Citrus Sinensis ID: 040053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS
Secondary Structure (PSIPRED)
ccccccEEEcccccEEEEcccHHHHHHHHHHHcccccccccccEEEEcccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccEEEEcccHHHHHHHHHHHHcccEccccccEEEEcccccEccccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
migpqplifghaaqfitvndyrfhpsvngwlerglvrpwggmigelevgdqftpfpflrpryigvnglhplans
Flexible Loop (DISEMBL)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS
Low Complexity Region (SEG)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS
Disordered region (IsUnstruct)
******LIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLH*****
Disordered Region (DISOPRED)
***PQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQ**PFPFLRPRYIGVNGLHP****
Disordered Region (DISEMBL)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS
Disordered Region (DISPRO)
***PQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNG*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
147823105	463	hypothetical protein VITISV_000600 [Viti	1.0	0.159	0.702	1e-23
296087896	518	unnamed protein product [Vitis vinifera]	1.0	0.142	0.702	5e-22
225463946	467	PREDICTED: uncharacterized protein LOC10	1.0	0.158	0.702	2e-21
224130614	496	predicted protein [Populus trichocarpa]	1.0	0.149	0.662	1e-20
414868817	266	TPA: hypothetical protein ZEAMMB73_11144	0.972	0.270	0.611	6e-18
414868815	210	TPA: hypothetical protein ZEAMMB73_11144	0.972	0.342	0.611	6e-18
414868816	384	TPA: hypothetical protein ZEAMMB73_11144	0.972	0.187	0.611	7e-18
226530158	505	uncharacterized protein LOC100272440 [Ze	0.972	0.142	0.611	7e-18
242086110	507	hypothetical protein SORBIDRAFT_08g02023	0.972	0.142	0.569	3e-17
449443231	545	PREDICTED: uncharacterized protein LOC10	0.972	0.132	0.547	2e-15

>gi|147823105|emb|CAN66332.1| hypothetical protein VITISV_000600 [Vitis vinifera]

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/74 (70%), Positives = 57/74 (77%)

Query: 1  MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRP 60
          MI PQ LIF HAAQF TV D RF   V+GWLE+GLV+ W GMIGELEVG QF P P L P
Sbjct: 5  MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPP 64

Query: 61 RYIGVNGLHPLANS 74
          RYIGVNG+ PLA+S
Sbjct: 65 RYIGVNGMRPLADS 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/74 (70%), Positives = 57/74 (77%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRP 60
           MI PQ LIF HAAQF TV D RF   V+GWLE+GLV+ W GMIGELEVG QF P P L P
Sbjct: 117 MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPP 176

Query: 61  RYIGVNGLHPLANS 74
           RYIGVNG+ PLA+S
Sbjct: 177 RYIGVNGMRPLADS 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 57/74 (77%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRP 60
           MI PQ LIF HAAQF TV D RF   V+GWLE+GLV+ W GMIGELEVG QF P P L P
Sbjct: 117 MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPP 176

Query: 61  RYIGVNGLHPLANS 74
           RYIGVNG+ PLA+S
Sbjct: 177 RYIGVNGMRPLADS 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRP 60
           +I PQPLIF HAAQF TV+D RF   V+ WLE+GLVR W G+IGELEVG QF PFP   P
Sbjct: 141 VIDPQPLIFDHAAQFFTVSDPRFSELVDDWLEKGLVRQWQGIIGELEVGGQFLPFPSSTP 200

Query: 61  RYIGVNGLHPLANS 74
           RYI VNG+  LA+S
Sbjct: 201 RYISVNGMRSLADS 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868817|tpg|DAA47374.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 52/72 (72%)

Query: 3   GPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRY 62
           G + L+F HAAQF T +D RF   VN WL+RGLVR W G+IGELE G  F P P L PRY
Sbjct: 118 GGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVREWSGLIGELEAGGCFRPIPSLTPRY 177

Query: 63  IGVNGLHPLANS 74
           IGVNG+ PLA++
Sbjct: 178 IGVNGMRPLADA 189

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868815|tpg|DAA47372.1| TPA: hypothetical protein ZEAMMB73_111446 [Zea mays]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 52/72 (72%)

Query: 3   GPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRY 62
           G + L+F HAAQF T +D RF   VN WL+RGLVR W G+IGELE G  F P P L PRY
Sbjct: 118 GGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVREWSGLIGELEAGGCFRPIPSLTPRY 177

Query: 63  IGVNGLHPLANS 74
           IGVNG+ PLA++
Sbjct: 178 IGVNGMRPLADA 189

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868816|tpg|DAA47373.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 52/72 (72%)

Query: 3   GPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRY 62
           G + L+F HAAQF T +D RF   VN WL+RGLVR W G+IGELE G  F P P L PRY
Sbjct: 118 GGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVREWSGLIGELEAGGCFRPIPSLTPRY 177

Query: 63  IGVNGLHPLANS 74
           IGVNG+ PLA++
Sbjct: 178 IGVNGMRPLADA 189

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226530158|ref|NP_001140386.1| uncharacterized protein LOC100272440 [Zea mays] gi|223973745|gb|ACN31060.1| unknown [Zea mays]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 52/72 (72%)

Query: 3   GPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRY 62
           G + L+F HAAQF T +D RF   VN WL+RGLVR W G+IGELE G  F P P L PRY
Sbjct: 118 GGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVREWSGLIGELEAGGCFRPIPSLTPRY 177

Query: 63  IGVNGLHPLANS 74
           IGVNG+ PLA++
Sbjct: 178 IGVNGMRPLADA 189

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242086110|ref|XP_002443480.1| hypothetical protein SORBIDRAFT_08g020230 [Sorghum bicolor] gi|241944173|gb|EES17318.1| hypothetical protein SORBIDRAFT_08g020230 [Sorghum bicolor]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 3   GPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRY 62
           G + L+F HAAQF T +D RF   V+ WL+RGLVR W G++GELE G +F   P L PRY
Sbjct: 152 GGEQLVFDHAAQFFTASDERFQSMVDEWLDRGLVREWSGLVGELEAGGRFRAIPSLTPRY 211

Query: 63  IGVNGLHPLANS 74
           IGVNG+ PLA++
Sbjct: 212 IGVNGMRPLADA 223

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 2   IGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPR 61
           +GP+PL+F HAAQF TV D +F   V+GWL   LV+ W G +GELE+G +F P     PR
Sbjct: 145 LGPEPLMFDHAAQFFTVTDNQFAQLVDGWLAADLVKEWKGTVGELELGGRFVPMSSC-PR 203

Query: 62  YIGVNGLHPLANS 74
           YIG NG+ PLA+S
Sbjct: 204 YIGTNGMRPLADS 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	1.0	0.152	0.573	3.3e-17

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 43/75 (57%), Positives = 52/75 (69%)

Query:     1 MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRP 60
             +I PQ LIF HAAQF T +D RF   V+GWLE+GLVR W G +GELE+G  F+ FP   P
Sbjct:   136 IIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGLVREWKGAVGELEIGGSFSQFPSSSP 195

Query:    61 -RYIGVNGLHPLANS 74
              RYI  NG+  LA+S
Sbjct:   196 PRYIAANGMRSLADS 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.149   0.504    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  12 22  0.36    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  416 (44 KB)
  Total size of DFA:  73 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.38u 0.18s 5.56t   Elapsed:  00:00:00
  Total cpu time:  5.38u 0.18s 5.56t   Elapsed:  00:00:00
  Start:  Fri May 10 00:38:15 2013   End:  Fri May 10 00:38:15 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	0.001

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 9   FGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGL 68
           F H AQ+    D  F  +V    + GLV  W   +     GD   P     P Y+G  G+
Sbjct: 50  FDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFT-GDGSPPRGDEDP-YVGEPGM 107

Query: 69  HPLANS 74
             LA  
Sbjct: 108 SALAKF 113

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.74
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	89.01
PF15320	81	RAM: mRNA cap methylation, RNMT-activating mini pr	80.38

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.74  E-value=9.3e-19  Score=122.20  Aligned_cols=68  Identities=26%  Similarity=0.366  Sum_probs=57.7

Q ss_pred             CCcccccCCceeEeCCCchHHHHHHHHHcCceeccCCceeeeecCCcccCCCCCCCcEEeCCCCCccccC
Q 040053            5 QPLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLANS   74 (74)
Q Consensus         5 ~~~~~DhGAQyfta~~~~f~~~v~~~~~~G~v~~W~~~~~~~~~~~~~~~~~~~~~ryVg~pgM~al~k~   74 (74)
                      +++.||||||||+++++.|.++|+.|.++|+|.+|+..++++..++ .++..++.+ |||.|||++|+|+
T Consensus        46 ~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~-~~~~~d~~p-yvg~pgmsalak~  113 (331)
T COG3380          46 DGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG-SPPRGDEDP-YVGEPGMSALAKF  113 (331)
T ss_pred             CCccccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC-CCCCCCCCc-cccCcchHHHHHH
Confidence            3567999999999999999999999999999999999888887665 333333343 9999999999984

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=89.01  E-value=0.24  Score=27.37  Aligned_cols=26  Identities=8%  Similarity=0.005  Sum_probs=19.3

Q ss_pred             CCcccccCCceeEeC--CCchHHHHHHH
Q 040053            5 QPLIFGHAAQFITVN--DYRFHPSVNGW   30 (74)
Q Consensus         5 ~~~~~DhGAQyfta~--~~~f~~~v~~~   30 (74)
                      ++..+|+|+.+|...  .+.+.+++++|
T Consensus        41 ~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen   41 PGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            348899999999884  47787877764

...

>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein

Probab=80.38  E-value=0.58  Score=27.37  Aligned_cols=27  Identities=19%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             eEeCCCchHHHHH-HHHHcCceeccCCc
Q 040053           16 ITVNDYRFHPSVN-GWLERGLVRPWGGM   42 (74)
Q Consensus        16 fta~~~~f~~~v~-~~~~~G~v~~W~~~   42 (74)
                      ||..+++|+++++ +...-=||.+|..+
T Consensus        11 fTe~D~ey~~~~~~~~~~PPIV~~W~~r   38 (81)
T PF15320_consen   11 FTEDDEEYMEYCKRPFPPPPIVEPWNSR   38 (81)
T ss_pred             ccccCHHHHHHHhCCCCCCCEecCcccC
Confidence            8999999999997 56777899999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.58
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.25

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.04  E-value=4.4e-06  Score=56.35  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             CCcccccCCceeEeCCC---chHHHHHHHHHcCceeccCCceeeeecCCcccCCCCCCCcEEeCCCCCcccc
Q 040053            5 QPLIFGHAAQFITVNDY---RFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLHPLAN   73 (74)
Q Consensus         5 ~~~~~DhGAQyfta~~~---~f~~~v~~~~~~G~v~~W~~~~~~~~~~~~~~~~~~~~~ryVg~pgM~al~k   73 (74)
                      ....+|||++||+++++   .|.++++.|.+.|++.+|........       ..+...+|+..+||++|.+
T Consensus        52 ~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~l~~  116 (342)
T 3qj4_A           52 PQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV-------MKEGDCNFVAPQGISSIIK  116 (342)
T ss_dssp             TTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC-------C--CCEEEECTTCTTHHHH
T ss_pred             CCceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhccee-------ccCCccceecCCCHHHHHH
Confidence            45679999999999987   89999999999999999987543221       1234568999999998865

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.25  E-value=0.0083  Score=36.26  Aligned_cols=63  Identities=27%  Similarity=0.561  Sum_probs=44.3

Q ss_pred             CcccccCCceeEeCCCchHHHHHHHHHcCceeccCCceeeeecCCcccCCCCCCCcEEeCCCCC
Q 040053            6 PLIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGELEVGDQFTPFPFLRPRYIGVNGLH   69 (74)
Q Consensus         6 ~~~~DhGAQyfta~~~~f~~~v~~~~~~G~v~~W~~~~~~~~~~~~~~~~~~~~~ryVg~pgM~   69 (74)
                      +..+|||+|||+++++.|...+..+...+....+...+....... .........++.+..++.
T Consensus        48 ~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  110 (336)
T 3kkj_A           48 AGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGR-LSPSPDEQVRWVGKPGMS  110 (336)
T ss_dssp             TEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEESSSB-CCCCCTTSCEEEESSSTH
T ss_pred             CceeecCccccccCcHHHHHHHHHHHhcccccccccccccccccc-ccccccccceeecccccc
Confidence            457999999999999999999999999999988887665543322 111122344565555543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	82.06

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.06  E-value=0.17  Score=29.61  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=21.7

Q ss_pred             CCcccccCCceeEeCCCchHHHHHHH
Q 040053            5 QPLIFGHAAQFITVNDYRFHPSVNGW   30 (74)
Q Consensus         5 ~~~~~DhGAQyfta~~~~f~~~v~~~   30 (74)
                      ++..+|+|+++|+...+.+.++++++
T Consensus        46 ~g~~~d~G~~~~~~~~~~~~~~~~~~   71 (373)
T d1seza1          46 DGLIWDEGANTMTESEGDVTFLIDSL   71 (373)
T ss_dssp             TTEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred             CCEEEecCceEEeCCCHHHHHHHHHh
Confidence            35679999999999888888887764