Citrus Sinensis ID: 040024

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccEEEEHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
ITNKLLAfwnhpagpktihfwaptfkwgisianiadfsnynmknwnLFSVNFAMARTGLYQLSRKIKQN
Flexible Loop (DISEMBL)
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Low Complexity Region (SEG)
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Disordered region (IsUnstruct)
****LLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQL*******
Disordered Region (DISOPRED)
**NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Disordered Region (DISEMBL)
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Disordered Region (DISPRO)
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
O95563	127	Mitochondrial pyruvate ca	yes	no	0.927	0.503	0.366	4e-09
P38718	127	Mitochondrial pyruvate ca	yes	no	0.884	0.480	0.379	3e-08
Q9D023	127	Mitochondrial pyruvate ca	yes	no	0.811	0.440	0.378	5e-08
Q5R4Z3	127	Mitochondrial pyruvate ca	yes	no	0.927	0.503	0.355	6e-08
Q09896	118	Probable mitochondrial py	yes	no	0.463	0.271	0.593	1e-07
P53311	146	Mitochondrial pyruvate ca	yes	no	0.826	0.390	0.361	5e-06
O01578	133	Probable mitochondrial py	yes	no	0.811	0.421	0.378	7e-06
P38857	129	Mitochondrial pyruvate ca	no	no	0.434	0.232	0.566	2e-05

>sp|O95563|MPC2_HUMAN Mitochondrial pyruvate carrier 2 OS=Homo sapiens GN=MPC2 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 26/90 (28%)

Query: 1   ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------S 38
           +  KL   +NHPAGP+T+ FWAP  KWG+  A +AD                       S
Sbjct: 24  LPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWS 83

Query: 39  NYNM----KNWNLFSVNFAMARTGLYQLSR 64
            Y++    KNW+LF+VNF +   G  QL R
Sbjct: 84  RYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113

Homo sapiens (taxid: 9606)

>sp|P38718|MPC2_RAT Mitochondrial pyruvate carrier 2 OS=Rattus norvegicus GN=Mpc2 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 26/87 (29%)

Query: 9   WNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SNYNM---- 42
           +NHPAGP+T+ FWAP  KWG+  A +AD                       S Y++    
Sbjct: 32  YNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91

Query: 43  KNWNLFSVNFAMARTGLYQLSRKIKQN 69
           KNW+LF+VNF +   G  QL R  K N
Sbjct: 92  KNWSLFAVNFFVGSAGASQLFRIWKYN 118

Rattus norvegicus (taxid: 10116)

>sp|Q9D023|MPC2_MOUSE Mitochondrial pyruvate carrier 2 OS=Mus musculus GN=Mpc2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 26/82 (31%)

Query: 9   WNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SNYNM---- 42
           +NHPAGP+T+ FWAP  KWG+  A +AD                       S Y++    
Sbjct: 32  YNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91

Query: 43  KNWNLFSVNFAMARTGLYQLSR 64
           KNW+LF+VNF +   G  QL R
Sbjct: 92  KNWSLFAVNFFVGSAGASQLFR 113

Mus musculus (taxid: 10090)

>sp|Q5R4Z3|MPC2_PONAB Mitochondrial pyruvate carrier 2 OS=Pongo abelii GN=MPC2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 26/90 (28%)

Query: 1   ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------S 38
           +  KL   +NHPAGP+T+ FWAP  K G+  A +AD                       S
Sbjct: 24  LPEKLRPLYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWS 83

Query: 39  NYNM----KNWNLFSVNFAMARTGLYQLSR 64
            Y++    KNW+LF+VNF +   G  QL R
Sbjct: 84  RYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113

Pongo abelii (taxid: 9601)

>sp|Q09896|MPC1_SCHPO Probable mitochondrial pyruvate carrier 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.09 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 8  FWNHPAGPKTIHFWAPTFKWGISIANIADFSN 39
          FWNHPAGPKT+HFWAP  KW + ++ I D++ 
Sbjct: 9  FWNHPAGPKTVHFWAPAMKWTLVLSGIGDYAR 40

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53311|MPC3_YEAST Mitochondrial pyruvate carrier 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP43 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 26/83 (31%)

Query: 8  FWNHPAGPKTIHFWAPTFKWGISIANIADF----------SNYNM--------------- 42
          FWN   GPKT+HFWAPT KWG+  A + D            N ++               
Sbjct: 13 FWNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIK 72

Query: 43 -KNWNLFSVNFAMARTGLYQLSR 64
           KN+ L SVNF +  T  Y L+R
Sbjct: 73 PKNYLLASVNFFLGCTAGYHLTR 95

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O01578|MPC1_CAEEL Probable mitochondrial pyruvate carrier 1 OS=Caenorhabditis elegans GN=F53F10.3 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 26/82 (31%)

Query: 9   WNHPAGPKTIHFWAPTFKWGISIANIADFSNYNMK------------------------- 43
           WNH AGPKT+ FWAPT KW +  A +AD +    K                         
Sbjct: 31  WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITP 90

Query: 44  -NWNLFSVNFAMARTGLYQLSR 64
            N+ L SVNF +  TGL QL R
Sbjct: 91  INYYLSSVNFFVMCTGLAQLCR 112

Caenorhabditis elegans (taxid: 6239)

>sp|P38857|MPC2_YEAST Mitochondrial pyruvate carrier 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR162W PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 8  FWNHPAGPKTIHFWAPTFKWGISIANIADF 37
          FW    GPKT+HFWAPT KWG+  A  +D 
Sbjct: 13 FWQSETGPKTVHFWAPTLKWGLVFAGFSDM 42

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
357164393	110	PREDICTED: brain protein 44-like [Brachy	0.985	0.618	0.627	2e-22
195608224	110	brain protein 44 [Zea mays] gi|195628422	0.971	0.609	0.623	9e-22
115471895	109	Os07g0449100 [Oryza sativa Japonica Grou	1.0	0.633	0.6	1e-21
115476002	109	Os08g0344300 [Oryza sativa Japonica Grou	1.0	0.633	0.6	1e-21
357447839	106	hypothetical protein MTR_2g025480 [Medic	0.985	0.641	0.606	2e-21
226504592	110	brain protein 44 [Zea mays] gi|195652097	0.971	0.609	0.612	2e-21
242045938	109	hypothetical protein SORBIDRAFT_02g03605	1.0	0.633	0.589	2e-21
15235603	108	uncharacterized protein [Arabidopsis tha	0.985	0.629	0.606	3e-21
226497018	110	uncharacterized protein LOC100273562 [Ze	0.971	0.609	0.602	4e-21
297803890	108	hypothetical protein ARALYDRAFT_492636 [	0.985	0.629	0.606	5e-21

>gi|357164393|ref|XP_003580038.1| PREDICTED: brain protein 44-like [Brachypodium distachyon]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 64/94 (68%), Gaps = 26/94 (27%)

Query: 2  TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SN 39
          ++KL AFWNHPAGPKTIHFWAPTFKWGISIANIADF                      S 
Sbjct: 3  SSKLQAFWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKISYPQQVAVACTGIVWSR 62

Query: 40 YNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          Y+M    KNWNLFSVN AMA TGLYQLSRKI+Q+
Sbjct: 63 YSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRQD 96

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195608224|gb|ACG25942.1| brain protein 44 [Zea mays] gi|195628422|gb|ACG36041.1| brain protein 44 [Zea mays] gi|223947039|gb|ACN27603.1| unknown [Zea mays] gi|413917093|gb|AFW57025.1| brain protein 44 isoform 1 [Zea mays] gi|413917094|gb|AFW57026.1| brain protein 44 isoform 2 [Zea mays] gi|413917095|gb|AFW57027.1| brain protein 44 isoform 3 [Zea mays]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 62/93 (66%), Gaps = 26/93 (27%)

Query: 3  NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SNY 40
           KL AFWNHPAGPKTIHFWAPTFKWGISIANIADF                      S Y
Sbjct: 4  TKLQAFWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKISYPQQVAVACTGIIWSRY 63

Query: 41 NM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          ++    KNWNLFSVN AMA TGLYQLSRKI+Q+
Sbjct: 64 SLVITPKNWNLFSVNVAMAGTGLYQLSRKIRQD 96

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471895|ref|NP_001059546.1| Os07g0449100 [Oryza sativa Japonica Group] gi|33146465|dbj|BAC79573.1| light induced protein like protein [Oryza sativa Japonica Group] gi|113611082|dbj|BAF21460.1| Os07g0449100 [Oryza sativa Japonica Group] gi|125558180|gb|EAZ03716.1| hypothetical protein OsI_25849 [Oryza sativa Indica Group] gi|125600087|gb|EAZ39663.1| hypothetical protein OsJ_24091 [Oryza sativa Japonica Group] gi|215692874|dbj|BAG88294.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 64/95 (67%), Gaps = 26/95 (27%)

Query: 1  ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------S 38
          + +KL AFWNHPAGPKTIHFWAPTFKWGISIAN+ADF                      S
Sbjct: 1  MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 39 NYNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
           Y+M    KNWNLFSVN AMA TGLYQLSRKI+++
Sbjct: 61 RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKD 95

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476002|ref|NP_001061597.1| Os08g0344300 [Oryza sativa Japonica Group] gi|38637023|dbj|BAD03281.1| light induced protein like [Oryza sativa Japonica Group] gi|113623566|dbj|BAF23511.1| Os08g0344300 [Oryza sativa Japonica Group] gi|215768152|dbj|BAH00381.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 64/95 (67%), Gaps = 26/95 (27%)

Query: 1  ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------S 38
          + +KL AFWNHPAGPKTIHFWAPTFKWGISIAN+ADF                      S
Sbjct: 1  MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 39 NYNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
           Y+M    KNWNLFSVN AMA TGLYQLSRKI+++
Sbjct: 61 RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKD 95

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447839|ref|XP_003594195.1| hypothetical protein MTR_2g025480 [Medicago truncatula] gi|87162691|gb|ABD28486.1| Protein of unknown function UPF0041 [Medicago truncatula] gi|355483243|gb|AES64446.1| hypothetical protein MTR_2g025480 [Medicago truncatula] gi|388510262|gb|AFK43197.1| unknown [Medicago truncatula]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 63/94 (67%), Gaps = 26/94 (27%)

Query: 2  TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SN 39
          T+KL AFWNHPAGPKTIHFWAPTFKWGISIANIADF                      S 
Sbjct: 3  TSKLQAFWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTATGLIWSR 62

Query: 40 YNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          Y+     KNWNLF+VN AMA TGLYQLSRK++Q+
Sbjct: 63 YSTVITPKNWNLFAVNVAMAGTGLYQLSRKLRQD 96

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504592|ref|NP_001152041.1| brain protein 44 [Zea mays] gi|195652097|gb|ACG45516.1| brain protein 44 [Zea mays]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 62/93 (66%), Gaps = 26/93 (27%)

Query: 3  NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SNY 40
           KL AFWNHPAGPKTIHFWAPTFKWGI+IANIADF                      S Y
Sbjct: 4  TKLQAFWNHPAGPKTIHFWAPTFKWGITIANIADFAKPPEKISYPQQVAVACTGIIWSRY 63

Query: 41 NM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          ++    KNWNLFSVN AMA TGLYQLSRKI+Q+
Sbjct: 64 SLVITPKNWNLFSVNVAMAGTGLYQLSRKIRQD 96

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242045938|ref|XP_002460840.1| hypothetical protein SORBIDRAFT_02g036050 [Sorghum bicolor] gi|241924217|gb|EER97361.1| hypothetical protein SORBIDRAFT_02g036050 [Sorghum bicolor]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 63/95 (66%), Gaps = 26/95 (27%)

Query: 1  ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------S 38
          + +KL A WNHPAGPKTIHFWAPTFKWGISIAN+ADF                      S
Sbjct: 1  MASKLQALWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGIIWS 60

Query: 39 NYNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
           Y++    KNWNLFSVN AMA TGLYQLSRKI+Q+
Sbjct: 61 RYSLVITPKNWNLFSVNVAMASTGLYQLSRKIRQD 95

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235603|ref|NP_193962.1| uncharacterized protein [Arabidopsis thaliana] gi|11762164|gb|AAG40360.1|AF325008_1 AT4g22310 [Arabidopsis thaliana] gi|2832681|emb|CAA16781.1| putative protein [Arabidopsis thaliana] gi|7269077|emb|CAB79186.1| putative protein [Arabidopsis thaliana] gi|14532636|gb|AAK64046.1| unknown protein [Arabidopsis thaliana] gi|19310765|gb|AAL85113.1| unknown protein [Arabidopsis thaliana] gi|332659191|gb|AEE84591.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 62/94 (65%), Gaps = 26/94 (27%)

Query: 2  TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SN 39
          T+KL A WNHPAGPKTIHFWAPTFKWGISIANIADF                      S 
Sbjct: 3  TSKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSR 62

Query: 40 YNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          Y+M    KNWNLFSVN AMA TG+YQL+RKIK +
Sbjct: 63 YSMVINPKNWNLFSVNVAMAGTGIYQLARKIKHD 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497018|ref|NP_001141452.1| uncharacterized protein LOC100273562 [Zea mays] gi|194704632|gb|ACF86400.1| unknown [Zea mays] gi|195618440|gb|ACG31050.1| brain protein 44 [Zea mays] gi|413921043|gb|AFW60975.1| brain protein 44 [Zea mays]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 61/93 (65%), Gaps = 26/93 (27%)

Query: 3  NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SNY 40
           KL A WNHPAGPKTIHFWAPTFKWGISIANIADF                      S Y
Sbjct: 4  TKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKISYPQQVAVACTGLIWSRY 63

Query: 41 NM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          ++    +NWNLFSVN AMA TGLYQLSRKI+Q+
Sbjct: 64 SLVITPRNWNLFSVNVAMAGTGLYQLSRKIRQD 96

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803890|ref|XP_002869829.1| hypothetical protein ARALYDRAFT_492636 [Arabidopsis lyrata subsp. lyrata] gi|297315665|gb|EFH46088.1| hypothetical protein ARALYDRAFT_492636 [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 62/94 (65%), Gaps = 26/94 (27%)

Query: 2  TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF----------------------SN 39
          T+KL A WNHPAGPKTIHFWAPTFKWGISIANIADF                      S 
Sbjct: 3  TSKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSR 62

Query: 40 YNM----KNWNLFSVNFAMARTGLYQLSRKIKQN 69
          Y+M    KNWNLFSVN AMA TG+YQL+RKIK +
Sbjct: 63 YSMVINPKNWNLFSVNVAMAGTGIYQLARKIKHD 96

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2132095	108	AT4G22310 [Arabidopsis thalian	0.536	0.342	0.891	6.4e-26
TAIR|locus:505006463	109	AT4G14695 "AT4G14695" [Arabido	0.521	0.330	0.916	2.1e-25
TAIR|locus:2126583	146	AT4G05590 "AT4G05590" [Arabido	0.521	0.246	0.916	1.9e-24
ZFIN|ZDB-GENE-030131-330	127	mpc2 "mitochondrial pyruvate c	0.507	0.275	0.628	7.2e-15
UNIPROTKB|E2REX4	127	MPC2 "Uncharacterized protein"	0.550	0.299	0.526	2.1e-13
RGD|1563422	127	Mpc2 "mitochondrial pyruvate c	0.550	0.299	0.5	2.1e-13
ZFIN|ZDB-GENE-040912-107	144	zgc:103678 "zgc:103678" [Danio	0.507	0.243	0.571	4.2e-13
UNIPROTKB|E1BD64	127	BRP44 "Uncharacterized protein	0.550	0.299	0.5	4.2e-13
UNIPROTKB|O95563	127	MPC2 "Mitochondrial pyruvate c	0.550	0.299	0.5	4.2e-13
UNIPROTKB|F1RPU8	128	MPC2 "Uncharacterized protein"	0.550	0.296	0.5	4.2e-13

TAIR|locus:2132095 AT4G22310 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query:     2 TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             T+KL A WNHPAGPKTIHFWAPTFKWGISIANIADF+
Sbjct:     3 TSKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFA 39

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006096 "glycolysis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:505006463 AT4G14695 "AT4G14695" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query:     2 TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF 37
             T+KL A WNHPAGPKTIHFWAPTFKWGISIANIADF
Sbjct:     3 TSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADF 38

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2126583 AT4G05590 "AT4G05590" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query:     2 TNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADF 37
             T+KL A WNHPAGPKTIHFWAPTFKWGISIANIADF
Sbjct:     3 TSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADF 38

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

ZFIN|ZDB-GENE-030131-330 mpc2 "mitochondrial pyruvate carrier 2" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query:     4 KLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             KL  F+NHPAGPKT+ FWAP FKWG+ +A +AD +
Sbjct:    24 KLRPFYNHPAGPKTVFFWAPMFKWGLVLAGLADMA 58

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2REX4 MPC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 124 (48.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query:     1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             +  KL   +NHPAGPKT+ FWAP  KWG+  A +AD +
Sbjct:    24 LPEKLRPLYNHPAGPKTVFFWAPIMKWGLVCAGLADMA 61

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IEA

GO:0006850 "mitochondrial pyruvate transport" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1563422 Mpc2 "mitochondrial pyruvate carrier 2" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:     1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             +  KL   +NHPAGP+T+ FWAP  KWG+  A +AD +
Sbjct:    24 LPKKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMA 61

GO:0005622 "intracellular" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA;ISO

GO:0006850 "mitochondrial pyruvate transport" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IEA;ISO

ZFIN|ZDB-GENE-040912-107 zgc:103678 "zgc:103678" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query:     4 KLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             KL   +NHPAGPKT+ FWAP FKWG+  A  +D +
Sbjct:    40 KLRPVYNHPAGPKTVFFWAPVFKWGLVAAGFSDMT 74

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BD64 BRP44 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:     1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             +  KL   +NHPAGP+T+ FWAP  KWG+  A +AD +
Sbjct:    24 LPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMA 61

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IEA

GO:0006850 "mitochondrial pyruvate transport" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O95563 MPC2 "Mitochondrial pyruvate carrier 2" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:     1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             +  KL   +NHPAGP+T+ FWAP  KWG+  A +AD +
Sbjct:    24 LPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMA 61

GO:0016021 "integral to membrane" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006850 "mitochondrial pyruvate transport" evidence=IEA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RPU8 MPC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 121 (47.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:     1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFS 38
             +  KL   +NHPAGP+T+ FWAP  KWG+  A +AD +
Sbjct:    24 LPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMA 61

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IEA

GO:0006850 "mitochondrial pyruvate transport" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
pfam03650	120	pfam03650, UPF0041, Uncharacterized protein family	4e-14

>gnl|CDD|217658 pfam03650, UPF0041, Uncharacterized protein family (UPF0041)

 Score = 61.4 bits (149), Expect = 4e-14
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 26/84 (30%)

Query: 7  AFWNHPAGPKTIHFWAPTFKWGISIANIAD----------------------FSNYNM-- 42
           FWNH AGPKT+HFWAPT KWG+ +A + D                      ++ +++  
Sbjct: 8  RFWNHEAGPKTVHFWAPTLKWGLVLAGLGDLKRPPEKISGPQNSALLATSAIWTRWSLVV 67

Query: 43 --KNWNLFSVNFAMARTGLYQLSR 64
            KN+ L SVNF +  T   QL R
Sbjct: 68 KPKNYLLASVNFFLECTQGAQLGR 91

Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
KOG1589	118	consensus Uncharacterized conserved protein [Funct	100.0
PF03650	119	MPC: Uncharacterised protein family (UPF0041); Int	100.0
KOG1590	132	consensus Uncharacterized conserved protein [Funct	99.94

>KOG1589 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.6e-41  Score=223.04  Aligned_cols=67  Identities=60%  Similarity=1.085  Sum_probs=64.9

Q ss_pred             HHHHHHHcCCCCCcceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHHHH
Q 040024            3 NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFAMAR   56 (69)
Q Consensus         3 ~~~~~~~~~pagp~TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~~~   56 (69)
                      +++|++|||||||||||||||++|||||+|||+|++|+|                          ||||+|||||+|+++
T Consensus         8 ~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~   87 (118)
T KOG1589|consen    8 AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAI   87 (118)
T ss_pred             HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHH
Confidence            689999999999999999999999999999999999976                          999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 040024           57 TGLYQLSRKIKQN   69 (69)
Q Consensus        57 ~~~~ql~R~~~y~   69 (69)
                      +|+|||.|+++|+
T Consensus        88 tg~~QL~Ri~~y~  100 (118)
T KOG1589|consen   88 TGIYQLTRIANYQ  100 (118)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999983

>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function

Probab=100.00  E-value=5.7e-39  Score=214.39  Aligned_cols=69  Identities=52%  Similarity=0.916  Sum_probs=66.1

Q ss_pred             ChHHHHHHHcCCCCCcceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHH
Q 040024            1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFAM   54 (69)
Q Consensus         1 ~~~~~~~~~~~pagp~TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~   54 (69)
                      .++++|++||||+||||||||||++|||||||||+|++|+|                          ||||+||+||++|
T Consensus         2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~   81 (119)
T PF03650_consen    2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN   81 (119)
T ss_pred             hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence            36789999999999999999999999999999999999976                          9999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 040024           55 ARTGLYQLSRKIKQN   69 (69)
Q Consensus        55 ~~~~~~ql~R~~~y~   69 (69)
                      +++|+||++|+++|+
T Consensus        82 ~~~q~~Ql~R~~~y~   96 (119)
T PF03650_consen   82 ATTQLYQLYRKLNYQ   96 (119)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999985

>KOG1590 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=4.4e-28  Score=163.95  Aligned_cols=67  Identities=30%  Similarity=0.523  Sum_probs=62.5

Q ss_pred             HHHHHHHcCCCCCc---ceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHH
Q 040024            3 NKLLAFWNHPAGPK---TIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFA   53 (69)
Q Consensus         3 ~~~~~~~~~pagp~---TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~   53 (69)
                      .+++.+.+++-+++   |||||||++|||||||+|.||+++|                          ||||+||+||++
T Consensus         9 r~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~   88 (132)
T KOG1590|consen    9 RRFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHAT   88 (132)
T ss_pred             HHHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhh
Confidence            45678889999986   7999999999999999999999987                          999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 040024           54 MARTGLYQLSRKIKQN   69 (69)
Q Consensus        54 ~~~~~~~ql~R~~~y~   69 (69)
                      |+.+|++|++|.++|+
T Consensus        89 N~taQ~~Qg~Rf~~~~  104 (132)
T KOG1590|consen   89 NETAQLAQGSRFLNYN  104 (132)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00