum_probs=13.3

Q ss_pred             EeEeeeeccceeeEEEE
Q 039969          150 IICKCIPCLGIGYVQKI  166 (184)
Q Consensus       150 ~ickCi~ClGiGYVrki  166 (184)
                      +--+|-.|.|-|||++-
T Consensus       196 i~~pC~~C~G~G~v~~~  212 (371)
T COG0484         196 IKDPCGKCKGKGRVKKK  212 (371)
T ss_pred             CCCCCCCCCCCCeEeee
Confidence            34589999999998753

>PRK14278 chaperone protein DnaJ; Provisional

Probab=80.92  E-value=1.5  Score=38.94  Aligned_cols=35  Identities=31%  Similarity=0.683  Sum_probs=18.4

Q ss_pred             eecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr  164 (184)
                      +|..|.|+|.|.....-  |. .....|..|.|.|++.
T Consensus       158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  195 (378)
T PRK14278        158 TCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI  195 (378)
T ss_pred             ecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence            46666666655443321  11 2344677777777653

>PRK14284 chaperone protein DnaJ; Provisional

Probab=80.89  E-value=1.4  Score=39.16  Aligned_cols=32  Identities=38%  Similarity=0.709  Sum_probs=19.8

Q ss_pred             eecccccceeEEEeecCCc-EEeEeeeeccceeeE
Q 039969          130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYV  163 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYV  163 (184)
                      .|..|.|+|.|..-.  |- .....|..|.|-|++
T Consensus       177 ~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~  209 (391)
T PRK14284        177 VCDRCKGSGQVVQSR--GFFSMASTCPECGGEGRV  209 (391)
T ss_pred             ecCccCCeeEEEEEe--ceEEEEEECCCCCCCCcc
Confidence            466667777665332  32 345677777777765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=80.70  E-value=1.4  Score=39.03  Aligned_cols=33  Identities=33%  Similarity=0.622  Sum_probs=23.8

Q ss_pred             ceecccccceeEEEeecCCc-EEeEeeeeccceeeE
Q 039969          129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYV  163 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYV  163 (184)
                      ..|..|+|+|.|....  |- .....|..|.|-|++
T Consensus       174 ~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        174 KVCPTCGGSGEIYQRG--GFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             ccCCCCCCceEEEEec--ceEEEEecCCCCCCceEE
Confidence            3588888888876542  33 456789999999965

>PRK10767 chaperone protein DnaJ; Provisional

Probab=80.37  E-value=1.2  Score=39.00  Aligned_cols=33  Identities=30%  Similarity=0.708  Sum_probs=25.0

Q ss_pred             eecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|.|..-+  |- .....|..|.|-|++.
T Consensus       161 ~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~  194 (371)
T PRK10767        161 TCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKII  194 (371)
T ss_pred             cCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeEC
Confidence            688888888876443  33 4667899999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.23
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	91.67
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	90.69
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	88.77
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	87.93
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	87.44
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	85.55
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	84.75

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.23  E-value=0.0026  Score=42.42  Aligned_cols=45  Identities=22%  Similarity=0.453  Sum_probs=37.3

Q ss_pred             eceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEeecCChhhhhhccCC
Q 039969          128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDNG  181 (184)
Q Consensus       128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R~d~d~me~ldng  181 (184)
                      ...|..|.|+|.+.-         -+|-.|.|-|+|++..-..=.++|++..|.
T Consensus         9 ~~~C~~C~GsG~~i~---------~~C~~C~G~G~v~~~~G~~~~~~~~~~~~~   53 (53)
T 3lcz_A            9 ETTCPNCNGSGREEP---------EPCPKCLGKGVILTAQGSTLLHFIKKHIHE   53 (53)
T ss_dssp             EEECTTTTTSCEETT---------EECTTTTTSSEEECHHHHHHHHHHHHHTTC
T ss_pred             eccCcCCcccccCCC---------CcCCCCCCcEEEEEEeCchHHHHHHHHhcC
Confidence            457999999998752         689999999999988777777888877763

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=91.67  E-value=0.029  Score=37.34  Aligned_cols=41  Identities=17%  Similarity=0.486  Sum_probs=32.0

Q ss_pred             eceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEeecCChhhhhh
Q 039969          128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMED  177 (184)
Q Consensus       128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R~d~d~me~  177 (184)
                      ...|..|+|+|.+.      +   -.|..|.|-|+|++..-|.-.++|..
T Consensus         9 ~~~C~~C~GsG~~~------~---~~C~~C~G~G~v~~~qG~~~~g~~~~   49 (53)
T 2bx9_A            9 EVACPKCERAGEIE------G---TPCPACSGKGVILTAQGYTLLDFIQK   49 (53)
T ss_dssp             EEECTTTTTSSEET------T---EECTTTTTSSEEECHHHHHHHHHHHH
T ss_pred             cccCCCCcceeccC------C---CCCccCCCCccEEEEecccHHHHHHH
Confidence            45799999999984      1   47999999999998665666666654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=90.69  E-value=0.092  Score=34.83  Aligned_cols=12  Identities=42%  Similarity=0.872  Sum_probs=6.6

Q ss_pred             eeeeccceeeEE
Q 039969          153 KCIPCLGIGYVQ  164 (184)
Q Consensus       153 kCi~ClGiGYVr  164 (184)
                      .|-.|.|-|+|+
T Consensus        66 ~C~~C~G~G~~~   77 (79)
T 1exk_A           66 PCNKCHGHGRVE   77 (79)
T ss_dssp             BCGGGTTSSEEE
T ss_pred             cCCCCCCeEEEe
Confidence            455555555554

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.77  E-value=0.35  Score=34.04  Aligned_cols=12  Identities=33%  Similarity=0.938  Sum_probs=8.1

Q ss_pred             eeeeccceeeEE
Q 039969          153 KCIPCLGIGYVQ  164 (184)
Q Consensus       153 kCi~ClGiGYVr  164 (184)
                      .|-.|.|-|+|+
T Consensus        83 ~C~~C~G~G~v~   94 (104)
T 2ctt_A           83 PCVVCRGAGQAK   94 (104)
T ss_dssp             CCSSSSSCSEEC
T ss_pred             cCCCCCCeeEEE
Confidence            566777777764

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=87.93  E-value=0.41  Score=31.65  Aligned_cols=34  Identities=32%  Similarity=0.673  Sum_probs=21.3

Q ss_pred             ceecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969          129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr  164 (184)
                      ..|..|+|+|.|....  |- .....|..|.|-|+|.
T Consensus        29 ~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           29 QTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEEC
T ss_pred             CCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEEC
Confidence            3677777777765422  32 2335688888888764

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=87.44  E-value=0.27  Score=39.74  Aligned_cols=14  Identities=21%  Similarity=0.479  Sum_probs=10.9

Q ss_pred             EeeeeccceeeEEE
Q 039969          152 CKCIPCLGIGYVQK  165 (184)
Q Consensus       152 ckCi~ClGiGYVrk  165 (184)
                      -.|-.|.|-|+|++
T Consensus        97 ~~C~~C~G~g~~~~  110 (248)
T 1nlt_A           97 DRCKSCNGKKVENE  110 (248)
T ss_dssp             SBCSSSTTSCEEEE
T ss_pred             CCCcccCCCceEee
Confidence            46888888888864

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=85.55  E-value=0.42  Score=38.66  Aligned_cols=37  Identities=30%  Similarity=0.636  Sum_probs=20.9

Q ss_pred             ceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969          122 EVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK  165 (184)
Q Consensus       122 ~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk  165 (184)
                      ++.|.-...|..|.|+|.     +.|. . -+|-.|.|-|+|+.
T Consensus        32 ~i~~~r~~~C~~C~G~G~-----~~g~-~-~~C~~C~G~G~~~~   68 (248)
T 1nlt_A           32 KLALNKQILCKECEGRGG-----KKGA-V-KKCTSCNGQGIKFV   68 (248)
T ss_dssp             EEEEEEEEECTTTTTCSB-----STTT-C-CCCTTSSSSSCEEE
T ss_pred             EEEeeEEEeCCCCcCccC-----CCCC-C-ccCCCCCCCcEEEE
Confidence            355565666666666664     2333 1 45666666666543

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.75  E-value=0.26  Score=34.67  Aligned_cols=33  Identities=30%  Similarity=0.650  Sum_probs=25.9

Q ss_pred             eecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969          130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ  164 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr  164 (184)
                      .|..|.|+|.|....  |. .....|..|.|-|.+.
T Consensus        47 ~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A           47 HCHYCGGSGMETINT--GPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             ECSSSSSSCEEEEEE--TTEEEEEECSSSSSSSEEC
T ss_pred             cCCCCCCCEEEEEEe--CCEEEEEECCcCCCcceEC
Confidence            699999999987553  43 3556899999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	91.81
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	91.23
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	90.11
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	89.06

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.029  Score=36.65  Aligned_cols=18  Identities=39%  Similarity=0.755  Sum_probs=9.8

Q ss_pred             eecccccceeEEEeecCC
Q 039969          130 KCRSCQGSGYVSYYNKRG  147 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krG  147 (184)
                      +|..|.|+|+|...+.-|
T Consensus        20 ~C~~C~G~G~~~~~~~~g   37 (74)
T d1nlta3          20 KCTSCNGQGIKFVTRQMG   37 (74)
T ss_dssp             CCTTSSSSSCEEEEEESS
T ss_pred             CCCCCcceeeeeEEEEec
Confidence            466666666655444433

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.035  Score=36.44  Aligned_cols=13  Identities=38%  Similarity=0.874  Sum_probs=8.6

Q ss_pred             eeeeccceeeEEE
Q 039969          153 KCIPCLGIGYVQK  165 (184)
Q Consensus       153 kCi~ClGiGYVrk  165 (184)
                      +|..|.|-|+|+|
T Consensus        66 ~C~~C~G~G~v~k   78 (79)
T d1exka_          66 PCNKCHGHGRVER   78 (79)
T ss_dssp             BCGGGTTSSEEEC
T ss_pred             CCCCCCCceEeec
Confidence            4666777777665

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.094  Score=34.28  Aligned_cols=33  Identities=30%  Similarity=0.593  Sum_probs=18.5

Q ss_pred             eecccccceeEEEeecCCcEEeEeeeeccceeeE
Q 039969          130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYV  163 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYV  163 (184)
                      .|..|.|+|.|.... ..-...-.|..|.|-||+
T Consensus        30 ~C~~C~G~G~v~~~~-g~~~~~~~C~~C~G~G~~   62 (79)
T d1exka_          30 TCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTL   62 (79)
T ss_dssp             ECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEE
T ss_pred             eCCCccceeEEEEec-ccceeeEECcccCcceeE
Confidence            467777777664322 111334457777777776

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.06  E-value=0.068  Score=34.79  Aligned_cols=32  Identities=31%  Similarity=0.715  Sum_probs=24.7

Q ss_pred             eecccccceeEEEeecCCcEEeEeeeeccceeeEEEEee
Q 039969          130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITA  168 (184)
Q Consensus       130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~  168 (184)
                      .|..|+|+|..     .+.  +-+|..|.|-|+|..++.
T Consensus         4 ~C~~C~G~G~~-----~~~--~~~C~~C~G~G~~~~~~~   35 (74)
T d1nlta3           4 LCKECEGRGGK-----KGA--VKKCTSCNGQGIKFVTRQ   35 (74)
T ss_dssp             ECTTTTTCSBS-----TTT--CCCCTTSSSSSCEEEEEE
T ss_pred             CCcCCcccccC-----CCC--CCCCCCCcceeeeeEEEE
Confidence            59999999953     233  236999999999988664