Citrus Sinensis ID: 039998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLPAGPESPLDL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccc
Coil and Loop (DISEMBL)
dlsdvthgwneISATRWVYMALGFVISVILMVCVAKVAKASLDKSLiengekcimgqsmlpagpespldl
Flexible Loop (DISEMBL)
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEkcimgqsmlpagpespldl
Low Complexity Region (SEG)
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLPAGPESPLDL
Disordered region (IsUnstruct)
*****THGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCI****************
Disordered Region (DISOPRED)
**SDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLPAG*******
Disordered Region (DISEMBL)
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLP*********
Disordered Region (DISPRO)
*****THGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLPAGP******
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSMLPAGPESPLDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
226497822	271	uncharacterized protein LOC100277800 [Ze	0.971	0.250	0.614	1e-14
308081176	271	uncharacterized protein LOC100502417 [Ze	0.971	0.250	0.6	3e-14
357121683	271	PREDICTED: TVP38/TMEM64 family membrane	0.971	0.250	0.6	3e-14
242051104	271	hypothetical protein SORBIDRAFT_02g04142	0.971	0.250	0.585	4e-14
326493936	271	predicted protein [Hordeum vulgare subsp	0.971	0.250	0.585	4e-14
125559437	413	hypothetical protein OsI_27154 [Oryza sa	0.942	0.159	0.557	1e-13
225436970	373	PREDICTED: TVP38/TMEM64 family membrane	1.0	0.187	0.549	2e-13
388493816	227	unknown [Medicago truncatula]	1.0	0.308	0.521	2e-13
388517845	274	unknown [Medicago truncatula]	1.0	0.255	0.521	4e-13
296086722	263	unnamed protein product [Vitis vinifera]	1.0	0.266	0.549	5e-13

>gi|226497822|ref|NP_001144751.1| uncharacterized protein LOC100277800 [Zea mays] gi|195646514|gb|ACG42725.1| hypothetical protein [Zea mays] gi|238008998|gb|ACR35534.1| unknown [Zea mays] gi|414591055|tpg|DAA41626.1| TPA: hypothetical protein ZEAMMB73_987275 [Zea mays]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 2/70 (2%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TR + +  GFV+SV+L++CV K+AK+SL+K+L ENGE  + G S L
Sbjct: 187 DLSDVTHGWSEISTTRRILIISGFVLSVVLIICVTKIAKSSLEKALAENGELHV-GTSQL 245

Query: 61  PAGPESPLDL 70
           P G  SPLDL
Sbjct: 246 P-GVTSPLDL 254

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308081176|ref|NP_001183824.1| uncharacterized protein LOC100502417 [Zea mays] gi|238014752|gb|ACR38411.1| unknown [Zea mays] gi|414887923|tpg|DAA63937.1| TPA: hypothetical protein ZEAMMB73_440306 [Zea mays]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 2/70 (2%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TRW+ +  GFV+SV+L++CV K+AK+SL+K+L ENGE  + G S L
Sbjct: 187 DLSDVTHGWSEISTTRWILIISGFVLSVVLIICVTKIAKSSLEKALAENGELDV-GTSQL 245

Query: 61  PAGPESPLDL 70
           P    SP DL
Sbjct: 246 PV-VASPSDL 254

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121683|ref|XP_003562547.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Brachypodium distachyon]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TRW+ +  GF++SV+L++CV +VAK+SLDK+L ENGE  I G   L
Sbjct: 187 DLSDVTHGWSEISTTRWILIISGFILSVVLIICVTRVAKSSLDKALAENGEVDI-GTPQL 245

Query: 61  PAGPESPLDL 70
           P    SP DL
Sbjct: 246 PV-VASPSDL 254

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051104|ref|XP_002463296.1| hypothetical protein SORBIDRAFT_02g041420 [Sorghum bicolor] gi|241926673|gb|EER99817.1| hypothetical protein SORBIDRAFT_02g041420 [Sorghum bicolor]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 2/70 (2%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TRW+ +  GFV+SV+L++C+ K+AK+SL+K+L ENGE  + G S L
Sbjct: 187 DLSDVTHGWSEISTTRWILIISGFVLSVVLIICITKIAKSSLEKALAENGELDV-GTSQL 245

Query: 61  PAGPESPLDL 70
           P    SP DL
Sbjct: 246 PV-VASPSDL 254

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493936|dbj|BAJ85430.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TRWV +  GFV+S++L++CV +VAK++LDK+L ENGE   +G   L
Sbjct: 187 DLSDVTHGWSEISTTRWVLIISGFVMSILLIICVTRVAKSALDKALAENGEAD-LGAPQL 245

Query: 61  PAGPESPLDL 70
           P    SP DL
Sbjct: 246 PVA-ASPSDL 254

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125559437|gb|EAZ04973.1| hypothetical protein OsI_27154 [Oryza sativa Indica Group]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 4/70 (5%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML 60
           DLSDVTHGW+EIS TRW+ +  GF++SV+L+VCV ++AK+SL+K+L ENG+    G   L
Sbjct: 331 DLSDVTHGWSEISTTRWILIISGFILSVVLIVCVTRIAKSSLEKALAENGDA---GIPQL 387

Query: 61  PAGPESPLDL 70
           P    SP DL
Sbjct: 388 PV-VASPSDL 396

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436970|ref|XP_002271997.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSM 59
           DLSD+ H WN+ S + W+++ALGFV+SVILMV + KVAKASLDK+L +N E + I+    
Sbjct: 287 DLSDIRHAWNDGSTSHWIFIALGFVVSVILMVSITKVAKASLDKALADNAEVEDILISPT 346

Query: 60  LPAGPESPLDL 70
           LP   E P+DL
Sbjct: 347 LPIVAEPPMDL 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493816|gb|AFK34974.1| unknown [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSM 59
           DLSDVTHGWNE S +RW ++ +G ++SV+LM+CV KVAK++LDK+L EN +   +     
Sbjct: 140 DLSDVTHGWNEFSKSRWAFIIIGLIVSVVLMICVTKVAKSALDKALAENEDIDGVTSSPE 199

Query: 60  LPAGPESPLDL 70
           LP   E P DL
Sbjct: 200 LPIVAEPPSDL 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517845|gb|AFK46984.1| unknown [Medicago truncatula]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSM 59
           DLSDVTHGWNE S +RW ++ +G ++SV+LM+CV KVAK +LDK+L EN +   +     
Sbjct: 187 DLSDVTHGWNEFSKSRWAFIIIGLIVSVVLMICVTKVAKFALDKALAENEDIDGVTSSPE 246

Query: 60  LPAGPESPLDL 70
           LP   E P DL
Sbjct: 247 LPIVAEPPSDL 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086722|emb|CBI32357.3| unnamed protein product [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 1   DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSM 59
           DLSD+ H WN+ S + W+++ALGFV+SVILMV + KVAKASLDK+L +N E + I+    
Sbjct: 177 DLSDIRHAWNDGSTSHWIFIALGFVVSVILMVSITKVAKASLDKALADNAEVEDILISPT 236

Query: 60  LPAGPESPLDL 70
           LP   E P+DL
Sbjct: 237 LPIVAEPPMDL 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2014530	274	AT1G03260 [Arabidopsis thalian	0.971	0.248	0.506	2.3e-14
TAIR|locus:2179654	280	AT5G19070 [Arabidopsis thalian	0.714	0.178	0.62	3.4e-11

TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/75 (50%), Positives = 54/75 (72%)

Query:     1 DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQ--- 57
             DLSD+THGW+E+S  RWV M +G  ++VIL++C+ +VAK+SLDK+L ENG + + G+   
Sbjct:   189 DLSDITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENGTE-LDGKKND 247

Query:    58 --SMLPAGPESPLDL 70
               S+LP   E P DL
Sbjct:   248 DASVLPIA-EPPPDL 261

GO:0005886 "plasma membrane" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2179654 AT5G19070 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 31/50 (62%), Positives = 37/50 (74%)

Query:     1 DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50
             DLSDVTH W+E S  RW ++    VISVILMVCV KVAK +L K+L E+G
Sbjct:   187 DLSDVTHKWSEFSPGRWAFLISSLVISVILMVCVTKVAKDALRKALAEHG 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.47    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.98u 0.11s 8.09t   Elapsed:  00:00:01
  Total cpu time:  7.98u 0.11s 8.09t   Elapsed:  00:00:01
  Start:  Mon May 20 17:20:09 2013   End:  Mon May 20 17:20:10 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0015824 "proline transport" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
COG3105	138	Uncharacterized protein conserved in bacteria [Fun	91.76
PRK11677	134	hypothetical protein; Provisional	87.96
PF03672	64	UPF0154: Uncharacterised protein family (UPF0154);	86.25
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	82.54
PRK01844	72	hypothetical protein; Provisional	81.77
PRK00523	72	hypothetical protein; Provisional	80.72

>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.76  E-value=0.34  Score=34.19  Aligned_cols=33  Identities=21%  Similarity=0.576  Sum_probs=29.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998           13 SATRWVYMALGFVISVILMVCVAKVAKASLDKS   45 (70)
Q Consensus        13 S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~a   45 (70)
                      +..-|.+.++|||+.|++...+.|+-++++.+.
T Consensus         4 t~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q   36 (138)
T COG3105           4 TFMTWEYALIGLVVGIIIGALIARLTNRKLKQQ   36 (138)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhH
Confidence            566799999999999999999999999998874

>PRK11677 hypothetical protein; Provisional

Probab=87.96  E-value=1.6  Score=30.15  Aligned_cols=26  Identities=19%  Similarity=0.588  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998           16 RWVYMALGFVISVILMVCVAKVAKAS   41 (70)
Q Consensus        16 ~W~~~~vGlVaTVvv~vyVTrvAr~A   41 (70)
                      .|++.++|||+.+++.+++-|.-.+.
T Consensus         2 ~W~~a~i~livG~iiG~~~~R~~~~~   27 (134)
T PRK11677          2 TWEYALIGLVVGIIIGAVAMRFGNRK   27 (134)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccch
Confidence            39999999999999999999985443

>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised

Probab=86.25  E-value=2  Score=26.72  Aligned_cols=30  Identities=20%  Similarity=0.430  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998           19 YMALGFVISVILMVCVAKVAKASLDKSLIENGE   51 (70)
Q Consensus        19 ~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d   51 (70)
                      +++++|++.++..+|+   ||+-+.+++.||..
T Consensus         2 ~iilali~G~~~Gff~---ar~~~~k~l~~NPp   31 (64)
T PF03672_consen    2 LIILALIVGAVIGFFI---ARKYMEKQLKENPP   31 (64)
T ss_pred             hHHHHHHHHHHHHHHH---HHHHHHHHHHHCCC
Confidence            4678888888888886   88999999999874

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=82.54  E-value=1.3  Score=29.13  Aligned_cols=29  Identities=17%  Similarity=0.338  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998           16 RWVYMALGFVISVILMVCVAKVAKASLDK   44 (70)
Q Consensus        16 ~W~~~~vGlVaTVvv~vyVTrvAr~AL~~   44 (70)
                      ||+|.++=+++-+++++.+-+++||=.++
T Consensus         1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~   29 (130)
T PF12273_consen    1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR   29 (130)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67776555555555555555666666555

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PRK01844 hypothetical protein; Provisional

Probab=81.77  E-value=6.2  Score=25.12  Aligned_cols=35  Identities=17%  Similarity=0.073  Sum_probs=25.7

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998           14 ATRWV-YMALGFVISVILMVCVAKVAKASLDKSLIENGE   51 (70)
Q Consensus        14 ~~~W~-~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d   51 (70)
                      .|-|+ +.+++|++.++..+|+   ||+-..+++.||..
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~---ark~~~k~lk~NPp   38 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFI---ARKYMMNYLQKNPP   38 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCC
Confidence            34443 3456777777788775   78999999999864

>PRK00523 hypothetical protein; Provisional

Probab=80.72  E-value=7.8  Score=24.66  Aligned_cols=27  Identities=22%  Similarity=0.218  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998           22 LGFVISVILMVCVAKVAKASLDKSLIENGE   51 (70)
Q Consensus        22 vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d   51 (70)
                      ++|++.++..+|   +||+-..+++.||-.
T Consensus        13 ~~li~G~~~Gff---iark~~~k~l~~NPp   39 (72)
T PRK00523         13 PLLIVGGIIGYF---VSKKMFKKQIRENPP   39 (72)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHCcC
Confidence            345555556665   578999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00