Citrus Sinensis ID: 040013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MSRQNTRGGFSGRSPLRPDGYYSHRNRHVGGASKPFSNEDRMSQGRGKHPHHISHGSGSKHFKDKPTSNFVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGNYDLLSSSTQSDSKNMHPDVGASKPLAHDCFRTKDRTSQGRGKCSHHTFPGSRSNHFNDKPTSDSVYRLATHLPVVIPNSLGADGSSMKQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDEIGIQIGETPEKKEEDDATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
ccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEEcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEccccccccccccccccccHHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccEEEEEEEccccccccccccccccccccccccEEEccccccEEEEEcccccccccEEEEcccccEEEEccccccccccccccccccccccHHHccccccccEEEEcccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEccccccccccccccEcccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHcEEEEcccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccEEEcccHHHcccccccccccEcccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEccccccccccHHHcccccEEEEEccccEEEEEccccccccccEEEEccccEEEEccccHHHHccccccccccccHHHHHHccccccEEEEEEEcc
msrqntrggfsgrsplrpdgyyshrnrhvggaskpfsnedrmsqgrgkhphhishgsgskhfkdkptsnfvyrpkktspdvisnsleaegsntkhpecfeapdslygnydllssstqsdsknmhpdvgaskplahdcfrtkdrtsqgrgkcshhtfpgsrsnhfndkptsdsvYRLATHlpvvipnslgadgssmkqpecigasdsktqlpdvspnsleagvscmkqpecivvsdlvtgdvshsfsghsdsknmhldeigiqigetpekkeeddatsklnfsgklkvghmqesvppaiadtkdqvsleegpnnflsigvsensvqqaidkpfdlcppkkgtvmlnpsllvtnrqkrndlklsiGAKSNYIEAWYGITEEVKIVKICRdlglgpggfyqpgyrdgANLYLKMMClgknwdpetsqygtsrptdgavppiipveFHQLVGKAIQDSRALIEKISTGRkdieaelpcmspdicianfysatgklglhqdkdesqesidkclpvvsfsigdsaeFLYGDLRDVANAKKVILEsgdvlifggksrrifhgvekifpdtapkslleETSMRrgrlnltfrqy
msrqntrggfsgrsplrpdgYYSHRNRHVGGASKPFSNEDRMSQGRGKHPhhishgsgskhfkdkptSNFVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGNYDLLSSSTQSDSKNMHPDVGASKPLAHDCFRTkdrtsqgrgkcshhtfpgsrsnhfndKPTSDSVYRLATHLPVVIPNSLGADGSSMKQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSfsghsdsknmhLDEIGIQIgetpekkeeddATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVmlnpsllvtnrqkrndlklsigakSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVIlesgdvlifggksrrifhgvekifpdtapkslleetsmrrgrlnltfrqy
MSRQNTRGGFSGRSPLRPDGYYSHRNRHVGGASKPFSNEDRMSQGRGKHPHHISHGSGSKHFKDKPTSNFVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGNYDLLSSSTQSDSKNMHPDVGASKPLAHDCFRTKDRTSQGRGKCSHHTFPGSRSNHFNDKPTSDSVYRLATHLPVVIPNSLGADGSSMKQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDEIGIQIGETPEKKEEDDATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
****************************************************************************************************************************************************************************VYRLATHLPVVIP*************************************SCMKQPECIVVSDLVTGDV**************************************************************************************IDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPE***********GAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLH*********IDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFP*************************
***************LRPDGYYSHRNR**************************************PTSNFVYRPKKTSPDV****************CFEAPDSLYGNYDL******************SKPLAHDCF*****************************PTSDSVYRLATHLPVVIPNSLG***********************VS*NSLEAGVSCMKQPECIVVSDL*****************************************KLNFSGKLKVGH************************************************************************SIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
**********SGRSPLRPDGYYSHRNRHVGGASKPFS**************************DKPTSNFVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGNYDLLSSS*********PDVGASKPLAHDCFRTK***************PGSRSNHFNDKPTSDSVYRLATHLPVVIPNSLGADGSSMKQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDEIGIQIGET**********SKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
***************L******************************************SKHFKDKPTSNFVYRPKKTSPDVISNSLEA*******PECFEAPDSLYGNYDL*********************************************************TSDSVYRLATHLPVVIPNSL*****************SKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGD************NMHLDEIGIQIGE****************************************************************KPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
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MSRQNTRGGFSGRSPLRPDGYYSHRNRHVGGASKPFSNEDRMSQGRGKHPHHISHGSGSKHFKDKPTSNFVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGNYDLLSSSTQSDSKNMHPDVGASKPLAHDCFRTKDRTSQGRGKCSHHTFPGSRSNHFNDKPTSDSVYRLATHLPVVIPNSLGADGSSMKQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDEIGIQIGETPEKKEEDDATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
P05050216 Alpha-ketoglutarate-depen N/A no 0.208 0.564 0.348 1e-14
P37462216 Alpha-ketoglutarate-depen yes no 0.182 0.495 0.381 4e-14
P0CAT7220 Alpha-ketoglutarate-depen yes no 0.175 0.468 0.389 1e-12
B8GWW6220 Alpha-ketoglutarate-depen yes no 0.175 0.468 0.389 1e-12
O60066302 Alpha-ketoglutarate-depen yes no 0.261 0.506 0.296 1e-10
Q54N08393 Alpha-ketoglutarate-depen yes no 0.186 0.277 0.325 2e-08
P0CB42389 Alkylated DNA repair prot yes no 0.172 0.259 0.303 5e-08
Q13686389 Alkylated DNA repair prot yes no 0.133 0.200 0.365 7e-08
Q9SA98345 Alpha-ketoglutarate-depen no no 0.136 0.231 0.357 4e-05
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1 Back     alignment and function desciption
 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)

Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
           P +P  FH L  +A                   A  P   PD C+ N Y+   KL LHQD
Sbjct: 90  PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 133

Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
           KDE     D   P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR  +HG+
Sbjct: 134 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 189

Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
           + +     P ++         R NLTFRQ
Sbjct: 190 QPLKAGFHPLTI-------DCRYNLTFRQ 211
Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).
Escherichia coli (strain K12) (taxid: 83333)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alkB PE=3 SV=2 Back     alignment and function description
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=alkB PE=3 SV=1 Back     alignment and function description
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2 Back     alignment and function description
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abh1 PE=2 SV=3 Back     alignment and function description
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium discoideum GN=alkB PE=2 SV=1 Back     alignment and function description
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus GN=Alkbh1 PE=1 SV=1 Back     alignment and function description
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
449461715502 PREDICTED: uncharacterized protein LOC10 0.645 0.752 0.482 3e-90
224070999322 predicted protein [Populus trichocarpa] 0.486 0.885 0.571 3e-88
225442044457 PREDICTED: uncharacterized protein LOC10 0.464 0.595 0.572 2e-85
255576587465 conserved hypothetical protein [Ricinus 0.513 0.647 0.549 5e-85
240255344455 2-oxoglutarate-dependent dioxygenase fam 0.5 0.643 0.55 3e-83
24030229313 unknown protein [Arabidopsis thaliana] 0.5 0.936 0.55 3e-82
297829976311 hypothetical protein ARALYDRAFT_478829 [ 0.491 0.926 0.551 8e-82
23397329253 unknown protein [Arabidopsis thaliana] 0.421 0.976 0.608 2e-79
242037635381 hypothetical protein SORBIDRAFT_01g00360 0.435 0.669 0.560 5e-77
297735575554 unnamed protein product [Vitis vinifera] 0.426 0.451 0.553 2e-76
>gi|449461715|ref|XP_004148587.1| PREDICTED: uncharacterized protein LOC101205291 [Cucumis sativus] gi|449516744|ref|XP_004165406.1| PREDICTED: uncharacterized protein LOC101224716 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 191/396 (48%), Positives = 248/396 (62%), Gaps = 18/396 (4%)

Query: 202 GASDSKTQ---LPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDE 258
           GA D + Q     D+S N+ +   S     +CI +S     +VS S   HS  + +H+  
Sbjct: 114 GAVDLQLQHNSTDDMSNNNKQLLESIASNSDCIELSSSSAQNVSKSL--HSAVERIHVQG 171

Query: 259 IGIQIGETPEKKEEDDATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFLSIG 318
                G   +    D+         +LKV   Q S+     D    + L +  + F S  
Sbjct: 172 PTAVCGSYGDSFPYDNCNRSDVVGQELKV---QPSLKSCAKDESFTIQLGKSNDVFNSTD 228

Query: 319 VSENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLKLSIGAKSN--------YI 370
             +      +D  FD+CPPK G VMLNPSLL  NR+KRN+++ ++   +         ++
Sbjct: 229 SKDKKPSVDLDS-FDICPPKTGGVMLNPSLLAMNREKRNEMRRAMEGNNGIVLRPGMVHL 287

Query: 371 EAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRP 430
           +    + ++ KIVK CRDLG+G GGFYQPGYR+G  L+LKMMCLGKNWDP++S YG  RP
Sbjct: 288 KGGISVRDQAKIVKKCRDLGIGAGGFYQPGYREGGKLHLKMMCLGKNWDPDSSTYGDIRP 347

Query: 431 TDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGK 490
            D   PP +P EF+QLV KAI+DS A++ + ST  K+ E  LP M PDICI NFYS  G+
Sbjct: 348 FDDTKPPNLPDEFYQLVEKAIKDSYAIMAEDST-IKNPERVLPWMKPDICIVNFYSQNGR 406

Query: 491 LGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSR 550
           LGLHQD+DESQES+DK LPV+SFSIGDSAEFL+GD  DV  A+KV LESGD+LIFGGKSR
Sbjct: 407 LGLHQDRDESQESLDKGLPVISFSIGDSAEFLFGDRSDVDQAEKVTLESGDILIFGGKSR 466

Query: 551 RIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY 586
            +FHGV  I  +TAPK+LLE T++R GRLNLTFRQY
Sbjct: 467 HVFHGVTAIHSNTAPKALLEATNLRPGRLNLTFRQY 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224070999|ref|XP_002303323.1| predicted protein [Populus trichocarpa] gi|222840755|gb|EEE78302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225442044|ref|XP_002269640.1| PREDICTED: uncharacterized protein LOC100263508 [Vitis vinifera] gi|297742962|emb|CBI35829.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576587|ref|XP_002529184.1| conserved hypothetical protein [Ricinus communis] gi|223531362|gb|EEF33198.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|240255344|ref|NP_566479.5| 2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana] gi|9294641|dbj|BAB02980.1| unnamed protein product [Arabidopsis thaliana] gi|332641958|gb|AEE75479.1| 2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|24030229|gb|AAN41292.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297829976|ref|XP_002882870.1| hypothetical protein ARALYDRAFT_478829 [Arabidopsis lyrata subsp. lyrata] gi|297328710|gb|EFH59129.1| hypothetical protein ARALYDRAFT_478829 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|23397329|gb|AAK44006.2|AF370191_1 unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242037635|ref|XP_002466212.1| hypothetical protein SORBIDRAFT_01g003600 [Sorghum bicolor] gi|241920066|gb|EER93210.1| hypothetical protein SORBIDRAFT_01g003600 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|297735575|emb|CBI18069.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2087452455 AT3G14160 [Arabidopsis thalian 0.5 0.643 0.55 1.2e-81
TIGR_CMR|SPO_0042198 SPO_0042 "alkylated DNA repair 0.168 0.5 0.412 9.4e-15
UNIPROTKB|P05050216 alkB [Escherichia coli K-12 (t 0.179 0.486 0.396 5.3e-14
UNIPROTKB|P37462216 alkB "Alpha-ketoglutarate-depe 0.182 0.495 0.381 6.8e-14
UNIPROTKB|Q0C209216 alkB "Alkylated DNA repair pro 0.165 0.449 0.407 5.9e-12
UNIPROTKB|Q880N6228 alkB "DNA alkylation damage re 0.167 0.429 0.403 7.6e-12
UNIPROTKB|Q48JG4228 alkB "Alkylated DNA repair pro 0.167 0.429 0.394 1.7e-10
UNIPROTKB|Q4KB70226 alkB "Alkylated DNA repair pro 0.179 0.464 0.370 4.9e-10
DICTYBASE|DDB_G0285575393 alkB "alkylated DNA repair pro 0.209 0.312 0.335 1.6e-08
POMBASE|SPBC13G1.04c302 abh1 "alkB homolog/2-OG-Fe(II) 0.177 0.344 0.371 1.4e-07
TAIR|locus:2087452 AT3G14160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 792 (283.9 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 165/300 (55%), Positives = 210/300 (70%)

Query:   291 QESVPPAIADTKDQVSLEEGPNNFLSIGVSENSVQQAIDKPFDLCPPKKGTVMLNPSLLV 350
             QESV   +    +  S+E+  +   + G   NS  ++  + FD+   KKG ++L P+LLV
Sbjct:   159 QESVSSTVVQKVELSSVEDQKSAPKADGAG-NSSNESSTRHFDIFLEKKG-IVLKPNLLV 216

Query:   351 TNRQKRNDLKLSIGAKSN----YIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGAN 406
              +R+K+   K   G         ++ +  I ++V IV  CR LGLG GGFYQPGYRD A 
Sbjct:   217 LSREKKKAAKGYSGTVIRPGMVLLKNYLSINDQVMIVNKCRRLGLGEGGFYQPGYRDEAK 276

Query:   407 LYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRK 466
             L+LKMMCLGKNWDPETS+YG +RP DG+  P IP EF+Q V KA+++S++L    S   K
Sbjct:   277 LHLKMMCLGKNWDPETSRYGETRPFDGSTAPRIPAEFNQFVEKAVKESQSLAASNSKQTK 336

Query:   467 DIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDL 526
               + E+P M PDICI NFYS+TG+LGLHQDKDES+ SI K LPVVSFSIGDSAEFLYGD 
Sbjct:   337 GGD-EIPFMLPDICIVNFYSSTGRLGLHQDKDESENSIRKGLPVVSFSIGDSAEFLYGDQ 395

Query:   527 RDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY 586
             RD   A+ + LESGDVL+FGG+SR++FHGV  I  DTAPK+LL+ETS+R GRLNLTFRQY
Sbjct:   396 RDEDKAETLTLESGDVLLFGGRSRKVFHGVRSIRKDTAPKALLQETSLRPGRLNLTFRQY 455
GO:0005634 "nucleus" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TIGR_CMR|SPO_0042 SPO_0042 "alkylated DNA repair protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P05050 alkB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P37462 alkB "Alpha-ketoglutarate-dependent dioxygenase AlkB" [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (taxid:99287)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C209 alkB "Alkylated DNA repair protein AlkB" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q880N6 alkB "DNA alkylation damage repair protein AlkB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q48JG4 alkB "Alkylated DNA repair protein AlkB" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KB70 alkB "Alkylated DNA repair protein AlkB" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285575 alkB "alkylated DNA repair protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC13G1.04c abh1 "alkB homolog/2-OG-Fe(II) oxygenase family Abh1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 9e-44
PRK15401213 PRK15401, PRK15401, alpha-ketoglutarate-dependent 5e-22
TIGR00568169 TIGR00568, alkb, DNA alkylation damage repair prot 6e-19
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 6e-18
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  153 bits (390), Expect = 9e-44
 Identities = 67/206 (32%), Positives = 89/206 (43%), Gaps = 32/206 (15%)

Query: 382 IVKICRDLGLGPGGFYQPGYRDGANLYLKMMC---LGKNWDPETSQYGTSRPTDGAVPPI 438
              + R+L L    + QP    G  + ++M     LG   D    +Y  +  T    PP 
Sbjct: 14  QAALLREL-LAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGPGYRYSGTPVTGEPWPPF 72

Query: 439 IPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKD 498
            P    QL  +                    A  P   P+ C+ NFY    ++GLHQDKD
Sbjct: 73  -PAVLLQLAERLAAA----------------AGPPGFEPNACLVNFYRPGARMGLHQDKD 115

Query: 499 ESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEK 558
           E     D   P+VS S+GD A F +G          + LESGDVL+ GG SR  +HGV +
Sbjct: 116 EL----DFGAPIVSVSLGDPALFRFGGKTRDDPTIALPLESGDVLVMGGPSRLAYHGVPR 171

Query: 559 IFPDTAPKSLLEETSMRRGRLNLTFR 584
           I P T P        +  GR+NLTFR
Sbjct: 172 IKPGTHP-------LLGGGRINLTFR 190

Length = 190
>gnl|CDD|237957 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>gnl|CDD|129659 TIGR00568, alkb, DNA alkylation damage repair protein AlkB Back     alignment and domain information
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 100.0
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.97
KOG2731378 consensus DNA alkylation damage repair protein [RN 99.86
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.74
KOG2731378 consensus DNA alkylation damage repair protein [RN 99.7
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.62
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 98.54
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.47
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 97.15
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.12
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 96.78
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.54
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 93.93
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 90.75
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 88.77
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 85.59
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 83.53
TIGR02466201 conserved hypothetical protein. This family consis 80.54
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-47  Score=370.68  Aligned_cols=197  Identities=28%  Similarity=0.498  Sum_probs=175.1

Q ss_pred             cccCCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecC-CcccCC--CCccCCCCCCCCCCCC
Q 040013          361 LSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLG-KNWDPE--TSQYGTSRPTDGAVPP  437 (586)
Q Consensus       361 ~~~~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLG-y~WD~D--TyrYs~~~P~dGap~p  437 (586)
                      ....+|++++++|. .++|++|+++|++... ..+|+++.++.|+.|++||++|| ++|..|  .|+|++.++.++.+||
T Consensus        14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~-~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp   91 (213)
T PRK15401         14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAA-QAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP   91 (213)
T ss_pred             eecCCCcEEeCCCC-HHHHHHHHHHHHHHHh-cCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence            34678999999996 8889999999999633 37899999988999999999999 899877  5788887778899999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCC
Q 040013          438 IIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGD  517 (586)
Q Consensus       438 piPe~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGa  517 (586)
                      +||++|.+|+++++..+                +++.+.||+||||||++|++||||+|++|.+    ++.||||||||+
T Consensus        92 ~~P~~l~~L~~~~~~~~----------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~----~~~pI~SvSLG~  151 (213)
T PRK15401         92 AMPASFLALAQRAAAAA----------------GFPGFQPDACLINRYAPGAKLSLHQDKDERD----FRAPIVSVSLGL  151 (213)
T ss_pred             CchHHHHHHHHHHHHHc----------------CCCCCCCCEEEEEeccCcCccccccCCCccc----CCCCEEEEeCCC
Confidence            99999999999987543                4457899999999999999999999987754    689999999999


Q ss_pred             ceEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEeecC
Q 040013          518 SAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY  586 (586)
Q Consensus       518 SriFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRqV  586 (586)
                      +|+|+|++.++.+++.+|.|+|||||||+|++|++||||+++++.+.|.       +...|||||||++
T Consensus       152 ~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~-------~g~~RINLTFR~~  213 (213)
T PRK15401        152 PAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPL-------TGECRINLTFRKA  213 (213)
T ss_pred             CeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCC-------CCCCeEEEEeEcC
Confidence            9999999877777789999999999999999999999999999887762       4678999999986

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3t3y_A206 Crystal Structure Of Alkb In Complex With Fe(Iii) A 6e-16
3khb_A219 Crystal Structure Of Escherichia Coli Alkb With Co( 6e-16
2fd8_A211 Crystal Structure Of Alkb In Complex With Fe(Ii), 2 6e-16
3o1m_A206 Iron-Catalyzed Oxidation Intermediates Captured In 1e-15
3bie_A202 X-Ray Structure Of E Coli Alkb Bound To Dsdna Conta 1e-15
3bi3_A201 X-Ray Structure Of Alkb Protein Bound To Dsdna Cont 1e-15
3khc_A219 Crystal Structure Of Escherichia Coli Alkb In Compl 4e-15
3bkz_A201 X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna 7e-15
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And 2-(3- Hydroxypicolinomido)acetic Acid Length = 206 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
           P +P  FH L  +A                   A  P   PD C+ N Y+   KL LHQD
Sbjct: 80  PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 123
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
           KDE     D   P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR  +HG+
Sbjct: 124 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 179
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
           + +     P ++         R NLTFRQ
Sbjct: 180 QPLKAGFHPLTI-------DCRYNLTFRQ 201
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And 2-Og Length = 219 Back     alignment and structure
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii), 2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T Length = 211 Back     alignment and structure
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna Repair Dioxygenase Length = 206 Back     alignment and structure
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing 1meaT WITH Mn And 2kg Length = 202 Back     alignment and structure
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing 1meaA WITH Cofactors Length = 201 Back     alignment and structure
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With Ssdna Containing A 1-Methylguanine Lesion Length = 219 Back     alignment and structure
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The Active Site Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 4e-34
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 1e-11
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 2e-07
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
 Score =  127 bits (321), Expect = 4e-34
 Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 31/216 (14%)

Query: 374 YGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGK---NWDPETSQYGTSRP 430
           +      ++++   D+      F Q     G  + + M   G        +   Y    P
Sbjct: 15  FAFNAAEQLIRDINDV-ASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDP 73

Query: 431 TDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGK 490
                 P +P  FH L  +A                   A  P   PD C+ N Y+   K
Sbjct: 74  QTNKPWPAMPQSFHNLCQRAAT----------------AAGYPDFQPDACLINRYAPGAK 117

Query: 491 LGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSR 550
           L LHQDKDE     D   P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR
Sbjct: 118 LSLHQDKDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESR 173

Query: 551 RIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY 586
             +HG++ +     P            R NLTFRQ 
Sbjct: 174 LFYHGIQPLKAGFHPL-------TIDCRYNLTFRQA 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 99.97
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 98.08
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.89
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 95.51
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 95.47
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 95.26
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 95.06
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.0
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 93.72
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 93.44
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 91.21
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 89.56
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 87.41
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
Probab=100.00  E-value=2.5e-42  Score=332.43  Aligned_cols=196  Identities=31%  Similarity=0.508  Sum_probs=169.7

Q ss_pred             ccCCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecC-CcccCC--CCccCCCCCCCCCCCCC
Q 040013          362 SIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLG-KNWDPE--TSQYGTSRPTDGAVPPI  438 (586)
Q Consensus       362 ~~~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLG-y~WD~D--TyrYs~~~P~dGap~pp  438 (586)
                      ...||++++++|+. ++|++|+++|++... ..+|+++.++.|+.|++||++|| ++|..|  .|+|++.++..+.+|++
T Consensus         4 ~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~-~~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~~   81 (211)
T 3i3q_A            4 PLAAGAVILRRFAF-NAAEQLIRDINDVAS-QSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA   81 (211)
T ss_dssp             CCBTTBEEETTTTT-TTHHHHHHHHHHHHH-HSCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCC
T ss_pred             ecCCCCEEECCcCh-HHHHHHHHHHHHHHh-cCCCceeEcCCCCcCchhhcccccceeecCCCCcCcCCCccCCCCCCCc
Confidence            45679999999998 578899999988633 35788888888999999999998 899887  47888877678899999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCc
Q 040013          439 IPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDS  518 (586)
Q Consensus       439 iPe~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaS  518 (586)
                      ||++|.+|++++.+.+                +++.+.||+||||+|++|++|+||+|++|.+    ++.||+|||||++
T Consensus        82 ~P~~L~~l~~~~~~~~----------------g~~~~~pn~~LvN~Y~~G~~i~~H~D~~e~~----~~~pI~svSLG~~  141 (211)
T 3i3q_A           82 MPQSFHNLCQRAATAA----------------GYPDFQPDACLINRYAPGAKLSLHQDKDEPD----LRAPIVSVSLGLP  141 (211)
T ss_dssp             CCHHHHHHHHHHHHHT----------------TCTTCCCCEEEEEEECTTCCEEEECCCCCSC----TTSCEEEEEEESC
T ss_pred             hHHHHHHHHHHHHHhc----------------CCCCcCCCEEEEEEEcCCCCcccccCCCccc----cCCCEEEEECCCC
Confidence            9999999999886542                4567899999999999999999999976754    4589999999999


Q ss_pred             eEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEeecC
Q 040013          519 AEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY  586 (586)
Q Consensus       519 riFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRqV  586 (586)
                      |+|.|++..+.+....|.|++||||||+|++|+|+|||++++.++.|.       .++.|||||||++
T Consensus       142 ~~f~f~~~~~~~~~~~i~L~~GsllvM~G~~r~~~H~I~~~~~~~~p~-------~~~~RIsLTFR~~  202 (211)
T 3i3q_A          142 AIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPL-------TIDCRYNLTFRQA  202 (211)
T ss_dssp             EEEEECCSSTTSCCEEEEECTTCEEEECGGGTTCCEEECCCCCCCBTT-------TBTCEEEEEEECC
T ss_pred             eEEEEecccCCCceEEEECCCCCEEEECchHHceEeccCcccCCcCCC-------CCCCEEEEEeeec
Confidence            999999876666789999999999999999999889999999887662       4789999999975
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 5e-30
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 3e-10
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (287), Expect = 5e-30
 Identities = 61/215 (28%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 374 YGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGK-NWDPETSQYGTSR--P 430
           +      ++++   D+      F Q     G  + + M   G   W      Y  S   P
Sbjct: 11  FAFNAAEQLIRDINDV-ASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDP 69

Query: 431 TDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGK 490
                 P +P  FH L  +A                   A  P   PD C+ N Y+   K
Sbjct: 70  QTNKPWPAMPQSFHNLCQRAATA----------------AGYPDFQPDACLINRYAPGAK 113

Query: 491 LGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSR 550
           L LHQDKDE         P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR
Sbjct: 114 LSLHQDKDEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESR 169

Query: 551 RIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
             +HG++ +     P            R NLTFRQ
Sbjct: 170 LFYHGIQPLKAGFHPL-------TIDCRYNLTFRQ 197
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 96.32
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 94.9
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 86.48
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-45  Score=346.01  Aligned_cols=194  Identities=31%  Similarity=0.508  Sum_probs=171.1

Q ss_pred             CCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecC-CcccCCC--CccCCCCCCCCCCCCCCh
Q 040013          364 GAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLG-KNWDPET--SQYGTSRPTDGAVPPIIP  440 (586)
Q Consensus       364 ~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLG-y~WD~DT--yrYs~~~P~dGap~ppiP  440 (586)
                      .||++++++|+++ +|++|+++|++.. ...+|+++.++.|++|++||+++| ++|.+|.  |+|+..++.++.+||+||
T Consensus         2 apG~v~l~~f~~~-~~~~ll~~~~~~~-~~~p~r~~~~p~g~~msv~~~~~g~~gW~~d~~~Yry~~~~~~~~~~wp~iP   79 (200)
T d2fdia1           2 AAGAVILRRFAFN-AAEQLIRDINDVA-SQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP   79 (200)
T ss_dssp             CTTEEEETTTTTT-THHHHHHHHHHHH-HHSCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCCC
T ss_pred             CCCEEEECCcCCH-HHHHHHHHHHHHH-hhCCceeeecCCCCcceEEEEeccccccccCCcCcccccccCCCCCCCCCcc
Confidence            5899999999875 5667998887763 346899999888999999999999 7888885  467778888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceE
Q 040013          441 VEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAE  520 (586)
Q Consensus       441 e~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSri  520 (586)
                      ++|.+|+++++.++                +++.+.||+||||+|++|++|++|+|++|.+    ++.||+|||||++|+
T Consensus        80 ~~l~~L~~~~~~~~----------------~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~----~~~pIvslSLG~~~~  139 (200)
T d2fdia1          80 QSFHNLCQRAATAA----------------GYPDFQPDACLINRYAPGAKLSLHQDKDEPD----LRAPIVSVSLGLPAI  139 (200)
T ss_dssp             HHHHHHHHHHHHHH----------------TCTTCCCSEEEEEEECTTCCEEEECCCCSSC----TTSCEEEEEEESCEE
T ss_pred             HHHHHHHHHHHHHc----------------CCCccCCCeeEEEEecCCCCccccccCCccc----cCCCceEEEEeCCee
Confidence            99999999987654                5678899999999999999999999988875    679999999999999


Q ss_pred             EEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEeecC
Q 040013          521 FLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY  586 (586)
Q Consensus       521 FlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRqV  586 (586)
                      |+|+...+.+++..+.|++||||||+|++|+|||||+++++++.|.       .++.|||||||++
T Consensus       140 f~f~~~~~~~~~~~~~L~~Gdllvm~G~~r~~~H~V~~~~~~~~~~-------~~~~RislTfR~~  198 (200)
T d2fdia1         140 FQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPL-------TIDCRYNLTFRQA  198 (200)
T ss_dssp             EEECCSSTTSCCEEEEECTTCEEEECGGGGGCCEEECCCCCCCBTT-------TBTCEEEEEEECC
T ss_pred             EEecccccCCceEEEEcCCCCEEEeCcchhheEecCCcccCCCCCC-------CCCCeEEEEEEec
Confidence            9999988888889999999999999999999999999999887663       4789999999984
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure