Citrus Sinensis ID: 040067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
SLLVSSNSVPFHSSRTLLTQLQGLRIKAKKHRNLGAIRASEADSSTTTTTTSTDVAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDTVEAPSKTEESEEKGDSPPLSSAKS
ccccccccccccccccHHHHHHcHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEccccEEEccccccccEEEccccccccccEEEEEccEEEEEEccccccEEEccEEcccccEEEcccccEEEEccEEEEEEEEEcccccccccccccccccccccccccccc
cEEEEcccccccccccccccccccEEEEcccccccEEEccHHccccccccccccccccEEEEEEcccccccccccEccccccEEEcccEEEEEcccccccEEEccccccccEEEEEEcccEEEEEEccccccEEEcccEcccccEEEcccccEEEEccccEEEEEEEEEcccccccccccHHHccccccHHcccc
sllvssnsvpfhssrTLLTQLQGLRIKakkhrnlgairaseadssttttttstdvAAERwllqpvgdgdtshigfkvpmpdafeiastevtvgrlperadmvipvatVSGLHARIQkkgdsllvtdldstngtfidekrlrsgvvavaspgsritfgdthlAMFRvskidtveapskteeseekgdspplssaks
sllvssnsvpfhssrtllTQLQGLRIkakkhrnlgairaseadssttttttstdvaaerWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVsglhariqkkgdsllvtdldstngtfidekrlrsgvvavaspgsritfgdthlAMFRVSKIdtveapskteeseekgdspplssaks
SLLVSSNSVPFHSSRTLLTQLQGLRIKAKKHRNLGAIRASEADssttttttstDVAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDTVEAPSKTEESEEKGDSPPLSSAKS
**********************************************************RWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKI**************************
*******SVPFHSSRTLLTQ***************************************WLLQPVGDGD*******VPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFR******************************
**********FHSSRTLLTQLQGLRIKAKKHRNLGAIR**************TDVAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDTV***********************
SLLVSSNSVPFHSSRTLLTQLQGLRIKAKKHRNLGAIRAS*************DVAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDT************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SLLVSSNSVPFHSSRTLLTQLQGLRIKAKKHRNLGAIRASEADSSTTTTTTSTDVAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDTVEAPSKTEESEEKGDSPPLSSAKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
Q40412663 Zeaxanthin epoxidase, chl N/A no 0.738 0.217 0.303 3e-07
P93236669 Zeaxanthin epoxidase, chl N/A no 0.733 0.213 0.284 0.0001
>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1 Back     alignment and function desciption
 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 14/158 (8%)

Query: 37  IRASEADSSTTTTTTSTDVAAER-----WLLQPVGDGDTSHIGFKVPMPDAFEIASTEVT 91
            R SE  +         D A ER     WLL P G+ + +     +   +        V+
Sbjct: 504 CRLSEKANDQLRNWFEDDDALERATDAEWLLLPAGNSNAALETLVLSRDENMPCNIGSVS 563

Query: 92  VGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFI---DEKRLRS--GVVA 146
              +P ++ +VIP+  VS +HARI  KG +  VTDL S +GT+I   + +R R+      
Sbjct: 564 HANIPGKS-VVIPLPQVSEMHARISYKGGAFFVTDLRSEHGTWITDNEGRRYRASPNFPT 622

Query: 147 VASPGSRITFGDTHLAMFRVSKIDTVEAPSKTEESEEK 184
              P   I FG    A FRV     ++ P KT   EE+
Sbjct: 623 RFHPSDIIEFGSDKKAAFRVK---VMKFPPKTAAKEER 657
Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.
Nicotiana plumbaginifolia (taxid: 4092)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 9EC: 0
>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
118489264220 unknown [Populus trichocarpa x Populus d 0.897 0.795 0.704 3e-64
224104933220 predicted protein [Populus trichocarpa] 0.917 0.813 0.693 1e-63
255571479219 conserved hypothetical protein [Ricinus 0.912 0.812 0.661 4e-60
363807914222 uncharacterized protein LOC100808269 [Gl 0.902 0.792 0.632 8e-55
296083965 1195 unnamed protein product [Vitis vinifera] 0.892 0.145 0.595 1e-53
225436005208 PREDICTED: zeaxanthin epoxidase, chlorop 0.892 0.836 0.595 2e-53
357443911227 Zeaxanthin epoxidase [Medicago truncatul 0.907 0.779 0.575 7e-48
357462097228 Zeaxanthin epoxidase [Medicago truncatul 0.892 0.763 0.574 9e-47
449463863183 PREDICTED: zeaxanthin epoxidase, chlorop 0.661 0.704 0.682 3e-44
297821347204 forkhead-associated domain-containing pr 0.810 0.774 0.553 4e-42
>gi|118489264|gb|ABK96437.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/183 (70%), Positives = 147/183 (80%), Gaps = 8/183 (4%)

Query: 3   LVSSNSVPFHSSRTLLTQLQGLRIKAKKHRNLGAIRASEADSSTTTTTTSTDVAAERWLL 62
           L++ NS+ F S +   TQLQG+RIKAKK R+LGA+ AS ADS      T TDV  ERWLL
Sbjct: 31  LLAHNSITFQSPKNFFTQLQGVRIKAKKQRSLGAVHASGADS------TLTDVE-ERWLL 83

Query: 63  QPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSL 122
            PVGDGD+ HIGFKV MPDAFEIAS+EVTVGRLP++ADMVIPVATVS LHARIQ KG +L
Sbjct: 84  VPVGDGDSGHIGFKVKMPDAFEIASSEVTVGRLPDKADMVIPVATVSALHARIQNKGGNL 143

Query: 123 LVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKIDTVE-APSKTEES 181
           +VTDLDSTNGTFID+KRL  G     SPGSRITFGDTHLAMF VSK+  VE APSK+EES
Sbjct: 144 VVTDLDSTNGTFIDKKRLPPGASVSVSPGSRITFGDTHLAMFLVSKLAKVESAPSKSEES 203

Query: 182 EEK 184
           ++K
Sbjct: 204 QDK 206

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224104933|ref|XP_002313623.1| predicted protein [Populus trichocarpa] gi|222850031|gb|EEE87578.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571479|ref|XP_002526687.1| conserved hypothetical protein [Ricinus communis] gi|223533987|gb|EEF35709.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|363807914|ref|NP_001242194.1| uncharacterized protein LOC100808269 [Glycine max] gi|255640338|gb|ACU20457.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|296083965|emb|CBI24353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436005|ref|XP_002273249.1| PREDICTED: zeaxanthin epoxidase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|357443911|ref|XP_003592233.1| Zeaxanthin epoxidase [Medicago truncatula] gi|355481281|gb|AES62484.1| Zeaxanthin epoxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357462097|ref|XP_003601330.1| Zeaxanthin epoxidase [Medicago truncatula] gi|355490378|gb|AES71581.1| Zeaxanthin epoxidase [Medicago truncatula] gi|388521581|gb|AFK48852.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449463863|ref|XP_004149650.1| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cucumis sativus] gi|449514907|ref|XP_004164512.1| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297821347|ref|XP_002878556.1| forkhead-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324395|gb|EFH54815.1| forkhead-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
TAIR|locus:2050034209 AT2G21530 "AT2G21530" [Arabido 0.794 0.741 0.55 1.3e-38
UNIPROTKB|O53145381 MT3428 "Regulator protein" [My 0.369 0.188 0.382 0.00012
TAIR|locus:2050034 AT2G21530 "AT2G21530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 88/160 (55%), Positives = 112/160 (70%)

Query:    20 QLQGLRIKAKKHRNLG-AIRASEADXXXXXXXXXXDVAAERWLLQPVGDGDTSHIGFKVP 78
             Q+  +   AKK R+    +R + A               ERWLL+PVGDGDT HIG+KV 
Sbjct:    49 QISNISFIAKKPRSHAPVVRTTRASLDENQSPTS---GGERWLLKPVGDGDTRHIGYKVA 105

Query:    79 MPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEK 138
             MP  FEI+S +VT+GRLPE+AD+VIPVATVSG+HA I     +LLVTD++STNGTFI++K
Sbjct:   106 MPAPFEISSGQVTIGRLPEKADVVIPVATVSGVHATINTNEKNLLVTDMNSTNGTFIEDK 165

Query:   139 RLRSGVVAVASPGSRITFGDTHLAMFRVSKI-DTVEAPSK 177
             RL  GV A A PG+RITFGDT+LA+FRV K+ D+ E+  K
Sbjct:   166 RLIPGVAAPAFPGTRITFGDTNLAIFRVFKLQDSEESIEK 205
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
UNIPROTKB|O53145 MT3428 "Regulator protein" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 3e-17
pfam0049867 pfam00498, FHA, FHA domain 5e-15
smart0024052 smart00240, FHA, Forkhead associated domain 3e-10
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 9e-10
TIGR03354 396 TIGR03354, VI_FHA, type VI secretion system FHA do 2e-06
PLN02927668 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa 8e-04
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 73.2 bits (180), Expect = 3e-17
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 87  STEVTVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVV 145
               T+GR  +  D+V+   +VS  HA I+  GD  +++ DL STNGTF++ +R+  G  
Sbjct: 21  GGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGEP 80

Query: 146 AVASPGSRITFGDTHLAMFRVSK 168
                G  I  G+T ++ FR   
Sbjct: 81  VRLRDGDVIRLGNTSIS-FRFES 102

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.84
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.78
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.71
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.66
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.58
COG3456 430 Predicted component of the type VI protein secreti 99.47
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.45
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.4
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 99.22
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 98.92
KOG1880 337 consensus Nuclear inhibitor of phosphatase-1 [Gene 98.86
TIGR02500 410 type_III_yscD type III secretion apparatus protein 98.46
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 98.46
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 98.39
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 98.06
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 97.54
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 96.47
PRK15367 395 type III secretion system protein SsaD; Provisiona 90.65
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information 
Probab=99.84  E-value=2.9e-20  Score=125.78  Aligned_cols=67  Identities=43%  Similarity=0.719  Sum_probs=63.1

Q ss_pred             EEEcCCCCCCCEEeCCCCcCccceEEEEECC-EEEEEeCCCCCceEECCEEccCCceEECCCCCEEEEC
Q 040067           90 VTVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFG  157 (195)
Q Consensus        90 ~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~-~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG  157 (195)
                      ++|||++. |||+|+++.||+.||.|.++++ .|+|+|++|+|||||||+++.++.++.|++||+|+||
T Consensus         1 ~~iGR~~~-~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G   68 (68)
T PF00498_consen    1 VTIGRSPD-CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG   68 (68)
T ss_dssp             EEEESSTT-SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred             CEEcCCCC-CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence            58999988 9999999999999999999998 9999999999999999999999999999999999998

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK15367 type III secretion system protein SsaD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
2fez_A388 Mycobacterium Tuberculosis Embr Length = 388 6e-04
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr Length = 388 Back     alignment and structure 
Iteration: 1

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 83  FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRS 142
           + + +    +GRL +  D+V+  A VS  HA I   G + ++ DL S+NG  +  +R+RS
Sbjct: 301 YPLQAAATRIGRLHDN-DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRS 359
Query: 143 GVVAVASPGSRITFGDTHLAMFRVS 167
            V    + G  I   D H   F++S
Sbjct: 360 AV--TLNDGDHIRICD-HEFTFQIS 381

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 1e-19
3po8_A100 RV0020C protein, putative uncharacterized protein 1e-17
2xt9_B115 Putative signal transduction protein GARA; lyase-s 2e-17
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 2e-17
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 3e-17
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-16
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 2e-16
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 6e-16
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 8e-16
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-15
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 3e-15
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 8e-15
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 2e-14
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 3e-14
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 2e-13
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 1e-12
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 3e-12
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 4e-12
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 4e-11
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 7e-11
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 1e-09
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 2e-09
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 7e-09
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 2e-08
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 4e-07
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 9e-07
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 2e-06
2g1l_A104 Kinesin-like protein KIF1C; transport, FHA domain, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
 Score = 79.1 bits (195), Expect = 1e-19
 Identities = 19/82 (23%), Positives = 34/82 (41%)

Query: 86  ASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVV 145
             + + VGR+    ++ I  A +S  H RI+    + ++ DL S+NGT ++   L     
Sbjct: 31  PGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDPETS 90

Query: 146 AVASPGSRITFGDTHLAMFRVS 167
                G  I  G+    +    
Sbjct: 91  VNLGDGDVIKLGEYTSILVNFV 112
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, kines transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2 Length = 104 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.92
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.91
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.9
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.9
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.89
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.89
3po8_A100 RV0020C protein, putative uncharacterized protein 99.89
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.89
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.88
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.87
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.87
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.87
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.87
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.86
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.86
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.85
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.85
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.84
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.84
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.84
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.84
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.83
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.83
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.82
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.81
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.79
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.77
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.76
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.7
4a0e_A123 YSCD, type III secretion protein; transport protei 99.69
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.55
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.49
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.42
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.42
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 99.32
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.31
1wv3_A238 Similar to DNA segregation ATPase and related prot 99.14
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 99.14
1wv3_A 238 Similar to DNA segregation ATPase and related prot 85.65
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
Probab=99.92  E-value=1.5e-24  Score=164.44  Aligned_cols=94  Identities=24%  Similarity=0.420  Sum_probs=82.5

Q ss_pred             CCEEEEEccCCCcceecccCCCCceEEECC-CeEEEcCCCCCCCEEeCCCCcCccceEEEE-----------ECCEEEEE
Q 040067           58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAS-TEVTVGRLPERADMVIPVATVSGLHARIQK-----------KGDSLLVT  125 (195)
Q Consensus        58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~-~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~-----------~~~~~~l~  125 (195)
                      ..|.|++..+|...         ..+.|.. ..++|||+++ |||+|+++.|||+||.|.+           .++.|+|+
T Consensus        19 ~~~~L~v~k~g~~~---------~~~~L~~~~~~~IGR~~~-~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~   88 (130)
T 4h87_A           19 APYSLETLKGGTIL---------GTRSLKGTSYCLFGRLSG-CDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLY   88 (130)
T ss_dssp             SCCEEEEEETTEEE---------EEEECTTCSEEEEESSTT-SSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEE
T ss_pred             CCEEEEEEECCeee---------eeEEeCCCceEEEcCCcC-CCEEeCCCCcchhcEEEEEecccCccceeccCCcceEe
Confidence            46999998888765         5678875 4589999998 9999999999999999975           34679999


Q ss_pred             eCCCCCceEECCEEccCCceEECCCCCEEEECCceE
Q 040067          126 DLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHL  161 (195)
Q Consensus       126 Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~  161 (195)
                      |++|+|||||||++|.++.++.|++||+|+||....
T Consensus        89 Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str  124 (130)
T 4h87_A           89 DLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTR  124 (130)
T ss_dssp             ECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSE
T ss_pred             eCCCCCceEECCEECCCCceeECCCCCEEEECCceE
Confidence            999999999999999998899999999999999765
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 3e-15
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 3e-13
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 2e-11
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 2e-10
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 3e-10
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 6e-10
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 4e-09
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 8e-09
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 3e-07
d1lgpa_113 b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { 3e-05
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 66.6 bits (162), Expect = 3e-15
 Identities = 19/82 (23%), Positives = 34/82 (41%)

Query: 86  ASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVV 145
             + + VGR+    ++ I  A +S  H RI+    + ++ DL S+NGT ++   L     
Sbjct: 31  PGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDPETS 90

Query: 146 AVASPGSRITFGDTHLAMFRVS 167
                G  I  G+    +    
Sbjct: 91  VNLGDGDVIKLGEYTSILVNFV 112
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.91
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.9
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.87
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.87
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.86
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.8
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.79
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.78
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.77
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.77
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.76
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=3.9e-24  Score=153.17  Aligned_cols=93  Identities=28%  Similarity=0.531  Sum_probs=82.8

Q ss_pred             CCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECC
Q 040067           58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDE  137 (195)
Q Consensus        58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg  137 (195)
                      ..++|.....|            +.|+|.+..++|||.++ |||+|+++.||++||.|.++++.|+|+|++|+|||||||
T Consensus         5 ~~~~l~~~~~G------------~~~~l~~~~~~IGR~~~-~di~l~d~~VSr~Ha~i~~~~~~~~i~Dl~S~nGt~vNg   71 (99)
T d2ff4a3           5 AVAYLHDIASG------------RGYPLQAAATRIGRLHD-NDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQH   71 (99)
T ss_dssp             CCCEEEETTTC------------CEEECCSSEEEEESSTT-SSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETT
T ss_pred             cEEEEEcCCCC------------CEEEECCCCEEEeeCcC-CCEEECCccccceeEEEEEeCCEEEEEECCCcCCCeECC
Confidence            34566655554            56999999999999998 999999999999999999999999999999999999999


Q ss_pred             EEccCCceEECCCCCEEEECCceEEEEEe
Q 040067          138 KRLRSGVVAVASPGSRITFGDTHLAMFRV  166 (195)
Q Consensus       138 ~~l~~~~~~~L~~gd~I~lG~~~~~~~~~  166 (195)
                      ++|..  +..|++||+|+||...+ .|++
T Consensus        72 ~~i~~--~~~L~~Gd~i~iG~~~~-~f~~   97 (99)
T d2ff4a3          72 ERIRS--AVTLNDGDHIRICDHEF-TFQI   97 (99)
T ss_dssp             EECSS--EEEECTTCEEEETTEEE-EEEC
T ss_pred             EEcCC--ceECCCCCEEEECCEEE-EEEE
Confidence            99975  68999999999999988 5654
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure