Citrus Sinensis ID: 040073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccEHHHccccEEEEccccccHHHHHHHHHHcccccccccccccccccHHccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHcccccc
Coil and Loop (DISEMBL)
meeievpahflcpislqlmrdpvtvstgitydRVNIERWLFtcknntcpvtkqvlqetdltsttpnhTLRRLIQAWCTInachgieriptpqppvdkTQIVKILNdakkspstgrkCLRRLRSITLQSERNRSCLEAAGAIEFLATIItksdagsdecDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFevadpfqlisVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCpwgrnrikavegGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNArawrdspcvpahllssypss
Flexible Loop (DISEMBL)
MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLqetdltsttpnhTLRRLIQAWCTINACHgieriptpqppvdKTQIVKIlndakkspstgrkclrrlrsitlqsernrSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRikavegggvSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLqvdasvktkeRAREILKlnarawrdspcvpahllssypss
Low Complexity Region (SEG)
MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEgggvsvlvdllldvTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS
Disordered region (IsUnstruct)
*****VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPT*******TQIVKIL************CLRRLRSITLQ**RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAH********
Disordered Region (DISOPRED)
*EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLA*************DEALSILYHLNVSESYL***V*NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCL*************AREILKLNAR*************SSY***
Disordered Region (DISEMBL)
MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS
Disordered Region (DISPRO)
**EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINAC**********PPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
Q84TG3	411	E3 ubiquitin-protein liga	yes	no	0.980	0.970	0.568	1e-131
Q9SVC6	435	E3 ubiquitin-protein liga	no	no	0.982	0.919	0.536	1e-129
Q9SF15	456	E3 ubiquitin-protein liga	no	no	0.970	0.866	0.386	2e-72
Q9LT79	421	U-box domain-containing p	no	no	0.938	0.907	0.359	6e-52
Q9FXA4	421	U-box domain-containing p	no	no	0.938	0.907	0.333	9e-46
Q9C8D1	431	U-box domain-containing p	no	no	0.909	0.858	0.306	7e-41
Q5PNY6	435	U-box domain-containing p	no	no	0.872	0.816	0.304	5e-39
Q9LXE3	409	U-box domain-containing p	no	no	0.896	0.892	0.312	1e-33
Q8GUG9	612	U-box domain-containing p	no	no	0.886	0.589	0.295	2e-33
Q9LSA6	415	U-box domain-containing p	no	no	0.950	0.932	0.296	3e-31

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/408 (56%), Positives = 310/408 (75%), Gaps = 9/408 (2%)

Query: 2   EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLT 61
           EEIE+P  FLCPISL++M+DPV VSTGITYDR +IE+WLF  K N+CPVTKQ + + DLT
Sbjct: 8   EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLT 67

Query: 62  STTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRL 121
              PNHTLRRLIQ+WCT+NA +G+ERIPTP+PP+ K++I K++ D+  S     KCL+RL
Sbjct: 68  ---PNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRL 124

Query: 122 RSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN 181
           R I  ++  N+ CLEAAG  EFLA I++         DEAL++LYHL  SE+ LK+++ N
Sbjct: 125 RQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNN 184

Query: 182 NGEE-FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH 240
             +   ++SL ++++ G Y+SR YA +LLK+I EVADP Q +++K E FTE+V +L D  
Sbjct: 185 KKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDD-- 242

Query: 241 QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLD---VTERRVCELMLNVLD 297
           + SQ+A+KAA+ +LV +CPWGRNR KAVE G +SV+++LL+D    +ERR  E+ + VLD
Sbjct: 243 RISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLD 302

Query: 298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV 357
           LLC+CAEGRAE L HGA +AVV KKILRVS  ASDRAVR+L SV +F AT  +L EMLQ+
Sbjct: 303 LLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQL 362

Query: 358 GVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
           GVV+KLCLVLQV    KTKE+A+E+LKL+AR W+DSPC+P +++ +YP
Sbjct: 363 GVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCLPKNMILAYP 410

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/438 (53%), Positives = 317/438 (72%), Gaps = 38/438 (8%)

Query: 2   EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLT 61
           +EIE+P+ FLCPISL +M+DPV VSTGITYDR +IE+WLF+ K N+CPVTKQV+ ETDLT
Sbjct: 3   QEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDLT 62

Query: 62  STTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRL 121
              PNHTLRRLIQ+WCT+NA +GIERIPTP+PP+ K++I K++ ++  S     KCL+RL
Sbjct: 63  ---PNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSSSHLNQVKCLKRL 119

Query: 122 RSITLQSERNRSCLEAAGAIEFLATIITKS-----------------------------D 152
           R I  ++  N+ CLEAA   EFLA I++ S                             D
Sbjct: 120 RQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFD 179

Query: 153 AGSDECDEALSILYHLNVSESYLKSIVINN-GEEFLESLMRVLKCGNYQSRSYAIMLLKS 211
           +     DEALS+LYHL+ SE+ LKS++ N  G   +++L ++++ G Y+SR+YA +LLK 
Sbjct: 180 SSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYESRAYAALLLKK 239

Query: 212 IFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271
           + EVADP Q+I +++E F E++ +L  H Q S +A+++A+++LV  CPWGRNR KAVEGG
Sbjct: 240 LLEVADPMQIILLERELFGEVIQIL--HDQISHKATRSAMQILVITCPWGRNRHKAVEGG 297

Query: 272 GVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH 328
            +S++++LL+D T   ERR  E+ + VLD+LC+CAEGRAE L HGA +AVVSKKILRVS 
Sbjct: 298 TISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQ 357

Query: 329 AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388
             S+RAVR+L SV +F AT  +LQEMLQ+GVV+KLCLVLQV    KTKE+A+E+LKL+AR
Sbjct: 358 ITSERAVRVLLSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHAR 417

Query: 389 AWRDSPCVPAHLLSSYPS 406
            WR+SPCVP +L  SYP+
Sbjct: 418 VWRESPCVPRNLYDSYPA 435

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1

 Score =  273 bits (699), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/445 (38%), Positives = 249/445 (55%), Gaps = 50/445 (11%)

Query: 2   EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ-ETDL 60
           EEIE+P +F+CPISL++M+DPVT  +GITYDR NI +WL   K  +CPVTKQ L  ++DL
Sbjct: 6   EEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLE--KVPSCPVTKQPLPLDSDL 63

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKK--SPSTGRK-C 117
           T   PNH LRRLIQ WC  N   G+ RI TP+ P  K  +V+ + + KK    + GR+  
Sbjct: 64  T---PNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREET 120

Query: 118 LRRLRSITLQSERNR---SCLEAAGAIEFLATIITKSDAGSDEC---DEALSILYHLNVS 171
           L++L  + +     R    C      I F+    ++ + G       DE+L +L+ + + 
Sbjct: 121 LQKLEVLAMDGNNRRLMCECGVHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLHLIGIP 180

Query: 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTE 231
            +  K+I++ N +  +ESL  VL   ++ S++Y I+LL+++ E      +  +  E F  
Sbjct: 181 SNDAKTILMEN-DRVMESLTWVLHQEDFLSKAYTIVLLRNLTEYTSSHIVERLNPEIFKG 239

Query: 232 IVNVLRD---------------------------------HHQFSQQASKAALKLLVELC 258
           I+  L+D                                 H    +QA  AAL +L+E  
Sbjct: 240 IIGFLKDVVNSVNRTSPTVRETVQSSSRPSLGKTEPSKLDHSLVIKQAVTAALMILLETS 299

Query: 259 PWGRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA 317
            W RNR   V+ G VS L++L +  T E+R+ ELML VL  LC CA GRAE+L H  G+A
Sbjct: 300 SWSRNRSLLVDLGAVSELIELEISYTGEKRITELMLGVLSRLCCCANGRAEILAHRGGIA 359

Query: 318 VVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKE 377
           VV+K++LRVS AA DRA+ IL +V KFS    V++EM+ VG V KLC VL +D  +  KE
Sbjct: 360 VVTKRLLRVSPAADDRAISILTTVSKFSPENMVVEEMVNVGTVEKLCSVLGMDCGLNLKE 419

Query: 378 RAREILKLNARAWRDSPCVPAHLLS 402
           +A+EILK +   W+  PC+   LL+
Sbjct: 420 KAKEILKDHFDEWKKFPCIDITLLT 444

E3 ubiquitin-protein ligase that acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB23.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  205 bits (521), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 217/398 (54%), Gaps = 16/398 (4%)

Query: 4   IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
           I++P HF CPISL+LM+DPVTV TG TYDR +IE W+    N TCPVT+  L +  L   
Sbjct: 12  IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL--- 68

Query: 64  TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG------RKC 117
            PNHTLRRLIQ WC  N  +G+ERIPTP+ P D T +  +L+ A     T          
Sbjct: 69  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128

Query: 118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
           LRRLR     S++NR  + A  A E L  I+      S+   E+L++L  L ++E   + 
Sbjct: 129 LRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPN-QF 187

Query: 178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSI---FEVADPFQLISVKQEFFTEIVN 234
           + I++    +E L R+L   + ++R  A  L++ +    + AD    IS  +  F  +++
Sbjct: 188 VSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGVLD 247

Query: 235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLN 294
           +LR+    S++A K  +K L  LC     R  A+  G   +L+D L    +R   E  L 
Sbjct: 248 LLRNPIS-SRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALA 306

Query: 295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM 354
            ++LLCR  EG A   +H   + ++ K ILRVS  A++ A   L ++C  +A  R  +E 
Sbjct: 307 TVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALC--TAEERWREEA 364

Query: 355 LQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRD 392
              GVV +L L++Q + + + K++A+++LKL   +W D
Sbjct: 365 AGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score =  184 bits (467), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 206/408 (50%), Gaps = 26/408 (6%)

Query: 4   IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
           I++P HF CPISL LM DPVT+STG TYDR +I+ W+    N TCPVT+  L +  L   
Sbjct: 12  IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWI-AMGNTTCPVTRVALSDFTL--- 67

Query: 64  TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG------RKC 117
            PNHTLRRLIQ WC  N  +G+ERIPTP+ P D   +  +L+ A     T          
Sbjct: 68  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAA 127

Query: 118 LRRLRSITLQSERNRSCLEAAGAIEFLATII------TKSDAGSDECDEALSILYHLNVS 171
           +RRLR +   SE+NR  +    A E L  I+      T   +       AL +L H+  +
Sbjct: 128 IRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTET 187

Query: 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQL---ISVKQEF 228
           E       + +    +  + R+L   + + R  A  L++ +   A    L   IS     
Sbjct: 188 ECE----AVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSI 243

Query: 229 FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRV 288
           F  ++++L++    S++A K  +K +  LC   + R  A+  G   +L+D L    +R  
Sbjct: 244 FEGVLDLLKNPIS-SRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCD 302

Query: 289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA 348
            E  L  ++LLCR  EG A   +H   + ++ K ILRVS  A++ A   L ++C  +A  
Sbjct: 303 TERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALC--TAEE 360

Query: 349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCV 396
           R   E    G+V++L L++Q D + + K +A+ +LKL   +W D   V
Sbjct: 361 RCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTV 408

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/427 (30%), Positives = 211/427 (49%), Gaps = 57/427 (13%)

Query: 3   EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTS 62
           EI +P+ F CPIS +LM+DPV +++GITYDR NIE+W F     TCPVT  VL   +   
Sbjct: 30  EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKW-FESGYQTCPVTNTVLTSLE--- 85

Query: 63  TTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGR--KCLRR 120
             PNHT+RR+IQ WC  +   GIERIPTP+ PV   Q+ +I      +   G    C+  
Sbjct: 86  QIPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEM 145

Query: 121 LRSITL---QSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
           +  +T    +SERNR C++  GA   L       DA S+  + +L +   ++V  +++  
Sbjct: 146 VTKMTRLGKESERNRKCVKENGAGLVLCVCF---DAFSENANASLLLEETVSVL-TWMLP 201

Query: 178 IVINNGEEF-----LESLMRVLKCGNYQSRSYAIMLLKSIFEV----ADPFQLISVKQEF 228
           I +    +         L+ +L+ G+      A  L+K + E+          I+  QE 
Sbjct: 202 IGLEGQSKLTTTSSFNRLVELLRNGDQN----AAFLIKELLELNVTHVHALTKINGVQEA 257

Query: 229 FTEIVN--------VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL 280
           F + +N        ++  HH         +  L ++L               V++ V++L
Sbjct: 258 FMKSINRDSTCVNSLISIHHMILTNQETVSRFLELDL---------------VNITVEML 302

Query: 281 LDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS 340
           +D +E  VCE  L VL+++C   EGR ++ ++   + ++ KKIL++S       V ++  
Sbjct: 303 VD-SENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWK 359

Query: 341 VCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHL 400
           VCK S     ++E L++G   KL ++LQV     TKE+  E+LK+  +  + +  V    
Sbjct: 360 VCK-SGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVD--- 415

Query: 401 LSSYPSS 407
             SY SS
Sbjct: 416 -RSYSSS 421

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 198/411 (48%), Gaps = 56/411 (13%)

Query: 3   EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTS 62
           EI +P  F CPIS+ LM+DPV +STGITYDRV+IE W+    N TCPVT  VL   D   
Sbjct: 28  EITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWI-NSGNKTCPVTNTVLTTFD--- 83

Query: 63  TTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG--RKC--- 117
             PNHT+R++IQ WC       I+RIPTP+ P+   ++ +I      +   G   KC   
Sbjct: 84  QIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVI 143

Query: 118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
           + +++ +  +SE+NR C+        L     K        DE L+ + +  +S   L +
Sbjct: 144 IEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG-----DEKLTFMLNEILS---LLT 195

Query: 178 IVINNGEEFLESLMR---------VLKCGNYQSRSYAIMLLKSIFEVADP-FQLISVKQE 227
            +   G E +  L           +LK  +   R  A  ++K I  + +      +V+  
Sbjct: 196 WMFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENG 255

Query: 228 FFTEIVNVLRDH-------------HQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVS 274
               +V ++RD              +Q   Q  + A + L              E G VS
Sbjct: 256 VAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEIASEFL--------------EIGLVS 301

Query: 275 VLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334
           + V++++D  E  VCE  L VLD +C    GR E+ K+   + ++ KKI +VS  A+  +
Sbjct: 302 ITVEMIVD-AENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSS 360

Query: 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL 385
           + ++  + K   T  V ++ +++G   K+ LVLQV    +TKE+A E+LK+
Sbjct: 361 MSMILKLWKTGNTVAV-EDAVRLGAFQKVLLVLQVGYGEETKEKATELLKM 410

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 202/403 (50%), Gaps = 38/403 (9%)

Query: 6   VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65
           VP  F CPISL +M+ PV++STG+TYDRV+I+RWL    NNTCP T Q+LQ  +     P
Sbjct: 11  VPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWL-DDGNNTCPATMQILQNKEF---VP 66

Query: 66  NHTLRRLIQAWC-TINACHGIERIPTPQPPVDKTQI----VKILNDAKKSPSTGRKCLRR 120
           N TL RLI  W  +IN     E   +  P  D+        +I NDA+       K LR 
Sbjct: 67  NLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIENDARS------KILRF 120

Query: 121 LRSITLQSERNRSCLEAAGAIEFLAT---IITKSDAGSD-------ECDEALSILYHLNV 170
            R    +S+ NR  L  AG  +F+A    +I+ S   SD       E  + LS++     
Sbjct: 121 AR----ESDENREFL--AGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIF 174

Query: 171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFT 230
               L ++++ NG + L S   ++K GN + +     +L+ I   A+   +I+  +   T
Sbjct: 175 DRRRLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVT 234

Query: 231 EIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLD-VTERRVC 289
           EI+ ++           +A L LL+ +    R ++  +    V+ L  LL D  T   V 
Sbjct: 235 EIIKLI--SSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVT 292

Query: 290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATAR 349
           E  L +L+ +  C EGR+E+   G  +  V  K+++VS AA++ AV +L SVC      +
Sbjct: 293 EKCLKLLEAISSCKEGRSEIC-DGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKK 351

Query: 350 VLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL---KLNARA 389
               ++++  V+K+ L+LQ + S+  +    ++L   K+N+R+
Sbjct: 352 AQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS 394

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 204/393 (51%), Gaps = 32/393 (8%)

Query: 2   EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLT 61
           +++ +P  FLCP+SL+LM+DPV V+TG TY+R  I+RW+  C N TCP T+Q L+   L 
Sbjct: 237 DKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWI-DCGNLTCPKTQQKLENFTL- 294

Query: 62  STTPNHTLRRLIQAWCTINACHGIER----IPTPQPPVDKTQIVKILNDAKKSPSTG--R 115
             TPN+ LR LI  WC   A H IE+    I           +++ L     S ST   R
Sbjct: 295 --TPNYVLRSLISRWC---AEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRR 349

Query: 116 KCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175
             +  +RS++ +S  NR  +  AGAI  L  ++T  D  + E   A++ + +L++ E+  
Sbjct: 350 NAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQE--NAITCVLNLSIYENN- 406

Query: 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235
           K +++  G   + S+++VL+ G  ++R  A   L S+  +AD  ++I         +V++
Sbjct: 407 KELIMFAGA--VTSIVQVLRAGTMEARENAAATLFSL-SLADENKIIIGGSGAIPALVDL 463

Query: 236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNV 295
           L +    + +  K A   L  LC +  N+ +AV  G V+ LV +L D T  R+ +  L +
Sbjct: 464 LENG---TPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTI 520

Query: 296 LDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS-DRAVRILCSVCKFSATARVLQEM 354
           L +L    + ++ ++K     A++   IL+     + + A  IL S+CK     R  +++
Sbjct: 521 LSVLANNQDAKSAIVKANTLPALIG--ILQTDQTRNRENAAAILLSLCK-----RDTEKL 573

Query: 355 LQVGVVSKLC--LVLQVDASVKTKERAREILKL 385
           + +G +  +   + L  + + + K +A  +L+L
Sbjct: 574 ITIGRLGAVVPLMDLSKNGTERGKRKAISLLEL 606

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 204/415 (49%), Gaps = 28/415 (6%)

Query: 4   IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
           I VP+ F CPISL +MR PV++ TG+TYDR +I+RWL    NNTCP T Q+L+  D    
Sbjct: 10  ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQLLKTKDF--- 65

Query: 64  TPNHTLRRLIQAWC-TINACHGIERIPTPQPP----VDKTQIVKILNDAKKSPSTGRKCL 118
            PN TL+RLI  W  +I   H  +  P   PP    V   + V +L +   S     K +
Sbjct: 66  VPNLTLQRLINIWSDSIGRRHNGDS-PVLNPPSGREVPTKEEVNVLLERLMSLENLMKIV 124

Query: 119 RRLRSITLQSERNRSCLEAAGAIEF---LATIITKSDAGSDECDEALSILYHLNVSESYL 175
           R ++     S+ NR  L  +  +EF   L  II       +    A+ IL  + V    L
Sbjct: 125 RFVK----DSDSNREFL--SKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERL 178

Query: 176 KSIVI-NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN 234
            ++++ N+G + L +++  ++ GN +S+  ++ +L  I   A    +I+ +    TE++ 
Sbjct: 179 SNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMK 238

Query: 235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLL--DVTERRVCELM 292
            +           +A+L  L+ +    R R K +    ++ + D+LL   +T   V E  
Sbjct: 239 SISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKS 298

Query: 293 LNVLDLLCRCAEGRAELLKHGAGLAV--VSKKILRVSHAASDRAVRILCSVCKFSATARV 350
           L +L+ L    EGR E+     G  V  V KK+L+VS  A++ AV IL  +C      + 
Sbjct: 299 LKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKT 358

Query: 351 LQEMLQ-VGVVSKLCLVLQVDASVKTKERARE---ILKLNARAWRDSPCVPAHLL 401
           ++E ++    V+KL +V+Q + S   ++ A++   +LK N+ A         H++
Sbjct: 359 VEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSSALAAYETKTTHIM 413

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
224104621	415	predicted protein [Populus trichocarpa]	0.987	0.968	0.714	1e-172
359479233	414	PREDICTED: E3 ubiquitin-protein ligase P	0.985	0.968	0.707	1e-167
255545325	414	ubiquitin-protein ligase, putative [Rici	0.982	0.966	0.698	1e-166
224054446	415	predicted protein [Populus trichocarpa]	0.987	0.968	0.692	1e-164
356543678	403	PREDICTED: E3 ubiquitin-protein ligase P	0.982	0.992	0.664	1e-155
356550072	403	PREDICTED: E3 ubiquitin-protein ligase P	0.982	0.992	0.669	1e-153
357453227	403	U-box domain-containing protein [Medicag	0.990	1.0	0.671	1e-153
224088104	413	predicted protein [Populus trichocarpa]	0.982	0.968	0.627	1e-151
224147652	413	predicted protein [Populus trichocarpa]	0.982	0.968	0.625	1e-151
224140014	412	predicted protein [Populus trichocarpa]	0.980	0.968	0.625	1e-150

>gi|224104621|ref|XP_002313503.1| predicted protein [Populus trichocarpa] gi|222849911|gb|EEE87458.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/420 (71%), Positives = 353/420 (84%), Gaps = 18/420 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M++I+VP HFLCPISLQLMRDPVT+STGITYDR NIERWLF+CKNNTCPVTKQ L   DL
Sbjct: 1   MDQIDVPYHFLCPISLQLMRDPVTISTGITYDRENIERWLFSCKNNTCPVTKQELFGKDL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQAWCT+NA  GIERIPTP+PP+++ QI K+LNDAKK P    K LRR
Sbjct: 61  T---PNHTLRRLIQAWCTLNASFGIERIPTPKPPIERAQIAKLLNDAKKFPHLQLKSLRR 117

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATII-----TKSDAGSDE--------CDEALSILYH 167
           LRSITL+SERNR CLE AGA++FLATI+     T  D  SD+         DEAL+ILYH
Sbjct: 118 LRSITLESERNRICLEEAGAVDFLATILKNGDSTSVDIASDDNESEFSRASDEALNILYH 177

Query: 168 LNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE 227
           L +S+  LK+++ N+G++FLESL+++LK  +YQSR+YA MLLKS+FEVADP  LIS++ E
Sbjct: 178 LKISQRKLKNLITNDGDQFLESLLQILKHSSYQSRAYATMLLKSVFEVADPMHLISIRPE 237

Query: 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR 287
            F E+V VL D  Q SQQ+SKAALKLLVE+CPWGRNRIKAVEG  VSVL++LLLD +E+R
Sbjct: 238 MFVELVRVLND--QISQQSSKAALKLLVEVCPWGRNRIKAVEGSAVSVLIELLLDKSEKR 295

Query: 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347
            CEL+L VLDLLC CAEGRAELLKHGAGLAVVSKKILRVSH ASD+AVRIL S+C+FSAT
Sbjct: 296 ACELVLAVLDLLCGCAEGRAELLKHGAGLAVVSKKILRVSHVASDKAVRILYSICRFSAT 355

Query: 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS 407
           +RVLQEMLQVGVV+KLCLVLQVD+S K+KERAREILKL++R WR+S CVPA+L+SSYPSS
Sbjct: 356 SRVLQEMLQVGVVAKLCLVLQVDSSFKSKERAREILKLHSRVWRNSACVPAYLMSSYPSS 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479233|ref|XP_002275500.2| PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/420 (70%), Positives = 343/420 (81%), Gaps = 19/420 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M+EI+VP+HF+CPISLQLMRDPVTV+TGITYDR NIERWLF+CKNNTCP TKQVL +TDL
Sbjct: 1   MDEIDVPSHFMCPISLQLMRDPVTVATGITYDRENIERWLFSCKNNTCPFTKQVLVDTDL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQAWC +NACHG+ERIPTP+PP+DK QI+K+LNDA K P    KCL+R
Sbjct: 61  T---PNHTLRRLIQAWCIVNACHGVERIPTPKPPIDKAQIIKLLNDAIKFPQMQLKCLQR 117

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDA---------GSDE----CDEALSILYH 167
           LRSI  +S+RN+ CLEAAGA+EFLA+II K ++         GS E     DEALSILY 
Sbjct: 118 LRSIAFESDRNKKCLEAAGAVEFLASIIKKDESAVIEVVLEDGSREFTRASDEALSILYQ 177

Query: 168 LNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE 227
           L  SE+ LKS+V +N   F+ESL+ VLKCGNYQSR+YA MLLKSIF+VADP QLI+   E
Sbjct: 178 LETSEAALKSLVSSN-YGFIESLVHVLKCGNYQSRAYAAMLLKSIFQVADPIQLINASPE 236

Query: 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR 287
            FTEIV+VLRD    SQQASKAALKLLVELCPWGRNRIKAV  G   VL++ LLD +E+R
Sbjct: 237 LFTEIVHVLRDG--ISQQASKAALKLLVELCPWGRNRIKAVVAGVSHVLIEHLLDTSEKR 294

Query: 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347
            CEL+L VLD LC CAEGRAELLKHGAGLA+VSKKILRVS   +DRAV+IL SV KFSAT
Sbjct: 295 TCELILVVLDQLCSCAEGRAELLKHGAGLAIVSKKILRVSQVGTDRAVKILASVSKFSAT 354

Query: 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS 407
           +RVLQEMLQVGVVSKLCLVLQVD+S KTKE+ REIL L++R W++  C+PA L SSYPSS
Sbjct: 355 SRVLQEMLQVGVVSKLCLVLQVDSSKKTKEKTREILNLHSRVWKNPSCIPARLFSSYPSS 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545325|ref|XP_002513723.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547174|gb|EEF48670.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/418 (69%), Positives = 346/418 (82%), Gaps = 18/418 (4%)

Query: 3   EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQV-LQETDLT 61
           EI++P HFLCPISLQLMRDPVTVSTGITYDR NIERWLF CKNNTCPVTKQV L + DLT
Sbjct: 2   EIDIPCHFLCPISLQLMRDPVTVSTGITYDRENIERWLFACKNNTCPVTKQVILNDEDLT 61

Query: 62  STTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRL 121
              PNHTLRRLIQAWCT+NA HGIERIPTP+PP+DKTQI ++LND    P    K LRR+
Sbjct: 62  ---PNHTLRRLIQAWCTLNASHGIERIPTPKPPIDKTQIAELLNDCNTFPHLQLKYLRRI 118

Query: 122 RSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDE------------CDEALSILYHLN 169
           RSITL+SERNRS LEAAGA++ LA+I+   ++ S E             DEALSILY L 
Sbjct: 119 RSITLESERNRSFLEAAGAVDILASIVVNDNSTSVEISIDDDPEFTRASDEALSILYLLK 178

Query: 170 VSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF 229
           +S+S LK+++  +   F+ESL+++LK  NYQSR+Y+ MLLKSIFEVADP QLI+++ E  
Sbjct: 179 ISDSKLKNLIAKDRGVFVESLIQILKHSNYQSRAYSTMLLKSIFEVADPIQLITIRPEIL 238

Query: 230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVC 289
           TE+V+VLRD  Q SQQ SKAALKLLVE+CPWGRNRIKAVEGG V+VL++LLL+ ++RR C
Sbjct: 239 TEVVHVLRD--QISQQTSKAALKLLVEVCPWGRNRIKAVEGGAVTVLIELLLETSDRRSC 296

Query: 290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATAR 349
           EL L +LDLLC CAEGRAE LKHGAGLA+VSKKILRVSH ASDRAVRILCS+C+FSAT R
Sbjct: 297 ELTLIILDLLCGCAEGRAEFLKHGAGLAIVSKKILRVSHVASDRAVRILCSICRFSATPR 356

Query: 350 VLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS 407
           VLQEMLQVGVV+KLCLVLQVD+  K+KERAREIL+L++R W++SPCVPA+L+S YPSS
Sbjct: 357 VLQEMLQVGVVAKLCLVLQVDSGCKSKERAREILRLHSRVWKNSPCVPAYLMSCYPSS 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054446|ref|XP_002298264.1| predicted protein [Populus trichocarpa] gi|222845522|gb|EEE83069.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 291/420 (69%), Positives = 349/420 (83%), Gaps = 18/420 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M++I+VP HFLCPISLQLMRDPVTVSTGITYDR NIE+WLF+CKN TCPVTKQ L   DL
Sbjct: 1   MDQIDVPYHFLCPISLQLMRDPVTVSTGITYDRENIEKWLFSCKNKTCPVTKQELFTKDL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQAWCT+NA  GIERIPTP+P  D+ QI K+LNDAKK P    K LRR
Sbjct: 61  T---PNHTLRRLIQAWCTLNASFGIERIPTPKPLADRAQISKLLNDAKKFPHLLLKSLRR 117

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDE-------------CDEALSILYH 167
           LRSITL+SERNRSCLE AG ++FLA+I+   ++ S +              DEAL+ILYH
Sbjct: 118 LRSITLESERNRSCLEEAGVVDFLASILKTDNSTSVQIDSDDNESEFTRASDEALNILYH 177

Query: 168 LNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE 227
           L +S+  LK+++IN+ + FLESL+++LK  +YQSR+YA MLLKS+FEVADP  LIS++ E
Sbjct: 178 LKISQRQLKNLIINDSDRFLESLLQILKHSSYQSRAYATMLLKSVFEVADPTHLISIRPE 237

Query: 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR 287
            F EIV VL D  Q SQQASKAALKLLVE+CPWGRNRIKAVEGG VSVL++LLLD +++R
Sbjct: 238 MFVEIVRVLDD--QISQQASKAALKLLVEICPWGRNRIKAVEGGAVSVLIELLLDTSDKR 295

Query: 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347
            CEL+L VL+LLC CA+GRAELLKHGAGLAVVSKKILRVSH ASD+AVRILCS+C+FSAT
Sbjct: 296 ACELILAVLELLCGCADGRAELLKHGAGLAVVSKKILRVSHVASDKAVRILCSICRFSAT 355

Query: 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPSS 407
           +RVLQEMLQVG V+KLCL+LQVD+S+K+KERAREILK++++ WR S C+PA+L+SSYPSS
Sbjct: 356 SRVLQEMLQVGAVAKLCLILQVDSSLKSKERAREILKVHSKVWRSSACIPAYLMSSYPSS 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543678|ref|XP_003540287.1| PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/408 (66%), Positives = 324/408 (79%), Gaps = 8/408 (1%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M+EIE+PAHFLCPISLQLMRDPVTV TGITYDR NIERWLF+CKNNTCPVTKQ L +  L
Sbjct: 1   MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHGL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQ+WCT+NA  G+ERIPTP+ P+DKTQIVK+L +AK+ P    KCL R
Sbjct: 61  T---PNHTLRRLIQSWCTLNASLGVERIPTPKSPIDKTQIVKLLTEAKRFPEKQLKCLTR 117

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC---DEALSILYHLNVSESYLKS 177
           LRS+  + +RN++CLE+AG IEFLAT +  ++   D     + A+ +L+HLN+SE+ LK+
Sbjct: 118 LRSVAFEGQRNKTCLESAGVIEFLATTMKNNNTQEDSTVLSEAAIEVLFHLNLSEARLKT 177

Query: 178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR 237
           ++ N    F+ESL  VL+ GNYQSR YA MLL+S FEVADP QLISVK   F EI+ VL 
Sbjct: 178 LINNEEFHFIESLFHVLRLGNYQSRVYATMLLRSAFEVADPIQLISVKTALFVEIMRVLC 237

Query: 238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297
           D  Q S QASKAALKL+VEL PWGRNRIK VE G VSVL++LLL  +ERR CEL+L  LD
Sbjct: 238 D--QISHQASKAALKLIVELFPWGRNRIKGVEDGTVSVLIELLLGTSERRTCELILIALD 295

Query: 298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV 357
            LC CAEGRAELL HGAG+A+VSKKILRVSH AS+R VRIL S+C++SA ARVL EMLQV
Sbjct: 296 QLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASERGVRILASICRYSANARVLHEMLQV 355

Query: 358 GVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
           G VSKLCLVLQV+   KTKERA+E+LKL++  W++SPC+P  LLSSYP
Sbjct: 356 GAVSKLCLVLQVNCGFKTKERAKEVLKLHSVVWKNSPCIPVPLLSSYP 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550072|ref|XP_003543414.1| PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/408 (66%), Positives = 328/408 (80%), Gaps = 8/408 (1%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M+EIE+PAHFLCPISLQLMRDPVTV TGITYDR NIERWLF+CKNNTCPVTKQ L   DL
Sbjct: 1   MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLNHDL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQ+WCT+NA  G+ERIPTP+ P+D+TQIVK+L +AK+ P    KCL R
Sbjct: 61  T---PNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTR 117

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC---DEALSILYHLNVSESYLKS 177
           LRSI  + +RN++CLE+AG IEFL + +  ++   D     + A+ +L+HLN+SE+ +K+
Sbjct: 118 LRSIAFEGQRNKTCLESAGVIEFLVSTMKNNNTQEDSTVLSEAAIEVLFHLNLSEARVKA 177

Query: 178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR 237
           ++ N    F+ESL  VL+ GNYQSR++A MLL+S FEVADP QLISVK   F EI+ VLR
Sbjct: 178 LINNEEFHFIESLFHVLRLGNYQSRAFATMLLRSAFEVADPIQLISVKTALFVEIMRVLR 237

Query: 238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297
           D  Q SQQASKAALKL+VEL PWGRNRIK VEGG V VLV+LLL  +ERR CEL+L  LD
Sbjct: 238 D--QISQQASKAALKLIVELFPWGRNRIKGVEGGAVLVLVELLLGASERRTCELILIALD 295

Query: 298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV 357
            LC CAEGRAELL HGAG+A+VSKKILRVSH ASDR VRIL S+C++SA ARVL EMLQV
Sbjct: 296 QLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASICRYSANARVLHEMLQV 355

Query: 358 GVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
           G VSKLCLVLQV+ S+KTKERA+EIL+L++  W++SPC+P  LLSSYP
Sbjct: 356 GAVSKLCLVLQVNCSLKTKERAKEILQLHSVVWKNSPCIPVPLLSSYP 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453227|ref|XP_003596890.1| U-box domain-containing protein [Medicago truncatula] gi|355485938|gb|AES67141.1| U-box domain-containing protein [Medicago truncatula]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/405 (67%), Positives = 330/405 (81%), Gaps = 2/405 (0%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           M+EI+VP+HFLCPISLQLM+DPVT+STGITYDR NIE+WLF+ +NNTCPVTKQ L ETDL
Sbjct: 1   MDEIDVPSHFLCPISLQLMKDPVTLSTGITYDRENIEKWLFSFQNNTCPVTKQTLLETDL 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
            +  PNHTLRRLIQ+WCT+NA  G+ERIPTP+ P+D+TQI+K+LN+AKK P     CL +
Sbjct: 61  NNLIPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLLNEAKKFPEKQLNCLVK 120

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180
           LRSI  +SERN+ CLE+AGAIEFLA  +  +   S   + A+ IL+HLN SE ++K+++ 
Sbjct: 121 LRSIVFESERNKKCLESAGAIEFLALTMKNNLNSSSLSEAAIEILFHLNPSEEHVKNLIN 180

Query: 181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH 240
           N   +F+ESL  VLK G+YQSR YA MLLKS FEV+DP QLISVK+  F EI+ VL D  
Sbjct: 181 NESIQFIESLFHVLKLGSYQSRGYATMLLKSAFEVSDPIQLISVKKAIFEEIMRVLVD-- 238

Query: 241 QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300
           + SQQASKAALKLL+EL PWGRNRIKAVEGG V VL++LL DV+ERRVCELML  LD +C
Sbjct: 239 KISQQASKAALKLLLELLPWGRNRIKAVEGGVVLVLIELLFDVSERRVCELMLIGLDQIC 298

Query: 301 RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVV 360
            CAEGRAELL HGAGLA+VSKKILRVSH ASDR VRI+ S+C++SA +RVL EML VG V
Sbjct: 299 GCAEGRAELLNHGAGLAIVSKKILRVSHVASDRGVRIMSSICRYSANSRVLHEMLHVGAV 358

Query: 361 SKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
           SKLCLVLQVD++ KTKERA+EILKL++  W++S C+P  LLSSYP
Sbjct: 359 SKLCLVLQVDSNFKTKERAKEILKLHSTVWKNSTCIPVPLLSSYP 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088104|ref|XP_002308325.1| predicted protein [Populus trichocarpa] gi|222854301|gb|EEE91848.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/419 (62%), Positives = 337/419 (80%), Gaps = 19/419 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           ME+IEVP+ FLCPISLQ+M+DPV V TGITYDR +IE+WLF+ KN+TCP+TK V+   ++
Sbjct: 1   MEDIEVPSFFLCPISLQIMKDPVIVPTGITYDRESIEKWLFSGKNDTCPITKLVISGCEV 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQ+WCT+NA +GIERIPTP+PP++KTQ+ K+LNDAK SP    KCLR+
Sbjct: 61  T---PNHTLRRLIQSWCTLNASYGIERIPTPKPPINKTQVAKLLNDAK-SPQQQVKCLRK 116

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITK---------SDAGSD---ECDEALSILYHL 168
           LRSI  ++E N+ C+EAAGA+EFL +++           SD G +     DEALSILY L
Sbjct: 117 LRSIANENETNKRCMEAAGAVEFLVSVVNNFNSLSFEETSDDGFEIARPGDEALSILYGL 176

Query: 169 NVSESYLKSIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE 227
            +SES LK++++  NGE  +E+L +V++ GNY+SR+YA++LLKS+ EVADP +LIS+K E
Sbjct: 177 EISESGLKNLIMGINGELIIETLTKVMQGGNYESRAYAVLLLKSMLEVADPLKLISLKHE 236

Query: 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR 287
            F+EIV VLRD  Q S +AS A+L+LL+ LCPWGRNRIKA+E   VSVL+DLLLD +ERR
Sbjct: 237 LFSEIVQVLRD--QISHKASNASLQLLINLCPWGRNRIKAIEAKAVSVLIDLLLDSSERR 294

Query: 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347
            CE++L VLDLLC+CAEGRAELL HGAGLAVVSKKILRVS  AS+RAVRI+ S+ K+S T
Sbjct: 295 TCEMVLMVLDLLCQCAEGRAELLGHGAGLAVVSKKILRVSQVASERAVRIILSISKYSTT 354

Query: 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPS 406
             VLQEMLQ+G+V+KLCLVLQVD   KTK++ARE+LK++AR W+ S C+PA+LLSSYP+
Sbjct: 355 TSVLQEMLQIGIVAKLCLVLQVDCGSKTKDKAREVLKIHARVWKSSRCIPANLLSSYPA 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147652|ref|XP_002336518.1| predicted protein [Populus trichocarpa] gi|222835821|gb|EEE74256.1| predicted protein [Populus trichocarpa]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/419 (62%), Positives = 337/419 (80%), Gaps = 19/419 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           ME+IEVP+ FLCPISLQ+M+DPV V TGITYDR +IE+WLF+ KN+TCP+TK V+   ++
Sbjct: 1   MEDIEVPSFFLCPISLQIMKDPVIVPTGITYDRESIEKWLFSGKNDTCPITKLVISGCEV 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQ+WCT+NA +GIERIPTP+PP++KTQ+ K+LNDAK SP    KC+R+
Sbjct: 61  T---PNHTLRRLIQSWCTLNASYGIERIPTPKPPINKTQVAKLLNDAK-SPQQQVKCIRK 116

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITK---------SDAGSD---ECDEALSILYHL 168
           LRSI  ++E N+ C+EAAGA+EFL +++           SD G +     DEALSILY L
Sbjct: 117 LRSIANENETNKRCMEAAGAVEFLVSVVNNFNSLSFEETSDDGFEIARPGDEALSILYGL 176

Query: 169 NVSESYLKSIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE 227
            +SES LK++++  NGE  +E+L +V++ GNY+SR+YA++LLKS+ EVADP +LIS+K E
Sbjct: 177 EISESGLKNLIMGINGELIIETLTKVMQGGNYESRAYAVLLLKSMLEVADPLKLISLKHE 236

Query: 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR 287
            F+EIV VLRD  Q S +AS A+L+LL+ LCPWGRNRIKA+E   VSVL+DLLLD +ERR
Sbjct: 237 LFSEIVQVLRD--QISHKASNASLQLLINLCPWGRNRIKAIEAKAVSVLIDLLLDSSERR 294

Query: 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347
            CE++L VLDLLC+CAEGRAELL HGAGLAVVSKKILRVS  AS+RAVRI+ S+ K+S T
Sbjct: 295 TCEMVLMVLDLLCQCAEGRAELLGHGAGLAVVSKKILRVSQVASERAVRIILSISKYSTT 354

Query: 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYPS 406
             VLQEMLQ+G+V+KLCLVLQVD   KTK++ARE+LK++AR W+ S C+PA+LLSSYP+
Sbjct: 355 TSVLQEMLQIGIVAKLCLVLQVDCGSKTKDKAREVLKIHARVWKSSRCIPANLLSSYPA 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140014|ref|XP_002323382.1| predicted protein [Populus trichocarpa] gi|222868012|gb|EEF05143.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/417 (62%), Positives = 326/417 (78%), Gaps = 18/417 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
           ME+IEVP+ FLCPISLQ+M+DPV V TGITYDR +IE+WLF+ KN+TCPVTKQV+   ++
Sbjct: 1   MEDIEVPSFFLCPISLQIMKDPVIVPTGITYDRESIEKWLFSSKNDTCPVTKQVISGCEV 60

Query: 61  TSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRR 120
           T   PNHTLRRLIQ+WCT+NA +G+ERIPTP+PP+ K QI K+LNDAK SP     CLR+
Sbjct: 61  T---PNHTLRRLIQSWCTLNASYGVERIPTPKPPISKAQIAKLLNDAK-SPEQQVTCLRK 116

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITK---------SDAG---SDECDEALSILYHL 168
           LRS   ++E N+ C+EAAGA+EFL +++           SD G   S   DEALSILY L
Sbjct: 117 LRSFANENETNKRCMEAAGAVEFLVSMLNNFHSLSFEVTSDDGFEISRPSDEALSILYGL 176

Query: 169 NVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEF 228
            +SES LK++V+    EF+E+L +V++ GNY+SR+YA+ LLKS+ EVAD  +LIS+K E 
Sbjct: 177 QISESGLKNLVMGRNGEFIETLTKVMQGGNYESRAYAVFLLKSMLEVADTLKLISLKHEL 236

Query: 229 FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRV 288
           F EIV VLRD  Q S QASKA L+LL+ LCPWGRNRIKA+E   V VL+DLLLD  E+R 
Sbjct: 237 FDEIVQVLRD--QISHQASKATLQLLISLCPWGRNRIKAIEAKAVPVLIDLLLDSPEKRT 294

Query: 289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA 348
           CE++L VLDLLC+CAEGRAELL HGAGLA+VSKKILRVS  AS+RAVRI+ S+ K+S T 
Sbjct: 295 CEMVLMVLDLLCQCAEGRAELLGHGAGLAIVSKKILRVSQVASERAVRIILSISKYSITT 354

Query: 349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
            VLQEMLQ+G+V+KLCLVLQVD   K K++ARE+LK+ AR W+ SPC+PA+LLSSYP
Sbjct: 355 SVLQEMLQIGIVAKLCLVLQVDCGSKIKDKAREVLKMQARVWKSSPCIPANLLSSYP 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.621	0.581	0.532	1.6e-117
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.980	0.970	0.553	1.8e-117
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.938	0.907	0.354	4.4e-52
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.943	0.912	0.332	1.4e-48
TAIR|locus:2169861	435	AT5G37490 [Arabidopsis thalian	0.941	0.880	0.295	3.3e-40
TAIR|locus:2013850	431	CMPG1 ""CYS, MET, PRO, and GLY	0.884	0.835	0.314	3.7e-39
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.886	0.882	0.308	1.9e-35
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.914	0.885	0.291	2e-33
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.901	0.599	0.286	4.2e-33
TAIR|locus:2093974	415	PUB29 "plant U-box 29" [Arabid	0.916	0.898	0.291	5.2e-33

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
 Identities = 138/259 (53%), Positives = 187/259 (72%)

Query:   152 DAGSDECDEALSILYHLNVSESYLKSIVINN-GEEFLESLMRVLKCGNYQSRSYAIMLLK 210
             D+     DEALS+LYHL+ SE+ LKS++ N  G   +++L ++++ G Y+SR+YA +LLK
Sbjct:   179 DSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYESRAYAALLLK 238

Query:   211 SIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEX 270
              + EVADP Q+I +++E F E++ +L  H Q S +A+++A+++LV  CPWGRNR KAVE 
Sbjct:   239 KLLEVADPMQIILLERELFGEVIQIL--HDQISHKATRSAMQILVITCPWGRNRHKAVEG 296

Query:   271 XXXXXXXXXXXXXT---ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS 327
                          T   ERR  E+ + VLD+LC+CAEGRAE L HGA +AVVSKKILRVS
Sbjct:   297 GTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVS 356

Query:   328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387
                S+RAVR+L SV +F AT  +LQEMLQ+GVV+KLCLVLQV    KTKE+A+E+LKL+A
Sbjct:   357 QITSERAVRVLLSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHA 416

Query:   388 RAWRDSPCVPAHLLSSYPS 406
             R WR+SPCVP +L  SYP+
Sbjct:   417 RVWRESPCVPRNLYDSYPA 435

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 226/408 (55%), Positives = 299/408 (73%)

Query:     2 EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLT 61
             EEIE+P  FLCPISL++M+DPV VSTGITYDR +IE+WLF  K N+CPVTKQ + + DLT
Sbjct:     8 EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLT 67

Query:    62 STTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRL 121
                PNHTLRRLIQ+WCT+NA +G+ERIPTP+PP+ K++I K++ D+  S     KCL+RL
Sbjct:    68 ---PNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRL 124

Query:   122 RSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN 181
             R I  ++  N+ CLEAAG  EFLA I++         DEAL++LYHL  SE+ LK+++ N
Sbjct:   125 RQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNN 184

Query:   182 NGEE-FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH 240
               +   ++SL ++++ G Y+SR YA +LLK+I EVADP Q +++K E FTE+V +L D  
Sbjct:   185 KKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDD-- 242

Query:   241 QFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXX---XXXTERRVCELMLNVLD 297
             + SQ+A+KAA+ +LV +CPWGRNR KAVE                 +ERR  E+ + VLD
Sbjct:   243 RISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLD 302

Query:   298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV 357
             LLC+CAEGRAE L HGA +AVV KKILRVS  ASDRAVR+L SV +F AT  +L EMLQ+
Sbjct:   303 LLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQL 362

Query:   358 GVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVPAHLLSSYP 405
             GVV+KLCLVLQV    KTKE+A+E+LKL+AR W+DSPC+P +++ +YP
Sbjct:   363 GVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCLPKNMILAYP 410

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 141/398 (35%), Positives = 213/398 (53%)

Query:     4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
             I++P HF CPISL+LM+DPVTV TG TYDR +IE W+    N TCPVT+  L  +D T  
Sbjct:    12 IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPL--SDFT-L 68

Query:    64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPST-----GRKC- 117
              PNHTLRRLIQ WC  N  +G+ERIPTP+ P D T +  +L+ A     T      R   
Sbjct:    69 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128

Query:   118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
             LRRLR     S++NR  + A  A E L  I+      S+   E+L++L  L ++E   + 
Sbjct:   129 LRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPN-QF 187

Query:   178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF---EVADPFQLISVKQEFFTEIVN 234
             + I++    +E L R+L   + ++R  A  L++ +    + AD    IS  +  F  +++
Sbjct:   188 VSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGVLD 247

Query:   235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTERRVCELMLN 294
             +LR+    S++A K  +K L  LC     R  A+                +R   E  L 
Sbjct:   248 LLRNPIS-SRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALA 306

Query:   295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM 354
              ++LLCR  EG A   +H   + ++ K ILRVS  A++ A   L ++C  +A  R  +E 
Sbjct:   307 TVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALC--TAEERWREEA 364

Query:   355 LQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRD 392
                GVV +L L++Q + + + K++A+++LKL   +W D
Sbjct:   365 AGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 135/406 (33%), Positives = 209/406 (51%)

Query:     4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
             I++P HF CPISL LM DPVT+STG TYDR +I+ W+    N TCPVT+  L  +D T  
Sbjct:    12 IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWI-AMGNTTCPVTRVAL--SDFT-L 67

Query:    64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPST-----GRKC- 117
              PNHTLRRLIQ WC  N  +G+ERIPTP+ P D   +  +L+ A     T      R   
Sbjct:    68 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAA 127

Query:   118 LRRLRSITLQSERNRSCLEAAGAIEFLATI----ITKSDAGSDECDEALSILYHLNVSES 173
             +RRLR +   SE+NR  +    A E L  I    I  +   S+   E+L++L  L+++E+
Sbjct:   128 IRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTET 187

Query:   174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQL---ISVKQEFFT 230
               +++  +     +  + R+L   + + R  A  L++ +   A    L   IS     F 
Sbjct:   188 ECEAVASDPSR--VGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFE 245

Query:   231 EIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTERRVCE 290
              ++++L++    S++A K  +K +  LC   + R  A+                +R   E
Sbjct:   246 GVLDLLKNPIS-SRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTE 304

Query:   291 LMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARV 350
               L  ++LLCR  EG A   +H   + ++ K ILRVS  A++ A   L ++C  +A  R 
Sbjct:   305 RGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALC--TAEERC 362

Query:   351 LQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCV 396
               E    G+V++L L++Q D + + K +A+ +LKL   +W D   V
Sbjct:   363 RDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTV 408

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2169861 AT5G37490 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 120/406 (29%), Positives = 197/406 (48%)

Query:     3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTS 62
             EI +P  F CPIS+ LM+DPV +STGITYDRV+IE W+    N TCPVT  VL   D   
Sbjct:    28 EITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWI-NSGNKTCPVTNTVLTTFD--- 83

Query:    63 TTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG--RKC--- 117
               PNHT+R++IQ WC       I+RIPTP+ P+   ++ +I      +   G   KC   
Sbjct:    84 QIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVI 143

Query:   118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC----DEALSIL-YHLNVSE 172
             + +++ +  +SE+NR C+        L     K  +G ++     +E LS+L +   +  
Sbjct:   144 IEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKF-SGDEKLTFMLNEILSLLTWMFPIGL 202

Query:   173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTE 231
               +  +   +   F   +  +LK  +   R  A  ++K I  + +      +V+      
Sbjct:   203 EGISKLA--SATSF-RCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENGVAEA 259

Query:   232 IVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTERRVCEL 291
             +V ++RD    S  ++K++L  + ++                           E  VCE 
Sbjct:   260 LVKLIRD--SVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEK 317

Query:   292 MLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVL 351
              L VLD +C    GR E+ K+   + ++ KKI +VS  A+  ++ ++  + K   T  V 
Sbjct:   318 ALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTVAV- 376

Query:   352 QEMLQVGVVSKLCLVLQVDASVKTKERAREILKL-NARAWRDSPCV 396
             ++ +++G   K+ LVLQV    +TKE+A E+LK+ N +    S CV
Sbjct:   377 EDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCV 422

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2013850 CMPG1 ""CYS, MET, PRO, and GLY protein 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 125/397 (31%), Positives = 195/397 (49%)

Query:     3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTS 62
             EI +P+ F CPIS +LM+DPV +++GITYDR NIE+W F     TCPVT  VL  T L  
Sbjct:    30 EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKW-FESGYQTCPVTNTVL--TSLEQ 86

Query:    63 TTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG--RKCLRR 120
               PNHT+RR+IQ WC  +   GIERIPTP+ PV   Q+ +I      +   G    C+  
Sbjct:    87 I-PNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEM 145

Query:   121 LRSITL---QSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
             +  +T    +SERNR C++  GA   L       DA S+  + +L +   ++V  +++  
Sbjct:   146 VTKMTRLGKESERNRKCVKENGAGLVLCVCF---DAFSENANASLLLEETVSVL-TWMLP 201

Query:   178 IVINNGEEFLES-----LMRVLKCGNYQSRSYAIMLLKSIFE--VADPFQLISVK--QEF 228
             I +    +   +     L+ +L+ G+      A  L+K + E  V     L  +   QE 
Sbjct:   202 IGLEGQSKLTTTSSFNRLVELLRNGDQN----AAFLIKELLELNVTHVHALTKINGVQEA 257

Query:   229 FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTERRV 288
             F + +N  RD    +   S   + L        +  +                  +E  V
Sbjct:   258 FMKSIN--RDSTCVNSLISIHHMILT------NQETVSRFLELDLVNITVEMLVDSENSV 309

Query:   289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA 348
             CE  L VL+++C   EGR ++ ++   + ++ KKIL++S       V ++  VCK S   
Sbjct:   310 CEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCK-SGDG 366

Query:   349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL 385
               ++E L++G   KL ++LQV     TKE+  E+LK+
Sbjct:   367 SEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKM 403

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 122/396 (30%), Positives = 195/396 (49%)

Query:     6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65
             VP  F CPISL +M+ PV++STG+TYDRV+I+RWL    NNTCP T Q+LQ  +     P
Sbjct:    11 VPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDD-GNNTCPATMQILQNKEFV---P 66

Query:    66 NHTLRRLIQAWC-TINACHGIERIPTPQPPVDKTQIV----KILNDAKKSPSTGRKCLRR 120
             N TL RLI  W  +IN     E   +  P  D+        +I NDA+       K LR 
Sbjct:    67 NLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIENDARS------KILRF 120

Query:   121 LRSITLQSERNRSCLEAAGAIEFLATIITK-SDAG--SDE----CDEALSILYHLN---V 170
              R    +S+ NR  L  AG  +F+A ++   SD+   SD       EA+ IL  +     
Sbjct:   121 AR----ESDENREFL--AGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIF 174

Query:   171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFT 230
                 L ++++ NG + L S   ++K GN + +     +L+ I   A+   +I+  +   T
Sbjct:   175 DRRRLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVT 234

Query:   231 EIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAV-EXXXXXXXXXXXXXXTERRVC 289
             EI+ ++      S    +A L LL+ +    R ++  + E              T   V 
Sbjct:   235 EIIKLISSDSDSS--LIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVT 292

Query:   290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATAR 349
             E  L +L+ +  C EGR+E+   G  +  V  K+++VS AA++ AV +L SVC      +
Sbjct:   293 EKCLKLLEAISSCKEGRSEICD-GVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKK 351

Query:   350 VLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL 385
                 ++++  V+K+ L+LQ + S+  +    ++LK+
Sbjct:   352 AQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKV 387

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 117/401 (29%), Positives = 192/401 (47%)

Query:     4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
             I VP  F CPISL +M+ PV++ TG+TYDR +I+RWL    NNTCP T Q+LQ  D    
Sbjct:     8 ITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQILQNKDFI-- 64

Query:    64 TPNHTLRRLIQAWC-TINACHGIERIPTPQPPVDKTQIVKILNDAK--KSPSTGRKCLRR 120
              PN TL+RLI+ W  ++     +E      P  D  +I   ++  K  K     R+ L +
Sbjct:    65 -PNRTLQRLIEIWSDSVRRRTCVESAELAAPTRD--EIADAIDRVKIEKEERDDREVLSK 121

Query:   121 LRSITLQSERNRSCLEAAGAIEFLATII---------TKSDAGSDECDEALSILYHLN-- 169
             +     +S+ NR  L  AG  +F+  ++         T S A S    EA+ IL  +   
Sbjct:   122 IVRFGRESDDNRGFL--AGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSK 179

Query:   170 VSESY-LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEF 228
             VS+     ++++ NG + L  ++ + K GN + +     LL+ I   A+   LI+ +   
Sbjct:   180 VSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGL 239

Query:   229 FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTER-- 286
              TE++  +      S    +++L  L+ +    R ++  +               T    
Sbjct:   240 ITELMKSISKDSDLS--LIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLS 297

Query:   287 -RVCELMLNVLDLLCRCAEGRAELLK-HGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344
               V E  L +L++L    EGR+E+    G  L  V KK+++VS AA++ AV +L SV   
Sbjct:   298 VSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYL 357

Query:   345 SATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL 385
                 + L+ +  V  V+K+ L+LQ + S   +    ++LK+
Sbjct:   358 FKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKV 398

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
 Identities = 113/395 (28%), Positives = 199/395 (50%)

Query:     2 EEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLT 61
             +++ +P  FLCP+SL+LM+DPV V+TG TY+R  I+RW+  C N TCP T+Q L+   LT
Sbjct:   237 DKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWI-DCGNLTCPKTQQKLENFTLT 295

Query:    62 STTPNHTLRRLIQAWCTINACHGIER----IPTPQPPVDKTQIVKILNDAKKSPSTG--R 115
                PN+ LR LI  WC   A H IE+    I           +++ L     S ST   R
Sbjct:   296 ---PNYVLRSLISRWC---AEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRR 349

Query:   116 KCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175
               +  +RS++ +S  NR  +  AGAI  L  ++T  D  + E   A++ + +L++ E+  
Sbjct:   350 NAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQE--NAITCVLNLSIYENN- 406

Query:   176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235
             K +++  G   + S+++VL+ G  ++R  A   L S+  +AD  ++I         +V++
Sbjct:   407 KELIMFAGA--VTSIVQVLRAGTMEARENAAATLFSL-SLADENKIIIGGSGAIPALVDL 463

Query:   236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEXXXXXXXXXXXXXXTERRVCELMLNV 295
             L +    + +  K A   L  LC +  N+ +AV               T  R+ +  L +
Sbjct:   464 LENG---TPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTI 520

Query:   296 LDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS-DRAVRILCSVCKFSATARVLQEM 354
             L +L    + ++ ++K     A++   IL+     + + A  IL S+CK   T +++  +
Sbjct:   521 LSVLANNQDAKSAIVKANTLPALIG--ILQTDQTRNRENAAAILLSLCKRD-TEKLIT-I 576

Query:   355 LQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389
              ++G V  L + L  + + + K +A  +L+L  +A
Sbjct:   577 GRLGAVVPL-MDLSKNGTERGKRKAISLLELLRKA 610

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2093974 PUB29 "plant U-box 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 115/394 (29%), Positives = 190/394 (48%)

Query:     4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
             I VP+ F CPISL +MR PV++ TG+TYDR +I+RWL    NNTCP T Q+L+  D    
Sbjct:    10 ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQLLKTKDFV-- 66

Query:    64 TPNHTLRRLIQAWC-TINACHGIERIPTPQPP----VDKTQIVKILNDAKKSPSTGRKCL 118
              PN TL+RLI  W  +I   H  +  P   PP    V   + V +L +   S     K +
Sbjct:    67 -PNLTLQRLINIWSDSIGRRHNGDS-PVLNPPSGREVPTKEEVNVLLERLMSLENLMKIV 124

Query:   119 RRLRSITLQSERNRSCL-EAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177
             R ++     S+ NR  L +    +  L  II       +    A+ IL  + V    L +
Sbjct:   125 RFVKD----SDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERLSN 180

Query:   178 IVI-NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL 236
             +++ N+G + L +++  ++ GN +S+  ++ +L  I   A    +I+ +    TE++  +
Sbjct:   181 LMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSI 240

Query:   237 RDHHQFSQQASKAALKLLVELCPWGRNRIK--AVEXXXXXXXXXXXXXXTERRVCELMLN 294
                        +A+L  L+ +    R R K  A +              T   V E  L 
Sbjct:   241 SITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLK 300

Query:   295 VLDLLCRCAEGRAELLKHGAGLAV--VSKKILRVSHAASDRAVRILCSVCKFSATARVLQ 352
             +L+ L    EGR E+     G  V  V KK+L+VS  A++ AV IL  +C      + ++
Sbjct:   301 LLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVE 360

Query:   353 EMLQ-VGVVSKLCLVLQVDASVKTKERAREILKL 385
             E ++    V+KL +V+Q + S   ++ A++++K+
Sbjct:   361 ETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKV 394

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84TG3	PUB23_ARATH	6, ., 3, ., 2, ., -	0.5686	0.9803	0.9708	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
smart00504	63	smart00504, Ubox, Modified RING finger domain	2e-24
pfam04564	73	pfam04564, U-box, U-box domain	7e-17
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	0.003

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 9  HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHT 68
           FLCPISL++M+DPV + +G TY+R  IE+WL    + T PVT Q L   DL    PN  
Sbjct: 1  EFLCPISLEVMKDPVILPSGQTYERSAIEKWLL--SHGTDPVTGQPLTHEDL---IPNLA 55

Query: 69 LRRLIQAW 76
          L+  IQ W
Sbjct: 56 LKSAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 74.3 bits (183), Expect = 7e-17
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 6  VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65
          +P  FL PI+L+LM+DPV + +GITYDR  IER L +  + T P T++ L    L    P
Sbjct: 1  IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLS-VDPTDPFTREPLTHDQL---IP 56

Query: 66 NHTLRRLIQAW 76
          N  L+  I AW
Sbjct: 57 NLELKEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 12 CPISLQLMRDPVTVST--GITYDRVNIERWLFTCKNNTCPV 50
          CP++LQ   +PVT S      +++  I   L   K   CPV
Sbjct: 14 CPLTLQPFEEPVT-SKKCNHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.9
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.89
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.75
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.75
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.66
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.52
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.38
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.3
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.28
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.27
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.25
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.23
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.2
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	99.16
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.1
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.1
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.1
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.07
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.02
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.01
PRK09687	280	putative lyase; Provisional	99.01
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.98
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.9
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.89
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.89
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.87
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.87
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.83
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.8
PHA02929	238	N1R/p28-like protein; Provisional	98.78
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.77
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.76
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.74
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.73
PRK09687	280	putative lyase; Provisional	98.73
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.7
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.69
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.63
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.63
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.59
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.57
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.54
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.54
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.53
PHA02926	242	zinc finger-like protein; Provisional	98.46
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.44
PF14634	44	zf-RING_5: zinc-RING finger domain	98.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.34
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.33
PF05536	543	Neurochondrin: Neurochondrin	98.31
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.31
PF05536	543	Neurochondrin: Neurochondrin	98.27
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.21
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.2
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.19
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.16
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.15
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
KOG2660	331	consensus Locus-specific chromosome binding protei	98.14
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.13
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.09
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.09
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.06
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.02
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.02
KOG0289	506	consensus mRNA splicing factor [General function p	97.99
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.99
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.98
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.98
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.93
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.93
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.87
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.86
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.85
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.83
PTZ00429	746	beta-adaptin; Provisional	97.8
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.79
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.77
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.74
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.7
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.62
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.62
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.62
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.61
PTZ00429	746	beta-adaptin; Provisional	97.55
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.55
COG5369	743	Uncharacterized conserved protein [Function unknow	97.54
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.54
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.51
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.51
TIGR02270	410	conserved hypothetical protein. Members are found	97.49
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.47
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.42
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.39
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.33
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.28
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.26
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.24
COG5152	259	Uncharacterized conserved protein, contains RING a	97.23
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.19
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.19
KOG2979	262	consensus Protein involved in DNA repair [General	97.16
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.14
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.11
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.1
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.09
KOG3036	293	consensus Protein involved in cell differentiation	97.09
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.09
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.08
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
TIGR02270	410	conserved hypothetical protein. Members are found	97.04
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.94
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.93
PF04641	260	Rtf2: Rtf2 RING-finger	96.92
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.92
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.85
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.83
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.8
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.78
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.66
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.65
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.63
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.61
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.6
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.59
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.57
COG5369	743	Uncharacterized conserved protein [Function unknow	96.55
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.54
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.53
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.51
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.49
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.39
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.35
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	96.3
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.29
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.24
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.22
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.12
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.06
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.05
KOG4413	524	consensus 26S proteasome regulatory complex, subun	95.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.88
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.81
KOG3113	293	consensus Uncharacterized conserved protein [Funct	95.79
PF05004	309	IFRD: Interferon-related developmental regulator (	95.74
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.73
KOG3036	293	consensus Protein involved in cell differentiation	95.69
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.54
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.44
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.43
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.38
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.29
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.25
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.25
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.17
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.14
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.13
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.08
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.08
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.06
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.05
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.04
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.01
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.94
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.85
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.83
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.83
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.82
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.74
PF05004	309	IFRD: Interferon-related developmental regulator (	94.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.68
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.68
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.64
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.61
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.58
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.57
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	94.51
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.51
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	94.43
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.25
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.18
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.17
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.05
COG5109	396	Uncharacterized conserved protein, contains RING Z	93.88
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.83
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.83
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.81
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.81
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.77
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	93.7
KOG0825	1134	consensus PHD Zn-finger protein [General function	93.61
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.52
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.52
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.38
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.37
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	93.24
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.18
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.11
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.11
PRK14707	2710	hypothetical protein; Provisional	92.92
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.68
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.66
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.4
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.39
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.32
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	92.24
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	92.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.2
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.15
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.13
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.09
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	91.99
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.96
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.92
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.78
cd03561	133	VHS VHS domain family; The VHS domain is present i	91.71
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.52
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	90.88
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.87
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.87
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	90.86
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.82
PRK14707	2710	hypothetical protein; Provisional	90.68
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.66
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.65
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	90.63
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	90.57
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.43
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	90.14
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.0
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	89.74
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	89.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.61
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	89.47
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	89.45
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.12
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	88.83
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.63
PHA02825	162	LAP/PHD finger-like protein; Provisional	88.09
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	88.03
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.35
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.35
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	87.34
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.14
KOG2025	892	consensus Chromosome condensation complex Condensi	86.79
KOG3002	299	consensus Zn finger protein [General function pred	86.72
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	86.68
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	86.33
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	86.25
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.23
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	86.22
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	86.07
KOG0396	389	consensus Uncharacterized conserved protein [Funct	85.66
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.63
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.42
PF04641	260	Rtf2: Rtf2 RING-finger	85.1
KOG0414	1251	consensus Chromosome condensation complex Condensi	84.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.7
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	84.62
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.44
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	84.41
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	84.34
KOG4653	982	consensus Uncharacterized conserved protein [Funct	84.06
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.81
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	83.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	83.69
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	83.44
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	83.34
PLN02195	977	cellulose synthase A	83.33
PLN02189	1040	cellulose synthase	83.12
PHA02862	156	5L protein; Provisional	82.97
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.36
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	81.9
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	81.65
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	81.41
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	81.32
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	81.15
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.14
KOG0414	1251	consensus Chromosome condensation complex Condensi	80.98
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	80.2
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	80.07

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=3.7e-27  Score=258.91  Aligned_cols=281  Identities=16%  Similarity=0.191  Sum_probs=241.7

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      +.+.++.|++.|.+++ ..|..|++.|++++..+++++..++++|+||.|+++|.+++.  .++++|+|+|.|++.++++
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~q  521 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSED  521 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHH
Confidence            3567999999999877 889999999999999989999999999999999999998765  4699999999999998877


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-----------------------------------
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-----------------------------------  219 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-----------------------------------  219 (407)
                      .+.++...|  +++.|+++|++++.+.++.|+++|.+|+...+..                                   
T Consensus       522 ir~iV~~aG--AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d  599 (2102)
T PLN03200        522 IRACVESAG--AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED  599 (2102)
T ss_pred             HHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence            778787666  8999999999999999999999999996432211                                   


Q ss_pred             --hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH
Q 040073          220 --QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL  296 (407)
Q Consensus       220 --~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L  296 (407)
                        .......|+++.|+++|+++   +++.++.|+++|.+++.+ ++++..++..|+||+|+.+|..+ +.+++..++++|
T Consensus       600 ~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL  675 (2102)
T PLN03200        600 LVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARAL  675 (2102)
T ss_pred             HHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHH
Confidence              00111347899999999999   999999999999999985 45788899999999999999987 788999999999


Q ss_pred             HHHhcC--HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH
Q 040073          297 DLLCRC--AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK  374 (407)
Q Consensus       297 ~~L~~~--~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~  374 (407)
                      .+|+.+  .+++..++. .|+||+|++++...+....+.|+.+|.+++.+..   .+.++.+.|+|++|+++|++ ++++
T Consensus       676 ~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e---~~~ei~~~~~I~~Lv~lLr~-G~~~  750 (2102)
T PLN03200        676 AALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE---VAAEALAEDIILPLTRVLRE-GTLE  750 (2102)
T ss_pred             HHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch---HHHHHHhcCcHHHHHHHHHh-CChH
Confidence            999963  344556666 6899999998887788999999999999998543   57888889999999999996 4899


Q ss_pred             HHHHHHHHHHHHHhh
Q 040073          375 TKERAREILKLNARA  389 (407)
Q Consensus       375 ~k~~A~~lL~~l~~~  389 (407)
                      .|+.|+++|..|.+.
T Consensus       751 ~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        751 GKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999877764

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=4.1e-27  Score=258.56  Aligned_cols=283  Identities=16%  Similarity=0.158  Sum_probs=238.9

Q ss_pred             hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      ...+..+++.|.+.  . +.+..|+..|+.+++++++||..+.+ .|+||.|+.+|.+++.  .++++|+.+|.+|+.++
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~--~vk~nAaaaL~nLS~~e   89 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL--GAKVNAAAVLGVLCKEE   89 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCH
Confidence            56788999999754  4 88999999999999999999999997 9999999999987765  56999999999999886


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC---CchhhhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA---DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKA  249 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~  249 (407)
                      + ++..+...|  +++.|+.+|++++.+.|++|+.+|++|+...   +++..++...|+||+|+.+++++...+..+++.
T Consensus        90 ~-nk~~Iv~~G--aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~  166 (2102)
T PLN03200         90 D-LRVKVLLGG--CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL  166 (2102)
T ss_pred             H-HHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence            5 565665555  8999999999999999999999999999874   344466766799999999999861012235677


Q ss_pred             HHHHHHHhCCCCchHH-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC
Q 040073          250 ALKLLVELCPWGRNRI-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS  327 (407)
Q Consensus       250 A~~aL~~L~~~~~n~~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s  327 (407)
                      ++.+|+||+...+|+. .++++|+||.|+++|.++ ++..++.|+++|.+++.+ ++++..+++ .|+||.||++|.+++
T Consensus       167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~  244 (2102)
T PLN03200        167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGN  244 (2102)
T ss_pred             HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCC
Confidence            8899999999988875 458999999999999986 889999999999888865 678888887 689999999876654


Q ss_pred             -chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHh
Q 040073          328 -HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA--------SVKTKERAREILKLNAR  388 (407)
Q Consensus       328 -~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--------~~~~k~~A~~lL~~l~~  388 (407)
                       ...+++|+.+|.+|+.++  .+.+..+++.|+++.|+.++.+..        +...++.|.+.|..+++
T Consensus       245 ~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        245 EVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             ChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence             588999999999999854  457999999999999999998432        23458999999999877

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.4e-25  Score=214.35  Aligned_cols=282  Identities=15%  Similarity=0.194  Sum_probs=244.5

Q ss_pred             ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      ..+-|+.++..|...+  ..|.+|+++|.+++..+.+.-..++++|++|.++.+|.+++.  .+++.|+|+|+|++.+..
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--~v~eQavWALgNIagds~  184 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--DVREQAVWALGNIAGDSP  184 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--HHHHHHHHHHhccccCCh
Confidence            3577899999997443  889999999999999999999999999999999999999887  679999999999999999


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCCh-hHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNY-QSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      ..+.++...|  +++.|..++..... ....+++|+|.||+........+..-..++|.|..++.+.   |.++...|+|
T Consensus       185 ~~Rd~vl~~g--~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~---D~~Vl~Da~W  259 (514)
T KOG0166|consen  185 DCRDYVLSCG--ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST---DEEVLTDACW  259 (514)
T ss_pred             HHHHHHHhhc--chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            9999999887  89999999987644 7889999999999988754444444457899999999998   9999999999


Q ss_pred             HHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-Cchh
Q 040073          253 LLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAA  330 (407)
Q Consensus       253 aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~  330 (407)
                      ||.+|+.+.. ....+++.|++|.|+++|... +..++.-|+.++.|++.+.+.+.+.+-+.|++|.|..++.+. ....
T Consensus       260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~i  338 (514)
T KOG0166|consen  260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESI  338 (514)
T ss_pred             HHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhH
Confidence            9999997554 555568999999999999986 678888999999999999988888877789999999966643 3457


Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ++.|+.++.|++.+  +.+.++.++++|.+|.|+.+|+.. ..++|++|++++..+..
T Consensus       339 kkEAcW~iSNItAG--~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  339 KKEACWTISNITAG--NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS  393 (514)
T ss_pred             HHHHHHHHHHhhcC--CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence            88899999999985  445699999999999999999964 79999999999987654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.2e-25  Score=199.94  Aligned_cols=279  Identities=14%  Similarity=0.144  Sum_probs=239.6

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      .+.+..+.+.-++.+ -.|.++++.|.++... .+||+.++.+|++|.|++++.+++.  ++++.+..+|.+++.+.. .
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~--dvqyycttaisnIaVd~~-~  241 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDL--DVQYYCTTAISNIAVDRR-A  241 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCCh--hHHHHHHHHhhhhhhhHH-H
Confidence            344555555333444 7889999999999765 8999999999999999999999887  579999999999998775 4


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      ++++.+.+-+.++.||.++.+++..++..|..+|++|++..++...+... |.+|.||++|+++   .-....+...+++
T Consensus       242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a-g~lP~lv~Llqs~---~~plilasVaCIr  317 (550)
T KOG4224|consen  242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA-GSLPLLVELLQSP---MGPLILASVACIR  317 (550)
T ss_pred             HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc-CCchHHHHHHhCc---chhHHHHHHHHHh
Confidence            55555543258999999999999999999999999999999998888874 7899999999987   7777888899999


Q ss_pred             HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      |++.++-|...++++|.+.+|+.+|.-+.+.+++-.|..+|++|+. +..++..|.+ .|+||.+..+++++.-..++.-
T Consensus       318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHH
Confidence            9999999999999999999999999988667799999999999998 5667777777 7899999999999888888887


Q ss_pred             HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      -.++..++....   .+....++|.++.|+.+..+. +.+++.+|++.|-.|++
T Consensus       397 sac~a~Lal~d~---~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  397 SACIAQLALNDN---DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHHHHHhccc---cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence            788888887544   377788899999999998854 89999999999988876

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-24  Score=197.97  Aligned_cols=275  Identities=16%  Similarity=0.180  Sum_probs=229.5

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      .++..|+..+.++. +.|+.++.+|.+++.. ++||..+...|++.+|+++-++.+. . ++.++..+|.+|..+.+ ++
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdi-r-vqrnatgaLlnmThs~E-nR  201 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDI-R-VQRNATGALLNMTHSRE-NR  201 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchh-h-HHHHHHHHHHHhhhhhh-hh
Confidence            35666776766666 9999999999999998 7899999999999999996555554 2 59999999999997776 55


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh--hHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE--FFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      +.+..+|  .+|.||.+|++++.+++..++.+|.+++...-.++.... .|  .++.||+++.++   ++.++..|..||
T Consensus       202 r~LV~aG--~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~---s~kvkcqA~lAL  275 (550)
T KOG4224|consen  202 RVLVHAG--GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDG---SDKVKCQAGLAL  275 (550)
T ss_pred             hhhhccC--CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCC---ChHHHHHHHHHH
Confidence            5566666  599999999999999999999999999866555555544 56  999999999999   999999999999


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASDR  333 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~  333 (407)
                      +||++..+.+..++++|.+|.++++|.+. .....-..+..+.+++.++-+-.-|++ +|.+.+||.+|.-++ ++.|-+
T Consensus       276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqch  353 (550)
T KOG4224|consen  276 RNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCH  353 (550)
T ss_pred             hhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhh
Confidence            99999999999999999999999999875 555566777889999998877766766 789999999776664 669999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      |+.+||+++..+.  ..+..+.++|+|++|.+++. +++-..|..-..-+..|+
T Consensus       354 AvstLrnLAasse--~n~~~i~esgAi~kl~eL~l-D~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  354 AVSTLRNLAASSE--HNVSVIRESGAIPKLIELLL-DGPVSVQSEISACIAQLA  404 (550)
T ss_pred             HHHHHHHHhhhhh--hhhHHHhhcCchHHHHHHHh-cCChhHHHHHHHHHHHHH
Confidence            9999999998432  24778888999999999998 556777777666665554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-24  Score=207.41  Aligned_cols=308  Identities=15%  Similarity=0.181  Sum_probs=254.9

Q ss_pred             HHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh
Q 040073           71 RLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT  149 (407)
Q Consensus        71 ~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~  149 (407)
                      +.-..|...|..++..  ..++..++.+.++.+++.+.+++ ..+..|+++|.+++.+++..|+.+.+.|++++|+.++.
T Consensus       127 q~eAAWaLTnIAsgts--e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~  204 (514)
T KOG0166|consen  127 QFEAAWALTNIASGTS--EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN  204 (514)
T ss_pred             HHHHHHHHHHHhcCch--hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence            4446788887766531  34555678888999999999888 99999999999999999999999999999999999999


Q ss_pred             ccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhH
Q 040073          150 KSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF  229 (407)
Q Consensus       150 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i  229 (407)
                      .... .....++.|+|.|||.+....-.+-.-..  ++|.|..+|.+.+.++...|+|+|.+|+........++...|++
T Consensus       205 ~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~--iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv  281 (514)
T KOG0166|consen  205 KSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAP--ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVV  281 (514)
T ss_pred             cccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccch
Confidence            8765 22489999999999998732222222222  79999999999999999999999999998887777777778999


Q ss_pred             HHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHH
Q 040073          230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRA  307 (407)
Q Consensus       230 ~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~  307 (407)
                      +.||.+|...   +..++..|++++.|+..+.+ ....+++.|++|.|..+|.......++.+|+|++.|++.+.. ..+
T Consensus       282 ~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq  358 (514)
T KOG0166|consen  282 PRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ  358 (514)
T ss_pred             HHHHHHHcCC---CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence            9999999988   88899999999999999666 555568899999999999865355689999999999998655 445


Q ss_pred             HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      ++++ +|.+|.|+..|..+.-+.++.|+.++.|++.... .+....+++.|+|++|..+|... +.+.-..+...|..+-
T Consensus       359 aVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~-~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil  435 (514)
T KOG0166|consen  359 AVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT-PEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENIL  435 (514)
T ss_pred             HHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhcccCC-HHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHH
Confidence            5555 7899999998888888889999999999998754 66889999999999999999643 6666777777777665


Q ss_pred             hh
Q 040073          388 RA  389 (407)
Q Consensus       388 ~~  389 (407)
                      ++
T Consensus       436 ~~  437 (514)
T KOG0166|consen  436 KV  437 (514)
T ss_pred             HH
Confidence            54

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=2.6e-23  Score=188.63  Aligned_cols=281  Identities=11%  Similarity=0.096  Sum_probs=239.5

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHH-hhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSI-TLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l-~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ..++|.+.+.|.+++ +.|..|+-..|.+ +++..-....++++|++|.++.+|+..... ..+.+|+|+|.|++.+..+
T Consensus        70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~-mlqfEAaWalTNiaSGtt~  148 (526)
T COG5064          70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD-MLQFEAAWALTNIASGTTQ  148 (526)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-HHHHHHHHHHhhhccCccc
Confidence            347899999999998 9999999999885 555555677889999999999999755442 3588999999999999887


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      ..+++.+.|  ++|.++++|.+++.++++.++|+|.|++.+.+.++..+...|++.+|+.++.+. ..+..+.+++.|+|
T Consensus       149 QTkvVvd~~--AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss-~~~ismlRn~TWtL  225 (526)
T COG5064         149 QTKVVVDAG--AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS-AIHISMLRNATWTL  225 (526)
T ss_pred             ceEEEEeCC--chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc-cchHHHHHHhHHHH
Confidence            888888887  899999999999999999999999999999999888888889999999998754 13458999999999


Q ss_pred             HHhCCCC---chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073          255 VELCPWG---RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS  331 (407)
Q Consensus       255 ~~L~~~~---~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~  331 (407)
                      .|||...   ++...+..  ++|.|.+++-.. ++++...|+|++..|+..+..+..++-+.|..+.||.+|.+.+...+
T Consensus       226 SNlcRGknP~P~w~~isq--alpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iq  302 (526)
T COG5064         226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ  302 (526)
T ss_pred             HHhhCCCCCCCchHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccccc
Confidence            9999843   35555444  599999999887 89999999999999999888888777767888899998888888899


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          332 DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       332 e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      ..|++...++..++..  ..+.+++.|+++.+..+|.+. .+..|+.|.+.+..+-
T Consensus       303 tPalR~vGNIVTG~D~--QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNIT  355 (526)
T COG5064         303 TPALRSVGNIVTGSDD--QTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNIT  355 (526)
T ss_pred             CHHHHhhcCeeecCcc--ceehheecccHHHHHHHhcCh-hhhhhhhhheeecccc
Confidence            9999999999987654  467788999999999998754 6789999988887653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.90  E-value=1.2e-22  Score=184.45  Aligned_cols=307  Identities=13%  Similarity=0.110  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHH
Q 040073           69 LRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATI  147 (407)
Q Consensus        69 l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l  147 (407)
                      |-+.-..|...|..+|.+  ..++..+|.+.+|.+++.|.++. +++..++++|.+++.+++..|+.+.+.|++++|+.+
T Consensus       130 mlqfEAaWalTNiaSGtt--~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~l  207 (526)
T COG5064         130 MLQFEAAWALTNIASGTT--QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGL  207 (526)
T ss_pred             HHHHHHHHHHhhhccCcc--cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHH
Confidence            445557788888877642  24455678999999999999887 999999999999999999999999999999999999


Q ss_pred             hhccCCCCchHHHHHHHHHhcCCChhH--HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch
Q 040073          148 ITKSDAGSDECDEALSILYHLNVSESY--LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK  225 (407)
Q Consensus       148 L~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~  225 (407)
                      |.+.........++.|.|.|||.+..-  ....+..    ++|.|.+++.+-++++...|+|+|.+|+..+..+..+...
T Consensus       208 l~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq----alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld  283 (526)
T COG5064         208 LLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ----ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLD  283 (526)
T ss_pred             HHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHh
Confidence            986654323489999999999986522  2333432    6999999999999999999999999999888777777777


Q ss_pred             hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh
Q 040073          226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE  304 (407)
Q Consensus       226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~  304 (407)
                      .|..+.||++|.++   +..++.-|++.+.|+....+ ....+++.|+++.+..+|.+. ...++.+|+|++.++.....
T Consensus       284 ~g~~~RLvElLs~~---sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnt  359 (526)
T COG5064         284 VGIPGRLVELLSHE---SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNT  359 (526)
T ss_pred             cCCcHHHHHHhcCc---cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCH
Confidence            89999999999998   88999999999999998654 556678999999999999886 67999999999999988655


Q ss_pred             hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc-hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          305 GRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT-ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       305 ~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                      .+.+.+-++..+|+|+.+|....-..++.|+.++.+.+++..+ .......++.|+|.+|..+|... +.+.-+.|-..+
T Consensus       360 eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~  438 (526)
T COG5064         360 EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAI  438 (526)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHH
Confidence            5444444478999999988776667777788888888776533 35688889999999999999754 444555554444


Q ss_pred             HHH
Q 040073          384 KLN  386 (407)
Q Consensus       384 ~~l  386 (407)
                      +.+
T Consensus       439 eni  441 (526)
T COG5064         439 ENI  441 (526)
T ss_pred             HHH
Confidence            433

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.89  E-value=1.4e-23  Score=154.61  Aligned_cols=72  Identities=47%  Similarity=0.907  Sum_probs=62.1

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +|++|+||||+++|+|||++++||||||++|++|+.. ++.+||.|+++++..   +++||..||+.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~---~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES---DLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG---GSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc---cceECHHHHHHHHHHHHHcc
Confidence            7999999999999999999999999999999999987 488999999999885   89999999999999999875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00504 Ubox Modified RING finger domain

Probab=99.75  E-value=9e-19  Score=125.97  Aligned_cols=63  Identities=49%  Similarity=0.928  Sum_probs=59.0

Q ss_pred             cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073            9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW   76 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~   76 (407)
                      +|.||||+++|+|||+++|||+|||.||.+|+.+  +.+||.|+++++.+   ++++|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~---~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHE---DLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChh---hceeCHHHHHHHHhC
Confidence            5899999999999999999999999999999976  67899999999774   899999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.75  E-value=4.5e-16  Score=159.62  Aligned_cols=254  Identities=18%  Similarity=0.221  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHH
Q 040073          114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRV  193 (407)
Q Consensus       114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~l  193 (407)
                      .+.++..|.+++.+ ..+...+++.|+|+.|+++|++.+.  .+...++..|..|+...+ ++..+.+.|  +++.|+++
T Consensus       266 lrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~--ellil~v~fLkkLSi~~E-NK~~m~~~g--iV~kL~kL  339 (708)
T PF05804_consen  266 LRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENE--ELLILAVTFLKKLSIFKE-NKDEMAESG--IVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHcC--CHHHHHHH
Confidence            34566778888876 7899999999999999999987754  468889999999999886 577777766  89999999


Q ss_pred             HhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCch
Q 040073          194 LKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGV  273 (407)
Q Consensus       194 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v  273 (407)
                      +.+++.+....+.++|.|||.+.+.+..+.. .|++|.|+.+|.++     ..+..++..|++||..+++|..+...+++
T Consensus       340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~~f~~TdcI  413 (708)
T PF05804_consen  340 LPSENEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP-----NFREVALKILYNLSMDDEARSMFAYTDCI  413 (708)
T ss_pred             hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence            9999999999999999999988877776665 69999999999765     35567999999999999999999999999


Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHH
Q 040073          274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQE  353 (407)
Q Consensus       274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~  353 (407)
                      |.|+++|..+++..+...+++++.||+.+..+.+.+.+ ++|++.|++...+..+   ..-++++.|++.+++.   .+.
T Consensus       414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~---~k~  486 (708)
T PF05804_consen  414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP---LKE  486 (708)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch---HHH
Confidence            99999988765666777889999999999999888887 6889999997766433   3345799999998743   222


Q ss_pred             HHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          354 MLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       354 ~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      +. .+.+..|+.++....++...-.+-.+|.+|.
T Consensus       487 ~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  487 LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            22 3688899999886556665555555555543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.74  E-value=1.2e-15  Score=156.50  Aligned_cols=276  Identities=16%  Similarity=0.205  Sum_probs=215.7

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      .+.|+.|++.|.+.+ +....++..|.+++-. .+||..|.+.|+|+.|++++.+.+.  ..+..++.+|+||+.+.+ .
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~--~l~~~aLrlL~NLSfd~~-~  364 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE--DLVNVALRLLFNLSFDPE-L  364 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH--HHHHHHHHHHHHhCcCHH-H
Confidence            455777888888777 7888899999999987 7899999999999999999997765  469999999999999886 4


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      +..+...|  .+|.|+.+|.++  ..+..+..+|.+||..++.+..+.. .++++.|++++-.+  .+..+...++.++.
T Consensus       365 R~~mV~~G--lIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~--~~~~v~~eliaL~i  437 (708)
T PF05804_consen  365 RSQMVSLG--LIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLEN--SEEEVQLELIALLI  437 (708)
T ss_pred             HHHHHHCC--CcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhC--CCccccHHHHHHHH
Confidence            66666666  899999999754  4667899999999988777666655 57899999987654  25666777888889


Q ss_pred             HhCCCCchHHHHHhcCchHHHHHHhh-------------------------------------cccchhHHHHHHHHHHH
Q 040073          256 ELCPWGRNRIKAVEGGGVSVLVDLLL-------------------------------------DVTERRVCELMLNVLDL  298 (407)
Q Consensus       256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~-------------------------------------~~~~~~~~~~al~~L~~  298 (407)
                      ||+.++.|...+.+.|+++.|++...                                     .+.+.+..-+++++|.|
T Consensus       438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            99999888888888788887765322                                     22256778899999999


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC--CHH
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA--SVK  374 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--~~~  374 (407)
                      |...+.....++...+.+|.+.+.|..+.  +...-.++.++..++.   +..+...+.+.|.++.|+.+|.+..  ++-
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---d~~~A~lL~~sgli~~Li~LL~~kqeDdE~  594 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---DPECAPLLAKSGLIPTLIELLNAKQEDDEI  594 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC---CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence            99877778888876788999999776553  4566667788888885   5567888889999999999998642  334


Q ss_pred             HHHHHHHHHHHH
Q 040073          375 TKERAREILKLN  386 (407)
Q Consensus       375 ~k~~A~~lL~~l  386 (407)
                      +-+-...+.+++
T Consensus       595 VlQil~~f~~ll  606 (708)
T PF05804_consen  595 VLQILYVFYQLL  606 (708)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=3.4e-15  Score=136.02  Aligned_cols=270  Identities=14%  Similarity=0.194  Sum_probs=222.1

Q ss_pred             CCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhH
Q 040073          109 KSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFL  187 (407)
Q Consensus       109 ~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i  187 (407)
                      +++ ..-.+++..|..+....|+    +++.-+...++.+|....++.++....+..+..-|..++.+++.+.+.+  ++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~--il  191 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK--IL  191 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh--HH
Confidence            444 5667888888888766554    5667778999999987766555677777777777777778888888876  88


Q ss_pred             HHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhh---------chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          188 ESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLIS---------VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       188 ~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~---------~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      +.+...|.. |...+...+.++++.|...++.+..++         ...|+...|++.++.+  .+|.+...+..+|..|
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~--~dp~~L~~l~~tl~~l  269 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG--IDPDSLVSLSTTLKAL  269 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc--CCccHHHHHHHHHHHH
Confidence            888877765 555688889999999987776554332         2245688999999987  6899999999999999


Q ss_pred             CCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC--CchhhH
Q 040073          258 CPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV--SHAASD  332 (407)
Q Consensus       258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e  332 (407)
                      +..++-++.+++.|++..|++++.+..   .+.....++++|..|+.+++.|..|++ .||.+.++.++.+.  ++..-+
T Consensus       270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~  348 (461)
T KOG4199|consen  270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQ  348 (461)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHH
Confidence            999999999999999999999998843   345668999999999999999999999 68999999988775  478888


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA-SVKTKERAREILKLNARA  389 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~~  389 (407)
                      .++.++..+|-..+++  ...+++.|+-...+..|+.++ -..++++|.++++++...
T Consensus       349 ~~~a~i~~l~LR~pdh--sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r  404 (461)
T KOG4199|consen  349 EVMAIISILCLRSPDH--SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR  404 (461)
T ss_pred             HHHHHHHHHHhcCcch--HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence            8999999999998885  677889999999999998775 567889999999999764

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.67  E-value=4.8e-15  Score=154.90  Aligned_cols=264  Identities=17%  Similarity=0.174  Sum_probs=215.4

Q ss_pred             HHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC----------CCchHHHHHHHHHhcCCChhHHHhHhhccchh
Q 040073          116 KCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA----------GSDECDEALSILYHLNVSESYLKSIVINNGEE  185 (407)
Q Consensus       116 ~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~----------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~  185 (407)
                      .|+..|-+++.+ +++|..+-+.|++..+.+||.-+..          ...++..|.++|.||..++..+|..+....| 
T Consensus       317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg-  394 (2195)
T KOG2122|consen  317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG-  394 (2195)
T ss_pred             HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh-
Confidence            667777777765 8999999999999999998853211          1246889999999999999999988887665 


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHH-cccCCCCCHHHHHHHHHHHHHhCCC-Cc
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNV-LRDHHQFSQQASKAALKLLVELCPW-GR  262 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~L~~~-~~  262 (407)
                      +|+.+|..|.+...++.+-.+.+|+||+=. +.+.+.+....|-+..|+.. |++.   .....++.+.|||||+.+ .+
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~---kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK---KESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc---ccchHHHHHHHHhhhhhcccc
Confidence            999999999999999999999999999854 45667777888989999875 5555   667889999999999995 57


Q ss_pred             hHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHh----cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          263 NRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLC----RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       263 n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~----~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      ||..|.. -|++..|+.+|.-..   .-.+.|.+-++|.|++    .+.++|+.+.++ ..+..|++.|...+-...-++
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecc
Confidence            9999877 699999999996531   3467889999998764    467778777774 689999998888888889999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      +++||||...+..  .++.+.+.|+++.|..++++...+.+.--|+.|..+|+
T Consensus       551 CGTLWNLSAR~p~--DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  551 CGTLWNLSARSPE--DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             hhhhhhhhcCCHH--HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            9999999987654  47777789999999999998766666666666666654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=2e-13  Score=124.55  Aligned_cols=282  Identities=16%  Similarity=0.200  Sum_probs=218.8

Q ss_pred             ChhhHHHHHHHhc--CCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           96 DKTQIVKILNDAK--KSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        96 ~~~~i~~ll~~L~--~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      |..+..-++..|.  .++ +.....+..++.-+..++.||..+.+.|+.+.+...|....... ...++.++++.|..++
T Consensus       143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~-~VRel~~a~r~l~~dD  221 (461)
T KOG4199|consen  143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTR-TVRELYDAIRALLTDD  221 (461)
T ss_pred             ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccH-HHHHHHHHHHHhcCCC
Confidence            4455555555553  333 66777888999988888999999999999999998887665533 4777888888887665


Q ss_pred             h---------HHHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC-CC
Q 040073          173 S---------YLKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH-HQ  241 (407)
Q Consensus       173 ~---------~~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~  241 (407)
                      +         +..+.+...|  .+..|++.|+.+ ++++...+..+|..|+..+|.++.+... |++..|++++.+. +.
T Consensus       222 DiRV~fg~ah~hAr~ia~e~--~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~-GGl~tl~~~i~d~n~~  298 (461)
T KOG4199|consen  222 DIRVVFGQAHGHARTIAKEG--ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAES-GGLDTLLRCIDDSNEQ  298 (461)
T ss_pred             ceeeecchhhHHHHHHHHhh--hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHhhhchh
Confidence            3         2334454444  488999999875 7889999999999999999999999886 6799999999873 00


Q ss_pred             CCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHH
Q 040073          242 FSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVV  319 (407)
Q Consensus       242 ~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~L  319 (407)
                      .+.+..+.++..|+.|+.+++++..||+.|+.+.++.++... +++.+.+.++.++..||- .+++-..+++ +|+-...
T Consensus       299 ~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~a  377 (461)
T KOG4199|consen  299 GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLA  377 (461)
T ss_pred             hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHH
Confidence            133567888999999999999999999999999999998664 378899999999999886 6777777887 6777788


Q ss_pred             HHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073          320 SKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN  386 (407)
Q Consensus       320 v~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l  386 (407)
                      |+.|...-  ...+.+|+..+.|+..++.+  .+...+. .|+++|+..-.++ .+..+..|...|+-|
T Consensus       378 vqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~-~GiE~Li~~A~~~-h~tce~~akaALRDL  442 (461)
T KOG4199|consen  378 VQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLA-NGIEKLIRTAKAN-HETCEAAAKAALRDL  442 (461)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHh-ccHHHHHHHHHhc-CccHHHHHHHHHHhc
Confidence            88887753  45699999999999997665  3555555 5588998877654 455566666677755

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.58  E-value=8.7e-14  Score=140.06  Aligned_cols=286  Identities=13%  Similarity=0.096  Sum_probs=218.9

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-  174 (407)
                      .-.+++.++.|.+.+ ..|..|..-|..++..+...|..+.+.|+|+.||.+|.+...  .++.+|.++|.||..++.+ 
T Consensus       232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--EVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--HHHHHHHHHHHhhhcccCCc
Confidence            345778888998777 888899999999999999999999999999999999998877  5799999999999987765 


Q ss_pred             -HHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC------CCC----
Q 040073          175 -LKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH------HQF----  242 (407)
Q Consensus       175 -~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~----  242 (407)
                       ++-.|.+.+|  |+.++++|+. ++.++++..+.+|+||++.+.-+..+..  .++..|-+-+-.+      ++.    
T Consensus       310 ~NKlai~~~~G--v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  310 SNKLAIKELNG--VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             ccchhhhhcCC--hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccccc
Confidence             7777777774  9999999987 7999999999999999988666655554  3577777654321      111    


Q ss_pred             -CHHHHHHHHHHHHHhCC-CCchHHHHHh-cCchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHh----------
Q 040073          243 -SQQASKAALKLLVELCP-WGRNRIKAVE-GGGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAE----------  304 (407)
Q Consensus       243 -~~~~~~~A~~aL~~L~~-~~~n~~~~v~-~G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~----------  304 (407)
                       +.++..++..+|+|+++ ..+.|.+|.+ .|.|..|+..+..-     .+...+|+|+.+|.||+-.-+          
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~  465 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV  465 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence             25788999999999999 6779999987 69999999988742     256788999999999964211          


Q ss_pred             ----------------------hHHHHHh------------ccCch-----HHHHHH----HH-cCCchhhHHHHHHHHH
Q 040073          305 ----------------------GRAELLK------------HGAGL-----AVVSKK----IL-RVSHAASDRAVRILCS  340 (407)
Q Consensus       305 ----------------------~r~~i~~------------~~g~i-----~~Lv~~----l~-~~s~~~~e~a~~~L~~  340 (407)
                                            -+.+.-+            ...|+     |.+|+.    |. ...+...|.++.+|-+
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence                                  0001000            01011     223332    22 1247789999999999


Q ss_pred             HhccCC--chHHHHHH-HHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          341 VCKFSA--TARVLQEM-LQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       341 l~~~~~--~~~~~~~~-~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++-...  ...++..+ .+..++++|+++|+.+ ++.+.+.++.+|+.|++.
T Consensus       546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             hhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence            998654  23355555 5678899999999965 788888899999999874

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=5e-13  Score=122.25  Aligned_cols=195  Identities=14%  Similarity=0.219  Sum_probs=166.2

Q ss_pred             CChhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           95 VDKTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      ++++.++.|+..|+.. + ..+..++..+.+.+.. +.+++.+.+.|+++.+.++|.+++.  .+++.|+++|.|++.+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~--~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNP--SVREKALNALNNLSVND   85 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCCh--HHHHHHHHHHHhcCCCh
Confidence            6788999999999854 3 7889999999998775 8999999999999999999999876  56999999999999887


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHH
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA  250 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A  250 (407)
                      + ++..+..    .++.+.+...+.  +.+.+..+.++|.+|+..++....+.   +.++.|+.+|..|   +..++..+
T Consensus        86 e-n~~~Ik~----~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G---~~~~k~~v  154 (254)
T PF04826_consen   86 E-NQEQIKM----YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSG---SEKTKVQV  154 (254)
T ss_pred             h-hHHHHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcC---ChHHHHHH
Confidence            6 4555542    577787766554  67888999999999987766655543   4699999999998   99999999


Q ss_pred             HHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          251 LKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       251 ~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      +++|.||+.++.+...++.++++..++.++....+.++...++....+|..+-
T Consensus       155 Lk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  155 LKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999988656788899999999997643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.52  E-value=3.2e-12  Score=128.94  Aligned_cols=284  Identities=13%  Similarity=0.136  Sum_probs=209.1

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChh--HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSER--NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE-  172 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-  172 (407)
                      -++|+.|+..+.++. ++|..|..+|++|.-.+..  |+-.|.+.++|+.++++|+...+. ++++.+..+|+||+..+ 
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-ev~e~iTg~LWNLSS~D~  352 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-EVRELITGILWNLSSNDA  352 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-HHHHHHHHHHhcccchhH
Confidence            457899999998888 9999999999999876544  999999999999999999964321 23555555555554442 


Q ss_pred             -----------------------------------------------------hHHHhHhhccchhhHHHHHHHHhc---
Q 040073          173 -----------------------------------------------------SYLKSIVINNGEEFLESLMRVLKC---  196 (407)
Q Consensus       173 -----------------------------------------------------~~~~~~i~~~gg~~i~~Lv~lL~~---  196 (407)
                                                                           ++.++.+.+..| .|..|+..+++   
T Consensus       353 lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~G-LIdaL~~~iq~~i~  431 (717)
T KOG1048|consen  353 LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDG-LIDALLFSIQTAIQ  431 (717)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccc-hHHHHHHHHHHHHH
Confidence                                                                 233444444443 78888877763   


Q ss_pred             ---CChhHHHHHHHHHHHhhccCC-------------------------c-------hhh--------------h-----
Q 040073          197 ---GNYQSRSYAIMLLKSIFEVAD-------------------------P-------FQL--------------I-----  222 (407)
Q Consensus       197 ---~~~~~~~~a~~~L~~Ls~~~~-------------------------~-------~~~--------------i-----  222 (407)
                         -+....++++-+|+||+..-+                         .       ++.              .     
T Consensus       432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~  511 (717)
T KOG1048|consen  432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS  511 (717)
T ss_pred             hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence               355667999999999974322                         0       000              0     


Q ss_pred             --hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-----hHHHH-HhcCchHHHHHHhhcccchhHHHHHHH
Q 040073          223 --SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-----NRIKA-VEGGGVSVLVDLLLDVTERRVCELMLN  294 (407)
Q Consensus       223 --~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-----n~~~~-v~~G~v~~Lv~lL~~~~~~~~~~~al~  294 (407)
                        .-...+|.+=..+|...  .++...++++.||-||+....     .+..+ ..+.+.|.|+++|..+ +..++..+++
T Consensus       512 e~Lw~p~vVr~Yl~Ll~~s--~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~  588 (717)
T KOG1048|consen  512 EWLWHPSVVRPYLLLLALS--KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAG  588 (717)
T ss_pred             eeeecHHHHHHHHHHHHHh--cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHH
Confidence              00112333334444433  378899999999999998543     34444 5678899999999997 8899999999


Q ss_pred             HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC------chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh
Q 040073          295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS------HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ  368 (407)
Q Consensus       295 ~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s------~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~  368 (407)
                      +|.||+.+..+|..|..  .+|+-||..|-...      ....-.++.+|+++...+.  +....+.+.+++++|+.+..
T Consensus       589 ~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~--~nAkdl~~~~g~~kL~~I~~  664 (717)
T KOG1048|consen  589 ALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV--LNAKDLLEIKGIPKLRLISK  664 (717)
T ss_pred             HHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH--HHHHHHHhccChHHHHHHhc
Confidence            99999999999987764  68999999775542      4556677888999986433  35788889999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhh
Q 040073          369 VDASVKTKERAREILKLNARA  389 (407)
Q Consensus       369 ~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +.-+++.-+.|..+|..|-.+
T Consensus       665 s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  665 SQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             ccCCHHHHHHHHHHHHHHHHH
Confidence            877999999999998776543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=1.6e-12  Score=118.92  Aligned_cols=199  Identities=14%  Similarity=0.100  Sum_probs=170.2

Q ss_pred             hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073          186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~  264 (407)
                      -++.|+.+|+. .++.+++.+..++.+.+..+.+...+.. .|+++.+..+|.++   ++.++..|+.+|.||+.+.+|+
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p---~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDP---NPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCC---ChHHHHHHHHHHHhcCCChhhH
Confidence            58999999996 5899999999999999877766555555 68899999999998   9999999999999999999999


Q ss_pred             HHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          265 IKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                      ..+-.  .++.+.+.+.+.+ +..++..++.+|.+|+..++++..+..   .++.++.++..++...+.+++++|++|+.
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            88644  5788887766543 678889999999999998887766643   69999999999999999999999999996


Q ss_pred             cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCC
Q 040073          344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCV  396 (407)
Q Consensus       344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~~~  396 (407)
                         +.....+++.++++..++.+++.+.+...-..+-.+...+.++++...-+
T Consensus       164 ---np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~  213 (254)
T PF04826_consen  164 ---NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV  213 (254)
T ss_pred             ---CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence               45578999999999999999997777888899999999998888766443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.49  E-value=1.3e-14  Score=94.02  Aligned_cols=40  Identities=35%  Similarity=0.699  Sum_probs=31.7

Q ss_pred             CccccccCcCceecCCcccccHHHHHHHHhcCCC--CCCccc
Q 040073           12 CPISLQLMRDPVTVSTGITYDRVNIERWLFTCKN--NTCPVT   51 (407)
Q Consensus        12 Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~--~~cP~~   51 (407)
                      ||||+++|+|||+++|||+||++||++||++.+.  ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999999999999999999999986422  579986

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.38  E-value=6.2e-10  Score=112.75  Aligned_cols=284  Identities=18%  Similarity=0.172  Sum_probs=220.8

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      +...+.+..-|.+++ ..|.-+++.|.+++.++......+.+.+.++.++.+|.+++.  .+...|+.+|..++.+....
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~~~~~~  153 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLASHPEGL  153 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhCCchhH
Confidence            344456666677777 888899999999998877777888889999999999998876  46899999999999887655


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      ..++ ..+  .+..|..++...+..+|.++..++.+++...+.....+...|+++.+++.|.++   |.=++.+++..|.
T Consensus       154 ~~l~-~~~--~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d---DiLvqlnalell~  227 (503)
T PF10508_consen  154 EQLF-DSN--LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD---DILVQLNALELLS  227 (503)
T ss_pred             HHHh-Ccc--hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc---cHHHHHHHHHHHH
Confidence            5444 344  589999999888889999999999999988877777777779999999999987   8999999999999


Q ss_pred             HhCCCCchHHHHHhcCchHHHHHHhhcc----------------------------------------------cchhHH
Q 040073          256 ELCPWGRNRIKAVEGGGVSVLVDLLLDV----------------------------------------------TERRVC  289 (407)
Q Consensus       256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~----------------------------------------------~~~~~~  289 (407)
                      .|+..+.+..-+.+.|+++.|..++.+.                                              .+...+
T Consensus       228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~  307 (503)
T PF10508_consen  228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR  307 (503)
T ss_pred             HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            9999888999999999999999876531                                              134566


Q ss_pred             HHHHHHHHHHhcCHhhHHHH-HhccCchHHHHHHHHcC----CchhhHHHHHHHHHHhccCCc---h---HHHHHHH---
Q 040073          290 ELMLNVLDLLCRCAEGRAEL-LKHGAGLAVVSKKILRV----SHAASDRAVRILCSVCKFSAT---A---RVLQEML---  355 (407)
Q Consensus       290 ~~al~~L~~L~~~~~~r~~i-~~~~g~i~~Lv~~l~~~----s~~~~e~a~~~L~~l~~~~~~---~---~~~~~~~---  355 (407)
                      ..|+.+|..++.+.+|+..+ ...+..+...++.+...    +...+..++.+|.++-....+   +   .+.....   
T Consensus       308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~  387 (503)
T PF10508_consen  308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL  387 (503)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence            78889999999999999988 55455566666655442    356788999999999543322   1   1122222   


Q ss_pred             HhChHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          356 QVGVVS-KLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       356 ~~g~i~-~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..+... .++.+++ .+=+..|-.|-.+|+.+..+
T Consensus       388 ~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  388 SGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             cCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcC
Confidence            223444 5566666 33589999999999988774

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=2.7e-11  Score=127.57  Aligned_cols=229  Identities=14%  Similarity=0.103  Sum_probs=184.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-ChhHHHhHhhccchhhHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNV-SESYLKSIVINNGEEFLES  189 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~i~~~gg~~i~~  189 (407)
                      ..|.+|+++|-+|...+..||..+-. -|+++.+|..|.+..+  ++....+.+|.||+= .+.+.++++.+.|  .+..
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe--eL~QV~AsvLRNLSWRAD~nmKkvLrE~G--sVta  441 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE--ELLQVYASVLRNLSWRADSNMKKVLRETG--SVTA  441 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH--HHHHHHHHHHHhccccccccHHHHHHhhh--hHHH
Confidence            56788999999999888888877775 8999999999987765  456777789999864 3445588888877  4555


Q ss_pred             HH-HHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCC----CCc
Q 040073          190 LM-RVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCP----WGR  262 (407)
Q Consensus       190 Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~----~~~  262 (407)
                      |+ ..|...+.........+|+||+.+. +|+..|+.-.|++.+||.+|.-+++ ....+.+.|-..|+|.++    .++
T Consensus       442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~  521 (2195)
T KOG2122|consen  442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED  521 (2195)
T ss_pred             HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence            55 5566667677888999999999875 6788888888999999999974311 145789999999999776    466


Q ss_pred             hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073          263 NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV  341 (407)
Q Consensus       263 n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l  341 (407)
                      .|..+.+.+.+..|++.|++. +-.++.+++++||||.. +++.++.+++ .|+|+.|-.+|........+.++.+|.|+
T Consensus       522 yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNL  599 (2195)
T KOG2122|consen  522 YRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNL  599 (2195)
T ss_pred             HHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            888888999999999999997 77889999999999976 6777888887 57899998877766677788888999999


Q ss_pred             hccCC
Q 040073          342 CKFSA  346 (407)
Q Consensus       342 ~~~~~  346 (407)
                      ..+.+
T Consensus       600 ln~RP  604 (2195)
T KOG2122|consen  600 LNFRP  604 (2195)
T ss_pred             hcCCc
Confidence            87653

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.28  E-value=2.1e-12  Score=110.55  Aligned_cols=61  Identities=28%  Similarity=0.553  Sum_probs=51.4

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC--------------CCCCCccccccccccCCCCCCccH
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC--------------KNNTCPVTKQVLQETDLTSTTPNH   67 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~--------------~~~~cP~~~~~~~~~~~~~l~~n~   67 (407)
                      ++..++|.||||.+.++|||+++|||.||+.||.+|+...              +...||.|+..++..   .++|.+
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~---~LvPiy   87 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA---TLVPIY   87 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh---cEEEee
Confidence            4567789999999999999999999999999999998521              246899999999774   777764

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.27  E-value=4.1e-12  Score=121.82  Aligned_cols=71  Identities=20%  Similarity=0.370  Sum_probs=62.6

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN   80 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~   80 (407)
                      .+...|.||||.++|.+||+++|||+||+.||.+|+..  ...||.|+.++...   .+.+|..|.++|+.|....
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~---~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQES---KLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccc---cCccchHHHHHHHHHHHhh
Confidence            35677999999999999999999999999999999975  55899999998764   7899999999999996543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.25  E-value=1e-10  Score=94.72  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=100.8

Q ss_pred             hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          225 KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       225 ~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      ..|+++.|+++|.++   +...+..++.+|.+++.. ++.+..+++.|+++.++++|.+. +..++..++++|.+|+...
T Consensus         5 ~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           5 QAGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HcCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence            357899999999988   899999999999999997 77888999999999999999986 8899999999999999977


Q ss_pred             hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073          304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC  342 (407)
Q Consensus       304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~  342 (407)
                      ..........|+++.+++.+...+...++.++.+|.+++
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            544444334689999999888888899999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.23  E-value=3.2e-09  Score=107.63  Aligned_cols=251  Identities=20%  Similarity=0.164  Sum_probs=189.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073          100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV  179 (407)
Q Consensus       100 i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i  179 (407)
                      +..+++.|... +....++..++......+.     .+....+.+...|...+.  +..+.+..+|..+-... ......
T Consensus         5 ~~~~l~~l~~~-~~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~~~~~--e~v~~~~~iL~~~l~~~-~~~~l~   75 (503)
T PF10508_consen    5 INELLEELSSK-AERLEALPELKTELSSSPF-----LERLPEPVLFDCLNTSNR--EQVELICDILKRLLSAL-SPDSLL   75 (503)
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHhhcCh--HHHHHHHHHHHHHHhcc-CHHHHH
Confidence            45666666655 5667777777775443221     111112337777776543  22556666666544322 223332


Q ss_pred             hccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          180 INNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       180 ~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                        .+  ..+.|...|.++++.+|..++..|.++..+.+....+....++++.++..+.++   +.++.+.|+.+|.+|+.
T Consensus        76 --~~--~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~  148 (503)
T PF10508_consen   76 --PQ--YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLAS  148 (503)
T ss_pred             --HH--HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhC
Confidence              22  688999999999999999999999999887776666667779999999999998   99999999999999999


Q ss_pred             CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073          260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC  339 (407)
Q Consensus       260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~  339 (407)
                      .+.+...+++.+.+..|..++... +..++-+++.++..++...+.-...+...|.++.+++.+.+.+...+.+|+.+|.
T Consensus       149 ~~~~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~  227 (503)
T PF10508_consen  149 HPEGLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS  227 (503)
T ss_pred             CchhHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence            888888888999999999999885 6678889999999998754444444444788999999887766788999999999


Q ss_pred             HHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073          340 SVCKFSATARVLQEMLQVGVVSKLCLVLQVD  370 (407)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~  370 (407)
                      .++....   ....+.+.|++++|..++...
T Consensus       228 ~La~~~~---g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  228 ELAETPH---GLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             HHHcChh---HHHHHHhCCHHHHHHHHHhcc
Confidence            9998332   478888999999999999743

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.23  E-value=1.5e-10  Score=93.86  Aligned_cols=112  Identities=22%  Similarity=0.233  Sum_probs=98.2

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-chH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~  264 (407)
                      .++.|+.+|++++...+..++.+|.+++...+.........|+++.|+.+|.++   ++.++..++++|++|+... ..+
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~   84 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLAAGPEDNK   84 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHccCcHHHH
Confidence            699999999999999999999999999987444443444458899999999998   9999999999999999976 466


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      ..+.+.|+++.|+++|.+. +..+++.++++|.+|+.
T Consensus        85 ~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          85 LIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            7778899999999999987 78999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.20  E-value=3.6e-09  Score=100.02  Aligned_cols=264  Identities=13%  Similarity=0.142  Sum_probs=196.3

Q ss_pred             HHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-CC-----chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073          117 CLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-GS-----DECDEALSILYHLNVSESYLKSIVINNGEEFLESL  190 (407)
Q Consensus       117 al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-~~-----~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L  190 (407)
                      ..+.|...+ +++..+-.++++|.++.++.+++.... +.     .....+......+..+++.-.. +...+ +++..+
T Consensus       244 ~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~-L~~~p-~~l~~~  320 (604)
T KOG4500|consen  244 IFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQK-LHADP-QFLDFL  320 (604)
T ss_pred             HHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHH-HhcCc-HHHHHH
Confidence            444555554 457889999999999999999987322 11     1233344444455556654344 44344 599999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCC--CCCHHHHHHHHHHHHHhCCCCchHHHHH
Q 040073          191 MRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH--QFSQQASKAALKLLVELCPWGRNRIKAV  268 (407)
Q Consensus       191 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~~~A~~aL~~L~~~~~n~~~~v  268 (407)
                      +..+.+.+......++.+|.|++..++.+..++. .|++..|+++|....  ..+.+.+.+++.||+||...-.||..++
T Consensus       321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~  399 (604)
T KOG4500|consen  321 ESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA  399 (604)
T ss_pred             HHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence            9999999999999999999999999998888877 589999999886310  0277899999999999999999999999


Q ss_pred             hcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCc--h---hhHHHHHHHHHHh
Q 040073          269 EGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSH--A---ASDRAVRILCSVC  342 (407)
Q Consensus       269 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~--~---~~e~a~~~L~~l~  342 (407)
                      .+|.+++++..+... .+.++-+-+++|+-+-...+. -.++..    =|.++..+.++++  .   ..-...+.|.-+-
T Consensus       400 ~aGvteaIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~k----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lI  474 (604)
T KOG4500|consen  400 PAGVTEAILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAK----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLI  474 (604)
T ss_pred             ccchHHHHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhc----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence            999999999999886 788888889998888665442 223333    2566666666542  1   2344567777788


Q ss_pred             ccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          343 KFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      +++....+...+.+.|+|..++.++.++ .-..+..|...|-.+...|
T Consensus       475 kHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~y  521 (604)
T KOG4500|consen  475 KHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKY  521 (604)
T ss_pred             HhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHh
Confidence            8876667889999999999999999865 5666777766666666544

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=99.16  E-value=1.1e-11  Score=85.72  Aligned_cols=45  Identities=31%  Similarity=0.632  Sum_probs=33.0

Q ss_pred             cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073            9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQ   53 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~   53 (407)
                      .++||||++.|+|||+. .|||+|+|.+|.+|+...+...||+.|.
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC   56 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGC   56 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-
T ss_pred             ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCC
Confidence            48999999999999986 7999999999999996555678999763

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.10  E-value=3.8e-11  Score=77.71  Aligned_cols=37  Identities=19%  Similarity=0.522  Sum_probs=24.0

Q ss_pred             CccccccCcC----ceecCCcccccHHHHHHHHhcC--CCCCCc
Q 040073           12 CPISLQLMRD----PVTVSTGITYDRVNIERWLFTC--KNNTCP   49 (407)
Q Consensus        12 Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~--~~~~cP   49 (407)
                      ||||.+ |.+    |++++|||+||+.||++++..+  +.+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999864  356787

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.10  E-value=9.2e-09  Score=98.19  Aligned_cols=239  Identities=15%  Similarity=0.126  Sum_probs=165.5

Q ss_pred             cHHHHHHHhhcc-CCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073          140 AIEFLATIITKS-DAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE  214 (407)
Q Consensus       140 ~i~~Lv~lL~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~  214 (407)
                      ....++++|..- .. .+.....+..+..+...++...+.+...    .+.....++.++.+++..++..|+.+|..|..
T Consensus        56 ~~~~~l~lL~~~~~~-~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSN-DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467778888776 33 3457888888888776665555555541    11257788889999999999999999999987


Q ss_pred             cCCchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHh------hcccchh
Q 040073          215 VADPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL------LDVTERR  287 (407)
Q Consensus       215 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL------~~~~~~~  287 (407)
                      ..+....... .+.++.+++.+++... .+.+.+..|+.+|.+|...+..|..+.+.|+++.|..+|      .+..+..
T Consensus       135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            7655443322 4678888888875300 044567999999999999999999999999999999999      2333567


Q ss_pred             HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073          288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV  366 (407)
Q Consensus       288 ~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l  366 (407)
                      +.-.++-+++.|+-+++....+..+ +.|+.|++.+... .++....++.+|.|+.....+. ....|+..|++ +++..
T Consensus       214 l~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-~~~~mv~~~~l-~~l~~  290 (312)
T PF03224_consen  214 LQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-NIELMVLCGLL-KTLQN  290 (312)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-HHHHHHHH-HH-HHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-HHHHHHHccHH-HHHHH
Confidence            7889999999999999998888875 5899999977665 4788999999999999876543 78888887766 55566


Q ss_pred             HhcC--CCHHHHHHHHHHH
Q 040073          367 LQVD--ASVKTKERAREIL  383 (407)
Q Consensus       367 l~~~--~~~~~k~~A~~lL  383 (407)
                      |+..  .++...+--..+-
T Consensus       291 L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  291 LSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HHSS--SSHHHHHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHHHHH
Confidence            6544  4666666544443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.10  E-value=4.9e-11  Score=76.41  Aligned_cols=38  Identities=42%  Similarity=0.831  Sum_probs=32.7

Q ss_pred             CccccccCcCc-eecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073           12 CPISLQLMRDP-VTVSTGITYDRVNIERWLFTCKNNTCPVT   51 (407)
Q Consensus        12 Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~~~~~~~~~cP~~   51 (407)
                      ||||.+.++|| |.++|||+||+.||++|++.  +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence            89999999999 57899999999999999975  5789986

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.07  E-value=2.3e-08  Score=94.68  Aligned_cols=286  Identities=12%  Similarity=0.146  Sum_probs=200.4

Q ss_pred             CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---C--CchHHHHHHHHHhc
Q 040073           95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---G--SDECDEALSILYHL  168 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~--~~~~~~a~~~L~~L  168 (407)
                      ++.+.+..|.+...|++ +.-.+.-+.|.+++-++.++|..+.+.||-..++..|+..-.   +  ......+.+.|.|-
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny  163 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY  163 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence            45566666666666776 777888999999999999999999999998888898875432   1  12244555688887


Q ss_pred             CCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHH
Q 040073          169 NVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQ  245 (407)
Q Consensus       169 ~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  245 (407)
                      ..+.++.+..+.+.|  +++.|+..+.-  .+.+.-+......++|.+. .+.-.....+....-.|++++...  ..++
T Consensus       164 ~l~~~~l~aq~~~~g--Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~--v~~d  239 (604)
T KOG4500|consen  164 ILDSRELRAQVADAG--VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM--VRED  239 (604)
T ss_pred             hCCcHHHHHHHHhcc--cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh--hccc
Confidence            777777777777776  89989888753  3555556555555555443 333334445556677788888766  5777


Q ss_pred             HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccc-------hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073          246 ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTE-------RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV  318 (407)
Q Consensus       246 ~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~-------~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~  318 (407)
                      ..+..+..|...+.++.-+-.+++.|.+..++.++..-.+       ...-..++.....|..+++.-..+...+.....
T Consensus       240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~  319 (604)
T KOG4500|consen  240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF  319 (604)
T ss_pred             hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence            8888999999999999999999999999999999987211       222334444444455556665666553222333


Q ss_pred             HHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc----CCCHHHHHHHHHHHHHHH
Q 040073          319 VSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV----DASVKTKERAREILKLNA  387 (407)
Q Consensus       319 Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~----~~~~~~k~~A~~lL~~l~  387 (407)
                      ++.-+.+.+....--+.-++.|+++.   +..+..+++.|.+.+|+++|-.    +++-+.+..+...|+.|.
T Consensus       320 ~~sw~~S~d~~l~t~g~LaigNfaR~---D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  320 LESWFRSDDSNLITMGSLAIGNFARR---DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence            33333333456677777888999974   3468899999999999999854    256677777777887764

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.6e-07  Score=94.87  Aligned_cols=267  Identities=19%  Similarity=0.234  Sum_probs=196.6

Q ss_pred             ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      ....|+.|..+..++.  ++|+.|+..|..+++   .+|..+...| +++|++.|..+....+....++.+++++..+++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence            3567899999998776  999999999999986   4788877777 699999998776544568889999988776653


Q ss_pred             ------H----------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--chhhhhchhhhHHHHHHH
Q 040073          174 ------Y----------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--PFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       174 ------~----------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~l  235 (407)
                            +          ..+++.... +.|..|+..+...+..+|..++..|.++.....  -...+....-+|..|+.+
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~q-d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQ-DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCc-hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence                  1          122333333 279999999999999999999999999976543  334455555579999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCH-hhHHHHH
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCA-EGRAELL  310 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~-~~r~~i~  310 (407)
                      |.+.   ...++..|+..|..|.....+..++|- ++++..|..++...+   +.-+++.|+..|-+|-... .++.-+.
T Consensus       175 L~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr  251 (970)
T KOG0946|consen  175 LRDS---REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR  251 (970)
T ss_pred             Hhhh---hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence            9887   677888899999999998887777766 789999999998743   2468899999999998854 4565555


Q ss_pred             hccCchHHHHHHHHcC---C-------chh---hHHHHHHHHHHhccCCc----hHHHHHHHHhChHHHHHHHHhcCC
Q 040073          311 KHGAGLAVVSKKILRV---S-------HAA---SDRAVRILCSVCKFSAT----ARVLQEMLQVGVVSKLCLVLQVDA  371 (407)
Q Consensus       311 ~~~g~i~~Lv~~l~~~---s-------~~~---~e~a~~~L~~l~~~~~~----~~~~~~~~~~g~i~~Ll~ll~~~~  371 (407)
                      + ++.||.|.++|...   +       +.-   --.++-++..+..-...    +.....+.+.+++..|..++.+++
T Consensus       252 E-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~  328 (970)
T KOG0946|consen  252 E-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG  328 (970)
T ss_pred             c-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence            5 78999999855321   1       111   12233344444432111    234456778899999999987664

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.01  E-value=2.1e-10  Score=74.46  Aligned_cols=40  Identities=33%  Similarity=0.762  Sum_probs=36.7

Q ss_pred             CccccccCcCce-ecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073           12 CPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVT   51 (407)
Q Consensus        12 Cpi~~~~~~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~   51 (407)
                      ||||.+.+.+|+ +++|||+||+.||.+|++..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 8899999999999999985457889986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PRK09687 putative lyase; Provisional

Probab=99.01  E-value=7.2e-08  Score=90.19  Aligned_cols=119  Identities=16%  Similarity=0.053  Sum_probs=71.6

Q ss_pred             hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073          228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA  307 (407)
Q Consensus       228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~  307 (407)
                      +++.|+.+|++.   ++.++..|+.+|..+....+        .+++.|+.+|.+. +..++..|+..|..+-.      
T Consensus       160 ai~~L~~~L~d~---~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~------  221 (280)
T PRK09687        160 AIPLLINLLKDP---NGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD------  221 (280)
T ss_pred             HHHHHHHHhcCC---CHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC------
Confidence            466666666665   66666666666666521111        3456666666654 56666666666655321      


Q ss_pred             HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                           ...||.|++.+.++.  ....++.+|..+..             .-+++.|..++..+.+++++.+|.+.|+
T Consensus       222 -----~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        222 -----KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             -----hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                 134667777554432  34455555555542             1367888888875668888888887775

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3.5e-10  Score=99.21  Aligned_cols=75  Identities=40%  Similarity=0.576  Sum_probs=69.6

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|+.++|.|+.++|+|||+.|+|.||+|.-|++++.+- ..+.|+|+.+++..   +++||.+|+..|..|...|.
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rv-ghfdpvtr~~Lte~---q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRV-GHFDPVTRWPLTEY---QLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHh-ccCCchhcccCCHH---hhccchHHHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999999875 45799999999985   99999999999999998876

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.90  E-value=6e-10  Score=101.36  Aligned_cols=66  Identities=17%  Similarity=0.326  Sum_probs=59.1

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~   78 (407)
                      .-++|-||.++|+-||+++||||||--||.+++..  +..||.|..++.+ +  .|..|+.+-.+|+.+..
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~E-s--~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTE-S--DLRNNRILDEIVKSLNF   87 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccch-h--hhhhhhHHHHHHHHHHH
Confidence            34799999999999999999999999999999975  7899999999988 4  89999998888888744

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2.2e-07  Score=89.18  Aligned_cols=271  Identities=15%  Similarity=0.165  Sum_probs=171.2

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI  180 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~  180 (407)
                      -|++.|.-++ +...-...-|..++-- .+|+..+.+.|.|+.|++++...++  +.+...+..|.|++.+.....+++ 
T Consensus       308 mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~--dL~~~tl~LlfNlSFD~glr~KMv-  383 (791)
T KOG1222|consen  308 MLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHP--DLRKATLMLLFNLSFDSGLRPKMV-  383 (791)
T ss_pred             HHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCH--HHHHHHHHHhhhccccccccHHHh-
Confidence            3444444343 3333444566666665 6899999999999999999987766  568888999999998875444544 


Q ss_pred             ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                      ..|  .+|.|+.+|.+.+.  ..-|..+|..++..++.+..+ ....+|+.|...+-.+  .+.++-..-...-.|||.+
T Consensus       384 ~~G--llP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mf-ayTdci~~lmk~v~~~--~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  384 NGG--LLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMF-AYTDCIKLLMKDVLSG--TGSEVDLALIALCINLCLN  456 (791)
T ss_pred             hcc--chHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHH-HHHHHHHHHHHHHHhc--CCceecHHHHHHHHHHHhc
Confidence            344  89999999976433  356788888887666655544 4467899888765443  1222222222222355554


Q ss_pred             CchHHHHHhcCch-------------------------------------HHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          261 GRNRIKAVEGGGV-------------------------------------SVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       261 ~~n~~~~v~~G~v-------------------------------------~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      ..|...+++..++                                     .-|...+....+....-+++++|.+|...+
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d  536 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD  536 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence            4444333332233                                     333344433335567789999999999987


Q ss_pred             hhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHH
Q 040073          304 EGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERA  379 (407)
Q Consensus       304 ~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A  379 (407)
                      -....|......||-+-..+.-+.  +...-..+-.+..++   .+..+......+|.|+.|+++|++.  .++-+.+--
T Consensus       537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a---~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qii  613 (791)
T KOG1222|consen  537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA---RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQII  613 (791)
T ss_pred             CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh---hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHH
Confidence            778888887888888777655442  222222333333333   3445666777899999999999863  133333333


Q ss_pred             HHHHHHH
Q 040073          380 REILKLN  386 (407)
Q Consensus       380 ~~lL~~l  386 (407)
                      -..++.+
T Consensus       614 yVF~Q~l  620 (791)
T KOG1222|consen  614 YVFLQFL  620 (791)
T ss_pred             HHHHHHH
Confidence            3344443

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.89  E-value=4.7e-10  Score=77.47  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHH
Q 040073            8 AHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLI   73 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I   73 (407)
                      .-++|++|.++|++||.+ .|.|.||+.||.+.+..    -||+|..+.+..   ++.-|+.|.++|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw~q---D~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAWIQ---DIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S-S---S----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHHHH---HHHhhhhhhccC
Confidence            347999999999999965 69999999999886632    399999998775   888899988776

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.87  E-value=1.5e-09  Score=73.66  Aligned_cols=47  Identities=28%  Similarity=0.477  Sum_probs=41.0

Q ss_pred             CcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCcccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      +++.|+||++-+.+++..+|||. ||..|+.+|+..  ...||+|+++++
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR--KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc--CCCCCcCChhhc
Confidence            46899999999999999999999 999999999973  789999998774

...

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=6.7e-08  Score=92.67  Aligned_cols=193  Identities=18%  Similarity=0.154  Sum_probs=149.2

Q ss_pred             HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc
Q 040073          158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR  237 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~  237 (407)
                      ...|+-.|.||+.+-..--++... +  .+..||+.|...+.+........|..|+...+++..+.. .|.+..|+++..
T Consensus       280 Lrva~ylLlNlAed~~~ElKMrrk-n--iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klfp  355 (791)
T KOG1222|consen  280 LRVAVYLLLNLAEDISVELKMRRK-N--IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHH-h--HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhcC
Confidence            455667788888655332344443 3  799999999999999999999999999999998887766 589999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073          238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA  317 (407)
Q Consensus       238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~  317 (407)
                      ..   +++.++..+..|.||+-...++.+++..|.+|.|..+|.+..   -..-|+.+|..++..++.+..+.. ...|+
T Consensus       356 ~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~  428 (791)
T KOG1222|consen  356 IQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAY-TDCIK  428 (791)
T ss_pred             CC---CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHH-HHHHH
Confidence            88   999999999999999999999999999999999999998752   234588999999998888877765 56899


Q ss_pred             HHHHHHHcCC-chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH
Q 040073          318 VVSKKILRVS-HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC  364 (407)
Q Consensus       318 ~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll  364 (407)
                      .+++.+..++ .+....-++.-.++|...++   .+.+.+-.++..|+
T Consensus       429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN---aQlvceGqgL~~LM  473 (791)
T KOG1222|consen  429 LLMKDVLSGTGSEVDLALIALCINLCLNKRN---AQLVCEGQGLDLLM  473 (791)
T ss_pred             HHHHHHHhcCCceecHHHHHHHHHHHhcccc---ceEEecCcchHHHH
Confidence            9999888765 34433334444677765444   33344434444443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.83  E-value=2.4e-07  Score=88.49  Aligned_cols=206  Identities=14%  Similarity=0.176  Sum_probs=143.9

Q ss_pred             hHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhch------hhhHHHHHHHcccCCCCCHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVK------QEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      +++...|+.....++.+|+.  .+.++.+.....+..+...++.....+..      .....++++++..+   +..++.
T Consensus        47 ~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---D~~i~~  123 (312)
T PF03224_consen   47 ELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---DSFIQL  123 (312)
T ss_dssp             ---------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---SHHHHH
T ss_pred             HHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---CHHHHH
Confidence            34443332356677777764  58999999999999998877766555443      12678899999888   999999


Q ss_pred             HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH--
Q 040073          249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI--  323 (407)
Q Consensus       249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l--  323 (407)
                      .|+..|..|....+.+..-...+.++.+++.|.+.   .+.+....++.+|.+|...++.|..+.+ .+|++.++..+  
T Consensus       124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~  202 (312)
T PF03224_consen  124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRK  202 (312)
T ss_dssp             HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHh
Confidence            99999999988766555544467788898888763   1456678999999999999999999998 68999999977  


Q ss_pred             ---HcC--CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          324 ---LRV--SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       324 ---~~~--s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                         ...  +...+-+++-++|.++.   +.+....+.+.+.|+.|+.+++....+++-+-+-.+|++|-..
T Consensus       203 ~~~~~~~~~~Ql~Y~~ll~lWlLSF---~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  203 QATNSNSSGIQLQYQALLCLWLLSF---EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             --------HHHHHHHHHHHHHHHTT---SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             hcccCCCCchhHHHHHHHHHHHHhc---CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence               122  25668889999999995   5668899999999999999999877888888888888887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=7.4e-07  Score=90.78  Aligned_cols=259  Identities=16%  Similarity=0.160  Sum_probs=191.1

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHh-hhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSIT-LQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~-~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      ...+.+|++.|.+. + ..|.+|+.+|+.+. ..+++.-..+--.-++|.|+.+|.+.... +.+..|.++|.+|+.--+
T Consensus       166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~-DIMl~AcRaltyl~evlP  244 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF-DIMLLACRALTYLCEVLP  244 (1051)
T ss_pred             hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHhhcc
Confidence            45678888888755 5 77889999988864 33444444444456799999999987763 359999999999997666


Q ss_pred             HHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      ....++.+.+  +||.|+.-|.. .-.++-+++..+|..|+..+.  +.+.. +|++-..+..|.=-   +..+++.|+.
T Consensus       245 ~S~a~vV~~~--aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDFF---Si~aQR~Ala  316 (1051)
T KOG0168|consen  245 RSSAIVVDEH--AIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDFF---SIHAQRVALA  316 (1051)
T ss_pred             chhheeeccc--chHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHHH---HHHHHHHHHH
Confidence            6777888776  89999977765 678889999999999986543  33444 57788888888655   7889999999


Q ss_pred             HHHHhCCC--CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcC
Q 040073          253 LLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRV  326 (407)
Q Consensus       253 aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~  326 (407)
                      +-.|+|..  .+.-..+++  ++|.|..+|... +....+.++-.+..++.    .++--.++..+ +.|....+++.-.
T Consensus       317 iaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt  392 (1051)
T KOG0168|consen  317 IAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVT  392 (1051)
T ss_pred             HHHHHHhcCCCccchHHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcC
Confidence            99999983  344445555  599999999887 78888988888888876    23334555554 5677666655432


Q ss_pred             ----CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073          327 ----SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD  370 (407)
Q Consensus       327 ----s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~  370 (407)
                          +....-..+..|..+|++++.  .+....+.+....|-.+|+..
T Consensus       393 ~t~Ls~~~~~~vIrmls~msS~~pl--~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  393 PTILSNGTYTGVIRMLSLMSSGSPL--LFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             cccccccchhHHHHHHHHHccCChH--HHHHHHHhhHHHHHHHHHhcc
Confidence                233455556777777776554  577777888888888888744

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.78  E-value=4.1e-09  Score=94.49  Aligned_cols=49  Identities=20%  Similarity=0.360  Sum_probs=41.4

Q ss_pred             CCCcccCccccccCcCc--------eecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073            6 VPAHFLCPISLQLMRDP--------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dP--------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      ..++..||||++.+.+|        |+.+|||+||+.||.+|+..  +.+||.|+.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence            45678999999987764        56789999999999999864  779999998764

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.77  E-value=2.8e-09  Score=70.25  Aligned_cols=40  Identities=38%  Similarity=0.792  Sum_probs=34.1

Q ss_pred             cCccccccCc---CceecCCcccccHHHHHHHHhcCCCCCCcccc
Q 040073           11 LCPISLQLMR---DPVTVSTGITYDRVNIERWLFTCKNNTCPVTK   52 (407)
Q Consensus        11 ~Cpi~~~~~~---dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~   52 (407)
                      .||||++.|.   .++.++|||.|+++||.+|++.  +.+||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence            4999999994   5668899999999999999986  67999995

...

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=7.8e-07  Score=90.60  Aligned_cols=202  Identities=14%  Similarity=0.122  Sum_probs=153.8

Q ss_pred             HHHHHHHHH-hcCCChhHHHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073          158 CDEALSILY-HLNVSESYLKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       158 ~~~a~~~L~-~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l  235 (407)
                      +.+|+.-|+ +|.+++++.-..+--.  .++|.|+.+|+.. +.++...|+++|.+|+..-+....+++..++||.|+.-
T Consensus       185 Qleal~Elce~L~mgnEesLs~fpv~--slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~k  262 (1051)
T KOG0168|consen  185 QLEALTELCEMLSMGNEESLSGFPVK--SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEK  262 (1051)
T ss_pred             HHHHHHHHHHHHhhcchhhhccccHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHh
Confidence            555555555 3556665543333322  3899999999974 89999999999999998877777777778999999976


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc--CHhhHHHHHhcc
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR--CAEGRAELLKHG  313 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~--~~~~r~~i~~~~  313 (407)
                      |..=  ...++.+.++.||-.|+..+  -+.+.++|++...+..|.=- +..++..|+++-.|+|.  .++.-.-+++  
T Consensus       263 L~~I--eyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--  335 (1051)
T KOG0168|consen  263 LLTI--EYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME--  335 (1051)
T ss_pred             hhhh--hhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH--
Confidence            6543  17899999999999998743  45789999999999988655 67889999999999997  3455555555  


Q ss_pred             CchHHHHHHHHcCCchhhHHHHHHHHHHhccC-CchHHHHHHHHhChHHHHHHHHhc
Q 040073          314 AGLAVVSKKILRVSHAASDRAVRILCSVCKFS-ATARVLQEMLQVGVVSKLCLVLQV  369 (407)
Q Consensus       314 g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~-~~~~~~~~~~~~g~i~~Ll~ll~~  369 (407)
                       .+|.|-.++...+.+.-|.++.++..++... ...+..+++.+.|.|.....+|..
T Consensus       336 -alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  336 -ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             -HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence             5899888777777888888888888877643 233467777778888777766643

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.74  E-value=8.3e-06  Score=79.89  Aligned_cols=255  Identities=13%  Similarity=0.070  Sum_probs=182.1

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE  214 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~  214 (407)
                      ..+..++++|...... +.....+..+..|...++.....+.+.    . .....++.+|.+++.-+...|..+|..+..
T Consensus        53 ~y~~~~l~ll~~~~~~-d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~-~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          53 QYVKTFVNLLSQIDKD-DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKK-KTWEPFFNLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhchHHHHHHHHHhhccc-cchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence            4577888888876553 347777777777766665544555442    2 256788889998899999999999999876


Q ss_pred             cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc-chhHHHHHH
Q 040073          215 VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELML  293 (407)
Q Consensus       215 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al  293 (407)
                      ....+..-....-.+.-|...+++.  .+...+..++.+|..|...++.|..+.+.++++.|+.+|.... +..+.-.++
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l  208 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI  208 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence            5432211111111334455666654  2578888899999999999999999999999999999998753 457778999


Q ss_pred             HHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhHHHHHHHHHHhccCC----chHHHHHHHHhChHHHHHHHHh
Q 040073          294 NVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASDRAVRILCSVCKFSA----TARVLQEMLQVGVVSKLCLVLQ  368 (407)
Q Consensus       294 ~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~----~~~~~~~~~~~g~i~~Ll~ll~  368 (407)
                      -+++.|+-.+++...... .+.|+.++..+.... ++....++.+|.|+...+.    .......|+..|. ++++..|+
T Consensus       209 l~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~  286 (429)
T cd00256         209 FCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLE  286 (429)
T ss_pred             HHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHh
Confidence            999999998876555443 678999999776543 7889999999999998542    2335667777775 56667776


Q ss_pred             cC--CCHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 040073          369 VD--ASVKTKERAREILKLNARAWRDSPCVPAH  399 (407)
Q Consensus       369 ~~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~~  399 (407)
                      ..  .++...+--..+-..|.+....-+..+-|
T Consensus       287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y  319 (429)
T cd00256         287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY  319 (429)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            55  58888888777777777765444444433

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.5e-06  Score=81.33  Aligned_cols=183  Identities=22%  Similarity=0.189  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      +.+..|+..|..++.+ =+|...+...|+...|+..|.+.+.  .+++.|+++|+....+++..+..+.+.|  +++.|+
T Consensus        98 e~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~--~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll  172 (342)
T KOG2160|consen   98 EDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDA--ELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLL  172 (342)
T ss_pred             HHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcH--HHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHH
Confidence            8889999999999986 6889999999999999999998877  5699999999999998888888888776  799999


Q ss_pred             HHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHh
Q 040073          192 RVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVE  269 (407)
Q Consensus       192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~  269 (407)
                      ..|.+ ++..++.+|..++.+|..+...-..-+...++...|...|+++ +.+...+..++..+.+|...+. .+..+-.
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            99986 4677889999999999887765444433344589999999873 1277899999999999888544 4444444


Q ss_pred             cCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          270 GGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       270 ~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .|....+..+.... +.++.+.++.++-.+..
T Consensus       252 ~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSL-DFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence            56555555555554 66777777776665544

>PRK09687 putative lyase; Provisional

Probab=98.73  E-value=1e-06  Score=82.47  Aligned_cols=195  Identities=14%  Similarity=0.023  Sum_probs=126.5

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHhhccCCc
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      +++.+..++.+.+.  .++..|+++|..|......     . .  .+++.|..+ ++..+..+|..|+.+|.++......
T Consensus        55 ~~~~l~~ll~~~d~--~vR~~A~~aLg~lg~~~~~-----~-~--~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~  124 (280)
T PRK09687         55 VFRLAIELCSSKNP--IERDIGADILSQLGMAKRC-----Q-D--NVFNILNNLALEDKSACVRASAINATGHRCKKNPL  124 (280)
T ss_pred             HHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCccc-----h-H--HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc
Confidence            45666666665544  4577788888776542211     1 1  157777766 4556777888888888877432211


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL  298 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  298 (407)
                           ....++..|...+.++   +..++..|+.+|..+.          ...+++.|+.+|.+. +..++..|+.+|..
T Consensus       125 -----~~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~  185 (280)
T PRK09687        125 -----YSPKIVEQSQITAFDK---STNVRFAVAFALSVIN----------DEAAIPLLINLLKDP-NGDVRNWAAFALNS  185 (280)
T ss_pred             -----cchHHHHHHHHHhhCC---CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCC-CHHHHHHHHHHHhc
Confidence                 1134566777777776   7788888888875442          122688888888875 67888888888887


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      +....         ...++.|+..+.+.+..++..|+..|..+-    +         .-+++.|+..|+.+ .  .+..
T Consensus       186 ~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~---------~~av~~Li~~L~~~-~--~~~~  240 (280)
T PRK09687        186 NKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRK----D---------KRVLSVLIKELKKG-T--VGDL  240 (280)
T ss_pred             CCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccC----C---------hhHHHHHHHHHcCC-c--hHHH
Confidence            73211         234567788776667788888877776643    2         14788999998853 3  5667


Q ss_pred             HHHHHHHHHh
Q 040073          379 AREILKLNAR  388 (407)
Q Consensus       379 A~~lL~~l~~  388 (407)
                      |+..|..+..
T Consensus       241 a~~ALg~ig~  250 (280)
T PRK09687        241 IIEAAGELGD  250 (280)
T ss_pred             HHHHHHhcCC
Confidence            7777776644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.70  E-value=3.1e-06  Score=92.01  Aligned_cols=229  Identities=16%  Similarity=0.066  Sum_probs=124.2

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      +...++.|++.|.+++ .+|..|+..|..+..           .++++.|+.+|.+.+.  .++..|+.+|..+....  
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~--~VR~~Aa~aL~~l~~~~--  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAA--AVRRAAAEGLRELVEVL--  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhcc--
Confidence            4445667777777776 778888888877632           2357888888876655  46888877776652100  


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-----------Cch-h-----hhhchhhhHHHHHHHcc
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-----------DPF-Q-----LISVKQEFFTEIVNVLR  237 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-----------~~~-~-----~i~~~~g~i~~Lv~lL~  237 (407)
                              .  ..+.|...|++.++.+|..|+.+|..+...+           +.. +     .++. -+..+.|..++.
T Consensus       684 --------~--~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~  752 (897)
T PRK13800        684 --------P--PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAAT  752 (897)
T ss_pred             --------C--chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhc
Confidence                    0  1233444455555555555555554432100           000 0     0000 000123444454


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073          238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA  317 (407)
Q Consensus       238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~  317 (407)
                      ++   +++++..++.+|..+...        +.+.++.|..++.+. ++.++..|+.+|..+...+          ..++
T Consensus       753 D~---~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~~~  810 (897)
T PRK13800        753 DE---NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DDVA  810 (897)
T ss_pred             CC---CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hhHH
Confidence            44   555555555555554321        112356677777665 6777777777776664321          1123


Q ss_pred             HHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073          318 VVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN  386 (407)
Q Consensus       318 ~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l  386 (407)
                      .++..+.+.+...+..|+.+|..+..             ..+++.|+.+|. +.+..+|+.|+..|..+
T Consensus       811 ~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        811 AATAALRASAWQVRQGAARALAGAAA-------------DVAVPALVEALT-DPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhccc-------------cchHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence            34554545456667767777665542             123466777776 45777777777777554

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.69  E-value=9.1e-09  Score=91.83  Aligned_cols=66  Identities=21%  Similarity=0.258  Sum_probs=56.6

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN   80 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~   80 (407)
                      ++|-||.+.++-|+.++||||||.-||.+++..  +.+||+|+.+... .  .+..|..++..++.+....
T Consensus        26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~e-s--rlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPCE-S--RLRGSSGSREINESHARNR   91 (391)
T ss_pred             HHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHHh-h--hcccchhHHHHHHhhhhcc
Confidence            599999999999999999999999999999965  7899999998876 3  6777777777777775543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.8e-08  Score=96.40  Aligned_cols=69  Identities=25%  Similarity=0.479  Sum_probs=58.8

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..+++.||||.+.|++|++++|||+||+.||..+|.  +...||.|+. ...    .+.+|..+.++++.....+.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~~----~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PSR----NLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC-chh----ccCccHHHHHHHHHHHhcCC
Confidence            557899999999999999999999999999999997  4788999986 332    56689999998888876654

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.4e-08  Score=88.76  Aligned_cols=55  Identities=31%  Similarity=0.545  Sum_probs=48.0

Q ss_pred             cccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCcc
Q 040073            9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      +|-|-||++.=+|||++.|||=||=.||-+|+.-. ....||+|+..++++   .++|=
T Consensus        47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~---~vvPl  102 (230)
T KOG0823|consen   47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID---TVVPL  102 (230)
T ss_pred             ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc---eEEee
Confidence            59999999999999999999999999999999753 246789999999885   66663

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.3e-08  Score=84.86  Aligned_cols=47  Identities=26%  Similarity=0.563  Sum_probs=40.8

Q ss_pred             ccCccccccCcC--ceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073           10 FLCPISLQLMRD--PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus        10 ~~Cpi~~~~~~d--Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      |.||||++-+..  ||.+.|||.||+.||++.++.  ...||.|++.++++
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHK  180 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccchh
Confidence            899999998876  455789999999999999975  67899999988764

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.63  E-value=2.8e-08  Score=65.51  Aligned_cols=43  Identities=37%  Similarity=0.804  Sum_probs=38.2

Q ss_pred             cCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccc
Q 040073           11 LCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQV   54 (407)
Q Consensus        11 ~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~   54 (407)
                      .||||.+.+.+|+.+. |||.|++.|+.+|+.. +...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            4999999999999776 9999999999999986 47789999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.59  E-value=2.1e-05  Score=85.63  Aligned_cols=228  Identities=15%  Similarity=0.064  Sum_probs=146.9

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh--
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES--  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~--  173 (407)
                      +..++.|++.|..++ .++..|+..|..+....+          ..+.|...|.+.+.  .++..|+.+|..+...+.  
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~--~VR~~A~~aL~~~~~~~~~~  718 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDP--VVRAAALDVLRALRAGDAAL  718 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCH--HHHHHHHHHHHhhccCCHHH
Confidence            445677777777766 888888888877743211          12345555554332  345555555544321110  


Q ss_pred             ----------HHH----hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073          174 ----------YLK----SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH  239 (407)
Q Consensus       174 ----------~~~----~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~  239 (407)
                                ..+    ..+..-+  ..+.|..+|.+++.++|..++.+|..+....         .+.++.|..+++++
T Consensus       719 l~~~L~D~d~~VR~~Av~aL~~~~--~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~  787 (897)
T PRK13800        719 FAAALGDPDHRVRIEAVRALVSVD--DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDP  787 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhccc--CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCC
Confidence                      000    0000011  2345556677777777777777777764321         23478899999998


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHH
Q 040073          240 HQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVV  319 (407)
Q Consensus       240 ~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~L  319 (407)
                         ++.++..|+.+|.++....         ..++.|+..|.+. +..++..|+.+|..+..           ...++.|
T Consensus       788 ---d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L  843 (897)
T PRK13800        788 ---DPLVRAAALAALAELGCPP---------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPAL  843 (897)
T ss_pred             ---CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHH
Confidence               9999999999999884321         1235677888775 78899999999987642           2345788


Q ss_pred             HHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          320 SKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       320 v~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      +.++.+.+..++..|+.+|..+.   .+.         ...+.|...+. +.+..+|+.|...|.
T Consensus       844 ~~~L~D~~~~VR~~A~~aL~~~~---~~~---------~a~~~L~~al~-D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        844 VEALTDPHLDVRKAAVLALTRWP---GDP---------AARDALTTALT-DSDADVRAYARRALA  895 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhccC---CCH---------HHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence            88887778899999999998862   121         13556667776 668999999998875

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=3e-06  Score=79.37  Aligned_cols=183  Identities=16%  Similarity=0.146  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL  236 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL  236 (407)
                      -++.|+.-|..++.+-++...++ ..||  +..++..|++++..+|+.|+++|..++.+....+..+...|+.+.|+..|
T Consensus        99 ~ke~ald~Le~lve~iDnAndl~-~~gg--l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDIDNANDLI-SLGG--LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhHh-hccC--HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            37778777777776554444444 4564  77777799999999999999999999988776665555568899999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccC
Q 040073          237 RDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGA  314 (407)
Q Consensus       237 ~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g  314 (407)
                      ...  .+..++..|+.|++.|-.+ ......+...++...|..+|.+. .+..++.+++..+..|......-..+....+
T Consensus       176 s~~--~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  176 SSD--DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             ccC--CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            865  2678889999999999985 56888888888899999999884 2678899999999999875544444555444


Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      ....++.+.........+.++.++..+...
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            434444444444678888888887776653

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.54  E-value=5.4e-05  Score=74.25  Aligned_cols=275  Identities=9%  Similarity=0.065  Sum_probs=179.6

Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073          101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV  179 (407)
Q Consensus       101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i  179 (407)
                      ..++..|..++ ..+..|...|..+...+..+.......-....|...|.+.++. ..+.-++..|..|...++ .+..+
T Consensus       104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~~~~~v~~L~~LL~~~~-~R~~f  181 (429)
T cd00256         104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-DYVQTAARCLQMLLRVDE-YRFAF  181 (429)
T ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-chHHHHHHHHHHHhCCch-HHHHH
Confidence            44555666555 6778888888888755433211111111334566666655432 347778888888877765 45666


Q ss_pred             hccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          180 INNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       180 ~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      .+.+  .++.|+.+|+..  +.+.+=++.-++.-|+..++... .....+.|+.|+++++..  ....+.+.++.+|+||
T Consensus       182 ~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~-~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nl  256 (429)
T cd00256         182 VLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE-VLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNL  256 (429)
T ss_pred             HHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH-hhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence            5555  499999999863  56777899999999987766444 334468999999999976  3678999999999999


Q ss_pred             CCCC-------chHHHHHhcCchHHHHHHhhcc--cchhHHHHHHHH-------HHHHhcCHh-----------------
Q 040073          258 CPWG-------RNRIKAVEGGGVSVLVDLLLDV--TERRVCELMLNV-------LDLLCRCAE-----------------  304 (407)
Q Consensus       258 ~~~~-------~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~al~~-------L~~L~~~~~-----------------  304 (407)
                      ....       .....|++.| ++.+++.|...  +|+++.+..-.+       ...++..++                 
T Consensus       257 l~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~  335 (429)
T cd00256         257 ISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK  335 (429)
T ss_pred             hhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC
Confidence            9843       2345667777 56677777654  245544332222       222332222                 


Q ss_pred             -------hHHHHHhcc-CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHH
Q 040073          305 -------GRAELLKHG-AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKT  375 (407)
Q Consensus       305 -------~r~~i~~~~-g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~  375 (407)
                             |-.++-++. ..+..|+++|... ++.....|+.=+..++++.++.  +..+-+.|+=..++.+|. +.++++
T Consensus       336 se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g--r~i~~~lg~K~~vM~Lm~-h~d~~V  412 (429)
T cd00256         336 SEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG--KDVVEQLGGKQRVMRLLN-HEDPNV  412 (429)
T ss_pred             CchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH--HHHHHHcCcHHHHHHHhc-CCCHHH
Confidence                   333333322 2346677765333 3666777777788888877653  444556899889999998 569999


Q ss_pred             HHHHHHHHHHH
Q 040073          376 KERAREILKLN  386 (407)
Q Consensus       376 k~~A~~lL~~l  386 (407)
                      |..|-..++.|
T Consensus       413 r~eAL~avQkl  423 (429)
T cd00256         413 RYEALLAVQKL  423 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99998888665

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>smart00184 RING Ring finger

Probab=98.54  E-value=7.5e-08  Score=61.18  Aligned_cols=39  Identities=46%  Similarity=0.973  Sum_probs=35.6

Q ss_pred             CccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073           12 CPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVT   51 (407)
Q Consensus        12 Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~   51 (407)
                      ||||.+..++|+.++|||.|+..|+.+|+.. +...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence            8999999999999999999999999999984 46789986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=9.7e-08  Score=99.59  Aligned_cols=72  Identities=36%  Similarity=0.639  Sum_probs=67.0

Q ss_pred             CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ++|++|..||...+|+|||++| +|+|.||+.|++++..  ..+.|.||.+++.+   .+.||..||..|+.|..++.
T Consensus       866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs--~~tdPFNR~pLt~d---~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS--DCTDPFNREPLTED---MVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc--CCCCccccccCchh---hcCCCHHHHHHHHHHHHHhh
Confidence            5999999999999999999999 9999999999999976  66789999999996   89999999999999988765

>PHA02926 zinc finger-like protein; Provisional

Probab=98.46  E-value=1.1e-07  Score=82.35  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=41.7

Q ss_pred             CCCCcccCccccccCcC---------ceecCCcccccHHHHHHHHhcC----CCCCCcccccccc
Q 040073            5 EVPAHFLCPISLQLMRD---------PVTVSTGITYDRVNIERWLFTC----KNNTCPVTKQVLQ   56 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~d---------Pv~~~~g~t~~r~~i~~~~~~~----~~~~cP~~~~~~~   56 (407)
                      ....+..|+||++..-+         ++..+|||+||..||.+|....    ....||.|++.+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            35678899999998644         4677899999999999999742    2467999998763

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.3e-07  Score=85.23  Aligned_cols=51  Identities=20%  Similarity=0.459  Sum_probs=44.9

Q ss_pred             CCCCc-ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            5 EVPAH-FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~-~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+|+. +.|-||++-++||--+||||-||=+||.+|..+  ..-||.|++.+.+
T Consensus       234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~~p  285 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE--KAECPLCREKFQP  285 (293)
T ss_pred             cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc--ccCCCcccccCCC
Confidence            34444 999999999999999999999999999999976  4569999998866

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.41  E-value=2e-07  Score=61.26  Aligned_cols=41  Identities=22%  Similarity=0.464  Sum_probs=35.3

Q ss_pred             cCccccccC---cCceecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073           11 LCPISLQLM---RDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQ   53 (407)
Q Consensus        11 ~Cpi~~~~~---~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~   53 (407)
                      .||+|.+.+   +.|++++|||+||..|+.++.  +....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            389999999   467899999999999999988  34788999974

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=0.00015  Score=74.26  Aligned_cols=243  Identities=16%  Similarity=0.154  Sum_probs=145.9

Q ss_pred             CccHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHH
Q 040073           64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIE  142 (407)
Q Consensus        64 ~~n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~  142 (407)
                      ..|+.+|++.--+...-....-+        .-.--+..+.+.+.+++ ..+.-|+..|.++..  ++....     .++
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~--------~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~  117 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPE--------LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIP  117 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHH--------HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHH
Confidence            56788888887776664421100        00113446667778877 778889999999873  343333     367


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073          143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI  222 (407)
Q Consensus       143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  222 (407)
                      .+.++|.+.++  -++..|+.++..+....+   +.+.. +  .++.+..+|.+.++.++..|+.++..+ ...+ ....
T Consensus       118 ~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p---~~~~~-~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~  187 (526)
T PF01602_consen  118 DVIKLLSDPSP--YVRKKAALALLKIYRKDP---DLVED-E--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYK  187 (526)
T ss_dssp             HHHHHHHSSSH--HHHHHHHHHHHHHHHHCH---CCHHG-G--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHT
T ss_pred             HHHHHhcCCch--HHHHHHHHHHHHHhccCH---HHHHH-H--HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhh
Confidence            88888887765  568888888877664332   22221 1  478888999888999999999999998 1111 1100


Q ss_pred             hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073          223 SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       223 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~  302 (407)
                      ..-...+..|.+++...   ++-.+...++.|..++........-  ...++.+..+|.+. +..+.-.++.++..+...
T Consensus       188 ~~~~~~~~~L~~~l~~~---~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~  261 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDP---DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS  261 (526)
T ss_dssp             THHHHHHHHHHHHHTCC---SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS
T ss_pred             hhHHHHHHHhhhccccc---chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc
Confidence            11123455555555555   7777777777777776643322200  33455666666554 556666666666666654


Q ss_pred             HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                      ..    ...  .+++.|++++.+.++..+-.++..|..++.
T Consensus       262 ~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  262 PE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             HH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred             hH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence            44    211  245566665554445566666666666664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=0.00012  Score=75.15  Aligned_cols=255  Identities=15%  Similarity=0.188  Sum_probs=174.2

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      ++.+.+.+.+++ .+|.+|+.++..+.+.+++.   +... .++.+.++|.+.+.  .++..|+.++..+...+.....+
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~--~V~~~a~~~l~~i~~~~~~~~~~  189 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDP--SVVSAALSLLSEIKCNDDSYKSL  189 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSH--HHHHHHHHHHHHHHCTHHHHTTH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcc--hhHHHHHHHHHHHccCcchhhhh
Confidence            334445556666 88999999999998876652   2223 68999999976665  46889999998881112111222


Q ss_pred             hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      +..    .+..|.+++...++-.+.....+|..++........-   ...++.+..++++.   ++.+.-.++.++..+.
T Consensus       190 ~~~----~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~---~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  190 IPK----LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS---SPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHH----HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHS
T ss_pred             HHH----HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc---ccHHHHHHHHHHHHhh
Confidence            221    5666666777788888899999988876543322211   35788899999887   8899999999999887


Q ss_pred             CCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-cCCchhhHHHHHH
Q 040073          259 PWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-RVSHAASDRAVRI  337 (407)
Q Consensus       259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-~~s~~~~e~a~~~  337 (407)
                      ....     .-..+++.|+.+|.+. +.+++-.++..|..++...  ...+ .+   ....+..+. +.+...+..++.+
T Consensus       260 ~~~~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~--~~~v-~~---~~~~~~~l~~~~d~~Ir~~~l~l  327 (526)
T PF01602_consen  260 PSPE-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN--PPAV-FN---QSLILFFLLYDDDPSIRKKALDL  327 (526)
T ss_dssp             SSHH-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC--HHHH-GT---HHHHHHHHHCSSSHHHHHHHHHH
T ss_pred             cchH-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc--chhh-hh---hhhhhheecCCCChhHHHHHHHH
Confidence            6444     3335789999999875 7889999999999998854  2222 22   122333445 4457789999999


Q ss_pred             HHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          338 LCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       338 L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      |..++..    +....     .++.|...++..+++..++.+...+..+...+.
T Consensus       328 L~~l~~~----~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~  372 (526)
T PF01602_consen  328 LYKLANE----SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP  372 (526)
T ss_dssp             HHHH--H----HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred             Hhhcccc----cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence            9999952    22333     677888888544577788888888877776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.33  E-value=7.3e-07  Score=82.42  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=39.8

Q ss_pred             CcccCccccc-cCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            8 AHFLCPISLQ-LMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         8 ~~~~Cpi~~~-~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      ++..||+|.. .+..|=    +.+|||+||++||.+.|.. +...||.|+.++...
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence            4578999996 355552    3379999999999998865 478999999987664

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05536 Neurochondrin: Neurochondrin

Probab=98.31  E-value=9.7e-05  Score=75.46  Aligned_cols=238  Identities=15%  Similarity=0.106  Sum_probs=156.3

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH---HhHhhccchhhHHHHHHHHhcC-------ChhHHHHHHHHHH
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYL---KSIVINNGEEFLESLMRVLKCG-------NYQSRSYAIMLLK  210 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~i~~~gg~~i~~Lv~lL~~~-------~~~~~~~a~~~L~  210 (407)
                      ++.-+++|+..++.  .+-.++..+..+..+++..   ++.+-++=|  .+.|-++|.++       ....+.-|..+|.
T Consensus         7 l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig--~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    7 LEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIG--FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcC--hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            45556778777652  3778888888877765422   223444432  78888999873       3556778888899


Q ss_pred             HhhccCCchhhhhchhhhHHHHHHHcccCCCCCH-HHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHH
Q 040073          211 SIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQ-QASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVC  289 (407)
Q Consensus       211 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~  289 (407)
                      .++..++....- .-.+-||.|++.+.+.   +. ++...+..+|..++.+++++..+++.|+|+.|.+.+.++  +...
T Consensus        83 ~f~~~~~~a~~~-~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~  156 (543)
T PF05536_consen   83 AFCRDPELASSP-QMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQM  156 (543)
T ss_pred             HHcCChhhhcCH-HHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchH
Confidence            988765543221 1135699999999887   55 999999999999999999999999999999999999884  5678


Q ss_pred             HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc----CCchhhHHHHHHHHHHhccCC---chHHHHHHHHhChHHH
Q 040073          290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR----VSHAASDRAVRILCSVCKFSA---TARVLQEMLQVGVVSK  362 (407)
Q Consensus       290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~----~s~~~~e~a~~~L~~l~~~~~---~~~~~~~~~~~g~i~~  362 (407)
                      +.|+.+|.++..... ....-++...+..++..|.+    .....+-..+..|..+-...+   .......---.....-
T Consensus       157 E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g  235 (543)
T PF05536_consen  157 EIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG  235 (543)
T ss_pred             HHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence            999999999877433 21222222333344333322    234455666777777766542   0000111111223344


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          363 LCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       363 Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      |..+|++.-+++.|..|-.+...+-+.
T Consensus       236 l~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  236 LRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            556677777888888877766666554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00033  Score=74.48  Aligned_cols=256  Identities=18%  Similarity=0.137  Sum_probs=166.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcC--cHHHHHHHhhccCC--------------CCchHHHHHHHHHhcCCChhHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAG--AIEFLATIITKSDA--------------GSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G--~i~~Lv~lL~~~~~--------------~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      ..|..|++.|..+++.-+...+.....|  .++.+..++....+              ...--..|..+|-.++.+=.. 
T Consensus       264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-  342 (1075)
T KOG2171|consen  264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-  342 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-
Confidence            7788999999999877554444444433  46666666643211              011234556666666654321 


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                       +.+.- .  .++.+-.+|.+.++.-|..+..+|..++.... ......-..+++..+..|++.   ++.++.+|+.|+.
T Consensus       343 -~~v~p-~--~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~Dp---hprVr~AA~naig  414 (1075)
T KOG2171|consen  343 -KQVLP-P--LFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDP---HPRVRYAALNAIG  414 (1075)
T ss_pred             -hhehH-H--HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Confidence             22222 2  67788888899999999999999999875543 223333345677777888888   9999999999999


Q ss_pred             HhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHH----HHHc-CCch
Q 040073          256 ELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSK----KILR-VSHA  329 (407)
Q Consensus       256 ~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~----~l~~-~s~~  329 (407)
                      .++.+ .+...+--.+-.+|.|+..+.+..++.+...|+.+|.+....-. +..+..   .++.+++    .+.. +++.
T Consensus       415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~p---YLd~lm~~~l~~L~~~~~~~  490 (1075)
T KOG2171|consen  415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEP---YLDGLMEKKLLLLLQSSKPY  490 (1075)
T ss_pred             hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHH---HHHHHHHHHHHHHhcCCchh
Confidence            99985 33444445556778899999876567899999999998887433 323322   3444444    3333 4588


Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                      .+|.++.++..++....+. ....-  .-.+|.|..+|+....+..|.-..+.+
T Consensus       491 v~e~vvtaIasvA~AA~~~-F~pY~--d~~Mp~L~~~L~n~~~~d~r~Lrgktm  541 (1075)
T KOG2171|consen  491 VQEQAVTAIASVADAAQEK-FIPYF--DRLMPLLKNFLQNADDKDLRELRGKTM  541 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhhh-hHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHH
Confidence            9999999999999644332 22221  246777888888554344444444433

>PF05536 Neurochondrin: Neurochondrin

Probab=98.27  E-value=5.9e-05  Score=77.01  Aligned_cols=201  Identities=16%  Similarity=0.192  Sum_probs=140.7

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc----hhhhhchhhhHHHHHHHcccCCC----CCHHHHHHHHHHHHHh
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP----FQLISVKQEFFTEIVNVLRDHHQ----FSQQASKAALKLLVEL  257 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~~~~A~~aL~~L  257 (407)
                      .++..+.+|++.+.+-|=.+...+..+....+.    ++.+...-| .+.|-++|+.+..    .....+.-|+..|..+
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            477778888888866666777777787765542    234556556 6888899987411    1356788889999999


Q ss_pred             CCCCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          258 CPWGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       258 ~~~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      |..++.  ...+++  -||.|++.+...++.++.+.|+.+|..++.+++|+..+++ .|+|+.|...+.+ .+...+.|+
T Consensus        85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHH
Confidence            996653  355555  5999999998873448999999999999999999999998 5899999997765 678899999


Q ss_pred             HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      .+|.+++.....+ ...  -....+..++.-|...-+....+.+..++..|....+..|
T Consensus       161 ~lL~~Lls~~~~~-~~~--~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~  216 (543)
T PF05536_consen  161 NLLLNLLSRLGQK-SWA--EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP  216 (543)
T ss_pred             HHHHHHHHhcchh-hhh--hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence            9999998764421 111  1122333333334333233344555666777777655554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.21  E-value=3.1e-05  Score=62.54  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=119.2

Q ss_pred             hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073          227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR  306 (407)
Q Consensus       227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r  306 (407)
                      |.+..||.=..+.  .+.++++....-|.|.+-++.|-..+.+..+++..+..|... +..+++.+.+.|.|+|-...+.
T Consensus        16 ~Ylq~LV~efq~t--t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTT--TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHH
Confidence            5677888777665  488999999999999999999999999999999999999886 8899999999999999999888


Q ss_pred             HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                      .-|++ ++|+|..+..+.+.....-..|+..|..++...+.  .+.++..--.+.-+.++-.+ .+..-+--|...|+.
T Consensus        93 ~~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt--~r~ell~p~Vv~~v~r~~~s-~s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   93 KFIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT--ERDELLSPAVVRTVQRWRES-KSHDERNLASAFLDK  167 (173)
T ss_pred             HHHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc--hhHHhccHHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence            88777 78999998877665677788899999999975443  57776665555555444332 244445555555543

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.9e-06  Score=85.09  Aligned_cols=72  Identities=33%  Similarity=0.584  Sum_probs=64.9

Q ss_pred             CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +||++|..|+...+|+|||+++ +|.|.||+.|..++-.  ..+.|.-+-|++-+   +.+||-.||+.|-.+....+
T Consensus       850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls--d~tDPFNRmPLtld---dVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS--DGTDPFNRMPLTLD---DVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc--CCCCccccCCCchh---hcCCCHHHHHHHHHHHhccc
Confidence            5999999999999999999997 7899999999999976  56789999999886   88999999999999876554

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.19  E-value=1.4e-06  Score=63.98  Aligned_cols=44  Identities=32%  Similarity=0.619  Sum_probs=34.5

Q ss_pred             CCCcccCccccccCcCc-------------eecCCcccccHHHHHHHHhcCCCCCCcccc
Q 040073            6 VPAHFLCPISLQLMRDP-------------VTVSTGITYDRVNIERWLFTCKNNTCPVTK   52 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~   52 (407)
                      ++++- |+||++.|.||             +...|||.|-..||++|++.  +.+||.|+
T Consensus        17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR   73 (73)
T PF12678_consen   17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR   73 (73)
T ss_dssp             SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred             CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence            44444 99999999544             34579999999999999975  66999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.16  E-value=0.00072  Score=65.76  Aligned_cols=264  Identities=15%  Similarity=0.151  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      +.+..+.+.+|.+..+ .+.-..+.+.+.--.++..|..+.....++++|+..+..+..-..+.+. +- .+  .+..++
T Consensus        40 ~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~-~~--vvralv  114 (371)
T PF14664_consen   40 EVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IP-RG--VVRALV  114 (371)
T ss_pred             HHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CC-HH--HHHHHH
Confidence            8888899999999886 6778888888877778888887765555699999988776543222222 22 22  899999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073          192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG  271 (407)
Q Consensus       192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G  271 (407)
                      .+..+.+...+..+..+|..++-.+..   ++...|++..|++.+.++   ..+..+..+.++..+...+..|+-+...-
T Consensus       115 aiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~---~~~~~~~l~~~lL~lLd~p~tR~yl~~~~  188 (371)
T PF14664_consen  115 AIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG---SFSISESLLDTLLYLLDSPRTRKYLRPGF  188 (371)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc---cHhHHHHHHHHHHHHhCCcchhhhhcCCc
Confidence            999999999999999999999866543   444467799999998887   66788899999999998888887665433


Q ss_pred             chHHHHHHhhcc------cch--hHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073          272 GVSVLVDLLLDV------TER--RVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRVSHAASDRAVRILCSVC  342 (407)
Q Consensus       272 ~v~~Lv~lL~~~------~~~--~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~  342 (407)
                      -+..++.-+.+.      ++.  +....+..++..+-.+=.|--.+..+. .|+..||..|...+++.++.-+.++..+-
T Consensus       189 dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  189 DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            466666665443      122  223344444444433323332222222 45666666555444555555555554443


Q ss_pred             ccCC--------------------------------------------c------hHHHHHHHHhChHHHHHHHHhcCCC
Q 040073          343 KFSA--------------------------------------------T------ARVLQEMLQVGVVSKLCLVLQVDAS  372 (407)
Q Consensus       343 ~~~~--------------------------------------------~------~~~~~~~~~~g~i~~Ll~ll~~~~~  372 (407)
                      .-..                                            +      .-.....+++|.++.|+.+.....+
T Consensus       269 rik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d  348 (371)
T PF14664_consen  269 RIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSED  348 (371)
T ss_pred             CCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCC
Confidence            2110                                            0      0112335678999999999997768


Q ss_pred             HHHHHHHHHHHHHH
Q 040073          373 VKTKERAREILKLN  386 (407)
Q Consensus       373 ~~~k~~A~~lL~~l  386 (407)
                      +....||.-+|.-+
T Consensus       349 ~~l~~KAtlLL~el  362 (371)
T PF14664_consen  349 SSLSRKATLLLGEL  362 (371)
T ss_pred             chHHHHHHHHHHHH
Confidence            89999999888643

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.15  E-value=3.4e-05  Score=62.26  Aligned_cols=131  Identities=17%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073          186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~  264 (407)
                      .+..||.-.+. .+.+.++....-|.|.+.+ +.+.....+..++...|.-|...   +...++-+...|+|+|..+.|+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~---ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ---NELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc---cHHHHHHhHHHHHhhccChHHH
Confidence            56677776665 6899999999999999755 45555555568899999999988   9999999999999999999999


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcC
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRV  326 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~  326 (407)
                      +.|++++++|.++..+.+. .....-.++.+|..|+-.+. .|..+..     |..|+.+.+.
T Consensus        93 ~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~r~  149 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQRW  149 (173)
T ss_pred             HHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHHHH
Confidence            9999999999999999886 67778889999999987543 3444433     5667766654

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.7e-07  Score=83.63  Aligned_cols=68  Identities=24%  Similarity=0.340  Sum_probs=54.8

Q ss_pred             CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073            6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW   76 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~   76 (407)
                      +--+|.||||+++++--.+.. |+|.||+.||-.-+.. +++.||.|++.+...-  .|.+...+-.+|.+.
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~Skr--sLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSKR--SLRIDPNFDALISKI  108 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccccc--cCCCCccHHHHHHHH
Confidence            445789999999999999885 9999999999999987 5899999999875531  666665565565544

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.14  E-value=1.2e-06  Score=80.46  Aligned_cols=68  Identities=21%  Similarity=0.386  Sum_probs=50.4

Q ss_pred             CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccccccc-CCCCCCccHHHHHHHHH
Q 040073            6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQET-DLTSTTPNHTLRRLIQA   75 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~-~~~~l~~n~~l~~~I~~   75 (407)
                      +=...+|++|..+|.|+-|+. |=|||||+||-+++..  ..+||.|+..+... +.-.+.+.++|+.++..
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHH
Confidence            334579999999999999885 9999999999999986  88999998776441 00023344566655533

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.13  E-value=0.00057  Score=66.48  Aligned_cols=251  Identities=16%  Similarity=0.138  Sum_probs=170.9

Q ss_pred             HHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-
Q 040073          118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-  196 (407)
Q Consensus       118 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-  196 (407)
                      +..|..+-+..+..|..+.-.-..+.+..++-+++.  .++-.+..++..+..+.+..+.+. +.+  .--.++.-|.. 
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~--~vraa~yRilRy~i~d~~~l~~~~-~l~--id~~ii~SL~~~   78 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSK--EVRAAGYRILRYLISDEESLQILL-KLH--IDIFIIRSLDRD   78 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHcCHHHHHHHH-HcC--CchhhHhhhccc
Confidence            345556666677777776666666666655544443  568899999998887776544444 444  34455666765 


Q ss_pred             -CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH
Q 040073          197 -GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV  275 (407)
Q Consensus       197 -~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~  275 (407)
                       .+..-|++|.+.++.+.........+  ..|++..+|.+..+.   ++..+..++.+|..|+..+  -..+++.|++..
T Consensus        79 ~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~---~D~lr~~cletL~El~l~~--P~lv~~~gG~~~  151 (371)
T PF14664_consen   79 NKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE---DDRLRRICLETLCELALLN--PELVAECGGIRV  151 (371)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHH
Confidence             35667899999999998775544444  348899999999887   8999999999999999844  346678999999


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-------Cc--hhhHHHHHHHHHHhccCC
Q 040073          276 LVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-------SH--AASDRAVRILCSVCKFSA  346 (407)
Q Consensus       276 Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-------s~--~~~e~a~~~L~~l~~~~~  346 (407)
                      |++.+.++ ..++.+..+.++-.+-.++..|.-+... --+..++.-+.+.       +.  ..-+.+..++..+-+...
T Consensus       152 L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~  229 (371)
T PF14664_consen  152 LLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP  229 (371)
T ss_pred             HHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC
Confidence            99999886 4558899999999999999988866552 3455555544433       11  122334444444443222


Q ss_pred             chHHHHHH-HHhChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          347 TARVLQEM-LQVGVVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       347 ~~~~~~~~-~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                      .  ...-. -+..++..|+..|+.+ +++.|+..-.++--
T Consensus       230 G--Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~d  266 (371)
T PF14664_consen  230 G--LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFD  266 (371)
T ss_pred             c--eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            1  11111 1236899999999964 77788776665533

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.5e-06  Score=77.41  Aligned_cols=49  Identities=18%  Similarity=0.335  Sum_probs=43.1

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHH-HHhcCCCCCCccccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIER-WLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~-~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+|.|+||.+.+.+|+-++|||.||=+||-. |-.+ ...+||.|++....
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~-k~~~CplCRak~~p  263 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK-KYEFCPLCRAKVYP  263 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhh-ccccCchhhhhccc
Confidence            4799999999999999999999999999999 7765 36789999986543

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.09  E-value=4e-06  Score=75.49  Aligned_cols=65  Identities=22%  Similarity=0.363  Sum_probs=54.2

Q ss_pred             ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcccccc--ccccCCCCCCccHHHHHHHHHHHHh
Q 040073           10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQV--LQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~--~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      +.||+|+.+++.|+-+ +|||+||..||+..+... .+.||.|...  +- +   .+.|....+..|+.+...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~rkdvll-d---~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSRKDVLL-D---GLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCcccccchh-h---ccCccHHHHHHHHHHHHH
Confidence            8999999999999977 799999999999988764 8999999652  32 2   678888888888887663

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0061  Score=58.79  Aligned_cols=244  Identities=15%  Similarity=0.182  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh------hH---HHhHhhccchh
Q 040073          115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE------SY---LKSIVINNGEE  185 (407)
Q Consensus       115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~------~~---~~~~i~~~gg~  185 (407)
                      ...++.++.+|.- |+.--.+++.++++.|+.+|.+...  ++-...+..|..|+-.+      +.   ....+.+++  
T Consensus       102 hd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNt--DI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~--  176 (536)
T KOG2734|consen  102 HDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENT--DIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQ--  176 (536)
T ss_pred             HHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCc--hhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhcc--
Confidence            4577788888876 7877789999999999999999877  44667777777776322      21   223344433  


Q ss_pred             hHHHHHHHHhcCC------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          186 FLESLMRVLKCGN------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       186 ~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      +++.|++-+..-+      .....++...+.|+....+.-...+..+|.+.-|...+..... -..-..-|...|.-+..
T Consensus       177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq  255 (536)
T KOG2734|consen  177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQ  255 (536)
T ss_pred             HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhc
Confidence            8999988776533      3334567777888877765544444445877777765543311 22344556666666666


Q ss_pred             C-CchHHHHHhcCchHHHHHHhhc---c-----cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchh
Q 040073          260 W-GRNRIKAVEGGGVSVLVDLLLD---V-----TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAA  330 (407)
Q Consensus       260 ~-~~n~~~~v~~G~v~~Lv~lL~~---~-----~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~  330 (407)
                      + ++|+...-...+|..+++-+.-   .     ...+.-++-...|..+-..+++|..+.. +.|+.. +.+|++.....
T Consensus       256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqL-m~Lmlr~Kk~s  333 (536)
T KOG2734|consen  256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQL-MNLMLREKKVS  333 (536)
T ss_pred             cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHH-HHHHHHHHHHh
Confidence            4 4588888888999999987753   1     1345667788888888889999999998 456664 44566667778


Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073          331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV  366 (407)
Q Consensus       331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l  366 (407)
                      +..++++|-....+......+..-++.+|+.....+
T Consensus       334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence            889999999998877655567777777777766544

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3.4e-06  Score=81.42  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCC--CCCCccHHHHHHHHHHHHh
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL--TSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~--~~l~~n~~l~~~I~~~~~~   79 (407)
                      +..++.+|-|-||...+.+||+++|||+||+.||.+....  ...||.|+.++.+-.+  ....+|+.++.+|..|+..
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ--ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc--CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            3457899999999999999999999999999999997753  7789999988764110  0222366666777777654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3.5e-06  Score=81.83  Aligned_cols=72  Identities=17%  Similarity=0.288  Sum_probs=54.7

Q ss_pred             CCcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccccCCCCCCcc----HHHHHHHHHHHHh
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQETDLTSTTPN----HTLRRLIQAWCTI   79 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~~~~~~l~~n----~~l~~~I~~~~~~   79 (407)
                      +.+..||||++...=|+.+.|||.||=.||.++|...   +...||.|+..+..+   ++.|-    ..-+..++.++..
T Consensus       184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k---dl~pv~~e~~qkke~l~~~~~~  260 (513)
T KOG2164|consen  184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK---DLLPVFIEDDQKKEELKLHQDP  260 (513)
T ss_pred             CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc---ceeeeeeccccccHHHHHHhcc
Confidence            3478999999999999999999999999999999753   457899999887653   33332    2224556666666


Q ss_pred             cc
Q 040073           80 NA   81 (407)
Q Consensus        80 ~~   81 (407)
                      |+
T Consensus       261 ng  262 (513)
T KOG2164|consen  261 NG  262 (513)
T ss_pred             cC
Confidence            66

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.99  E-value=1.4e-05  Score=75.79  Aligned_cols=51  Identities=22%  Similarity=0.446  Sum_probs=45.4

Q ss_pred             ccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc
Q 040073           10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP   65 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~   65 (407)
                      +.|.|++++-++||+.+ +||.|||+-|+++..+  +.+||+++++++.+   ++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs~e---elV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLSIE---ELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH--cCCCCCCCCcCCHH---Heee
Confidence            57999999999999887 9999999999999976  78899999999875   5554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.99  E-value=8.1e-06  Score=52.68  Aligned_cols=40  Identities=33%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      ++++..+++.|+||.|+++|.+. +.++++.|+++|.+|+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            56899999999999999999986 89999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.98  E-value=0.00037  Score=69.94  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCch
Q 040073          195 KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGV  273 (407)
Q Consensus       195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v  273 (407)
                      -..+.+.+..|+.++.+++..-..-+.-.....++.+||.++.++   +..+...++++|.||.. ..+-|..+++.|+|
T Consensus       387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp---~~~i~~~~lgai~NlVmefs~~kskfl~~ngI  463 (678)
T KOG1293|consen  387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP---EIMIMGITLGAICNLVMEFSNLKSKFLRNNGI  463 (678)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc---chhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence            345777777777777777643221111133345789999999887   88999999999999998 56789999999999


Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH--HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC
Q 040073          274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA--ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA  346 (407)
Q Consensus       274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~--~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~  346 (407)
                      ..|.+++.+. +..++..++++|.++.-+.+...  +... .-+-..++.++.+.....+|.+..+|.|+.+++.
T Consensus       464 d~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  464 DILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            9999999986 88999999999999987655433  3333 2234456665666678899999999999998754

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00049  Score=70.33  Aligned_cols=216  Identities=18%  Similarity=0.157  Sum_probs=158.9

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCC-
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVAD-  217 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-  217 (407)
                      |+.|+.-+.+..-..+ +..|+..|-.++.   ..+..++..|   +++|+..|+.+  +++....+..++.++...++ 
T Consensus        24 I~kLcDRvessTL~eD-RR~A~rgLKa~sr---kYR~~Vga~G---mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   24 IEKLCDRVESSTLLED-RRDAVRGLKAFSR---KYREEVGAQG---MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HHHHHHHHhhccchhh-HHHHHHHHHHHHH---HHHHHHHHcc---cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            4444444444332223 8888888887764   3466666554   99999999874  89999999999999987764 


Q ss_pred             ------ch----------hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHh-cCchHHHHH
Q 040073          218 ------PF----------QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NRIKAVE-GGGVSVLVD  278 (407)
Q Consensus       218 ------~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~-~G~v~~Lv~  278 (407)
                            ..          ..+....+.|..|+..+...   +--++..|...|.+|.+..+  -+..+.. --+|..|+.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~---DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF---DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh---chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence                  12          12234467888899999887   88999999999999887544  5555554 457999999


Q ss_pred             HhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC----chhhHHHHHHHHHHhccCCchHHHHHH
Q 040073          279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS----HAASDRAVRILCSVCKFSATARVLQEM  354 (407)
Q Consensus       279 lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s----~~~~e~a~~~L~~l~~~~~~~~~~~~~  354 (407)
                      +|.+. ...++..++-.|..|......-++++.-..+...|..++....    .-+-+-|+..|.+|-+.+..  -..--
T Consensus       174 lL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~F  250 (970)
T KOG0946|consen  174 LLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFF  250 (970)
T ss_pred             HHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHH
Confidence            99986 5678889999999999987777777776778888988775531    35688899999999986543  13333


Q ss_pred             HHhChHHHHHHHHhc
Q 040073          355 LQVGVVSKLCLVLQV  369 (407)
Q Consensus       355 ~~~g~i~~Ll~ll~~  369 (407)
                      .+.+-||+|..+|..
T Consensus       251 rE~~~i~rL~klL~~  265 (970)
T KOG0946|consen  251 REGSYIPRLLKLLSV  265 (970)
T ss_pred             hccccHHHHHhhcCc
Confidence            447889999977754

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.0042  Score=59.90  Aligned_cols=243  Identities=16%  Similarity=0.208  Sum_probs=167.7

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC---------hhHHHHHHhcCcHHHHHHHhhccCCCC----chHHHHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS---------ERNRSCLEAAGAIEFLATIITKSDAGS----DECDEAL  162 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~---------~~~r~~i~~~G~i~~Lv~lL~~~~~~~----~~~~~a~  162 (407)
                      -..|+.++..|...+ +.....+.-|+.+...+         ...-+.+++.++++.|++-+..-+.+.    ....+++
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            456778888887766 77777777777776442         135678888999999999998766532    1255667


Q ss_pred             HHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHccc-
Q 040073          163 SILYHLNVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRD-  238 (407)
Q Consensus       163 ~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~-  238 (407)
                      .++-|+..-.......+.+.|  .+..|...+..  .-...+..|..+|.-+..... ++...+.-.| |..|++-+.. 
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~--ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G-iD~lL~~la~y  280 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQG--LLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG-IDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhh--HHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc-HHHHHhhcchh
Confidence            777777665555555566554  56665554432  244567899999998877665 5555555444 7777776541 


Q ss_pred             --CCCC---CHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh---hHHHHH
Q 040073          239 --HHQF---SQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE---GRAELL  310 (407)
Q Consensus       239 --~~~~---~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~---~r~~i~  310 (407)
                        .+|.   ..+..++-..+|+.+...+.|+..++...++....-+++..  ...+..++.+|.....+++   +...++
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt~~C~kfV  358 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGTPNCNKFV  358 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCchHHHHHHH
Confidence              1111   24688888899999999999999999987787666666653  4567789999998877654   567778


Q ss_pred             hccCchHHHHHHHHc---------CC-chhhHHHHHHHHHHhccC
Q 040073          311 KHGAGLAVVSKKILR---------VS-HAASDRAVRILCSVCKFS  345 (407)
Q Consensus       311 ~~~g~i~~Lv~~l~~---------~s-~~~~e~a~~~L~~l~~~~  345 (407)
                      + .+|...+.-..++         .+ ....|+..++||++-...
T Consensus       359 e-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  359 E-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             H-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            7 5677777665552         22 456788888998887643

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.93  E-value=6.2e-06  Score=80.69  Aligned_cols=70  Identities=27%  Similarity=0.497  Sum_probs=55.3

Q ss_pred             CCCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc-cHHHHHHHHHHHHh
Q 040073            5 EVPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP-NHTLRRLIQAWCTI   79 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~-n~~l~~~I~~~~~~   79 (407)
                      .+.+++.||+|..++.||+.. .|||.||+.||.+|...  +..||.|.+.....   ...+ -..+++.+..|-..
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~---~~~~~~~~~~~~~~~l~i~   88 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQA---EELPVPRALRRELLKLPIR   88 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchh---hccCchHHHHHHHHhcccc
Confidence            367779999999999999984 99999999999999976  78999998876542   4444 24556777666443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=4.5e-06  Score=85.00  Aligned_cols=48  Identities=15%  Similarity=0.324  Sum_probs=44.4

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      ++||+|..=++|-|++-|||.||..||+..+.. +...||.|+..|..+
T Consensus       644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGAN  691 (698)
T ss_pred             eeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCcc
Confidence            699999999999999999999999999999876 488999999998775

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.86  E-value=1.6e-05  Score=51.31  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC
Q 040073          128 SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN  169 (407)
Q Consensus       128 ~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  169 (407)
                      +++++..+++.|++|.|+++|.+.+.  .++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDP--EVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSH--HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCH--HHHHHHHHHHHHHh
Confidence            47899999999999999999996665  57999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.85  E-value=0.00053  Score=68.85  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      .....|+.++.+++..-..-|..+....++.+|+++|..++.  -++..++++|.|+.+.=.+.+..+...|  +|+.+.
T Consensus       392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl~~n--gId~l~  467 (678)
T KOG1293|consen  392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFLRNN--GIDILE  467 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHHHcC--cHHHHH
Confidence            555667778888776655566666678899999999966655  3588899999998875555565555566  499999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHh
Q 040073          192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVE  269 (407)
Q Consensus       192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~  269 (407)
                      ..+.+.+..+|.++.|+|+++...+++.....-... ....++.+.+++   ++.+++.++..|+||..+. +...-+++
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqeq~fqllRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQEQCFQLLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            999999999999999999999887776554433223 234566777777   9999999999999998753 33333444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.001  Score=70.92  Aligned_cols=232  Identities=11%  Similarity=0.112  Sum_probs=143.8

Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh-HHHhH
Q 040073          101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES-YLKSI  178 (407)
Q Consensus       101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~  178 (407)
                      +.+=+.|.+++ ..|+.|+..|..++..+.+.-.... .-+++.++..|.+++.  .|+..|+.++..++.+=. ...+.
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp--rVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP--RVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH--HHHHHHHHHHHhhhhhhcHHHHHH
Confidence            33444556776 8899999999999887654322211 3456777788877766  579999999999886432 22232


Q ss_pred             hhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH-cccCCCCCHHHHHHHHHHHHH
Q 040073          179 VINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV-LRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~  256 (407)
                      -.+   ..++.|+..+.+ ++..++.+|+.++.+++.........---.+.+..++.+ ++++   ++.+++.++.+|..
T Consensus       428 ~~e---~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~---~~~v~e~vvtaIas  501 (1075)
T KOG2171|consen  428 HHE---RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS---KPYVQEQAVTAIAS  501 (1075)
T ss_pred             HHH---hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence            222   256788888877 588999999999999987665544332223455533333 4455   89999999999998


Q ss_pred             hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc--CHhhHHHHHhccCchHHHHHHHHcC-------C
Q 040073          257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR--CAEGRAELLKHGAGLAVVSKKILRV-------S  327 (407)
Q Consensus       257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~--~~~~r~~i~~~~g~i~~Lv~~l~~~-------s  327 (407)
                      .+..-.....--=.-.+|.|...|....+.+.++....++..++.  ..-||.++...+   ..+++++...       +
T Consensus       502 vA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~~~~~~~d  578 (1075)
T KOG2171|consen  502 VADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQGSDQDDD  578 (1075)
T ss_pred             HHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhcccchhhc
Confidence            876333222111123577777888765334444444444443332  134566666543   2344433332       3


Q ss_pred             chhhHHHHHHHHHHhcc
Q 040073          328 HAASDRAVRILCSVCKF  344 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~  344 (407)
                      ...+++-......+|+-
T Consensus       579 d~~~sy~~~~warmc~i  595 (1075)
T KOG2171|consen  579 DPLRSYMIAFWARMCRI  595 (1075)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            45567777777777764

>PTZ00429 beta-adaptin; Provisional

Probab=97.80  E-value=0.015  Score=61.61  Aligned_cols=249  Identities=8%  Similarity=0.009  Sum_probs=154.0

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      .+++..+-+.|.+.+ ..+..+++.+-.....+.+.-      -+.+-+++++.+.+-  ..+.-..-.|.+.+..+++ 
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~--elKKLvYLYL~~ya~~~pe-  101 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDL--ELKKLVYLYVLSTARLQPE-  101 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCH--HHHHHHHHHHHHHcccChH-
Confidence            456677777887766 667788886655543322211      134556676665543  2344444455555544332 


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                       ..+.     ++..|.+=+.+.++.+|..|.+++.++-. .+    +..  -.++++.+.+.+.   ++-+++.|+-++.
T Consensus       102 -lalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~----i~e--~l~~~lkk~L~D~---~pYVRKtAalai~  165 (746)
T PTZ00429        102 -KALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SS----VLE--YTLEPLRRAVADP---DPYVRKTAAMGLG  165 (746)
T ss_pred             -HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HH----HHH--HHHHHHHHHhcCC---CHHHHHHHHHHHH
Confidence             1222     47788888888999999999998888732 11    222  2567778888887   9999999999999


Q ss_pred             HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      .+-..++.  .+.+.|.++.|.++|.+. ++.++..|+.+|..+......+-.+..  ..+..++..+.+.++..+-..+
T Consensus       166 Kly~~~pe--lv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~l~~--~~~~~Ll~~L~e~~EW~Qi~IL  240 (746)
T PTZ00429        166 KLFHDDMQ--LFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIESSN--EWVNRLVYHLPECNEWGQLYIL  240 (746)
T ss_pred             HHHhhCcc--cccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhHHHH--HHHHHHHHHhhcCChHHHHHHH
Confidence            98764442  345678899999998876 899999999999999764332222221  2345556555555666666666


Q ss_pred             HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                      .+|....   ++.  -.++  ...+..+...|++. ++.+.-.|.+++
T Consensus       241 ~lL~~y~---P~~--~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~i  280 (746)
T PTZ00429        241 ELLAAQR---PSD--KESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVV  280 (746)
T ss_pred             HHHHhcC---CCC--cHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            6654322   211  0111  23455555656643 444454444443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.79  E-value=0.0013  Score=63.72  Aligned_cols=248  Identities=12%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHH
Q 040073          131 NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLL  209 (407)
Q Consensus       131 ~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L  209 (407)
                      ..+.|...|++..|++++..+.-...++.++..+|-.+...  +|++.+..-|   +..+..+-+ +..++.....+.+|
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~---~~~Il~lAK~~e~~e~aR~~~~il  246 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG---LGVILNLAKEREPVELARSVAGIL  246 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc---chhhhhhhhhcCcHHHHHHHHHHH
Confidence            45677888999999999998776434688888888875543  2455555433   333333333 35788888999999


Q ss_pred             HHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhcccchh
Q 040073          210 KSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTERR  287 (407)
Q Consensus       210 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~~  287 (407)
                      .++-.+.+....-....|++...+--.+..   ++...+.++.+|.|++.+  ...++.|++..+-+-|.-+-.+. +.-
T Consensus       247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del  322 (832)
T KOG3678|consen  247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DEL  322 (832)
T ss_pred             HHHhhhhHHHHHHHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHH
Confidence            999887765444444467788877777776   899999999999999884  45888899987777777666665 666


Q ss_pred             HHHHHHHHHHHHhcCHhhHHHHHhccCc---hHHHHHHHHcC--------------------------CchhhHHHHHHH
Q 040073          288 VCELMLNVLDLLCRCAEGRAELLKHGAG---LAVVSKKILRV--------------------------SHAASDRAVRIL  338 (407)
Q Consensus       288 ~~~~al~~L~~L~~~~~~r~~i~~~~g~---i~~Lv~~l~~~--------------------------s~~~~e~a~~~L  338 (407)
                      .+-.|+-+...|+...+.-..+.. .|.   +.+++..+.-+                          |.+....++.+.
T Consensus       323 ~R~~AClAV~vlat~KE~E~~Vrk-S~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF  401 (832)
T KOG3678|consen  323 LRLHACLAVAVLATNKEVEREVRK-SGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAF  401 (832)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHhh-ccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHH
Confidence            677888888888876654444433 222   22222211100                          112223344444


Q ss_pred             HHHhccC--CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          339 CSVCKFS--ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       339 ~~l~~~~--~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +......  ..+.-...--+-|+|+.|-++..+ .++..-+-|.+.|+.+.+.
T Consensus       402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS-~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASS-PDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHhccc
Confidence            3322110  000001112235899999888874 4666677788899998875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.77  E-value=0.00027  Score=53.68  Aligned_cols=87  Identities=22%  Similarity=0.283  Sum_probs=69.2

Q ss_pred             HHHHHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          187 LESLMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       187 i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      |+.|++.| +++++.+|..++.+|..+-          . ..+++.|+.+++++   ++.++..|+.+|..+.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~-~~~~~~L~~~l~d~---~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------D-PEAIPALIELLKDE---DPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------H-HHHHHHHHHHHTSS---SHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------C-HhHHHHHHHHHcCC---CHHHHHHHHHHHHHhC-------
Confidence            57889988 7789999999999998431          1 25699999999888   9999999999999872       


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                         ...+++.|.+++.+..+..++..|+.+|.
T Consensus        60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               33479999999988645556788887764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00085  Score=61.75  Aligned_cols=187  Identities=21%  Similarity=0.226  Sum_probs=128.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK  266 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~  266 (407)
                      +..++.+|.+.++.++..|+..|..++.. ..+...-.+...++.|.+++...   .+  .+.|+.+|.|++....-++.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~---~~--~~~a~~alVnlsq~~~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL---DP--AEPAATALVNLSQKEELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc---cc--ccHHHHHHHHHHhhHHHHHH
Confidence            45788999999999999999999998765 33322223345788899999876   44  77899999999999988888


Q ss_pred             HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-c----CchHHHHHHHHcCCc---hhhHHHHHHH
Q 040073          267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-G----AGLAVVSKKILRVSH---AASDRAVRIL  338 (407)
Q Consensus       267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~----g~i~~Lv~~l~~~s~---~~~e~a~~~L  338 (407)
                      ++.. .+..++.++.+. ...+.+.++.+|.||+..++....+... .    .|+.-++...-+.+.   ..-.+-..++
T Consensus        79 ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            8887 777788887764 5678899999999999988776655432 2    356666665555432   2345566788


Q ss_pred             HHHhccCCchHHHHHHHHhC--hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          339 CSVCKFSATARVLQEMLQVG--VVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       339 ~~l~~~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                      .+++.....   +.......  -.++|+.+ .+.++..-|...+.+|++
T Consensus       157 ~nls~~~~g---R~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN  201 (353)
T KOG2973|consen  157 ANLSQFEAG---RKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKN  201 (353)
T ss_pred             HHHhhhhhh---hhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHh
Confidence            888876543   23322222  23334333 334455556666667766

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.70  E-value=0.00049  Score=62.50  Aligned_cols=177  Identities=16%  Similarity=0.087  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHhhhC--hhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQS--ERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~--~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i  187 (407)
                      ..|.+|+..|+.+...+  ......+.+  ...+..++..+.+...  .+...|+.++..++..-...-+-..  + ..+
T Consensus        22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~--~-~~l   96 (228)
T PF12348_consen   22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYA--D-ILL   96 (228)
T ss_dssp             HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHH--H-HHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHH--H-HHH
Confidence            99999999999999886  333333332  1455666666665554  3578888888887754332222222  2 278


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhh-HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHH
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEF-FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRI  265 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~  265 (407)
                      |.|+..+.+++..+++.|..+|..+.......      ..+ ++.+...+.++   ++.++..++..|..+..... +..
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccchHh
Confidence            99999999999999999999999998654311      123 45566777787   99999999999998766433 112


Q ss_pred             HHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          266 KAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       266 ~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      .+-.    ...++.+...+.+. ++++++.|-.++..+...-
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHF  208 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHC
Confidence            2111    23677777888776 8999999999999886543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.8e-05  Score=71.75  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             cCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .|+||.+-+.-||.+.|+|.||.-||+--... +..+||+|++++.+
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids   54 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS   54 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence            69999999999999999999999999996665 37889999999977

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.62  E-value=0.00089  Score=60.76  Aligned_cols=187  Identities=19%  Similarity=0.190  Sum_probs=111.9

Q ss_pred             hcCChhHHHHHHHHHHHhhccC---Cchhhhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073          195 KCGNYQSRSYAIMLLKSIFEVA---DPFQLISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG  270 (407)
Q Consensus       195 ~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~  270 (407)
                      .+.+++.|..|..-|..+....   +....+... ..++..++..+.+.   ...+...|+.++..|+..-.+...-.-.
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~---Rs~v~~~A~~~l~~l~~~l~~~~~~~~~   93 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL---RSKVSKTACQLLSDLARQLGSHFEPYAD   93 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            4578999999999999998766   222222111 12334666677666   7789999999999998754433332333


Q ss_pred             CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC--ch
Q 040073          271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA--TA  348 (407)
Q Consensus       271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~--~~  348 (407)
                      ..+|.|++.+.++ ..-+++.|..+|..++.+-..-..+.     ++.+...+.+.++..+..++..|..+....+  ..
T Consensus        94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            5789999999886 67888999999999988554112221     2233443444578899999999998887555  11


Q ss_pred             HHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       349 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      .......-...++.+...+. +.++.+|+.|..++..+.+++.
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-
T ss_pred             hhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCC
Confidence            11111111235566666666 7899999999999999988764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=3e-05  Score=70.23  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      |.|-||.+.|.+||+..|||+||..|-.+.+..  ...|++|++.+..
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK--GEKCYVCSQQTHG  287 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccccc--CCcceeccccccc
Confidence            789999999999999999999999998887754  6789999987643

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.62  E-value=0.0022  Score=62.11  Aligned_cols=237  Identities=11%  Similarity=0.065  Sum_probs=149.7

Q ss_pred             hhhHHHHHHHhcCCC-h--HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           97 KTQIVKILNDAKKSP-S--TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~--~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      .+++..|++.+.+++ +  ++.+|.+.|..+..  .+|++.++..| +..+..+-+.... .+.....+.+|.+|-.+.+
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~-~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREP-VELARSVAGILEHMFKHSE  254 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCc-HHHHHHHHHHHHHHhhhhH
Confidence            345667788888887 4  47888888888754  57899999876 4444444332222 2346777889999888776


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      +...-+.+.|  .+..++-..+..++.+..+++.+|.|++-+.-  ..+.+... .+-+-|.-+-.+.   +.-.+-.|+
T Consensus       255 et~~~Lvaa~--~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~sk---Del~R~~AC  328 (832)
T KOG3678|consen  255 ETCQRLVAAG--GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSK---DELLRLHAC  328 (832)
T ss_pred             HHHHHHHhhc--ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcch---HHHHHHHHH
Confidence            6554455566  48888877788889999999999999986543  33444443 3444455555555   667777888


Q ss_pred             HHHHHhCCCCchHHHHHhcC---chHHHHHHhhccc-------------------------chhHHHHHHHHHHHHhc--
Q 040073          252 KLLVELCPWGRNRIKAVEGG---GVSVLVDLLLDVT-------------------------ERRVCELMLNVLDLLCR--  301 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~~G---~v~~Lv~lL~~~~-------------------------~~~~~~~al~~L~~L~~--  301 (407)
                      -+..-|+.+.+--....+.|   .|+++++.+..+.                         +...-..++++....+.  
T Consensus       329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa  408 (832)
T KOG3678|consen  329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA  408 (832)
T ss_pred             HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence            88888887666444444444   4556666554320                         01122234444433322  


Q ss_pred             --CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          302 --CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       302 --~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                        ...|+.++..+-|+|..|-.+..+.+......|-.+|..+..
T Consensus       409 IKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  409 IKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence              446777777767888887775554444455555566655543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.61  E-value=0.012  Score=56.64  Aligned_cols=255  Identities=11%  Similarity=0.049  Sum_probs=166.5

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV  215 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~  215 (407)
                      .+-+++++++..+... ....++..+..+-..+.....++...    ....-+..+.+|..++.-+.+.+.+++..++..
T Consensus        66 ~v~~fi~LlS~~~kdd-~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDD-TVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHH-HHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            4667778887655422 24555555554433332223333221    001356788999999988888899999998765


Q ss_pred             CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhh-cccchhHHHHHHH
Q 040073          216 ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLL-DVTERRVCELMLN  294 (407)
Q Consensus       216 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~-~~~~~~~~~~al~  294 (407)
                      ...+..-....=....|-..+++.  .+++...-++++|-.+...++.|..++.+.++..|+..+. +..+-.++-..+-
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~--~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif  222 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSS--TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF  222 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence            543322211111234455566664  3778888899999999999999999999999999999994 3335677788899


Q ss_pred             HHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHH----HHHHhChHHHHHHHHhc
Q 040073          295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQ----EMLQVGVVSKLCLVLQV  369 (407)
Q Consensus       295 ~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~----~~~~~g~i~~Ll~ll~~  369 (407)
                      .++.|+-++...+.+ ...+.|+.|.+.+... .+++...+++++.|++...++.+...    .|+..+ +++-+..|+.
T Consensus       223 ciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~  300 (442)
T KOG2759|consen  223 CIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEE  300 (442)
T ss_pred             HHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHh
Confidence            999999888766555 4467889999976554 37888899999999998765544444    455545 5555566654


Q ss_pred             C--CCHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 040073          370 D--ASVKTKERAREILKLNARAWRDSPCVPAH  399 (407)
Q Consensus       370 ~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~~  399 (407)
                      .  .++....--..+-..|......-++.|.|
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY  332 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEY  332 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            4  35555555444555555444333444333

>PTZ00429 beta-adaptin; Provisional

Probab=97.55  E-value=0.042  Score=58.28  Aligned_cols=257  Identities=16%  Similarity=0.145  Sum_probs=154.6

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ..+...++.+.+.+ +.+.-.---|.+.++.+++.-. +    ++..+.+=+.+.++  .++..|+..+..+-.     .
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~Np--~IRaLALRtLs~Ir~-----~  135 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNSSP--VVRALAVRTMMCIRV-----S  135 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCCCH--HHHHHHHHHHHcCCc-----H
Confidence            34556666666665 4444444444455554443211 1    23444444444433  457777777766542     2


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                      .++ +.   .++.+.+.|.+.++-+|..|+.++..+-..+..   .....|+++.|.++|.+.   ++.++.+|+.+|..
T Consensus       136 ~i~-e~---l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~e  205 (746)
T PTZ00429        136 SVL-EY---TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN---NPVVASNAAAIVCE  205 (746)
T ss_pred             HHH-HH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC---CccHHHHHHHHHHH
Confidence            222 22   577888889899999999999999999665443   334457899999999988   99999999999999


Q ss_pred             hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      +....+.... ...+.+..|+..|.+. ++-.+-..+.+|   +.. +.......   ..+..+...+.+.++.+.-.|+
T Consensus       206 I~~~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL---~~y~P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Ai  277 (746)
T PTZ00429        206 VNDYGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELL---AAQRPSDKESAE---TLLTRVLPRMSHQNPAVVMGAI  277 (746)
T ss_pred             HHHhCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHH---HhcCCCCcHHHH---HHHHHHHHHhcCCCHHHHHHHH
Confidence            9875443322 2345567777777654 333333444444   332 22222211   2345555656666777788888


Q ss_pred             HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +++..+.... +.+....+.. ....+|+.++.  +++.+|.-+-.-+..+..
T Consensus       278 k~il~l~~~~-~~~~~~~~~~-rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        278 KVVANLASRC-SQELIERCTV-RVNTALLTLSR--RDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHHHHhcCcC-CHHHHHHHHH-HHHHHHHHhhC--CCccHHHHHHHHHHHHHH
Confidence            8888887543 2223333221 12255666543  367888888776666655

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.0083  Score=60.68  Aligned_cols=274  Identities=13%  Similarity=0.084  Sum_probs=180.2

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHH-h---cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLE-A---AGAIEFLATIITKSDAGSDECDEALSILYHLNVS  171 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~-~---~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  171 (407)
                      +..++.|...|.+++ ..+..|..+|.+++.++++.-+.-+ .   .-.+|.++++.++.++  ..+.+|+..+-..-..
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp--kiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP--KIRSHAVGCVNQFIII  204 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--hHHHHHHhhhhheeec
Confidence            556788888888887 7788899999999988765322211 1   2468899999998866  3488888876554443


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ..  ..+...-+ ++++.+..+-...++++|.+.+.++..|......+-.-- -.++|...+..-++.   +.++.-.|+
T Consensus       205 ~~--qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~---dE~VALEAC  277 (885)
T KOG2023|consen  205 QT--QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDV---DENVALEAC  277 (885)
T ss_pred             Cc--HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCc---chhHHHHHH
Confidence            32  33333333 378888888877899999999999999987665543322 247788888888877   888999999


Q ss_pred             HHHHHhCCCCchHHHHHhc--CchHHHHHH----------hhcccc----------------------------------
Q 040073          252 KLLVELCPWGRNRIKAVEG--GGVSVLVDL----------LLDVTE----------------------------------  285 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~~--G~v~~Lv~l----------L~~~~~----------------------------------  285 (407)
                      .....++..+--+..+...  ..||.|++-          |.+..+                                  
T Consensus       278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd  357 (885)
T KOG2023|consen  278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD  357 (885)
T ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence            9999999877544444442  466666652          220000                                  


Q ss_pred             -----------hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH
Q 040073          286 -----------RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM  354 (407)
Q Consensus       286 -----------~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~  354 (407)
                                 =+++.-.+++|..|+.-  -+.++...  .+|.|=+.|.+..=..+|.++-+|..++.+.     ..-+
T Consensus       358 De~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-----M~g~  428 (885)
T KOG2023|consen  358 DEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLSSEEWKVREAGVLALGAIAEGC-----MQGF  428 (885)
T ss_pred             cccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-----hhhc
Confidence                       12444555666666541  23344442  3444444343323456888888888888543     3333


Q ss_pred             HHh--ChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          355 LQV--GVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       355 ~~~--g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +..  -.+|.|+.+|. +..+-+|....|.|..++..
T Consensus       429 ~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  429 VPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             ccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhh
Confidence            332  36777788886 56788888888888776653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.002  Score=63.47  Aligned_cols=188  Identities=11%  Similarity=0.048  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHH
Q 040073          115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVL  194 (407)
Q Consensus       115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL  194 (407)
                      ..++..|..+++.-...|.-+.++.+.+.|+++|++++-  -+.--+...++|+...=.+.+..+...+  .|..|+.++
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--mi~~~~t~~icn~vv~fsnL~~~fL~~~--iIdvl~~~v  482 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--MIEFPDTIDICNKVVPFSNLGAGFLEKS--IIDVLVNLV  482 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--eeeccchhhhhheeeeccchHHHHHHhh--HHHHHHHHh
Confidence            345667777877656678899999999999999998654  2244456677776554444555555555  899999999


Q ss_pred             hcCChhHHHHHHHHHHHhhccCCchhh--hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-ch---HHHHH
Q 040073          195 KCGNYQSRSYAIMLLKSIFEVADPFQL--ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RN---RIKAV  268 (407)
Q Consensus       195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~--i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n---~~~~v  268 (407)
                      .+.+...+.+..|.|+++...+++...  ....-| +..++++.+++   .-.+++..+..|+|+..+. .|   +..+.
T Consensus       483 ~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDp---c~~vq~q~lQilrNftc~~~knEkskdv~~  558 (743)
T COG5369         483 MSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDP---CFKVQHQVLQILRNFTCDTSKNEKSKDVFI  558 (743)
T ss_pred             hcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCc---ccccHHHHHHHHHhcccccccccccceeEE
Confidence            988889999999999999877766532  333344 78899999887   8899999999999987632 22   22222


Q ss_pred             hcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073          269 EGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK  311 (407)
Q Consensus       269 ~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~  311 (407)
                      ...    ....|++.+... ++-..+..+-+|.+++.++++...++.
T Consensus       559 K~~p~~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~  604 (743)
T COG5369         559 KATPRRYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQ  604 (743)
T ss_pred             ecChHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHH
Confidence            221    233455555554 343345557777777776666655543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.038  Score=51.16  Aligned_cols=235  Identities=12%  Similarity=0.190  Sum_probs=149.3

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ...++.+.+.+...+. -..|+..|-+++.+ +..|+.+.+. .+..+...+.++..  ..-+....+|.||+..+....
T Consensus        43 ~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~  117 (353)
T KOG2973|consen   43 EALLKDLTQLLKDLDP-AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVA  117 (353)
T ss_pred             hhhHHHHHHHccCccc-ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHH
Confidence            3345555555554433 56788889999876 6777777776 78888888877654  236778889999998876544


Q ss_pred             hHhhc-c----chhhHHHHHHHHhcC-C-hhHHHHHHHHHHHhhccCCchhhhhchhhh-HHHHHHHcccCCCCCHHHHH
Q 040073          177 SIVIN-N----GEEFLESLMRVLKCG-N-YQSRSYAIMLLKSIFEVADPFQLISVKQEF-FTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       177 ~~i~~-~----gg~~i~~Lv~lL~~~-~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      .++.. .    .| .+.........+ + ..--.+.+.++.+|+.....+..+....-+ +..|.. +.+.   +..+++
T Consensus       118 ~ll~~~~~~~~~~-lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~-ft~~---~s~vRr  192 (353)
T KOG2973|consen  118 ALLTNLTEKKDSG-LMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLP-FTSE---DSQVRR  192 (353)
T ss_pred             HHHHhcccccccc-hHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhc-cccc---chhhhc
Confidence            44332 1    32 444444555443 3 233467888889999887777666554311 111222 2223   444554


Q ss_pred             HH-HHHHHHhCCCCchHHHHHhc--CchHHHHHHhhc-------------------------ccchhHHHHHHHHHHHHh
Q 040073          249 AA-LKLLVELCPWGRNRIKAVEG--GGVSVLVDLLLD-------------------------VTERRVCELMLNVLDLLC  300 (407)
Q Consensus       249 ~A-~~aL~~L~~~~~n~~~~v~~--G~v~~Lv~lL~~-------------------------~~~~~~~~~al~~L~~L~  300 (407)
                      .+ +++|.|.|-...+...++..  ..+|.|+.-|.+                         .+++.++..-+.+|..||
T Consensus       193 ~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc  272 (353)
T KOG2973|consen  193 GGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC  272 (353)
T ss_pred             cchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH
Confidence            44 78999999888888887764  355555443322                         126678889999999999


Q ss_pred             cCHhhHHHHHhccCchHHHHHHHHcC--CchhhHHHHHHHHHHhc
Q 040073          301 RCAEGRAELLKHGAGLAVVSKKILRV--SHAASDRAVRILCSVCK  343 (407)
Q Consensus       301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~l~~  343 (407)
                      ....||..+.+.  |+..+++-+..+  ++...+.+-.+.-.+..
T Consensus       273 aT~~GRe~lR~k--gvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  273 ATRAGREVLRSK--GVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hhhHhHHHHHhc--CchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            999999988873  567777767655  34555555444444444

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.51  E-value=0.011  Score=59.31  Aligned_cols=266  Identities=15%  Similarity=0.107  Sum_probs=169.9

Q ss_pred             HHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh--------ccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH
Q 040073          117 CLRRLRSITLQSERNRSCLEAAGAIEFLATIIT--------KSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE  188 (407)
Q Consensus       117 al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~--------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~  188 (407)
                      ||.+|+.+.++ +.+.+.+....++..|++.-.        .......+..+|+..|+|+-..++..+....+.|  ..+
T Consensus         1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~--~~~   77 (446)
T PF10165_consen    1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG--LAE   77 (446)
T ss_pred             CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC--cHH
Confidence            46778888776 667777777666777776651        1112234689999999998888887888888877  588


Q ss_pred             HHHHHHhcC-----ChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHccc-------CC-------CCCHHHHH
Q 040073          189 SLMRVLKCG-----NYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRD-------HH-------QFSQQASK  248 (407)
Q Consensus       189 ~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-------~~-------~~~~~~~~  248 (407)
                      .++..|+..     +.+..-...++|+-++... +....+....+++..|+..|..       ..       ..+.++..
T Consensus        78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~  157 (446)
T PF10165_consen   78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS  157 (446)
T ss_pred             HHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence            999999876     7888888999998887543 4455566655667777766531       00       01446777


Q ss_pred             HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---c-----chhHHHHHHHHHHHHhcCH-hh-------HHHH---
Q 040073          249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---T-----ERRVCELMLNVLDLLCRCA-EG-------RAEL---  309 (407)
Q Consensus       249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---~-----~~~~~~~al~~L~~L~~~~-~~-------r~~i---  309 (407)
                      .++++|+|+.........-.+.+.++.|+.+|..-   .     .......++.+|.++-... +.       ...+   
T Consensus       158 EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~  237 (446)
T PF10165_consen  158 EILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPE  237 (446)
T ss_pred             HHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCC
Confidence            88999999987544333223345677777766532   1     2355667777777773211 10       0000   


Q ss_pred             HhccCchHHHHHHHHcC----C--c--hhhHHHHHHHHHHhccCCchHHHHHHHH----------------hChHHHHHH
Q 040073          310 LKHGAGLAVVSKKILRV----S--H--AASDRAVRILCSVCKFSATARVLQEMLQ----------------VGVVSKLCL  365 (407)
Q Consensus       310 ~~~~g~i~~Lv~~l~~~----s--~--~~~e~a~~~L~~l~~~~~~~~~~~~~~~----------------~g~i~~Ll~  365 (407)
                      ......+..|+.+|.+.    .  .  ..-..-+.+|..++..+  +.++..+..                ...-.+|+.
T Consensus       238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlr  315 (446)
T PF10165_consen  238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLR  315 (446)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHH
Confidence            01123455666655432    1  1  23445566777777654  234444433                245678999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHh
Q 040073          366 VLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       366 ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +|.+.. +..|..++++|-.|++
T Consensus       316 Lmt~~~-~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  316 LMTSPD-PQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhCCCC-chHHHHHHHHHHHHHh
Confidence            998654 9999999999988876

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.51  E-value=7.4e-05  Score=72.56  Aligned_cols=51  Identities=22%  Similarity=0.314  Sum_probs=43.9

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCcccccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQET   58 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~~   58 (407)
                      .+..|-+|.+.-.||+...|.|+|||-||.+|....   .+.+||.|...++.+
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            347899999999999999999999999999987642   357899999888763

>TIGR02270 conserved hypothetical protein

Probab=97.49  E-value=0.016  Score=57.18  Aligned_cols=198  Identities=16%  Similarity=0.026  Sum_probs=107.9

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ  220 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~  220 (407)
                      +..|+..|.+.+.  .++..++.+|..+           ....  +.+.|+.+|++.++.++..+..++...        
T Consensus        88 ~~~L~~~L~d~~~--~vr~aaa~ALg~i-----------~~~~--a~~~L~~~L~~~~p~vR~aal~al~~r--------  144 (410)
T TIGR02270        88 LRSVLAVLQAGPE--GLCAGIQAALGWL-----------GGRQ--AEPWLEPLLAASEPPGRAIGLAALGAH--------  144 (410)
T ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHhcC-----------CchH--HHHHHHHHhcCCChHHHHHHHHHHHhh--------
Confidence            6777777776554  3466666666531           1111  566777777777777776666555441        


Q ss_pred             hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073          221 LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC  300 (407)
Q Consensus       221 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~  300 (407)
                        .  ....+.|+.+|++.   ++.++..|+++|..|..          ..+++.|...+.+. ++.++..|+..|..+-
T Consensus       145 --~--~~~~~~L~~~L~d~---d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~-~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       145 --R--HDPGPALEAALTHE---DALVRAAALRALGELPR----------RLSESTLRLYLRDS-DPEVRFAALEAGLLAG  206 (410)
T ss_pred             --c--cChHHHHHHHhcCC---CHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence              1  12346677777776   78888888888876542          23455566666664 6777777777776663


Q ss_pred             cCHhhHHHHHh--ccCchHHHH--HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH-------HHhChHHHHHHHHhc
Q 040073          301 RCAEGRAELLK--HGAGLAVVS--KKILRVSHAASDRAVRILCSVCKFSATARVLQEM-------LQVGVVSKLCLVLQV  369 (407)
Q Consensus       301 ~~~~~r~~i~~--~~g~i~~Lv--~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~-------~~~g~i~~Ll~ll~~  369 (407)
                      . ++....+..  ...|.+.-.  ..++...  ....++..|..+.....   ++..+       ....+++.|+..+. 
T Consensus       207 ~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~---vr~~a~~AlG~lg~p~av~~L~~~l~-  279 (410)
T TIGR02270       207 S-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAA---TRREALRAVGLVGDVEAAPWCLEAMR-  279 (410)
T ss_pred             C-HhHHHHHHHHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChh---hHHHHHHHHHHcCCcchHHHHHHHhc-
Confidence            3 222211111  011111110  1111100  11133344444443211   12111       12357888888776 


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 040073          370 DASVKTKERAREILKLNAR  388 (407)
Q Consensus       370 ~~~~~~k~~A~~lL~~l~~  388 (407)
                        .+..++.|.+.++.+.-
T Consensus       280 --d~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       280 --EPPWARLAGEAFSLITG  296 (410)
T ss_pred             --CcHHHHHHHHHHHHhhC
Confidence              34489999999988754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.47  E-value=0.017  Score=55.53  Aligned_cols=226  Identities=12%  Similarity=0.149  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      +...-++++|..+... +++|..++.+.++..|+..|.+...+-.++.+.+-.+..|+.+..- .+.+...+  .|+.|.
T Consensus       172 ~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~--li~~L~  247 (442)
T KOG2759|consen  172 DYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFD--LIQDLS  247 (442)
T ss_pred             chHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhcc--HHHHHH
Confidence            6667788899999987 8999999999999999999964444445688888899999987754 45554433  899999


Q ss_pred             HHHhcC-ChhHHHHHHHHHHHhhccCCch---h---hhhchhhhHHHHHHHcccCCCCCHHHHHHHHH--------HHHH
Q 040073          192 RVLKCG-NYQSRSYAIMLLKSIFEVADPF---Q---LISVKQEFFTEIVNVLRDHHQFSQQASKAALK--------LLVE  256 (407)
Q Consensus       192 ~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~---~---~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~--------aL~~  256 (407)
                      .++++. ...+-.-.+.+++|+....+.+   +   .-+...+ ++.-++.|...+ ++++=....+.        -...
T Consensus       248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rk-ysDEDL~~di~~L~e~L~~svq~  325 (442)
T KOG2759|consen  248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERK-YSDEDLVDDIEFLTEKLKNSVQD  325 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence            999874 4445566777888887665322   1   2233333 556666665431 23222222221        1122


Q ss_pred             hCCCC------------------------chHHHHHhc--CchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHH
Q 040073          257 LCPWG------------------------RNRIKAVEG--GGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAEL  309 (407)
Q Consensus       257 L~~~~------------------------~n~~~~v~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i  309 (407)
                      |++.+                        +|...+-+.  ..+..|+.+|....++.+...|+.=+..... .|+||..+
T Consensus       326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv  405 (442)
T KOG2759|consen  326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVV  405 (442)
T ss_pred             hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHH
Confidence            22221                        255555553  3788899999886556665666666665555 68888766


Q ss_pred             HhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          310 LKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       310 ~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      .. .||=..++++|.+.+++++-+|+.++..+..+
T Consensus       406 ~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  406 EK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            55 78889999988777899999999998877653

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=7.4e-05  Score=66.99  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             CcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      .+..||+|++.-..|.+.- |||.||.-||..-+..+..++||.|+...
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~  286 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV  286 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence            4569999999999999885 99999999999977654478999999765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.02  Score=53.43  Aligned_cols=280  Identities=14%  Similarity=0.130  Sum_probs=170.2

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHH--HHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFL--ATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~L--v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      +-++.++.-+-+.+ ++...|.+.|..++.. +..-..+++......+  .++-...++  .++...+..+..+..-...
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcnd--iaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCND--IARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhh--HHHHHHHHHHHHHHhcCHH
Confidence            33445566666666 7778888999999887 6667777776655443  222223333  4577777777766554444


Q ss_pred             HHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH--
Q 040073          175 LKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL--  251 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~--  251 (407)
                      ........|  .+..|..-|+. .+.-++.+.......|+.....++.+.. .|.|..+-+++...+ .+|--+-.++  
T Consensus       205 saneckkSG--LldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad-sdPfekfralmg  280 (524)
T KOG4413|consen  205 SANECKKSG--LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD-SDPFEKFRALMG  280 (524)
T ss_pred             HHhHhhhhh--HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC-CCcHHHHHHHHH
Confidence            555566565  78888777765 5777888999999999887777666555 688888888886431 1332222232  


Q ss_pred             --HHHHHhCCCCchHHHHHhc--CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH---HHHHHH
Q 040073          252 --KLLVELCPWGRNRIKAVEG--GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV---VSKKIL  324 (407)
Q Consensus       252 --~aL~~L~~~~~n~~~~v~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~---Lv~~l~  324 (407)
                        +.+.++...+-.-.++++.  -+|....+++... |+...+.|..+|..|-.+.+|+.-+...  |-|.   ++....
T Consensus       281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkT--gppaaehllaraf  357 (524)
T KOG4413|consen  281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKT--GPPAAEHLLARAF  357 (524)
T ss_pred             HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhcc--CChHHHHHHHHHh
Confidence              2333333322222233332  1334444555554 7889999999999999999999877663  3333   333333


Q ss_pred             cCC-chhhHHHHHHHHHHhccCC---c--------hHHHHHHHH----h---ChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          325 RVS-HAASDRAVRILCSVCKFSA---T--------ARVLQEMLQ----V---GVVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       325 ~~s-~~~~e~a~~~L~~l~~~~~---~--------~~~~~~~~~----~---g~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                      +.+ ..-++.++.+|.++++.-.   +        ..++..+.+    .   .-+...+.+++ .+.++.+-.|-+.+..
T Consensus       358 dqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq-QpfpEihcAalktfTA  436 (524)
T KOG4413|consen  358 DQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ-QPFPEIHCAALKTFTA  436 (524)
T ss_pred             cccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc-CCChhhHHHHHHHHHH
Confidence            333 3457888889998887532   1        111111111    1   22233445555 4578888888777766


Q ss_pred             HHh
Q 040073          386 NAR  388 (407)
Q Consensus       386 l~~  388 (407)
                      +..
T Consensus       437 iaa  439 (524)
T KOG4413|consen  437 IAA  439 (524)
T ss_pred             HHc
Confidence            543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.39  E-value=0.00019  Score=53.30  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             CcccCccccccCcC-ceec-CCcccccHHHHHHHHhcC-CCCCCccccccc
Q 040073            8 AHFLCPISLQLMRD-PVTV-STGITYDRVNIERWLFTC-KNNTCPVTKQVL   55 (407)
Q Consensus         8 ~~~~Cpi~~~~~~d-Pv~~-~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~   55 (407)
                      -+-.||.|...=.| |++. .|||.|-.+||.+|+... ....||.|+++.
T Consensus        31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            34456666655555 6655 699999999999999863 257899999875

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=7.8e-05  Score=76.49  Aligned_cols=49  Identities=24%  Similarity=0.554  Sum_probs=42.6

Q ss_pred             CCcccCccccccCcC-----ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRD-----PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~d-----Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ..+-.|+||.|.|..     |=.++|||.|...|+.+|+++  ..+||.|+..+.+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhhc
Confidence            335699999999999     778999999999999999987  7899999985433

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.28  E-value=9.3e-05  Score=70.19  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             CCcccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT   42 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~   42 (407)
                      .++++||||+..|+||++++|||+.||.|-..-+.+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence            578999999999999999999999999998876544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.28  E-value=0.15  Score=51.16  Aligned_cols=231  Identities=19%  Similarity=0.126  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCChhHH-HhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSESYL-KSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~-~~~i~~~gg~~i  187 (407)
                      +...+|+++|.|+.-.++..|..+++.|..+.++..|+...+   +.++..-...+|+.++...... ++++.+.+  .+
T Consensus        47 ~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~--~~  124 (446)
T PF10165_consen   47 DVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH--GV  124 (446)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh--hH
Confidence            778899999999999999999999999999999999987732   2345777888888777654444 45555544  47


Q ss_pred             HHHHHHHhc-------C----------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc------CCCCCH
Q 040073          188 ESLMRVLKC-------G----------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD------HHQFSQ  244 (407)
Q Consensus       188 ~~Lv~lL~~-------~----------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~  244 (407)
                      ..++..|..       .          +.+....+.++++|+..+...... -...+.++.|+.++..      ......
T Consensus       125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~  203 (446)
T PF10165_consen  125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLD  203 (446)
T ss_pred             HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence            767666542       0          223345677778888765544332 1123446666655431      111234


Q ss_pred             HHHHHHHHHHHHhCCCCc-h-------HHH----HHhcCchHHHHHHhhccc----c---hhHHHHHHHHHHHHhcCH-h
Q 040073          245 QASKAALKLLVELCPWGR-N-------RIK----AVEGGGVSVLVDLLLDVT----E---RRVCELMLNVLDLLCRCA-E  304 (407)
Q Consensus       245 ~~~~~A~~aL~~L~~~~~-n-------~~~----~v~~G~v~~Lv~lL~~~~----~---~~~~~~al~~L~~L~~~~-~  304 (407)
                      .....+..+|.|+-.... .       ...    -.....+..|+++|...-    .   .+...-.+.+|..++... .
T Consensus       204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~  283 (446)
T PF10165_consen  204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE  283 (446)
T ss_pred             hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence            667778888888732100 0       100    122346777787776531    1   134456677777777753 3


Q ss_pred             hHHHHHhc--------------cCc-hHHHHHHHHcCCchhhHHHHHHHHHHhccC
Q 040073          305 GRAELLKH--------------GAG-LAVVSKKILRVSHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       305 ~r~~i~~~--------------~g~-i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~  345 (407)
                      .|..+...              +.. -..|+++|....+..+..+...|+.||..+
T Consensus       284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            34444331              222 246777666556888999999999999743

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.02  Score=60.73  Aligned_cols=194  Identities=16%  Similarity=0.101  Sum_probs=132.9

Q ss_pred             hHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHH--hcCCChhHHH
Q 040073           99 QIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILY--HLNVSESYLK  176 (407)
Q Consensus        99 ~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~--~L~~~~~~~~  176 (407)
                      ++|-.++-|-+. --|..||..|.....-.+=....-..-|+.|-++++|.+...  + +.-.+-.|.  .|+.+..-+.
T Consensus       473 QLPiVLQVLLSQ-vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--E-LrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQ-VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--E-LRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--h-hhhhHHHHHHHHHhcCchhHH
Confidence            334344444332 335566666666554445555666678999999999998755  2 333333333  3666665556


Q ss_pred             hHhhccchhhHHHHHHHHhc-C--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKC-G--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~-~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      +++.++|   -.-++..|.. +  +++-|..|+-+|..+...-..-+......+.|..-...|+++  ..+=.+...+-+
T Consensus       549 dLvKe~g---~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~--~~pLLrQW~~ic  623 (1387)
T KOG1517|consen  549 DLVKENG---YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD--PEPLLRQWLCIC  623 (1387)
T ss_pred             HHHhccC---ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC--ccHHHHHHHHHH
Confidence            7777654   4455566655 2  457788888889988766544455555567777777888775  146677888888


Q ss_pred             HHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073          254 LVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       254 L~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~  302 (407)
                      |..|-.+ +.+|-.=++.++.+.|+.+|.+. -++++..|+-+|..+-.+
T Consensus       624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             HHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence            8888874 55777778889999999999986 789999999999988764

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.19  Score=53.77  Aligned_cols=248  Identities=16%  Similarity=0.119  Sum_probs=150.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      ..+.-|++.+..+.. +.+....+++.|.+..|+.+|-+..+   .++.++.+|+.|+.+.+-.++.+.. |  ++.-+.
T Consensus      1787 ~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS~PS---~R~~vL~vLYAL~S~~~i~keA~~h-g--~l~yil 1859 (2235)
T KOG1789|consen 1787 KLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHSQPS---MRARVLDVLYALSSNGQIGKEALEH-G--GLMYIL 1859 (2235)
T ss_pred             hHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhcChH---HHHHHHHHHHHHhcCcHHHHHHHhc-C--chhhhh
Confidence            566677777766654 36677888889999999999986554   3889999999999877655555543 4  354555


Q ss_pred             HHHhc-CChhHHHHHHHHHHHhhccCC--chhhhhc----hhhh-------HHHHHHHcccC------------------
Q 040073          192 RVLKC-GNYQSRSYAIMLLKSIFEVAD--PFQLISV----KQEF-------FTEIVNVLRDH------------------  239 (407)
Q Consensus       192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~----~~g~-------i~~Lv~lL~~~------------------  239 (407)
                      .++-. .+...|..|+..+..+....-  .+..|..    -.|+       -++.|.++...                  
T Consensus      1860 ~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~ 1939 (2235)
T KOG1789|consen 1860 SILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSG 1939 (2235)
T ss_pred             HHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHH
Confidence            55543 467777777777777653320  1111100    0000       01111111100                  


Q ss_pred             ---------------CC--------------------------------------CCH----------------------
Q 040073          240 ---------------HQ--------------------------------------FSQ----------------------  244 (407)
Q Consensus       240 ---------------~~--------------------------------------~~~----------------------  244 (407)
                                     ++                                      .+|                      
T Consensus      1940 ~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peq 2019 (2235)
T KOG1789|consen 1940 IIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQ 2019 (2235)
T ss_pred             HHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCccc
Confidence                           00                                      000                      


Q ss_pred             HHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH
Q 040073          245 QASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI  323 (407)
Q Consensus       245 ~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l  323 (407)
                      ....--..|+..|-+ ++.-...+-..|.+|.+++.+.-. +..+-..|+.+|..|+.+.--..++..- ..+..++..|
T Consensus      2020 h~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~m 2097 (2235)
T KOG1789|consen 2020 HELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSM 2097 (2235)
T ss_pred             chhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHH
Confidence            001111122222222 222334444569999999888765 4566688999999999977655555543 3455677766


Q ss_pred             HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073          324 LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD  370 (407)
Q Consensus       324 ~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~  370 (407)
                      .+. ...--.|+.+|..+.....+ +...++.+.|.++.|+.+|...
T Consensus      2098 kK~-~~~~GLA~EalkR~~~r~~~-eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2098 KKQ-PSLMGLAAEALKRLMKRNTG-ELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHhHH-HHHHHHhccCcHHHHHHHhccc
Confidence            553 33344788999998886544 5888899999999999999643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.23  E-value=0.00011  Score=62.42  Aligned_cols=46  Identities=22%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      |.|-||.+-++.||+..|||.||-.|-.+-...  ...|-+|+....-
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t~G  242 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK--GDECGVCGKATYG  242 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc--CCcceecchhhcc
Confidence            899999999999999999999999997765543  6689999987644

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.19  E-value=0.00077  Score=42.98  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      ++++..+++.|+++.|+++|.++ +.+++..++++|.+|+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            34788899999999999999976 89999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.19  E-value=0.002  Score=48.79  Aligned_cols=88  Identities=22%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ  220 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~  220 (407)
                      ||.|++.|.++.+ ..++..|+.+|..+.  +         ..  +++.|+.+++++++.+|..|+.+|..+.       
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~--~---------~~--~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELG--D---------PE--AIPALIELLKDEDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCT--H---------HH--HHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcC--C---------Hh--HHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence            6889999944333 246888888887432  1         12  6899999999999999999999999872       


Q ss_pred             hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          221 LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       221 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                          ...+++.|.+++.++  .+..++..|+.+|.
T Consensus        60 ----~~~~~~~L~~~l~~~--~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ----DPEAIPALIKLLQDD--DDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHcCC--CcHHHHHHHHhhcC
Confidence                235789999999876  25667888888873

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=97.16  E-value=0.00033  Score=62.54  Aligned_cols=46  Identities=30%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             cccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccc
Q 040073            9 HFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQV   54 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~   54 (407)
                      +++|||+......||+.. |||.|+|..|...+.......||+-+.+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            479999999999999874 9999999999998854335679998876

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.031  Score=55.62  Aligned_cols=204  Identities=14%  Similarity=0.092  Sum_probs=137.5

Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      .+++..-. ..++.|...|...+.++|..+-.+|.++...=.+....+.....++.||..+++.   ++..+..|+.-|.
T Consensus       200 ~~m~~yl~-~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~  275 (675)
T KOG0212|consen  200 LEMISYLP-SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS---EPEIQLKALTWIQ  275 (675)
T ss_pred             HHHHhcch-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC---cHHHHHHHHHHHH
Confidence            34454434 3778888999999999998877776665432222222324445788999999988   9999999988888


Q ss_pred             HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHH---HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073          256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLN---VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~---~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      ....-..+..-..-.|.+..++..+.+.....+++.+..   .|..+......+.. ++-+..|..+-+.+.+.....+-
T Consensus       276 efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri  354 (675)
T KOG0212|consen  276 EFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRI  354 (675)
T ss_pred             HHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHH
Confidence            877755544444456777778878876522234443332   35556665555544 33334566777766666688899


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .++..+..+-...+++   --......++.|+.-|. +.++.+-..+-.++.-++.
T Consensus       355 ~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLs-d~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  355 AVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLS-DRSDEVVLLALSLLASICS  406 (675)
T ss_pred             HHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhc-CchhHHHHHHHHHHHHHhc
Confidence            9999999998877763   22223578888888886 6688888888887776665

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.11  E-value=0.0019  Score=50.22  Aligned_cols=68  Identities=10%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc
Q 040073          114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN  181 (407)
Q Consensus       114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~  181 (407)
                      +...++.|.+++..++.+++.+++.|+||.+++.-.-++...-.+|.|+.++.+|+.++++++++|..
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45678889999999999999999999999999987655544346999999999999999999988875

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.00032  Score=61.86  Aligned_cols=37  Identities=30%  Similarity=0.582  Sum_probs=33.3

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT   42 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~   42 (407)
                      |-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            4455599999999999999999999999999999864

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00031  Score=65.54  Aligned_cols=46  Identities=22%  Similarity=0.500  Sum_probs=39.0

Q ss_pred             CcccCccccccCcCc-------------eecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            8 AHFLCPISLQLMRDP-------------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      .+-.|-||++-|-+|             =-++|||-+--+|++.|.++  ..+||+|+.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence            456899999775443             58999999999999999986  78999999984

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.09  E-value=0.05  Score=48.83  Aligned_cols=152  Identities=14%  Similarity=0.166  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCChh-HHHhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVSES-YLKSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~-~~~~~i~~~gg~~i  187 (407)
                      ...+.|+.-|.-++.+ ++.|..+.++.+---|-.+|...+.+   +-.+-.++++|+.|...++ +...++...+  ++
T Consensus        94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te--IV  170 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE--IV  170 (293)
T ss_pred             chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh--hH
Confidence            4456788888888877 89999999998766667777654432   2347788999998877554 3345555555  99


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIV-NVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      |..++.+..|+...+.-|+.++..+..++..-..++....       .+.-+| .+.+.+   ++...+.+.++..+|+.
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999877776555544322       222233 233345   89999999999999998


Q ss_pred             CCchHHHHHh
Q 040073          260 WGRNRIKAVE  269 (407)
Q Consensus       260 ~~~n~~~~v~  269 (407)
                      ++..|..+..
T Consensus       248 nprar~aL~~  257 (293)
T KOG3036|consen  248 NPRARAALRS  257 (293)
T ss_pred             CHHHHHHHHh
Confidence            8877766543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.026  Score=56.88  Aligned_cols=187  Identities=19%  Similarity=0.222  Sum_probs=115.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK  266 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~  266 (407)
                      ++.++.-+....+..+..++..|..++...+..-.... ..+||.|.+.|-+.   .+++++++..+|.++++.-+|.. 
T Consensus       256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT---~~evr~a~~~~l~~~~svidN~d-  330 (569)
T KOG1242|consen  256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT---KPEVRKAGIETLLKFGSVIDNPD-  330 (569)
T ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC---CHHHHHHHHHHHHHHHHhhccHH-
Confidence            34444333334788999999999988765544333333 47899999999887   99999999999999998777655 


Q ss_pred             HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC
Q 040073          267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA  346 (407)
Q Consensus       267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~  346 (407)
                      |..  .+|.|++-+.+. . .-..+++..|..-.--..--..-.  +-.+|.|-+-+...+...++.++.+.+|+|..-.
T Consensus       331 I~~--~ip~Lld~l~dp-~-~~~~e~~~~L~~ttFV~~V~~psL--almvpiL~R~l~eRst~~kr~t~~IidNm~~Lve  404 (569)
T KOG1242|consen  331 IQK--IIPTLLDALADP-S-CYTPECLDSLGATTFVAEVDAPSL--ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE  404 (569)
T ss_pred             HHH--HHHHHHHHhcCc-c-cchHHHHHhhcceeeeeeecchhH--HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence            222  478888888764 2 123444444433222111000001  1223444444444466778899999999998765


Q ss_pred             chHHHHHHHHhChHHHHHHHHhc---CCCHHHHHHHHHHH-HHHHhh
Q 040073          347 TARVLQEMLQVGVVSKLCLVLQV---DASVKTKERAREIL-KLNARA  389 (407)
Q Consensus       347 ~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~k~~A~~lL-~~l~~~  389 (407)
                      |.   ..+  +-.++.|+--++.   +..|++|.-|+..| .++++.
T Consensus       405 Dp---~~l--apfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  405 DP---KDL--APFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             CH---HHH--hhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            53   121  2244444433332   34799999999999 555443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.0089  Score=60.45  Aligned_cols=176  Identities=13%  Similarity=0.155  Sum_probs=124.7

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH--hHhhc-cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK--SIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA  216 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~i~~-~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~  216 (407)
                      ++|.|..+|.+.+..  .+|-|..+|.-++.+..+.-  +.... -+ -.+|.+++..++.++.+|..|..++.......
T Consensus       129 lLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~-~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLN-IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             HHHHHHHHhcCCccc--ccchhHHHHHHHHhhhHHHHhhhcccCchH-HhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            478899999988763  38899999998887654321  11111 01 16889999999999999999999998765443


Q ss_pred             CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH
Q 040073          217 DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL  296 (407)
Q Consensus       217 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L  296 (407)
                      ...-.... ..+++.|..+-.+.   +++++++.+.+|..|......|..--=.|+|+.+++.-.+. +.++.-+|+...
T Consensus       206 ~qal~~~i-D~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFw  280 (885)
T KOG2023|consen  206 TQALYVHI-DKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFW  280 (885)
T ss_pred             cHHHHHHH-HHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHH
Confidence            33322222 35788888888777   99999999999999987555443322246778888777775 788999999999


Q ss_pred             HHHhcCHhhHHHHHhc-cCchHHHHHHH
Q 040073          297 DLLCRCAEGRAELLKH-GAGLAVVSKKI  323 (407)
Q Consensus       297 ~~L~~~~~~r~~i~~~-~g~i~~Lv~~l  323 (407)
                      ..+|..+--+..+..+ ...||.|+.-|
T Consensus       281 la~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  281 LALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence            9999988555555433 24566666543

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00024  Score=67.07  Aligned_cols=47  Identities=21%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             ccCccccccCcCc--e-ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDP--V-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dP--v-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      +.|-||+|-|.+=  | +|||+|.|=..||..|+.+. ...||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence            6999999988753  3 78999999999999999874 5679999986543

>TIGR02270 conserved hypothetical protein

Probab=97.04  E-value=0.14  Score=50.60  Aligned_cols=195  Identities=17%  Similarity=0.050  Sum_probs=121.9

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF  219 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~  219 (407)
                      +++.|+..|....++. +...++.++  ....          .. .++..|+..|...+..++..++.+|..+-      
T Consensus        55 a~~~L~~aL~~d~~~e-v~~~aa~al--~~~~----------~~-~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------  114 (410)
T TIGR02270        55 ATELLVSALAEADEPG-RVACAALAL--LAQE----------DA-LDLRSVLAVLQAGPEGLCAGIQAALGWLG------  114 (410)
T ss_pred             HHHHHHHHHhhCCChh-HHHHHHHHH--hccC----------Ch-HHHHHHHHHhcCCCHHHHHHHHHHHhcCC------
Confidence            5788888886554422 233333322  1111          11 13788999998888889999999988541      


Q ss_pred             hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073          220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL  299 (407)
Q Consensus       220 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  299 (407)
                          . .+..+.|+.+|++.   ++.++..++.++..           ......+.|+.+|.+. +..++..|+.+|..+
T Consensus       115 ----~-~~a~~~L~~~L~~~---~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l  174 (410)
T TIGR02270       115 ----G-RQAEPWLEPLLAAS---EPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGEL  174 (410)
T ss_pred             ----c-hHHHHHHHHHhcCC---ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhh
Confidence                1 35678899999888   89999888877765           1123467888889875 889999999999887


Q ss_pred             hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc------------CC-ch-HHHHHHHHh----ChHH
Q 040073          300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF------------SA-TA-RVLQEMLQV----GVVS  361 (407)
Q Consensus       300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~------------~~-~~-~~~~~~~~~----g~i~  361 (407)
                      ..           ...++.|...+.+.++.++..|+..|..+-..            .+ .. .....+...    .+++
T Consensus       175 ~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~  243 (410)
T TIGR02270       175 PR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQA  243 (410)
T ss_pred             cc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHH
Confidence            53           22455566655555677777777766554210            00 00 000111111    3455


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          362 KLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       362 ~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .|..+++.   +.+++.+...|..+..
T Consensus       244 ~L~~ll~d---~~vr~~a~~AlG~lg~  267 (410)
T TIGR02270       244 WLRELLQA---AATRREALRAVGLVGD  267 (410)
T ss_pred             HHHHHhcC---hhhHHHHHHHHHHcCC
Confidence            66666663   3477777777766543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.94  E-value=0.018  Score=48.51  Aligned_cols=120  Identities=10%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             hhHHHHHHHcccCCC---CCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc
Q 040073          227 EFFTEIVNVLRDHHQ---FSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR  301 (407)
Q Consensus       227 g~i~~Lv~lL~~~~~---~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~  301 (407)
                      |++..|++++.++..   ...+...-++.++..|-.+.- .. ..++...|..++..+.... +..+...|+++|..+..
T Consensus        11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl   89 (160)
T PF11841_consen   11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL   89 (160)
T ss_pred             cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence            559999999998710   014677778888888876544 33 3455567788888887653 67899999999999999


Q ss_pred             CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073          302 CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       302 ~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +.......+...--++.|+..|...++..+.+|+..+..|....++
T Consensus        90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            8877666676677889999988888899999999999999988755

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.022  Score=60.50  Aligned_cols=140  Identities=17%  Similarity=0.158  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHhCCC-CchHHHH----HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073          244 QQASKAALKLLVELCPW-GRNRIKA----VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV  318 (407)
Q Consensus       244 ~~~~~~A~~aL~~L~~~-~~n~~~~----v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~  318 (407)
                      .+-.+.++.||.|+... ++-...+    .--|.++.+...|....++.+...|+.++..+..+.+--..+..+ +.+-.
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHH
Confidence            34667889999999884 4322222    223778888888887667789999999999999888877777775 45666


Q ss_pred             HHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          319 VSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       319 Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      |+. |++.-+..++.++.+|+.+++   +.++..++.+.|++.-++.++-...++..|..|+++|..+-.
T Consensus      1818 LL~-lLHS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1818 LLT-LLHSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHH-HHhcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            666 566668999999999999996   456899999999999999988766788889999999876643

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.92  E-value=0.00068  Score=62.83  Aligned_cols=50  Identities=20%  Similarity=0.474  Sum_probs=40.3

Q ss_pred             CCCcccCccccccCcCc---e-ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            6 VPAHFLCPISLQLMRDP---V-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dP---v-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      -...|.||||+..|..-   | +.+|||.|+..+|++--   ....||+|++++...
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccC
Confidence            35679999999999542   2 44899999999999973   256799999999875

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.92  E-value=0.0017  Score=41.28  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=33.6

Q ss_pred             hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC
Q 040073          129 ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN  169 (407)
Q Consensus       129 ~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  169 (407)
                      ++++..+++.|+++.|+++|.+.+.  .++..|+++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~--~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDE--EVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHc
Confidence            4588999999999999999996554  46999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.078  Score=54.68  Aligned_cols=196  Identities=18%  Similarity=0.175  Sum_probs=125.9

Q ss_pred             CcHHHHHHHhhccCC----CCc-hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073          139 GAIEFLATIITKSDA----GSD-ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF  213 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~----~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  213 (407)
                      +++|.|+++|.+.++    ... ....|-..|..++.   ..++-|.. +  ++|.+-+-+++++..-|+.|+.++..+.
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~--Vl~Fiee~i~~pdwr~reaavmAFGSIl  392 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-H--VLPFIEENIQNPDWRNREAAVMAFGSIL  392 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-h--hHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence            678999999976322    111 12223223333332   12233332 3  7888888899999999999999999998


Q ss_pred             ccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-h-HHHHHhcCchHHHHHHhhcccchhHHHH
Q 040073          214 EVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-N-RIKAVEGGGVSVLVDLLLDVTERRVCEL  291 (407)
Q Consensus       214 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n-~~~~v~~G~v~~Lv~lL~~~~~~~~~~~  291 (407)
                      ..++..+..-...+++|.++.++.++   +--++..++|+|..++..-. - -......+.++.+++=|.+  .+.+..+
T Consensus       393 ~gp~~~~Lt~iV~qalp~ii~lm~D~---sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N  467 (859)
T KOG1241|consen  393 EGPEPDKLTPIVIQALPSIINLMSDP---SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASN  467 (859)
T ss_pred             cCCchhhhhHHHhhhhHHHHHHhcCc---hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHH
Confidence            87766544333357899999999977   88888999999999987433 1 1112234566667766666  4789999


Q ss_pred             HHHHHHHHhcCHh--hHHH----HHhccCchHHHHHHHHcCC-------chhhHHHHHHHHHHhccCCc
Q 040073          292 MLNVLDLLCRCAE--GRAE----LLKHGAGLAVVSKKILRVS-------HAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       292 al~~L~~L~~~~~--~r~~----i~~~~g~i~~Lv~~l~~~s-------~~~~e~a~~~L~~l~~~~~~  347 (407)
                      ++|++..|+..-.  .+..    ...  -..+.+|+.|..+.       ...+-.|-.+|..+-+.+++
T Consensus       468 ~CWAf~~Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~  534 (859)
T KOG1241|consen  468 VCWAFISLAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD  534 (859)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence            9999999984221  1111    111  12334444444432       34577778888888887765

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.38  Score=49.59  Aligned_cols=142  Identities=16%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073          228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA  307 (407)
Q Consensus       228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~  307 (407)
                      ++..|-.++.+.   ++..+-.++-|++.+...+.   ..|.+. -..+++.|.+. |..++-+|+..|..+.. .++-.
T Consensus       300 CvqKLr~fieds---DqNLKYlgLlam~KI~ktHp---~~Vqa~-kdlIlrcL~Dk-D~SIRlrALdLl~gmVs-kkNl~  370 (877)
T KOG1059|consen  300 CVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHP---KAVQAH-KDLILRCLDDK-DESIRLRALDLLYGMVS-KKNLM  370 (877)
T ss_pred             HHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCH---HHHHHh-HHHHHHHhccC-CchhHHHHHHHHHHHhh-hhhHH
Confidence            455666677777   89999999999999886443   222221 45677888886 89999999999998876 33444


Q ss_pred             HHHhccCchHHHHHHHHcCCc-hhhHHHHHHHHHHhccCCchHHHHHHHHh-ChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          308 ELLKHGAGLAVVSKKILRVSH-AASDRAVRILCSVCKFSATARVLQEMLQV-GVVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       308 ~i~~~~g~i~~Lv~~l~~~s~-~~~e~a~~~L~~l~~~~~~~~~~~~~~~~-g~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                      +|+.      .|+..+...+. ..+..-+.-+..+|+.+.    -..+.+. =-+..|+++-+-.++.....-|..++..
T Consensus       371 eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~sn----Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv  440 (877)
T KOG1059|consen  371 EIVK------TLMKHVEKAEGTNYRDELLTRIISICSQSN----YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV  440 (877)
T ss_pred             HHHH------HHHHHHHhccchhHHHHHHHHHHHHhhhhh----hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence            4443      45554444332 334444444555565432    2233332 2355666666665666666666666655


Q ss_pred             HHh
Q 040073          386 NAR  388 (407)
Q Consensus       386 l~~  388 (407)
                      .-|
T Consensus       441 ~iR  443 (877)
T KOG1059|consen  441 AIR  443 (877)
T ss_pred             hee
Confidence            444

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.00082  Score=59.33  Aligned_cols=53  Identities=15%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             CcccCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc
Q 040073            8 AHFLCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP   65 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~   65 (407)
                      ..|.||+|.+.+.+-+    .-+|||.|+..|.|+....  ...||+|+.++.++   ++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plkdr---diI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLKDR---DIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCccc---ceEe
Confidence            4689999999988865    4489999999999998753  78999999999886   6654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.00091  Score=61.64  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=42.5

Q ss_pred             CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -|+.=.||+|.+--.+|-++. +|..||..||-++..+  +..||+|+.+..-
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~v  347 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPASV  347 (357)
T ss_pred             CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcchH
Confidence            455569999999999997776 6999999999999985  7899999987643

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.05  Score=54.22  Aligned_cols=227  Identities=12%  Similarity=0.088  Sum_probs=137.1

Q ss_pred             cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C
Q 040073          138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A  216 (407)
Q Consensus       138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~  216 (407)
                      .+.+++++..+.+.+.  .++..|...|+|++....  .+++..-+ .....+.++....+..++ .++..+-.+-.+ .
T Consensus        83 ~~iv~Pv~~cf~D~d~--~vRyyACEsLYNiaKv~k--~~v~~~Fn-~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIV  156 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDS--QVRYYACESLYNIAKVAK--GEVLVYFN-EIFDVLCKLSADSDQNVR-GGAELLDRLIKDIV  156 (675)
T ss_pred             HHhhHHHHHhccCccc--eeeeHhHHHHHHHHHHhc--cCcccchH-HHHHHHHHHhcCCccccc-cHHHHHHHHHHHhc
Confidence            4567888888887665  458899999999875432  22222211 134444444444444444 444444444321 1


Q ss_pred             CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHH
Q 040073          217 DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLN  294 (407)
Q Consensus       217 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~  294 (407)
                      .....-+.-.++||.|-..+..-   ++..+.--..-|+-|-..++-  .++.  -..++.|..+|.+. +++++..+=.
T Consensus       157 te~~~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t  230 (675)
T KOG0212|consen  157 TESASTFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDS-SDEVRTLTDT  230 (675)
T ss_pred             cccccccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCC-cHHHHHHHHH
Confidence            11111222247777777777666   788888888888877665553  2222  24667778888876 6666644443


Q ss_pred             ----HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073          295 ----VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD  370 (407)
Q Consensus       295 ----~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~  370 (407)
                          .|..+...+++-    +....++.++.-+....+..+..|+..+.....-.++.-...   -.|.+..++..+...
T Consensus       231 ~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~---~s~il~~iLpc~s~~  303 (675)
T KOG0212|consen  231 LLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY---LSGILTAILPCLSDT  303 (675)
T ss_pred             HHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh---hhhhhhhcccCCCCC
Confidence                444555555432    223456777776665568889999999998888766542222   368888888888755


Q ss_pred             CCHHHHHHHHHHH
Q 040073          371 ASVKTKERAREIL  383 (407)
Q Consensus       371 ~~~~~k~~A~~lL  383 (407)
                      .....++.|+.+-
T Consensus       304 e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  304 EEMSIKEYAQMVN  316 (675)
T ss_pred             ccccHHHHHHHHH
Confidence            4445777776644

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.094  Score=53.31  Aligned_cols=179  Identities=16%  Similarity=0.101  Sum_probs=112.5

Q ss_pred             HHHHHHhhccCCCCchHHHHHHHH---HhcCC--Ch-h-HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073          142 EFLATIITKSDAGSDECDEALSIL---YHLNV--SE-S-YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE  214 (407)
Q Consensus       142 ~~Lv~lL~~~~~~~~~~~~a~~~L---~~L~~--~~-~-~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~  214 (407)
                      ...++.|.+++.  .++..|+.++   .|..-  .+ + +.++...    .++..+...+...+..+|..|+.+|+.+-.
T Consensus       237 ~~A~~~lsD~~e--~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D----~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~  310 (823)
T KOG2259|consen  237 SRAVKHLSDDYE--DVRKAAVQLVSVWGNRCPAPLERESEEEKLKD----AAFSSVCRAVRDRSLSVRVEAAKALGEFEQ  310 (823)
T ss_pred             HHHHHHhcchHH--HHHHHHHHHHHHHHhcCCCcccchhhhhhhHH----HHHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence            445666766655  4577775544   44441  11 1 1233332    267788888888888888888888876643


Q ss_pred             cCCc-------hhhhh-------------------------------------------chhhhHHHHHHHcccCCCCCH
Q 040073          215 VADP-------FQLIS-------------------------------------------VKQEFFTEIVNVLRDHHQFSQ  244 (407)
Q Consensus       215 ~~~~-------~~~i~-------------------------------------------~~~g~i~~Lv~lL~~~~~~~~  244 (407)
                      ..+.       ++.+.                                           ...|+..++|.=|.++   -.
T Consensus       311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE---f~  387 (823)
T KOG2259|consen  311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE---FY  387 (823)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH---HH
Confidence            3221       00000                                           0123334455555554   56


Q ss_pred             HHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073          245 QASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL  324 (407)
Q Consensus       245 ~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~  324 (407)
                      +++++|...++.|+.+.+.-   .. .++..|+.++.+. ...++..|..+|..++.+-.-+    +  ..++.+.+.|.
T Consensus       388 EVR~AAV~Sl~~La~ssP~F---A~-~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l~i~----e--eql~~il~~L~  456 (823)
T KOG2259|consen  388 EVRRAAVASLCSLATSSPGF---AV-RALDFLVDMFNDE-IEVVRLKAIFALTMISVHLAIR----E--EQLRQILESLE  456 (823)
T ss_pred             HHHHHHHHHHHHHHcCCCCc---HH-HHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHheec----H--HHHHHHHHHHH
Confidence            89999999999999854431   11 2588999999886 7889999999999998863322    2  23566777777


Q ss_pred             cCCchhhHHHHHHHHH
Q 040073          325 RVSHAASDRAVRILCS  340 (407)
Q Consensus       325 ~~s~~~~e~a~~~L~~  340 (407)
                      +.+.+.++..-..|.+
T Consensus       457 D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  457 DRSVDVREALRELLKN  472 (823)
T ss_pred             hcCHHHHHHHHHHHHh
Confidence            7777777766555544

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.23  Score=51.42  Aligned_cols=275  Identities=13%  Similarity=0.116  Sum_probs=161.4

Q ss_pred             hhHHHHHHHhcCCC--hHHHHHHHHHHHHhhh-ChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC---
Q 040073           98 TQIVKILNDAKKSP--STGRKCLRRLRSITLQ-SERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNV---  170 (407)
Q Consensus        98 ~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~-~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~---  170 (407)
                      +-+..+++......  -.+..++++|..++.+ +++  ..... +.++-.++.=......+..++-.|+.+|.+--.   
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~  206 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK  206 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence            34455555554433  4678899999999987 343  22223 345556666665555555679999999987211   


Q ss_pred             ---ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHH
Q 040073          171 ---SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQA  246 (407)
Q Consensus       171 ---~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  246 (407)
                         .++..+.+       .+....+.-++++.+++..|..+|-.|... .+.....+.. ..+..-+.-+++.   ++++
T Consensus       207 ~nF~~E~ern~-------iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~---~deV  275 (859)
T KOG1241|consen  207 ANFNNEMERNY-------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSD---NDEV  275 (859)
T ss_pred             HhhccHhhhce-------eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC---cHHH
Confidence               11111121       344455666777888888888888877543 2333333332 2334444555555   6666


Q ss_pred             HHHHHHHHHHhCCCCc------------h----HHHHHh---cCchHHHHHHhhcc------------------------
Q 040073          247 SKAALKLLVELCPWGR------------N----RIKAVE---GGGVSVLVDLLLDV------------------------  283 (407)
Q Consensus       247 ~~~A~~aL~~L~~~~~------------n----~~~~v~---~G~v~~Lv~lL~~~------------------------  283 (407)
                      .-.|...=.++|.-+-            +    ...+.+   .+.+|.|+++|...                        
T Consensus       276 alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~  355 (859)
T KOG1241|consen  276 ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ  355 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH
Confidence            6666655554443100            0    011111   14566677766541                        


Q ss_pred             --------------------cchhHHHHHHHHHHHHhcCHh--hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073          284 --------------------TERRVCELMLNVLDLLCRCAE--GRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV  341 (407)
Q Consensus       284 --------------------~~~~~~~~al~~L~~L~~~~~--~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l  341 (407)
                                          ++-.-++.++.++..+-..++  -...++  .+++|.++.+|.+.+-.+++.+...|..+
T Consensus       356 ~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI  433 (859)
T KOG1241|consen  356 CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRI  433 (859)
T ss_pred             HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence                                011223333344443333332  122233  35799999988866677788899999999


Q ss_pred             hccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          342 CKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       342 ~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      +.+.++ ....+..-.+.++.|+.-|+.  .|+.-.++.+.+-.|.++.
T Consensus       434 ~d~l~e-~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  434 ADFLPE-AIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             Hhhchh-hcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHH
Confidence            987654 244455556788888888873  6999999999999998753

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.61  E-value=0.11  Score=43.98  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             HhHhhccchhhHHHHHHHHhcCCh------hHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNY------QSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKA  249 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~------~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~  249 (407)
                      .+++...|   +..|++++.++..      +....+..++.+|..+.-..+.... ..+|...+..+... ..+..+.+.
T Consensus         5 ~EFI~~~G---l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~-~~d~~i~q~   79 (160)
T PF11841_consen    5 QEFISRDG---LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSS-AMDASILQR   79 (160)
T ss_pred             HHHHhccC---HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccc-cccchHHHH
Confidence            35666543   9999999998763      6667788888899887766676655 46899999998754 136889999


Q ss_pred             HHHHHHHhCCCCchHHHHHhc-CchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          250 ALKLLVELCPWGRNRIKAVEG-GGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       250 A~~aL~~L~~~~~n~~~~v~~-G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      |+..|-++..+.+.....|+. =-++.|+..|... +.+++.++++.+-.|-.
T Consensus        80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHh
Confidence            999999999988776666664 4788999999986 88999999999988765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.60  E-value=0.56  Score=47.24  Aligned_cols=224  Identities=18%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch----------
Q 040073          156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK----------  225 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~----------  225 (407)
                      .+.-+++.++..++..+- .-+.+. .   ++..|-.+|++.....|=.|.++|..|+...+.+...+..          
T Consensus       279 mV~lE~Ar~v~~~~~~nv-~~~~~~-~---~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~N  353 (898)
T COG5240         279 MVFLEAARAVCALSEENV-GSQFVD-Q---TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDEN  353 (898)
T ss_pred             hhhHHHHHHHHHHHHhcc-CHHHHH-H---HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhccc
Confidence            357777777777664331 123332 1   5778888888889999999999999998765443322211          


Q ss_pred             ----------------hhhHHHHHHHccc---CCCCCHHHHHHHHHHHHHhCCCCc-hHHH--------HHhcCc-----
Q 040073          226 ----------------QEFFTEIVNVLRD---HHQFSQQASKAALKLLVELCPWGR-NRIK--------AVEGGG-----  272 (407)
Q Consensus       226 ----------------~g~i~~Lv~lL~~---~~~~~~~~~~~A~~aL~~L~~~~~-n~~~--------~v~~G~-----  272 (407)
                                      ..-|..|++++-+   +  .++..+..+..|++.||..-+ -+..        +.++|+     
T Consensus       354 r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD--~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~  431 (898)
T COG5240         354 RTISTYAITTLLKTGTEETIDRLVNLIPSFVHD--MSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKK  431 (898)
T ss_pred             ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHh--hccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHH
Confidence                            0123333332211   1  144555666777888877433 2222        223443     


Q ss_pred             --hHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc--------------CchHHHHHHHHcCCchhhHHHHH
Q 040073          273 --VSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG--------------AGLAVVSKKILRVSHAASDRAVR  336 (407)
Q Consensus       273 --v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~--------------g~i~~Lv~~l~~~s~~~~e~a~~  336 (407)
                        |.++..++..  .++.+|.|+..|...-..-+.-+-.++.-              ..|..+...+.=.+.-.+..|+.
T Consensus       432 ~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~  509 (898)
T COG5240         432 YMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQ  509 (898)
T ss_pred             HHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHH
Confidence              3344444433  45677777776665544222221111100              01111111111112334555666


Q ss_pred             HHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 040073          337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVP  397 (407)
Q Consensus       337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~~~~  397 (407)
                      +|...+....+. +..+    -....|-+.+. +.++++|.+|+-+|+.++-   ..-|+|
T Consensus       510 aLskf~ln~~d~-~~~~----sv~~~lkRcln-D~DdeVRdrAsf~l~~~~~---~da~~p  561 (898)
T COG5240         510 ALSKFALNISDV-VSPQ----SVENALKRCLN-DQDDEVRDRASFLLRNMRL---SDACEP  561 (898)
T ss_pred             HHHHhccCcccc-ccHH----HHHHHHHHHhh-cccHHHHHHHHHHHHhhhh---hhhhhc
Confidence            665555433321 2222    22233444555 6689999999999999874   444555

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.59  E-value=0.32  Score=49.21  Aligned_cols=255  Identities=13%  Similarity=0.111  Sum_probs=153.6

Q ss_pred             HhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh-cCCChhHHHhHhhccc
Q 040073          106 DAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH-LNVSESYLKSIVINNG  183 (407)
Q Consensus       106 ~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~-L~~~~~~~~~~i~~~g  183 (407)
                      .+.... ..+..+...+..+.+.  -.-..+.+.+.+..|...+.+..... -++ +...-.+ .+.+   .. ...+ .
T Consensus       142 ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~-~re-~~~~a~~~~~~~---Lg-~~~E-P  212 (569)
T KOG1242|consen  142 LLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSAL-NRE-AALLAFEAAQGN---LG-PPFE-P  212 (569)
T ss_pred             HhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhh-cHH-HHHHHHHHHHHh---cC-CCCC-c
Confidence            334444 6677777777777654  23455666777888877777655422 133 2221111 1100   00 0111 2


Q ss_pred             hhhHHHHHHHHh---cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          184 EEFLESLMRVLK---CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       184 g~~i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                      + .++.+..+|.   +....+|+.|..+...+...-..   .+.. -+++.++.-+...   ....+.+++..|..++..
T Consensus       213 y-iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK-~llpsll~~l~~~---kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  213 Y-IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YAVK-LLLPSLLGSLLEA---KWRTKMASLELLGAMADC  284 (569)
T ss_pred             h-HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---chhh-HhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHh
Confidence            1 5555555554   45778888888888776532111   1111 2455565555444   567788888888888877


Q ss_pred             CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073          261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS  340 (407)
Q Consensus       261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~  340 (407)
                      .+..-...-..+||.|.+.|-+. .+++++.+..+|..++..-++.. |..   .+|.|++-+.+.+. ....++..|..
T Consensus       285 ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~dp~~-~~~e~~~~L~~  358 (569)
T KOG1242|consen  285 APKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALADPSC-YTPECLDSLGA  358 (569)
T ss_pred             chHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhcCccc-chHHHHHhhcc
Confidence            77777777778999999999886 89999999999999988666554 322   46777776654322 33344444433


Q ss_pred             HhccCCchHHHHHHHHhChHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhcc
Q 040073          341 VCKFSATARVLQEMLQVGVVSKLCLVLQVD---ASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       341 l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~---~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      -.-        ..-+.+-.+..++.+|+.+   -+..++++++.+..++.+.+.
T Consensus       359 ttF--------V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve  404 (569)
T KOG1242|consen  359 TTF--------VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE  404 (569)
T ss_pred             eee--------eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence            221        1112223444444444432   377888999999999988763

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.59  E-value=0.004  Score=42.71  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          199 YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       199 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      +.+|..|+++|.+++........-.. ..+++.|+.+|+++   +++++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~---~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD---DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS---SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC---CHHHHHHHHHHHhcC
Confidence            35789999999998755443333333 46899999999988   889999999999875

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.064  Score=57.14  Aligned_cols=200  Identities=14%  Similarity=0.121  Sum_probs=142.7

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~  264 (407)
                      ..|-++++|++...+.|.--+-+=..+...+.+++.-..+.++-...++.|..+.+.+++-+..|+-.|..++.+ ..++
T Consensus       513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ  592 (1387)
T KOG1517|consen  513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ  592 (1387)
T ss_pred             hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence            899999999999999998888888888777788876655555567778888764335678888889999999885 5588


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                      +...+.+.+..=++.|.++..+-++.-++-.|..|=.+ ++.|..=++ .++...|+..|.+..++++..|+-+|..+-.
T Consensus       593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            88889998888888887743456667777777777553 444443334 4677888887777779999999999998887


Q ss_pred             cC----Cc-hHHH-------------HHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          344 FS----AT-ARVL-------------QEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       344 ~~----~~-~~~~-------------~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ..    .+ ...+             +.++..| ...|+.+++ ++++-.+..-+..|.-+..
T Consensus       672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~-~~~ll~~vs-dgsplvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKG-LMSLLALVS-DGSPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             ccccccchhhhhhhhhhcchhhhhhHHHHHHhh-HHHHHHHHh-ccchHHHHHHHHHHHHHHH
Confidence            52    11 1111             1122222 235666665 6788888887777766654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.096  Score=52.06  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCChh--HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073          158 CDEALSILYHLNVSES--YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~~--~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l  235 (407)
                      ..-+++++...+.+..  -.+.-+..+.  +.++|+++|++++..+.--+...+.++.-.-++-+.-+...|+|..|+++
T Consensus       404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~--I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~  481 (743)
T COG5369         404 LDFVAIVLFLKSMSRSVTFLRTGLLDYP--IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccccc--hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence            4555666665555432  2233344454  88999999988766666677777888765555555555557999999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPWGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-  312 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-  312 (407)
                      +.++   ++..+++..|.|+.+.-+.++  +.++...-++..+++...+. .-.+++.++.+|.|+..+..--.+..+- 
T Consensus       482 v~sK---DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~  557 (743)
T COG5369         482 VMSK---DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVF  557 (743)
T ss_pred             hhcc---hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeE
Confidence            9988   889999999999999886553  44555555689999988775 6788999999999998733210111110 


Q ss_pred             cCch------HHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH
Q 040073          313 GAGL------AVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ  356 (407)
Q Consensus       313 ~g~i------~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~  356 (407)
                      -...      ..|++.+...++-..+..+-+|.+++..+.+  ....+++
T Consensus       558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~--l~~~V~~  605 (743)
T COG5369         558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDT--LDYIVQS  605 (743)
T ss_pred             EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccch--HHHHHHh
Confidence            0111      2344444445666677778888888875544  4444443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.54  E-value=0.00085  Score=64.38  Aligned_cols=42  Identities=21%  Similarity=0.549  Sum_probs=36.1

Q ss_pred             cCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073           11 LCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus        11 ~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      +||+|++=|.+-|    ++.|.|+|--+|+.+||.    .+||+|+...+
T Consensus       177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~  222 (493)
T KOG0804|consen  177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS  222 (493)
T ss_pred             CcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence            8999999999887    567999999999999984    47999986543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0016  Score=61.82  Aligned_cols=41  Identities=22%  Similarity=0.494  Sum_probs=36.2

Q ss_pred             ccCccccccCcC---ceecCCcccccHHHHHHHHhcCCC--CCCccc
Q 040073           10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKN--NTCPVT   51 (407)
Q Consensus        10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~--~~cP~~   51 (407)
                      |.|||..+--.|   |+.+.|||..+|.+|.+-..+ |.  +.||.|
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYC  380 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYC  380 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCC
Confidence            699998887766   999999999999999998765 46  889999

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.51  E-value=0.005  Score=42.23  Aligned_cols=55  Identities=20%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073          244 QQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL  299 (407)
Q Consensus       244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  299 (407)
                      +.++..|+++|.+++........-....+++.|+.+|.+. +..++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            4688999999999887666555555567899999999886 679999999999865

...

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.64  Score=48.53  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=71.4

Q ss_pred             HHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccc
Q 040073          105 NDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNG  183 (407)
Q Consensus       105 ~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g  183 (407)
                      +.|.+++ -++.-|+..|.+++.. +-.|+.      .|-+.++|.+.++  .++..|+.++..+-...++..+.     
T Consensus       114 nDL~s~nq~vVglAL~alg~i~s~-Emardl------apeVe~Ll~~~~~--~irKKA~Lca~r~irK~P~l~e~-----  179 (866)
T KOG1062|consen  114 NDLNSSNQYVVGLALCALGNICSP-EMARDL------APEVERLLQHRDP--YIRKKAALCAVRFIRKVPDLVEH-----  179 (866)
T ss_pred             hhccCCCeeehHHHHHHhhccCCH-HHhHHh------hHHHHHHHhCCCH--HHHHHHHHHHHHHHHcCchHHHH-----
Confidence            3445666 6667788888887653 222322      3556677776554  34666655444433222222221     


Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc----C--------CCCCHHHHHHHH
Q 040073          184 EEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD----H--------HQFSQQASKAAL  251 (407)
Q Consensus       184 g~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----~--------~~~~~~~~~~A~  251 (407)
                        +++....+|.+.+..+.......+..++........-..  ..++.||..|++    +        +-.+|-.+-..+
T Consensus       180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr--~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL  255 (866)
T KOG1062|consen  180 --FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR--DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL  255 (866)
T ss_pred             --hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence              344455566655666666666666666554332222222  244445555442    0        002455666666


Q ss_pred             HHHHHhCCCCc
Q 040073          252 KLLVELCPWGR  262 (407)
Q Consensus       252 ~aL~~L~~~~~  262 (407)
                      +.|+-|-.++.
T Consensus       256 rlLriLGq~d~  266 (866)
T KOG1062|consen  256 RLLRILGQNDA  266 (866)
T ss_pred             HHHHHhcCCCc
Confidence            66666655544

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.39  E-value=0.072  Score=54.81  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh--hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ--LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN  263 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n  263 (407)
                      .+..+.+.|++.+..+|++|+.++..|+..-..+.  ..+..-|  -.|.+.|...   ++++.-..+.||+.+.....-
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee---ypEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE---YPEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc---cHHHHHHHHHHHHHHHHhccc
Confidence            45567788999999999999999999875433332  2222234  2367788777   898888888888777653321


Q ss_pred             -HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh----HHHHHhccCchHHHHHHHHcCCchhhHHHHHHH
Q 040073          264 -RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG----RAELLKHGAGLAVVSKKILRVSHAASDRAVRIL  338 (407)
Q Consensus       264 -~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~----r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L  338 (407)
                       +..-=-.|.+|.|.-.|++. ...+++++...+..+|.....    |.=+.-+    --|+.+|...+...+..|+..+
T Consensus       875 ~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             cccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence             11101136789999999887 789999999999999874422    1111111    2356656556666677777666


Q ss_pred             HHHhc
Q 040073          339 CSVCK  343 (407)
Q Consensus       339 ~~l~~  343 (407)
                      ..+++
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            66654

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.002  Score=57.69  Aligned_cols=55  Identities=22%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             cccCccccccCcCce----------ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            9 HFLCPISLQLMRDPV----------TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv----------~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      +=.|.+|++-+.+-|          +++|+|+|---||.-|..-+...+||.|++..+-.   .+..|
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~---rmfsn  288 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK---RMFSN  288 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh---hhccC
Confidence            357999998777766          88999999999999999876578999999876542   44455

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.30  E-value=0.0034  Score=42.18  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=26.3

Q ss_pred             cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCcccccc
Q 040073            9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQV   54 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~   54 (407)
                      .+.|||+...|+-||-. .|-|.  ||-...-+...+.+...||+|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            47899999999999966 58876  777555554444446789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.29  E-value=0.78  Score=44.07  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=105.3

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ..+..+++.+.+.+ ..+..+...+..+...           -+++.|..+|.+.+.  .++..|+.+|..+-       
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~--~vr~~a~~aLg~~~-------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDP--RVRDAAADALGELG-------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCH--HHHHHHHHHHHccC-------
Confidence            34566777777765 7777777775555332           147888899987766  45777777554422       


Q ss_pred             hHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH----------
Q 040073          177 SIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ----------  245 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~----------  245 (407)
                          ..  ..++.|+.+|+ +.+..+|..++.+|..+-..           ..+.+|+..+++.   ...          
T Consensus       103 ----~~--~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~---~~~~a~~~~~~~~  162 (335)
T COG1413         103 ----DP--EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDE---DSGSAAAALDAAL  162 (335)
T ss_pred             ----Ch--hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccc---hhhhhhhhccchH
Confidence                11  26889999998 48999999999999998421           2378888888876   322          


Q ss_pred             --HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          246 --ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       246 --~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                        .+..++.+|..+          .+.-+++.+...+.+. ...++..|..+|..+....
T Consensus       163 ~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         163 LDVRAAAAEALGEL----------GDPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHHHHHHHHHc----------CChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch
Confidence              233333333322          2234678888888886 6788899999999887754

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.24  E-value=0.0052  Score=41.12  Aligned_cols=42  Identities=26%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             cCccccc--cCcCceecCCc-----ccccHHHHHHHHhcCCCCCCcccc
Q 040073           11 LCPISLQ--LMRDPVTVSTG-----ITYDRVNIERWLFTCKNNTCPVTK   52 (407)
Q Consensus        11 ~Cpi~~~--~~~dPv~~~~g-----~t~~r~~i~~~~~~~~~~~cP~~~   52 (407)
                      .|-||.+  --.+|.+.||.     |-|=+.|+++|+...++.+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3788885  55778888874     678899999999876677899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.22  E-value=0.12  Score=47.15  Aligned_cols=153  Identities=15%  Similarity=0.164  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCC---chHHHHHHHHHhcCCCh-hHHHhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGS---DECDEALSILYHLNVSE-SYLKSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~---~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i  187 (407)
                      ...+.|+.-|..+|.+ ++.|..+.++...--|--+|...+.+.   -.+-..+++++.|...+ .+...++...+  .+
T Consensus        65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE--ii  141 (262)
T PF04078_consen   65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTE--II  141 (262)
T ss_dssp             HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTT--HH
T ss_pred             HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhc--hH
Confidence            3346788888888886 899999999998877888887665532   24677888898887754 33456666655  99


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVNVLRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                      |...+.++.|+.-.|..|+-++..+..++..-..+.....       ++..+|.-+...  .++...+...++-..|+.+
T Consensus       142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~--pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ--PSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC--CChhHHHHHHHHHHHHccC
Confidence            9999999999999999999999998877765555544322       333344333333  3899999999999999999


Q ss_pred             CchHHHHHh
Q 040073          261 GRNRIKAVE  269 (407)
Q Consensus       261 ~~n~~~~v~  269 (407)
                      +..+..+..
T Consensus       220 prar~aL~~  228 (262)
T PF04078_consen  220 PRAREALRQ  228 (262)
T ss_dssp             TTHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887765

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=1.4  Score=45.50  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc
Q 040073          103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN  181 (407)
Q Consensus       103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~  181 (407)
                      +-..|.+.+ -...-|+.++.++-.  .++++.+..     -+-++|.+++....++..|+-.|..|-...+   +++. 
T Consensus       116 iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~~~~vkqkaALclL~L~r~sp---Dl~~-  184 (938)
T KOG1077|consen  116 IKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSSMDYVKQKAALCLLRLFRKSP---DLVN-  184 (938)
T ss_pred             HHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcchHHHHHHHHHHHHHHHhcCc---cccC-
Confidence            334555666 556678888888743  344544432     2236777766543344444333333333332   3333 


Q ss_pred             cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073          182 NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       182 ~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      .| .-...++.+|......+...++..+..|+...+
T Consensus       185 ~~-~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  185 PG-EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             hh-hHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence            23 378899999988777788888888888876544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.06  E-value=0.66  Score=44.56  Aligned_cols=155  Identities=17%  Similarity=0.101  Sum_probs=102.8

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      -.++.+++++.+.+.  .++..|...+..+           ...  .+++.+..+|...+..+|..|+.+|..+-     
T Consensus        43 ~~~~~~~~~l~~~~~--~vr~~aa~~l~~~-----------~~~--~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----  102 (335)
T COG1413          43 EAADELLKLLEDEDL--LVRLSAAVALGEL-----------GSE--EAVPLLRELLSDEDPRVRDAAADALGELG-----  102 (335)
T ss_pred             hhHHHHHHHHcCCCH--HHHHHHHHHHhhh-----------chH--HHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Confidence            357788888887743  3466666653321           111  26889999999999999999999776652     


Q ss_pred             hhhhhchhhhHHHHHHHccc-CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchh----------
Q 040073          219 FQLISVKQEFFTEIVNVLRD-HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR----------  287 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~----------  287 (407)
                           . ...++.|+.++.+ .   +..++..++.+|..+-.          ..++.+|+..+.+. ...          
T Consensus       103 -----~-~~a~~~li~~l~~d~---~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~-~~~~a~~~~~~~~  162 (335)
T COG1413         103 -----D-PEAVPPLVELLENDE---NEGVRAAAARALGKLGD----------ERALDPLLEALQDE-DSGSAAAALDAAL  162 (335)
T ss_pred             -----C-hhHHHHHHHHHHcCC---cHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccc-hhhhhhhhccchH
Confidence                 1 2358999999985 5   89999999999998743          12377888888774 211          


Q ss_pred             --HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          288 --VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       288 --~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                        ++..+...|..+           .+...++.+...+.......+..|..+|..+...
T Consensus       163 ~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         163 LDVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             HHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence              122222222211           1234567777766666677888888888877754

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.05  E-value=0.24  Score=48.65  Aligned_cols=152  Identities=16%  Similarity=0.225  Sum_probs=106.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCC----chhhhhchhhhHHHHHHHcccCCC----CCHHHHHHHHHHHHHhCC
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVAD----PFQLISVKQEFFTEIVNVLRDHHQ----FSQQASKAALKLLVELCP  259 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~~~~A~~aL~~L~~  259 (407)
                      ..+..+++..+.+-|-.|.-.+..+...++    +++.++...| .+.|=++|..++.    ++.--+..+...|.-.|+
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            345566666666666667667777776554    4556777666 6888888875421    234566677788888898


Q ss_pred             CCc--hHHHHHhcCchHHHHHHhhcccchh------HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chh
Q 040073          260 WGR--NRIKAVEGGGVSVLVDLLLDVTERR------VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAA  330 (407)
Q Consensus       260 ~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~------~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~  330 (407)
                      .++  ....+++  .||.|.+.+..+.+++      +.+.+-..|..++.++.|.+.++. .||++.+-++-.-.+ ...
T Consensus        93 ~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   93 VPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             ChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchh
Confidence            776  5566666  4999999998764444      789999999999999999999988 689999887433322 445


Q ss_pred             hHHHHHHHHHHhc
Q 040073          331 SDRAVRILCSVCK  343 (407)
Q Consensus       331 ~e~a~~~L~~l~~  343 (407)
                      .+.|+.++.....
T Consensus       170 ~alal~Vlll~~~  182 (698)
T KOG2611|consen  170 MALALKVLLLLVS  182 (698)
T ss_pred             HHHHHHHHHHHHH
Confidence            5666666655443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=1.5  Score=41.36  Aligned_cols=272  Identities=13%  Similarity=0.088  Sum_probs=164.9

Q ss_pred             HhcCCC-hHHHHHHHHHHHHhhhChhH----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073          106 DAKKSP-STGRKCLRRLRSITLQSERN----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI  180 (407)
Q Consensus       106 ~L~~~~-~~~~~al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~  180 (407)
                      -|..++ .++.-+++.+..+..+++.|    ...++.+|..+.++..+...++  .+...|...|..++........++-
T Consensus        90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--eVAkAAiesikrialfpaaleaiFe  167 (524)
T KOG4413|consen   90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--EVAKAAIESIKRIALFPAALEAIFE  167 (524)
T ss_pred             cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcHHHHHHhcc
Confidence            344444 66666777777777776543    2344578999999999987776  4577788888888877654434333


Q ss_pred             ccchhhHH--HHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          181 NNGEEFLE--SLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       181 ~~gg~~i~--~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      .+   ...  .+..+-..-+.-.|......+-.+.+.......-+...|.+..|..=|+..  .+.-++.+.+...+.|+
T Consensus       168 Se---llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt--eDtLVianciElvteLa  242 (524)
T KOG4413|consen  168 SE---LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT--EDTLVIANCIELVTELA  242 (524)
T ss_pred             cc---cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC--cceeehhhHHHHHHHHH
Confidence            22   222  334444445666777777787777766554444455568777777666542  16677888888889999


Q ss_pred             CCCchHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhcCHh----hHHHHHhc-cCchHHHHHHHHcCCchhhH
Q 040073          259 PWGRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRCAE----GRAELLKH-GAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~~~----~r~~i~~~-~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      -.+-++.-+.+.|.|..+...+...+ ++--+-.++.....+-....    .-+++++. .-.|.....++-..++...+
T Consensus       243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie  322 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE  322 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence            88888888899999998888886542 33333345544444433211    11122220 01222333434445688999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhC--hHHHHHHHHhcCCCHHHH-HHHHHHHHHHHh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVG--VVSKLCLVLQVDASVKTK-ERAREILKLNAR  388 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~k-~~A~~lL~~l~~  388 (407)
                      .|+.++..+.+....   ...+.+.|  +.++|+.-.... +...+ +.|-..|..++.
T Consensus       323 aAiDalGilGSnteG---adlllkTgppaaehllarafdq-nahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  323 AAIDALGILGSNTEG---ADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHhccCCcch---hHHHhccCChHHHHHHHHHhcc-cccchHHHHHHHHHHhhc
Confidence            999999998875443   34444554  456665544322 33333 334445555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0039  Score=59.24  Aligned_cols=58  Identities=24%  Similarity=0.454  Sum_probs=43.6

Q ss_pred             ccCccccccCcCce-----ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHH
Q 040073           10 FLCPISLQLMRDPV-----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLR   70 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv-----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~   70 (407)
                      -+||||++-..-|+     ++.|||-|--+||++|+.+.-...||.|.-.-...   ++.+-.++|
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr---~i~~e~alR   67 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR---QIRPEYALR   67 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH---HHHHHHHHH
Confidence            58999999888885     67899999999999999643236799997654332   565544443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.81  E-value=1.2  Score=41.89  Aligned_cols=223  Identities=13%  Similarity=0.093  Sum_probs=143.1

Q ss_pred             HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073          158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l  235 (407)
                      +--|+..+.++....+...-...++.  .-..++.++++  |..+.+-+..-++.-++...+..+.+-..-..|.-|+.+
T Consensus       166 rlfav~cl~~l~~~~e~R~i~waent--cs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i  243 (432)
T COG5231         166 RLFAVSCLSNLEFDVEKRKIEWAENT--CSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI  243 (432)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhh--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            66677888888877765444444442  56788888887  678888899999999987666554444444578888888


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhccc--chhHHHHH---HHHHH----HHhcCHh
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVT--ERRVCELM---LNVLD----LLCRCAE  304 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~--~~~~~~~a---l~~L~----~L~~~~~  304 (407)
                      .+..  ....+.+-.+..+.|++..  ......+.-.|-+..-+++|..+.  +++++...   -..|.    .|+..+.
T Consensus       244 Vk~~--~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         244 VKER--AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            8865  3567888889999999872  245666677776777777776642  33332211   11111    1221111


Q ss_pred             ------------------------hHHHHHhc-cCchHHHHHHHHcCCch-hhHHHHHHHHHHhccCCchHHHHHHHHhC
Q 040073          305 ------------------------GRAELLKH-GAGLAVVSKKILRVSHA-ASDRAVRILCSVCKFSATARVLQEMLQVG  358 (407)
Q Consensus       305 ------------------------~r~~i~~~-~g~i~~Lv~~l~~~s~~-~~e~a~~~L~~l~~~~~~~~~~~~~~~~g  358 (407)
                                              +-..+..+ ...+..|.+.+....+. .-..|+.=+..+....++  ...-+.+.|
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE--~~~vl~Kyg  399 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE--INAVLSKYG  399 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--HHHHHHHhh
Confidence                                    11222221 12345555554443333 344566666666665554  566677789


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          359 VVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       359 ~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      +=+.++.++. +.++++|-.|-..++.+-
T Consensus       400 ~k~~im~L~n-h~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLIN-HDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhc-CCCchhhHHHHHHHHHHH
Confidence            9999999998 558999999999888764

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.0065  Score=54.03  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=40.2

Q ss_pred             CcccCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccccC
Q 040073            8 AHFLCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETD   59 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~   59 (407)
                      ..|.|||++-.|.+-.    .-+|||.|.-+++++.-    ..+||+|++.+..++
T Consensus       110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~d  161 (293)
T KOG3113|consen  110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDD  161 (293)
T ss_pred             ceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccC
Confidence            4599999999998875    55899999999988854    558999999998754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.74  E-value=1.9  Score=41.04  Aligned_cols=197  Identities=16%  Similarity=0.164  Sum_probs=110.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC---Cc
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW---GR  262 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~---~~  262 (407)
                      +.-.+..|...+...|+.+...|..+....-....+.. ..-++..+.+.++.+   +.+-+..|++++.-|+..   ..
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg---~~~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG---KSEEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHhhhcCCCc
Confidence            44455666667889999999999987654432222222 223677777888887   556666777777766654   24


Q ss_pred             hHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc---CH-hhHHHHHhccCchHHHHHHHHc-CC---------
Q 040073          263 NRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR---CA-EGRAELLKHGAGLAVVSKKILR-VS---------  327 (407)
Q Consensus       263 n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~---~~-~~r~~i~~~~g~i~~Lv~~l~~-~s---------  327 (407)
                      ....+.+ ...|.|...+.++. +..++..++.+|..++-   .+ +.-....+.-.+|-.+.. +.. +.         
T Consensus       122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~-~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI-LKSDGNAPVVAAEDD  199 (309)
T ss_pred             cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh-cCcCCCcccccCCCc
Confidence            4555555 36888999988763 23444555555555433   22 112211121111111111 111 11         


Q ss_pred             chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      +...-.|+..-..|...-+...+. ... ...++.|..+|+++ +..+|-.|.+.|.+|-+..+
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence            123333333333333322332222 222 34699999999965 89999999999998876543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.73  E-value=1.3  Score=45.97  Aligned_cols=150  Identities=13%  Similarity=0.088  Sum_probs=102.1

Q ss_pred             HHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH---HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073          231 EIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR---IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA  307 (407)
Q Consensus       231 ~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~---~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~  307 (407)
                      .....|+++   ++.++..|+..+..|+..-.++   +.+...|.  .|.+-|... ++++.-..+++|..+...-.--.
T Consensus       803 tiL~rLnnk---sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  803 TILWRLNNK---SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccccc
Confidence            334556777   8999999999998887633322   23334553  367777775 88988888888888876321111


Q ss_pred             HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      ..--..+.+|.|.-.|.+...+.+++++..+..+|...++..-..+=.+  .---|+++|.++ ....|++|...+..++
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah-kK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH-KKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH-HHHHHHHHHhhhhHHH
Confidence            1111135678888866666789999999999999998776322233222  233567888876 7889999999988888


Q ss_pred             hh
Q 040073          388 RA  389 (407)
Q Consensus       388 ~~  389 (407)
                      +.
T Consensus       954 ka  955 (1172)
T KOG0213|consen  954 KA  955 (1172)
T ss_pred             Hh
Confidence            75

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.69  E-value=1.6  Score=39.54  Aligned_cols=207  Identities=12%  Similarity=0.046  Sum_probs=130.9

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccC-----------CCCchHHHHHHH
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSD-----------AGSDECDEALSI  164 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~-----------~~~~~~~~a~~~  164 (407)
                      .+.+..++-.+.++ +.+..|+.+|...-+..+.....+-. -|.+..|++-.-+..           .+. -..+|+.+
T Consensus        25 ~dk~~~~i~~l~~~-p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsn-RVcnaL~L  102 (293)
T KOG3036|consen   25 NDKAYQLILSLVSP-PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSN-RVCNALAL  102 (293)
T ss_pred             ccchhhHHHHhhCC-chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccc-hHHHHHHH
Confidence            44466666666666 66777777777665544444443333 455555544332221           121 27788888


Q ss_pred             HHhcCCChhHHHhHhhccchhhHHHHH-HHHhc-----CChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcc
Q 040073          165 LYHLNVSESYLKSIVINNGEEFLESLM-RVLKC-----GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLR  237 (407)
Q Consensus       165 L~~L~~~~~~~~~~i~~~gg~~i~~Lv-~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~  237 (407)
                      |.-++.+.+..+.++ .+.   ||..+ ..|..     .....|..+..+|..|...++.- .......++||..++.+.
T Consensus       103 lQcvASHpdTr~~FL-~A~---iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime  178 (293)
T KOG3036|consen  103 LQCVASHPDTRRAFL-RAH---IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME  178 (293)
T ss_pred             HHHHhcCcchHHHHH-Hcc---ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence            888888876544444 443   55433 44432     34557889999999998776643 233445689999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCchHHHHH----hcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHH
Q 040073          238 DHHQFSQQASKAALKLLVELCPWGRNRIKAV----EGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAEL  309 (407)
Q Consensus       238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v----~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i  309 (407)
                      .|   +...+..|+..+-.+-.++.+-.-+.    +.-    .+..++.-|.+.++..+...++.+..+|+.++..|.++
T Consensus       179 ~G---SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL  255 (293)
T KOG3036|consen  179 SG---SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL  255 (293)
T ss_pred             cc---cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            98   88888888888888777666322221    111    22333333333346788899999999999999888777


Q ss_pred             Hhc
Q 040073          310 LKH  312 (407)
Q Consensus       310 ~~~  312 (407)
                      ..+
T Consensus       256 ~~c  258 (293)
T KOG3036|consen  256 RSC  258 (293)
T ss_pred             Hhh
Confidence            553

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.54  E-value=0.88  Score=44.36  Aligned_cols=239  Identities=19%  Similarity=0.176  Sum_probs=132.1

Q ss_pred             hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .++|..++..|.+..  ..|+.++-.|...+.+ +..|..+...|.+..+++.+....+....--.++.+++.++.+.. 
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-   97 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-   97 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-
Confidence            567888999998333  7788888888888875 899999999999999999995544321223344455556665543 


Q ss_pred             HHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc------CCCCCHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD------HHQFSQQAS  247 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~~  247 (407)
                      ...++...+  ....++.+|.-. ..+.....-      .....+..+..  .+.+...-.++..      .......-+
T Consensus        98 ~~~l~~~~~--~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~--~~~~~~~~~~~~~~~~~~~~~~~~lsp~  167 (361)
T PF07814_consen   98 NMHLLLDRD--SLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ--QKSRSLCKELLSSGSSWKSPKPPELSPQ  167 (361)
T ss_pred             chhhhhchh--HHHHHHHHhccccccccccchh------hhhhhhhhHHH--HHHHHHHHHHHhccccccccCCcccccc
Confidence            344444433  577778888711 000000000      00000000010  1111112222211      000122334


Q ss_pred             HHHHHHHHHhC------------C---CCchHHHHHhcCchHHHHHHhhc----c--------c---chhHHHHHHHHHH
Q 040073          248 KAALKLLVELC------------P---WGRNRIKAVEGGGVSVLVDLLLD----V--------T---ERRVCELMLNVLD  297 (407)
Q Consensus       248 ~~A~~aL~~L~------------~---~~~n~~~~v~~G~v~~Lv~lL~~----~--------~---~~~~~~~al~~L~  297 (407)
                      ..|+.+|-.++            .   .+.-|..+.+.|++..+++++.+    .        .   +-...+.++.+|.
T Consensus       168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE  247 (361)
T PF07814_consen  168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE  247 (361)
T ss_pred             cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence            44555555552            0   12246677788999999999862    1        0   1235678999999


Q ss_pred             HHhc-CHhhHHHHHhccC-chHHHHHHHHcC-C---chhhHHHHHHHHHHhccCCc
Q 040073          298 LLCR-CAEGRAELLKHGA-GLAVVSKKILRV-S---HAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       298 ~L~~-~~~~r~~i~~~~g-~i~~Lv~~l~~~-s---~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +.+. +.+++.......+ ..+.+...+... .   ......+++++.|++.++++
T Consensus       248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~  303 (361)
T PF07814_consen  248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS  303 (361)
T ss_pred             HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence            8876 3455655555432 233333333322 1   33367889999999987654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.44  E-value=0.074  Score=53.63  Aligned_cols=152  Identities=12%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh--hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ--LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN  263 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n  263 (407)
                      .+..+..+|++.++.+|++|+.+...|+..-.++.  .....-|  -.|.+-|...   ++++.-..+.|++.+.+...-
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~---ypEvLgsil~Ai~~I~sv~~~  679 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGED---YPEVLGSILKAICSIYSVHRF  679 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcc---cHHHHHHHHHHHHHHhhhhcc
Confidence            56677788999999999999999998875433221  1222223  2356667666   899888888888887764432


Q ss_pred             H-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073          264 R-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC  342 (407)
Q Consensus       264 ~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~  342 (407)
                      + .+-=-.|.+|.|.-.|++. ...+.++....+..+|.......-..+=.-.---|+.+|...+.+.+.+|...+..++
T Consensus       680 ~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             cccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            2 1111247899999999987 7888899999999888754321111000001124666666667777777777666665


Q ss_pred             c
Q 040073          343 K  343 (407)
Q Consensus       343 ~  343 (407)
                      .
T Consensus       759 ~  759 (975)
T COG5181         759 R  759 (975)
T ss_pred             h
Confidence            4

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.43  E-value=0.48  Score=47.45  Aligned_cols=169  Identities=14%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCCCCchHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      ...+.+++.+|+...+..|..-|.+++.+......+..-.| +..|..++.+++. .+.+...-.++++..|-.+.-..-
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            45667888899999998899999999877776666666444 8899999998732 133555555555554432211000


Q ss_pred             HHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          266 KAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      ..+...+|-..+....-. .+..+-..|+..|..+..+.......+...--+..|+..+..++...+..|...+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            111112233333333221 1557788999999999987775555555566788888878777788888899999999887


Q ss_pred             CCchHHHHHHHHh
Q 040073          345 SATARVLQEMLQV  357 (407)
Q Consensus       345 ~~~~~~~~~~~~~  357 (407)
                      .++. -+.++.+.
T Consensus       244 a~~~-~R~~~~~~  255 (713)
T KOG2999|consen  244 APDD-KRFEMAKS  255 (713)
T ss_pred             CChH-HHHHHHHH
Confidence            7764 45555543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.01  Score=55.98  Aligned_cols=50  Identities=24%  Similarity=0.429  Sum_probs=36.4

Q ss_pred             CCcccCccccccCcCce-----ecCCcccccHHHHHHHHhcCC-CCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDPV-----TVSTGITYDRVNIERWLFTCK-NNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv-----~~~~g~t~~r~~i~~~~~~~~-~~~cP~~~~~~~~   57 (407)
                      |-.-.|.||-+ +++-+     +-.|||+|.-.|+.+||+..- ++.||+|+-.+..
T Consensus         2 pi~A~C~Ic~d-~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    2 PIMAECHICID-GRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             CccceeeEecc-CCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            55568999955 44333     345999999999999998642 3689999844444

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.0094  Score=56.77  Aligned_cols=49  Identities=12%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             CcccCccccccCcCce-------e-cCCcccccHHHHHHHHhcCC-----CCCCcccccccc
Q 040073            8 AHFLCPISLQLMRDPV-------T-VSTGITYDRVNIERWLFTCK-----NNTCPVTKQVLQ   56 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv-------~-~~~g~t~~r~~i~~~~~~~~-----~~~cP~~~~~~~   56 (407)
                      .+..|-||++.-.+++       + ..|-|+||-.||.+|-....     ++.||.|+.+..
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4689999999999998       3 45999999999999985433     478999987653

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.25  E-value=0.067  Score=46.72  Aligned_cols=79  Identities=19%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             HHHHHhcCchHHHHHHhhccc--------chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          264 RIKAVEGGGVSVLVDLLLDVT--------ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       264 ~~~~v~~G~v~~Lv~lL~~~~--------~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      ...+++.||+..|+.+|..-.        +......++..|..|..+..|...++.+.+++..++..|...+...+..++
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            556788899999999887631        235667899999999999999999999999999999988877889999999


Q ss_pred             HHHHHHh
Q 040073          336 RILCSVC  342 (407)
Q Consensus       336 ~~L~~l~  342 (407)
                      .+|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999988

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.25  E-value=0.19  Score=44.11  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccc-------------hhhHHHHHHHHhc------CChhHHHHHHHHHHHhhccCC
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNG-------------EEFLESLMRVLKC------GNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~g-------------g~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      ....++++|.||+..+.....++....             |.++..|+..+..      ...+-....+.++.|++...+
T Consensus        11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~   90 (192)
T PF04063_consen   11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE   90 (192)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence            367788888888887766554443211             1377888888765      244556899999999999999


Q ss_pred             chhhhhchhh-h--HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh---cCchHHHHHHhhc
Q 040073          218 PFQLISVKQE-F--FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE---GGGVSVLVDLLLD  282 (407)
Q Consensus       218 ~~~~i~~~~g-~--i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~---~G~v~~Lv~lL~~  282 (407)
                      .+..+..... .  +..|+.+....   +..-+.-++.+|+|+|-..+....+..   .+++|.|+--|..
T Consensus        91 gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   91 GRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             HHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence            8887776433 3  56666667666   777788889999999998888777776   3567776666653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.17  E-value=0.55  Score=48.80  Aligned_cols=66  Identities=15%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      .+.+-+++.+ .+|..++-...++-.   .+.+.....|.++.|-.++.+.++  .+..+|+.+|..+...+
T Consensus       125 Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p--~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  125 PLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNP--MVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCc--hHHHHHHHHHHHHHHhC
Confidence            4444455555 677777777777633   356677889999999999995544  46889999998876554

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.14  E-value=0.0096  Score=56.33  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=41.1

Q ss_pred             cCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .|-||.+-=+|=-+=+|||-.|-.|+..|...++..+||.|+..+.-
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            79999998888777799999999999999977667899999987643

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.13  E-value=0.056  Score=42.12  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccCCchhhhh
Q 040073          158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVADPFQLIS  223 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  223 (407)
                      +...+.+|.+|+..+..++..+.+.||  ++.++..-.  ..++-.++.|..+|++|+...+.++.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~G--i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I   68 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGG--IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI   68 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCC--hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            456788999999988888999998885  888887653  4689999999999999998776665543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.08  E-value=0.22  Score=42.36  Aligned_cols=147  Identities=20%  Similarity=0.182  Sum_probs=95.6

Q ss_pred             HHHHHHHhhc-cCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-Cc
Q 040073          141 IEFLATIITK-SDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DP  218 (407)
Q Consensus       141 i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~  218 (407)
                      +..++..|.. ... ..++-.+.-++..+-   +..++...+.   +-+.+-.++..++.+....+..++..|-... +.
T Consensus         5 l~~lL~~L~~~~~~-~~~r~~a~v~l~k~l---~~~~~~~~~~---~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    5 LDTLLTSLDMLRQP-EEVRSHALVILSKLL---DAAREEFKEK---ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCHHHHHHHCTTTS-CCHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHhcccCCC-HhHHHHHHHHHHHHH---HHhHHHHHHH---HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence            4556666665 222 235777777776652   2233333321   3444555666667778888999998886543 33


Q ss_pred             hhhhhchhhhHHHHHHHcc--cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchh-HHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLR--DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR-VCELMLNV  295 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~-~~~~al~~  295 (407)
                      ...+....|+++.++.++.  .+   +...+..++.+|..=|.+..-|..+.+.| ++-|-+++..+.+.. ++..|+-.
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~---~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~  153 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSK---DRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVG  153 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS----HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHH
Confidence            4456666799999999998  55   78888888998888777666666666665 999999996543444 67776666


Q ss_pred             HHH
Q 040073          296 LDL  298 (407)
Q Consensus       296 L~~  298 (407)
                      |..
T Consensus       154 L~K  156 (157)
T PF11701_consen  154 LCK  156 (157)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.08  E-value=0.0062  Score=44.14  Aligned_cols=49  Identities=20%  Similarity=0.477  Sum_probs=23.7

Q ss_pred             CcccCccccccCc-C---ceec----CCcccccHHHHHHHHhcC--C-------CCCCcccccccc
Q 040073            8 AHFLCPISLQLMR-D---PVTV----STGITYDRVNIERWLFTC--K-------NNTCPVTKQVLQ   56 (407)
Q Consensus         8 ~~~~Cpi~~~~~~-d---Pv~~----~~g~t~~r~~i~~~~~~~--~-------~~~cP~~~~~~~   56 (407)
                      ++..|+||...+. +   |+..    .||++|=+.|+.+||...  .       ...||.|+++++
T Consensus         1 ~~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    1 QELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             ---S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            3678999998754 2   5544    489999999999999751  1       135999998875

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.06  E-value=0.14  Score=37.22  Aligned_cols=65  Identities=20%  Similarity=0.065  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073          247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK  311 (407)
Q Consensus       247 ~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~  311 (407)
                      .+.|++|+.++++.+.+..-+.+.++|+.++++....+.-.++--|..+|..++.+.+|...+.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            57899999999998888888788899999999998865678899999999999999998876654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.05  E-value=1.9  Score=37.41  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=80.2

Q ss_pred             ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHH
Q 040073          198 NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLV  277 (407)
Q Consensus       198 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv  277 (407)
                      ++.+|.+++.++..|+...++   +..  ..++.+...|+++   ++.+++.|+.+|..|...+--+..   ...+..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~ve--~~~~~l~~~L~D~---~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LVE--PYLPNLYKCLRDE---DPLVRKTALLVLSHLILEDMIKVK---GQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HHH--hHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHH
Confidence            467899999999999865543   322  4688999999998   999999999999999875443322   11237777


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc
Q 040073          278 DLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR  325 (407)
Q Consensus       278 ~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~  325 (407)
                      .++.+. +++++..|...+..+.... +...+..   .++.++..+..
T Consensus        70 ~~l~D~-~~~Ir~~A~~~~~e~~~~~-~~~~i~~---~~~e~i~~l~~  112 (178)
T PF12717_consen   70 KLLVDE-NPEIRSLARSFFSELLKKR-NPNIIYN---NFPELISSLNN  112 (178)
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHHHhc-cchHHHH---HHHHHHHHHhC
Confidence            788775 8899999999999998752 2223333   35555555554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.04  E-value=0.098  Score=41.91  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             hccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          180 INNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       180 ~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      .+++...+..|+.+|. +.++.+..-|+.-|..+....+.-+.+...-|+=..+++++.++   +++++..|+.++..|-
T Consensus        38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~---d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE---DPEVRYEALLAVQKLM  114 (119)
T ss_dssp             SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S---SHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Confidence            3333358899999994 45777778888889999888777777777778777888999998   9999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=5.3  Score=41.55  Aligned_cols=268  Identities=17%  Similarity=0.150  Sum_probs=147.5

Q ss_pred             hhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh-HHH
Q 040073           98 TQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES-YLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~  176 (407)
                      .+|+.++-.=.+.+-.+.+|+-+|-.+-+.+++   .+...+....++++|.+.+-+  +.-.+...+..|+...+ ..+
T Consensus       149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~g--v~ta~~sLi~~lvk~~p~~yk  223 (938)
T KOG1077|consen  149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMG--VVTAATSLIEALVKKNPESYK  223 (938)
T ss_pred             hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccc--eeeehHHHHHHHHHcCCHHHh
Confidence            456655433223335556666555555555443   222346788899999876642  24455555655555433 222


Q ss_pred             hHhhccchhhHHHHHHHHhc-------------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC---C
Q 040073          177 SIVINNGEEFLESLMRVLKC-------------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH---H  240 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~  240 (407)
                      ..+..    ++..|..+...             +.+=.+.+.+++|.++=..++..... .-..+...+....++.   .
T Consensus       224 ~~~~~----avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k  298 (938)
T KOG1077|consen  224 TCLPL----AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSK  298 (938)
T ss_pred             hhHHH----HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHhccccCcccc
Confidence            22221    33333333322             23335667777777662222221111 1112334444443321   0


Q ss_pred             CC-CHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073          241 QF-SQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV  318 (407)
Q Consensus       241 ~~-~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~  318 (407)
                      ++ ...++.+.+--..+|+.+ ++....+++  ++..|-++|.+. ..+++-.++..+..|+.+.....++-.+   ...
T Consensus       299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~  372 (938)
T KOG1077|consen  299 KVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH---QDT  372 (938)
T ss_pred             chHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH---HHH
Confidence            00 122333344344456554 445555555  488888999887 7899999999999999987766666554   455


Q ss_pred             HHHHHHc-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          319 VSKKILR-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       319 Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      ++..|.. .+-..++.|+..|+.+|..+.    ...+     +..|+..|.. .+...|+.-.-=+.+|++-|.
T Consensus       373 Ii~sLkterDvSirrravDLLY~mcD~~N----ak~I-----V~elLqYL~t-Ad~sireeivlKvAILaEKyA  436 (938)
T KOG1077|consen  373 IINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQI-----VAELLQYLET-ADYSIREEIVLKVAILAEKYA  436 (938)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhchhh----HHHH-----HHHHHHHHhh-cchHHHHHHHHHHHHHHHHhc
Confidence            6665552 356789999999999996432    4443     3345555543 367777766555556665443

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.19  Score=51.27  Aligned_cols=193  Identities=19%  Similarity=0.158  Sum_probs=116.6

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccC-----CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-----DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                      .....+++++....++|..|+.++.-.+.-.     ......-....++..+-+.+++.   +-.++-.|+.+|..+-..
T Consensus       235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~---sl~VRV~AaK~lG~~~~v  311 (823)
T KOG2259|consen  235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDR---SLSVRVEAAKALGEFEQV  311 (823)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcC---ceeeeehHHHHhchHHHh
Confidence            3567788888888999998887777665332     11111111123455555555554   333333333333222110


Q ss_pred             ---------------------------------------------------CchHHHHHhcCchHHHHHHhhcccchhHH
Q 040073          261 ---------------------------------------------------GRNRIKAVEGGGVSVLVDLLLDVTERRVC  289 (407)
Q Consensus       261 ---------------------------------------------------~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~  289 (407)
                                                                         ++.-..++..|+=-+++.=|.+. --+++
T Consensus       312 See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR  390 (823)
T KOG2259|consen  312 SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVR  390 (823)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHH
Confidence                                                               01122344455555555555553 46899


Q ss_pred             HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc
Q 040073          290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV  369 (407)
Q Consensus       290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~  369 (407)
                      ..|+..|..|+.+..+-.   .  -.+..||.++.+.-..++..|+.+|..++.+        -.++..-++.++..|. 
T Consensus       391 ~AAV~Sl~~La~ssP~FA---~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--------l~i~eeql~~il~~L~-  456 (823)
T KOG2259|consen  391 RAAVASLCSLATSSPGFA---V--RALDFLVDMFNDEIEVVRLKAIFALTMISVH--------LAIREEQLRQILESLE-  456 (823)
T ss_pred             HHHHHHHHHHHcCCCCcH---H--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------heecHHHHHHHHHHHH-
Confidence            999999999998654332   1  1466888866555578899999999999964        1222345777888887 


Q ss_pred             CCCHHHHHHHHHHHHHHHhhccCCCCCCc
Q 040073          370 DASVKTKERAREILKLNARAWRDSPCVPA  398 (407)
Q Consensus       370 ~~~~~~k~~A~~lL~~l~~~~~~~~~~~~  398 (407)
                      +.+..+|+....+|+..+-  ..-.||.+
T Consensus       457 D~s~dvRe~l~elL~~~~~--~d~~~i~m  483 (823)
T KOG2259|consen  457 DRSVDVREALRELLKNARV--SDLECIDM  483 (823)
T ss_pred             hcCHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence            5699999999999987543  23345443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=6.2  Score=41.56  Aligned_cols=255  Identities=11%  Similarity=0.071  Sum_probs=132.0

Q ss_pred             hcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc---
Q 040073          107 AKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN---  182 (407)
Q Consensus       107 L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~---  182 (407)
                      ++.++ -.+.+|+.+...+....|+--+.++     +.-.++|...+.+  +.-.++..+..+|....+.-....+-   
T Consensus       151 l~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hG--VL~~~l~l~~e~c~~~~~~l~~fr~l~~~  223 (866)
T KOG1062|consen  151 LQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHG--VLIAGLHLITELCKISPDALSYFRDLVPS  223 (866)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCc--eeeeHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34455 7888999988888777666444333     3333444433332  13334444444443321111111100   


Q ss_pred             -------------------chh---h----HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch--hhhHHHHHH
Q 040073          183 -------------------GEE---F----LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK--QEFFTEIVN  234 (407)
Q Consensus       183 -------------------gg~---~----i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~  234 (407)
                                         +|-   +    +-.+.++|..++.+..+....+|..++...+..+-++..  -..|..+..
T Consensus       224 lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~  303 (866)
T KOG1062|consen  224 LVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD  303 (866)
T ss_pred             HHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence                               000   0    113345555666777777777777776666555444432  012222222


Q ss_pred             HcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCch---------------HHHHHHhhcccchhHHHHHHHHHHHH
Q 040073          235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGV---------------SVLVDLLLDVTERRVCELMLNVLDLL  299 (407)
Q Consensus       235 lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v---------------~~Lv~lL~~~~~~~~~~~al~~L~~L  299 (407)
                      +.  .   +...+..|+.+|.....+++|-.+-+..+.+               ..+++.|++. |..++.+|+..+..|
T Consensus       304 I~--~---~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~l  377 (866)
T KOG1062|consen  304 IR--S---NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYAL  377 (866)
T ss_pred             cc--C---CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence            22  1   4567777777777766655533222221111               2344455553 666677777776666


Q ss_pred             hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc-CCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073          300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF-SATARVLQEMLQVGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~-~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      ..... -..++      .-|+.+|...++..+...+.-+..++.. .++  -++.      |..++.++...|+-.--..
T Consensus       378 vn~~N-v~~mv------~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~--k~W~------idtml~Vl~~aG~~V~~dv  442 (866)
T KOG1062|consen  378 VNESN-VRVMV------KELLEFLESSDEDFKADIASKIAELAEKFAPD--KRWH------IDTMLKVLKTAGDFVNDDV  442 (866)
T ss_pred             hcccc-HHHHH------HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--chhH------HHHHHHHHHhcccccchhh
Confidence            65332 22222      2345555555566666666666665542 333  2443      6777777777777766667


Q ss_pred             HHHHHHHHHhh
Q 040073          379 AREILKLNARA  389 (407)
Q Consensus       379 A~~lL~~l~~~  389 (407)
                      ...++++++..
T Consensus       443 ~~nll~LIa~~  453 (866)
T KOG1062|consen  443 VNNLLRLIANA  453 (866)
T ss_pred             HHHHHHHHhcC
Confidence            77777777664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.83  E-value=1.4  Score=46.52  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK  266 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~  266 (407)
                      +..+.+=|++.|+.+|..|.+++..+= ..+    +.  .-+++++.+++.++   ++.+++.|+-|+.++=.  -++..
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~-~~e----l~--~~~~~~ik~~l~d~---~ayVRk~Aalav~kly~--ld~~l  161 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLR-VKE----LL--GNIIDPIKKLLTDP---HAYVRKTAALAVAKLYR--LDKDL  161 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcC-hHH----HH--HHHHHHHHHHccCC---cHHHHHHHHHHHHHHHh--cCHhh
Confidence            455555566666666666666665551 111    11  12466666666666   66666666666666543  23334


Q ss_pred             HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      ..++|.+..+..++.+. ++.+...|+.+|..+..
T Consensus       162 ~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         162 YHELGLIDILKELVADS-DPIVIANALASLAEIDP  195 (757)
T ss_pred             hhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence            45556666666666554 66666666666666654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.83  E-value=0.011  Score=61.60  Aligned_cols=47  Identities=19%  Similarity=0.402  Sum_probs=40.7

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      +.|++|.+ ..+||++.|||.||+.|+.+.+.......||.|+..+.+
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            79999999 889999999999999999998876545579999877654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.82  E-value=0.71  Score=40.19  Aligned_cols=114  Identities=19%  Similarity=0.202  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCC-------CCchHHHHHHHHHhc
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDA-------GSDECDEALSILYHL  168 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~-------~~~~~~~a~~~L~~L  168 (407)
                      .......+..+.+.. ...+.+..|+...... ...-..|++.||+..|+.+|..-..       ......+++..|..+
T Consensus        65 ~~~p~~~i~~L~~~~-~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRP-STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             CHHHHHHHHHHTTT---HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHccC-ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            344556777777663 2225566666654443 3566778889999999999975322       113467788888888


Q ss_pred             CCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073          169 NVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF  213 (407)
Q Consensus       169 ~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  213 (407)
                      ..+..+...++...+  ++..|+..|.+.+..++..+..+|..++
T Consensus       144 ~n~~~G~~~v~~~~~--~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPD--SVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSS--HHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcH--HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            888877677776554  8999999999999999999999998875

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.74  E-value=2.9  Score=44.74  Aligned_cols=195  Identities=16%  Similarity=0.120  Sum_probs=119.2

Q ss_pred             hHHHHHHHHhc--CChhHHHHHHHHHHHhhc-cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073          186 FLESLMRVLKC--GNYQSRSYAIMLLKSIFE-VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR  262 (407)
Q Consensus       186 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~  262 (407)
                      .+....+.|..  .+.++|+.|+.++..+.. ..+.-....  ...++.|++.|+++     -.+-.|++|+.-++..+-
T Consensus       569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE-----iTRl~AvkAlt~Ia~S~l  641 (1233)
T KOG1824|consen  569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE-----ITRLTAVKALTLIAMSPL  641 (1233)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccc
Confidence            34455566655  488999999999987643 232211111  23577777777665     567778888887776543


Q ss_pred             --hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh--hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHH
Q 040073          263 --NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE--GRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL  338 (407)
Q Consensus       263 --n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~--~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L  338 (407)
                        +...... .+++.|.+.+... .+..+...+.++..|..+..  +.....+.  .+.-+-.++...+....+.|+.+|
T Consensus       642 ~i~l~~~l~-~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~--vL~el~~Lisesdlhvt~~a~~~L  717 (1233)
T KOG1824|consen  642 DIDLSPVLT-EILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLEA--VLVELPPLISESDLHVTQLAVAFL  717 (1233)
T ss_pred             eeehhhhHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHH
Confidence              3333333 3688888888875 66777778888777765331  12222221  122222223344577899999999


Q ss_pred             HHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH--HhhccCCCCCC
Q 040073          339 CSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN--ARAWRDSPCVP  397 (407)
Q Consensus       339 ~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l--~~~~~~~~~~~  397 (407)
                      ..+....+.   ..-.+..-.++.++.++++.   -.+-.|-..+-.+  +-++...|+.+
T Consensus       718 ~tl~~~~ps---~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~~~~l~  772 (1233)
T KOG1824|consen  718 TTLAIIQPS---SLLKISNPILDEIIRLLRSP---LLQGGALSALLLFFQALVITKEPDLD  772 (1233)
T ss_pred             HHHHhcccH---HHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHHHHHHhcCCCCcc
Confidence            999976554   34455567899999999964   3343443333333  22456777876

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.70  E-value=3.5  Score=39.27  Aligned_cols=193  Identities=16%  Similarity=0.102  Sum_probs=105.6

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC---hh
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVS---ES  173 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~---~~  173 (407)
                      +...+..+.... ..|..++..|..+...... -+.+.+  .-.+..+.+.++.+..  ..+..|+.++..++..   .+
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCc
Confidence            445555555333 8889999999988765322 223322  2346677777777655  2366666666666543   12


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCC--hhHHHHHHHHHHHhhccCCc-hhhhhchhhhHHH--HHHHcccCCC-------
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGN--YQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTE--IVNVLRDHHQ-------  241 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~--Lv~lL~~~~~-------  241 (407)
                      +...++..    ..|.|...+..++  ...|..++.+|.-++..... ...+...-..+..  ....++.++.       
T Consensus       122 ~~~ei~~~----~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  122 DSEEIFEE----LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             cHHHHHHH----HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence            33455542    6888888887653  45666777677766543211 1111100012331  2222332210       


Q ss_pred             CCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073          242 FSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC  300 (407)
Q Consensus       242 ~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~  300 (407)
                      .++.+..+|+.+-.-|... +.....-.-...+|.|..+|.+. +.+++-.|-.+|..|-
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            1345677776555444442 33222222234699999999986 7888776666666553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.68  E-value=1.7  Score=45.46  Aligned_cols=220  Identities=14%  Similarity=0.105  Sum_probs=133.8

Q ss_pred             hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHH-hcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHH--HHH
Q 040073          129 ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILY-HLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSR--SYA  205 (407)
Q Consensus       129 ~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~--~~a  205 (407)
                      ..-|...++.|+...|+.+......  .....+..+|. .+....+..      .  .+++.+...+.+.. ...  -.+
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q~e--~akl~~~~aL~~~i~f~~~~~------~--~v~~~~~s~~~~d~-~~~en~E~  562 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQFE--EAKLKWYHALAGKIDFPGERS------Y--EVVKPLDSALHNDE-KGLENFEA  562 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHhch--HHHHHHHHHHhhhcCCCCCch------h--hhhhhhcchhhhhH-HHHHHHHH
Confidence            4456667788999999998876554  23555555554 222211111      1  14555555554322 222  356


Q ss_pred             HHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHh-cCchHHHHHHhhc
Q 040073          206 IMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVE-GGGVSVLVDLLLD  282 (407)
Q Consensus       206 ~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~-~G~v~~Lv~lL~~  282 (407)
                      ..++.||++.+++. ..+... -+++.+-.++...   ++-.+++++..+.||..++. ....+++ ...++.....+..
T Consensus       563 L~altnLas~s~s~r~~i~ke-~~~~~ie~~~~ee---~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~  638 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKE-KALGKIEELMTEE---NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV  638 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHH-hcchhhHHHhhcc---cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence            67788888776654 344443 3355444556566   89999999999999998766 4455566 3456666655555


Q ss_pred             ccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHH
Q 040073          283 VTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVS  361 (407)
Q Consensus       283 ~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~  361 (407)
                      . +....-.+++++..++.-.++ ...+.+...+...++..+.+.+...+...+.+..++..  ...++...++....++
T Consensus       639 ~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~--~~~ei~~~~~~~~~~~  715 (748)
T KOG4151|consen  639 A-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE--ALFEIAEKIFETEVME  715 (748)
T ss_pred             h-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH--HHHHHHHHhccchHHH
Confidence            3 556666777777755553333 22243334466788887888888889888888888654  3344666666666665


Q ss_pred             HHHHH
Q 040073          362 KLCLV  366 (407)
Q Consensus       362 ~Ll~l  366 (407)
                      -+..+
T Consensus       716 ~l~~~  720 (748)
T KOG4151|consen  716 LLSGL  720 (748)
T ss_pred             HHHHH
Confidence            55444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=6.5  Score=41.00  Aligned_cols=249  Identities=12%  Similarity=0.147  Sum_probs=153.7

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChh-HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSER-NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV  179 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i  179 (407)
                      .++-.|.++. -.|.+|+-.|+.+...-|+ .|.      .+|.|+.-|++++.+  ++..|+.+++.|+..++  +..+
T Consensus       148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~--V~SAAV~VICELArKnP--knyL  217 (877)
T KOG1059|consen  148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPS--VVSAAVSVICELARKNP--QNYL  217 (877)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCch--HHHHHHHHHHHHHhhCC--cccc
Confidence            3444445554 7788888888887655444 233      368889999888873  58999999999998765  4454


Q ss_pred             hccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH--H
Q 040073          180 INNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV--E  256 (407)
Q Consensus       180 ~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~--~  256 (407)
                      .     .-|.+.++|.. .|-=+......+..+|+-..+   ..+.  ..+++|.+++.+-  .-....-....++.  +
T Consensus       218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK--KLieplt~li~sT--~AmSLlYECvNTVVa~s  285 (877)
T KOG1059|consen  218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK--KLIEPITELMEST--VAMSLLYECVNTVVAVS  285 (877)
T ss_pred             c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh--hhhhHHHHHHHhh--HHHHHHHHHHHHheeeh
Confidence            3     34667777754 344455667777777765443   2443  4789999999764  11122222222222  4


Q ss_pred             hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHH
Q 040073          257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVR  336 (407)
Q Consensus       257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~  336 (407)
                      ++...++..+.+.. .+..|-.++.+. |.+++-..+-++..+....  -..+.++   -..+++.|.+.++..+-.|+.
T Consensus       286 ~s~g~~d~~asiqL-CvqKLr~fieds-DqNLKYlgLlam~KI~ktH--p~~Vqa~---kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  286 MSSGMSDHSASIQL-CVQKLRIFIEDS-DQNLKYLGLLAMSKILKTH--PKAVQAH---KDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             hccCCCCcHHHHHH-HHHHHhhhhhcC-CccHHHHHHHHHHHHhhhC--HHHHHHh---HHHHHHHhccCCchhHHHHHH
Confidence            44443344443433 366666777775 8899999999999888632  2233343   246677777778899999999


Q ss_pred             HHHHHhccCCchHHHHHHHHhChHHHHHHHH-hcCCCHHHHHHHHHHHHHHHh
Q 040073          337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVL-QVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll-~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .|+-+...    +-..++     +..|+.-+ .++++.-.-+....++.+++.
T Consensus       359 Ll~gmVsk----kNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  359 LLYGMVSK----KNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             HHHHHhhh----hhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            99998853    234453     33454433 334433334445556665544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.64  E-value=1.3  Score=45.09  Aligned_cols=256  Identities=14%  Similarity=0.164  Sum_probs=134.8

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh---ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQ---SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~---~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      .-|...+..|++.. ..+..|+.....+++-   +.+ -+.+...|.|  |-.-|...++  ++.--.+.+++.+.... 
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~i--LyE~lge~yp--EvLgsil~Ai~~I~sv~-  677 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNI--LYENLGEDYP--EVLGSILKAICSIYSVH-  677 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHH--HHHhcCcccH--HHHHHHHHHHHHHhhhh-
Confidence            34556677777665 8888888777766542   111 2334444532  3344443333  23444444444332211 


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      ..+.+---..| .+|.|.-+|++....+..+.+..+.-++..........+=-.+--.|+++|++.   +.+++++|..+
T Consensus       678 ~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~---nKeiRR~A~~t  753 (975)
T COG5181         678 RFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW---NKEIRRNATET  753 (975)
T ss_pred             cccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---hHHHHHhhhhh
Confidence            11111111122 899999999999899999999999999876554322111112344589999988   99999999998


Q ss_pred             HHHhCCCCchHHHHHhcCchHHHHHHhhcccchh---HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---
Q 040073          254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR---VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---  327 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~---~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---  327 (407)
                      +.-++..      +.-..++..|+.-|+.. ++.   +...|.++....|. +         -..+|.|   |.++.   
T Consensus       754 fG~Is~a------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-p---------fsVlP~l---m~dY~TPe  813 (975)
T COG5181         754 FGCISRA------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-P---------FSVLPTL---MSDYETPE  813 (975)
T ss_pred             hhhHHhh------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-c---------hhhHHHH---HhcccCch
Confidence            8877541      11122333344333332 111   11112222111111 0         0123443   33432   


Q ss_pred             chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHH-HHhcCCCHHHHHHHHHHHHHHHh
Q 040073          328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCL-VLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~-ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ...|...+++++.+...-++. ....   .-.+.+|++ .|. +-++..|+.|..+++-|.-
T Consensus       814 ~nVQnGvLkam~fmFeyig~~-s~dY---vy~itPlleDAlt-DrD~vhRqta~nvI~Hl~L  870 (975)
T COG5181         814 ANVQNGVLKAMCFMFEYIGQA-SLDY---VYSITPLLEDALT-DRDPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             hHHHHhHHHHHHHHHHHHHHH-HHHH---HHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence            345666666666655432221 1222   234555544 444 5688888888888876643

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.61  E-value=0.28  Score=43.14  Aligned_cols=122  Identities=19%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHh----------------cCchHHHHHHhhccc-----chhHHHHHHHHHHHHhcC
Q 040073          244 QQASKAALKLLVELCPWGRNRIKAVE----------------GGGVSVLVDLLLDVT-----ERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       244 ~~~~~~A~~aL~~L~~~~~n~~~~v~----------------~G~v~~Lv~lL~~~~-----~~~~~~~al~~L~~L~~~  302 (407)
                      ......++..|.||+..+.....+++                ..++..|++.+..+.     ...-....+.+|.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            34555666777777777666654443                236778888887621     245567899999999999


Q ss_pred             HhhHHHHHhccCch---HHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH---hChHHHHHHHHh
Q 040073          303 AEGRAELLKHGAGL---AVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ---VGVVSKLCLVLQ  368 (407)
Q Consensus       303 ~~~r~~i~~~~g~i---~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~---~g~i~~Ll~ll~  368 (407)
                      ++||.-+.....+.   ..|+-++...|..-+..+++++.|+|-....+   .....   .+.++.|+.-|-
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H---~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH---EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH---HHhcCchhhhhHHHHHhhcc
Confidence            99999998765444   34444444446777889999999999754443   33333   578888877776

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.028  Score=52.47  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             CCCC--CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073            4 IEVP--AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         4 ~~~p--~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      .++|  ++=.||||-----..|..||||.-|..||.+++-+  .+.|-.|+....
T Consensus       415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~  467 (489)
T KOG4692|consen  415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVI  467 (489)
T ss_pred             CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceee
Confidence            3455  56799999988888899999999999999999975  677888876554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.57  E-value=0.35  Score=44.33  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHh
Q 040073          202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLL  280 (407)
Q Consensus       202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL  280 (407)
                      ...|..+|.-++-.++..+.++.....+..|+++|...  ..+.++.+++.+|..+.. ++.|...+.+.|++..++.++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            45677888888777776666666678899999999543  268888889998887666 677999999999999999999


Q ss_pred             hccc-chhHHHHHHHHHHHHhc
Q 040073          281 LDVT-ERRVCELMLNVLDLLCR  301 (407)
Q Consensus       281 ~~~~-~~~~~~~al~~L~~L~~  301 (407)
                      ++.. +.+++-+++..|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            8763 56777777777775544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=94.51  E-value=2.4  Score=45.11  Aligned_cols=216  Identities=11%  Similarity=0.117  Sum_probs=142.3

Q ss_pred             HHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc
Q 040073          160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD  238 (407)
Q Consensus       160 ~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~  238 (407)
                      .|.+++...+.....+..++..    ++...+..+.- ...-++..|++++..-+   ......-...+++..|+++...
T Consensus       469 Ra~~~i~~fs~~~~~~~~~~~~----fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~  541 (1005)
T KOG2274|consen  469 RAFLTISKFSSSTVINPQLLQH----FLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK  541 (1005)
T ss_pred             HHHHHHHHHHhhhccchhHHHH----HHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc
Confidence            5555555444333233333321    34444555543 45566677777666654   2222233346788889999877


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073          239 HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA  317 (407)
Q Consensus       239 ~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~  317 (407)
                      .   +.++...-..+|...+..+.-.....++-..|-.+.+.... .++-+...+--++..|+...++..-...  ..||
T Consensus       542 ~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iP  616 (1005)
T KOG2274|consen  542 S---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE--RLIP  616 (1005)
T ss_pred             c---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHH
Confidence            7   88888888999999999888777778888888888777553 2677777888888888764333322222  4689


Q ss_pred             HHHHHHHcCC----chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          318 VVSKKILRVS----HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       318 ~Lv~~l~~~s----~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .+|..|....    .....-|+.+|..+-++.++. .-..+ -.-++|++....-..++..+-++|.+.|+.+-..
T Consensus       617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l-~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLL-ICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHH-HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            9999776543    445677788888788776654 33333 3357888877753345889999999999887664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.51  E-value=4  Score=43.78  Aligned_cols=231  Identities=11%  Similarity=0.106  Sum_probs=128.1

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhc---------CcHHHHHHHhhccCCC--CchHHHHHHHHHhc
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAA---------GAIEFLATIITKSDAG--SDECDEALSILYHL  168 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~---------G~i~~Lv~lL~~~~~~--~~~~~~a~~~L~~L  168 (407)
                      -+++.+.++. +.+..|..+|.+++..+ +.+-.++.+.         =.+-.|-.++.....+  ....+.....|..=
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~  940 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH  940 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence            3455666776 66667777888887743 2222222110         0122233333322221  11123333333333


Q ss_pred             CCCh-hHHHhHhhccch--------hhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073          169 NVSE-SYLKSIVINNGE--------EFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH  239 (407)
Q Consensus       169 ~~~~-~~~~~~i~~~gg--------~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~  239 (407)
                      |.+. +..+.++.+-=|        ..+|.|-..+.++....|.-++.++................ ..|.-...+++++
T Consensus       941 cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen  941 CECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP 1019 (1233)
T ss_pred             cccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC
Confidence            3322 333444443221        35677777888888888988888888655444444333333 3577888899998


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---------------------cchhHHHHHHHHHHH
Q 040073          240 HQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---------------------TERRVCELMLNVLDL  298 (407)
Q Consensus       240 ~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---------------------~~~~~~~~al~~L~~  298 (407)
                         +.++++.|+.++-.-+.+   |..+++ +.+|-|+..|-+.                     .+-+++..|..++..
T Consensus      1020 ---Dl~VrrvaLvv~nSaahN---KpslIr-DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1020 ---DLEVRRVALVVLNSAAHN---KPSLIR-DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred             ---chhHHHHHHHHHHHHHcc---CHhHHH-HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence               999999999999877654   444444 4566666655431                     134677788888888


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcC---CchhhHHHHHHHHHHhccCCc
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRV---SHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~---s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      |-.....+..+..       ++..+..|   .-..+-....+|..++..+++
T Consensus      1093 LLdscld~~dit~-------Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITE-------FLNHVEDGLEDHYDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred             HHHhhhhhccHHH-------HHHHHHhhcchhhHHHHHHHHHHHHHHhhCcH
Confidence            8776655544433       12212221   123344455566666655565

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.011  Score=39.50  Aligned_cols=47  Identities=17%  Similarity=0.201  Sum_probs=37.6

Q ss_pred             ccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      --|.||.+--.|-|+-.|||. .|..|=.+-|+. ++..||+|+.++.+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence            369999998889989999997 577776666654 48899999987643

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=4.1  Score=44.63  Aligned_cols=216  Identities=13%  Similarity=0.156  Sum_probs=116.6

Q ss_pred             chHHHHHHHHHhcCCChhHHHhHhhcc-chhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073          156 DECDEALSILYHLNVSESYLKSIVINN-GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN  234 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~-gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~  234 (407)
                      .++..+..+|..++...+ ...+.... . .....|..-+++.+...+.....+|..|-.....-..... ...|+.+|=
T Consensus       669 ~vQkK~yrlL~~l~~~~s-~~~~~~q~i~-~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~EvIL  745 (1176)
T KOG1248|consen  669 KVQKKAYRLLEELSSSPS-GEGLVEQRID-DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIPEVIL  745 (1176)
T ss_pred             HHHHHHHHHHHHHhcCCc-hhhHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHH
Confidence            358888888888877632 22222221 1 1333444445555566666777777776544331111111 123555554


Q ss_pred             HcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC------chHHHHHHhhccc-chhHHHHHH--HHHHHHhcCHhh
Q 040073          235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG------GVSVLVDLLLDVT-ERRVCELML--NVLDLLCRCAEG  305 (407)
Q Consensus       235 lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G------~v~~Lv~lL~~~~-~~~~~~~al--~~L~~L~~~~~~  305 (407)
                      .++.-   +..+++.|..+|..++.    .....+.|      .|...+..+..+- +......+.  -++..+..   .
T Consensus       746 ~~Ke~---n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e  815 (1176)
T KOG1248|consen  746 SLKEV---NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E  815 (1176)
T ss_pred             hcccc---cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence            55555   89999999999999982    11112222      4445555554431 112222222  22222221   1


Q ss_pred             HHHHHhccCchHHHH----HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073          306 RAELLKHGAGLAVVS----KKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE  381 (407)
Q Consensus       306 r~~i~~~~g~i~~Lv----~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~  381 (407)
                      ...+++. ..++.++    ..|...++...+.|++.+..++...++.  .-.-...-.++.++.+++ +.+-..|.+...
T Consensus       816 ~~~~ld~-~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~--~l~~~~~~LL~sll~ls~-d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  816 FKNILDD-ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE--CLSPHLEELLPSLLALSH-DHKIKVRKKVRL  891 (1176)
T ss_pred             HhccccH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH--HHhhhHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence            1122221 2223333    3334456888999999999998866542  211112236788888777 457888888888


Q ss_pred             HHHHHHh
Q 040073          382 ILKLNAR  388 (407)
Q Consensus       382 lL~~l~~  388 (407)
                      +|+.|-+
T Consensus       892 LlekLir  898 (1176)
T KOG1248|consen  892 LLEKLIR  898 (1176)
T ss_pred             HHHHHHH
Confidence            8876655

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.18  E-value=9.7  Score=40.97  Aligned_cols=225  Identities=19%  Similarity=0.140  Sum_probs=120.8

Q ss_pred             hhhHHHHHHHhcCC-----C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC------CCchHHHHHHH
Q 040073           97 KTQIVKILNDAKKS-----P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA------GSDECDEALSI  164 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-----~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~------~~~~~~~a~~~  164 (407)
                      .+++..++..|.+.     . +.-...++-|+..++- ..||+.+.+.|+++.|++.|.....      ...+-+.-+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            45666677666431     1 2223344455555555 8999999999999999998863211      12234555544


Q ss_pred             HHhcCCChhH--HH---hHhhcc-----chhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCchhhhhchhhhHH
Q 040073          165 LYHLNVSESY--LK---SIVINN-----GEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFT  230 (407)
Q Consensus       165 L~~L~~~~~~--~~---~~i~~~-----gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~  230 (407)
                      +-.+......  ..   ......     +..-+..|.+.+.+    .+..+.+..+++|-.|+..++........  .+.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            4433221110  00   000000     10136666666665    36778889999999998766554333331  233


Q ss_pred             HHHHHcccCCCCCHHHHHHHHHHHHHhCCC----C---chHHHHHhcCchHHHHHHhhccc-------ch--------hH
Q 040073          231 EIVNVLRDHHQFSQQASKAALKLLVELCPW----G---RNRIKAVEGGGVSVLVDLLLDVT-------ER--------RV  288 (407)
Q Consensus       231 ~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~----~---~n~~~~v~~G~v~~Lv~lL~~~~-------~~--------~~  288 (407)
                      +-+++=+-+....++- +..+..+..++..    .   .-|..+++.|++...++.|...-       ++        ..
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            3333211110001111 2235555555542    1   24778899999998888886531       12        23


Q ss_pred             HHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC
Q 040073          289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS  327 (407)
Q Consensus       289 ~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s  327 (407)
                      ...++..|.-|+.+...-+.++. ..+++.+-. |-..+
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~lH~-LEqvs  388 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIA-EQLLPLLHR-LEQVS  388 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHH-hhHHHHHHH-hhcCC
Confidence            35678888888886554444444 345654443 54443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.17  E-value=0.044  Score=36.13  Aligned_cols=43  Identities=19%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             CccccccC--cCceec--CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073           12 CPISLQLM--RDPVTV--STGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus        12 Cpi~~~~~--~dPv~~--~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      ||+|.+.|  +|--..  +||+.+||.|-.+-... ++..||-|++++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence            79999888  222233  48999999998887653 478999999875

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.05  E-value=0.026  Score=56.74  Aligned_cols=38  Identities=29%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             CcccCccccccC----cCceecCCcccccHHHHHHHHhcCCCCCCc
Q 040073            8 AHFLCPISLQLM----RDPVTVSTGITYDRVNIERWLFTCKNNTCP   49 (407)
Q Consensus         8 ~~~~Cpi~~~~~----~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP   49 (407)
                      +.++|+||...|    ..||.+-||||.|+.|.+.-..    .+||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC
Confidence            347999997666    5799999999999999999764    4677

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.88  E-value=0.031  Score=51.39  Aligned_cols=43  Identities=23%  Similarity=0.470  Sum_probs=35.3

Q ss_pred             ccCccccccCcC---ceecCCcccccHHHHHHHHhcC-CCCCCcccc
Q 040073           10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTC-KNNTCPVTK   52 (407)
Q Consensus        10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~   52 (407)
                      |.||+..+.-.|   ||.+.|||..-+.++.+.-+++ ..+.||.|-
T Consensus       337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            899998877765   9999999999999999866542 147899993

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.83  E-value=0.027  Score=38.02  Aligned_cols=45  Identities=11%  Similarity=0.051  Sum_probs=33.7

Q ss_pred             cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      +..|=.|...=...++++|||..|+.|    |...+-.-||.|+.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~----f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNC----FPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEccccccccccccccceeeccc----cChhhccCCCCCCCcccC
Confidence            345556676667788999999999998    443234669999998865

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.83  E-value=0.37  Score=37.31  Aligned_cols=67  Identities=18%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073          227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLDLLC  300 (407)
Q Consensus       227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~  300 (407)
                      .++++++..+.+.   +..++..|+.+|+|++..-.  ..+..  ...++.|.+++.+. ++.+ ..++..|.+|-
T Consensus        27 ~Il~pVL~~~~D~---d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~-d~~V-r~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQ---DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP-DENV-RSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-chhH-HHHHHHHHHHh
Confidence            5899999999998   99999999999999986332  33332  35778888888775 5665 45557776653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.81  E-value=6.3  Score=38.68  Aligned_cols=126  Identities=15%  Similarity=0.169  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhcC---ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCC
Q 040073          186 FLESLMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWG  261 (407)
Q Consensus       186 ~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~  261 (407)
                      ....|..++++.   ...+-..|+.++..+...++....+..+.|.++.+++.+. .+-..+.++...--.+|..||.+.
T Consensus       107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~  186 (379)
T PF06025_consen  107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN  186 (379)
T ss_pred             HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence            566667777763   4556678889999988777777777888899999998887 432246788888889999999999


Q ss_pred             chHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhcC-HhhHHHHHh
Q 040073          262 RNRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCRC-AEGRAELLK  311 (407)
Q Consensus       262 ~n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~~-~~~r~~i~~  311 (407)
                      ++.+.+.+.++++.+++++.+..      ..+.....-..+..|.++ +.-|..+++
T Consensus       187 ~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  187 RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999999999999987742      123444455566777774 444555544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.81  E-value=0.98  Score=40.21  Aligned_cols=150  Identities=17%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCChh-HHHhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVSES-YLKSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~-~~~~~i~~~gg~~i  187 (407)
                      ...+.|+..|.-++.+ |+.|..+.++..--.|-.+|...+..   +-.+-.++++++.|..++. ...+++....  ++
T Consensus       115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe--iv  191 (315)
T COG5209         115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE--IV  191 (315)
T ss_pred             hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh--HH
Confidence            3446788888888877 89999999988655555566543331   2347778888988877653 3345555444  89


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHH-HcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVN-VLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~-lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      |...+++..|+.-.+.-|+.++..+..++..-..++..-.       .+.-++. +...+   +....+.+.++-..||.
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeecC
Confidence            9999999999999999999999988877776555543211       2233332 22334   77888999999888887


Q ss_pred             CCchHHHH
Q 040073          260 WGRNRIKA  267 (407)
Q Consensus       260 ~~~n~~~~  267 (407)
                      .+..|..+
T Consensus       269 ~p~aR~lL  276 (315)
T COG5209         269 KPHARALL  276 (315)
T ss_pred             CHhHHHHH
Confidence            66665544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.77  E-value=0.17  Score=40.52  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=56.7

Q ss_pred             hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .++..|+++|...  .++.....|+.-|..++.. +..|..+-+.|+=..++++|.+. +++++..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s--~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKS--DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SH--HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccC--CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            4788999999543  2778888899999999884 55666666689999999999986 89999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.048  Score=49.83  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=37.9

Q ss_pred             cCcccc-ccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISL-QLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~-~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .||+|. +.+..|=    +-+|||+.|-+|...-|.. |...||.|+..+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh
Confidence            599998 6677774    3389999999999999987 48899999987755

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=93.61  E-value=0.015  Score=59.62  Aligned_cols=46  Identities=24%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             ccCccccccCcCceec---CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTV---STGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.||+|..-+.|-.+.   .|+|-||.+||..|-.-  ..+||+|+..+..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhhe
Confidence            4789999888888755   59999999999999864  6799999988765

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.52  E-value=11  Score=41.02  Aligned_cols=225  Identities=16%  Similarity=0.134  Sum_probs=130.9

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      +..|++.++..+ ..+-.|++.+..++...|.   .++ ..+|...++++...++.. ..-.|.-+|+.|+.-.--.-..
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~La-d~vi~svid~~~p~e~~~-aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELA-DQVIGSVIDLFNPAEDDS-AWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHH-HHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhcCCcchHH
Confidence            334455555555 7788899999999888662   222 224666667665444322 3667778888877532111111


Q ss_pred             hhccchhhHHHHHHHHhc--------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHH
Q 040073          179 VINNGEEFLESLMRVLKC--------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKA  249 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~  249 (407)
                      +.    +++|.++.-|.-        ....+|..|+-+++.++...+....--..+...+.|+ ..+-+.   .-.++++
T Consensus       418 l~----dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRA  490 (1133)
T KOG1943|consen  418 LE----DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRA  490 (1133)
T ss_pred             HH----HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHH
Confidence            11    156666666532        2456889999999999876554321111122333333 334455   6789999


Q ss_pred             HHHHHHHhCCCCch--------------------------HHHHHh-cCchHHHHHHhhccc----chhHHHHHHHHHHH
Q 040073          250 ALKLLVELCPWGRN--------------------------RIKAVE-GGGVSVLVDLLLDVT----ERRVCELMLNVLDL  298 (407)
Q Consensus       250 A~~aL~~L~~~~~n--------------------------~~~~v~-~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~  298 (407)
                      |..|+.....-..|                          ...+.+ .|...++++.|....    +..+++.++.+|..
T Consensus       491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~  570 (1133)
T KOG1943|consen  491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK  570 (1133)
T ss_pred             HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            99988866442221                          222333 466667776665531    67899999999999


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS  340 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~  340 (407)
                      |+....   +... ....|.++...+..+...+..+..+...
T Consensus       571 Ls~~~p---k~~a-~~~L~~lld~~ls~~~~~r~g~~la~~e  608 (1133)
T KOG1943|consen  571 LSLTEP---KYLA-DYVLPPLLDSTLSKDASMRHGVFLAAGE  608 (1133)
T ss_pred             HHHhhH---Hhhc-ccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence            887432   2233 3456777776666555444444433333

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.52  E-value=3.8  Score=40.75  Aligned_cols=126  Identities=15%  Similarity=0.151  Sum_probs=86.7

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCc-------------hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADP-------------FQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      .+..|+.+|.+  .+....|+..+.-|..+ ++.             +++++.  -.+|.|++-.++.   +.+.+.+-+
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~---~~~~k~~yL  344 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA---DDEIKSNYL  344 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc---ChhhHHHHH
Confidence            56677777765  67788999999988766 221             222222  3678888888776   667888889


Q ss_pred             HHHHHhCCCCchHHHHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073          252 KLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL  324 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~  324 (407)
                      .||.++..+-+...-+-+ ...+|.|++-|.-. +.+++..++.+|..+....  ...+.+|   +..+|..|+
T Consensus       345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~--~~~i~~h---l~sLI~~LL  412 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA--PELISEH---LSSLIPRLL  412 (415)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC--HHHHHHH---HHHHHHHHH
Confidence            999999886554433334 34788888888765 7789999999999888754  3333332   455555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.38  E-value=5.3  Score=36.65  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCchHHHH-H-hcCchHHHHHHhhcc-----c------chhHHHHHHHHHHHHhcCHhhHHHH
Q 040073          243 SQQASKAALKLLVELCPWGRNRIKA-V-EGGGVSVLVDLLLDV-----T------ERRVCELMLNVLDLLCRCAEGRAEL  309 (407)
Q Consensus       243 ~~~~~~~A~~aL~~L~~~~~n~~~~-v-~~G~v~~Lv~lL~~~-----~------~~~~~~~al~~L~~L~~~~~~r~~i  309 (407)
                      +++.++.|+.-|..--..-++-..+ - .-|.+..|++=+-+-     +      ..+-.-+|++.|..+|.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            5677887776666544333333333 2 358888877655442     0      1233468888899999999999999


Q ss_pred             HhccCchHHHHHHHHcCC-----chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          310 LKHGAGLAVVSKKILRVS-----HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       310 ~~~~g~i~~Lv~~l~~~s-----~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      ++ +...-.|.-+|...+     +-.+-.+++++..+.+. .+.++..-..+...+|.-+..|+. |++..|-.|.-+++
T Consensus        88 l~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~-d~~evi~fLl~tEiiplcLr~me~-GselSKtvAtfIlq  164 (262)
T PF04078_consen   88 LK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT-DDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVATFILQ  164 (262)
T ss_dssp             HH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHHHHHH
T ss_pred             HH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcC-CcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            98 443333444343333     23467788899999974 456788888899999999999986 59999999999886


Q ss_pred             HH
Q 040073          385 LN  386 (407)
Q Consensus       385 ~l  386 (407)
                      .+
T Consensus       165 KI  166 (262)
T PF04078_consen  165 KI  166 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.37  E-value=2.1  Score=45.32  Aligned_cols=90  Identities=16%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073          156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l  235 (407)
                      ..+..|++.+..+-     -.+++.    .+++.+.+++.+++..+|..|+-++..+-..+..   ...+.|.+..+..+
T Consensus       107 ~iR~~AlR~ls~l~-----~~el~~----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l  174 (757)
T COG5096         107 EIRGFALRTLSLLR-----VKELLG----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKEL  174 (757)
T ss_pred             HHHHHHHHHHHhcC-----hHHHHH----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHH
Confidence            45777777765543     134443    2799999999999999999999999999654432   34446888889999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                      +.+.   ++.+..+|+.+|..+...
T Consensus       175 ~~D~---dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         175 VADS---DPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhCC---CchHHHHHHHHHHHhchh
Confidence            9888   999999999999988653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=93.24  E-value=7.4  Score=39.59  Aligned_cols=267  Identities=13%  Similarity=0.075  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcH--HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAI--EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLES  189 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i--~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~  189 (407)
                      ..+++++..+.+.+.. ......+...+.|  .....-++.+.+ ..++-.|+.+|.+-...-.++-..=.+.+ .++..
T Consensus       149 ~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~-~avRLaaL~aL~dsl~fv~~nf~~E~erN-y~mqv  225 (858)
T COG5215         149 SGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETT-SAVRLAALKALMDSLMFVQGNFCYEEERN-YFMQV  225 (858)
T ss_pred             HhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHhhcchhhhc-hhhee
Confidence            6678899999998865 2333444444432  223333333333 34688888888772211111111111111 24555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-c-----
Q 040073          190 LMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-R-----  262 (407)
Q Consensus       190 Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~-----  262 (407)
                      .++.-+.++.+++..|-.+|..+... .+..+..++. -....+.+.+++.   ++++...|...-.-+|..+ +     
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~---nd~va~qavEfWsticeEeid~~~e~  301 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQ---NDEVAIQAVEFWSTICEEEIDGEMED  301 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            66777788999999999999887543 3344444443 3344455677777   8887777765443333210 0     


Q ss_pred             ---------h--HHHHHhcCchHHHHHHhhcc-c-----chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH--
Q 040073          263 ---------N--RIKAVEGGGVSVLVDLLLDV-T-----ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI--  323 (407)
Q Consensus       263 ---------n--~~~~v~~G~v~~Lv~lL~~~-~-----~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l--  323 (407)
                               |  -....-..++|.|+.+|... +     +=+.-..|...|...+..-  ...+++      +...++  
T Consensus       302 ~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~------pVl~FvEq  373 (858)
T COG5215         302 KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMR------PVLGFVEQ  373 (858)
T ss_pred             hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHH------HHHHHHHH
Confidence                     1  11111235789999999763 1     1133344444444443311  112333      223322  


Q ss_pred             --HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC--CCCC
Q 040073          324 --LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRD--SPCV  396 (407)
Q Consensus       324 --~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~--~~~~  396 (407)
                        ...+-..+|.|+.++..+..+ ++..++..++ ..++|-+...+. +..--+|..++|-+..++.+...  +||.
T Consensus       374 ni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V-~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~  447 (858)
T COG5215         374 NIRSESWANREAAVMAFGSVMHG-PCEDCLTKIV-PQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG  447 (858)
T ss_pred             hccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhH-HhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc
Confidence              233456789999999998875 4444444444 367877777665 77888999999999999987653  4664

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.18  E-value=2.5  Score=36.65  Aligned_cols=108  Identities=20%  Similarity=0.267  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL  236 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL  236 (407)
                      ++.+++.+++.|+..-+   . +.+.   .++.+...|+++++.+|..|..+|..|...+-    +-..+..+..++.++
T Consensus         4 vR~n~i~~l~DL~~r~~---~-~ve~---~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l   72 (178)
T PF12717_consen    4 VRNNAIIALGDLCIRYP---N-LVEP---YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHhCc---H-HHHh---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHH
Confidence            57888888888875433   2 3333   68999999999999999999999999976532    222223347777888


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhc
Q 040073          237 RDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLD  282 (407)
Q Consensus       237 ~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~  282 (407)
                      .+.   +++++..|..++..+... .++  .+  ...++.++..|..
T Consensus        73 ~D~---~~~Ir~~A~~~~~e~~~~~~~~--~i--~~~~~e~i~~l~~  112 (178)
T PF12717_consen   73 VDE---NPEIRSLARSFFSELLKKRNPN--II--YNNFPELISSLNN  112 (178)
T ss_pred             cCC---CHHHHHHHHHHHHHHHHhccch--HH--HHHHHHHHHHHhC
Confidence            888   999999999999998875 222  22  1235555555554

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.11  E-value=0.094  Score=38.07  Aligned_cols=43  Identities=30%  Similarity=0.494  Sum_probs=32.7

Q ss_pred             cCccccccCc----Cceec-CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073           11 LCPISLQLMR----DPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus        11 ~Cpi~~~~~~----dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      +||-|+.-|.    =||.- -|.|.|--+||.+|+..  ...||.++|+.
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w   80 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTW   80 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCcee
Confidence            6777776551    13433 59999999999999976  67899999875

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.11  E-value=0.2  Score=29.75  Aligned_cols=30  Identities=27%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhcc
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV  215 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~  215 (407)
                      .+|.++++++++++++|..|+.+|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK14707 hypothetical protein; Provisional

Probab=92.92  E-value=21  Score=42.04  Aligned_cols=269  Identities=19%  Similarity=0.143  Sum_probs=141.1

Q ss_pred             HHHHHHHhcC-CC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073          100 IVKILNDAKK-SP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS  177 (407)
Q Consensus       100 i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  177 (407)
                      |.-++.-++. ++ .....++..|..+...++..+..+ ..-+|..+++-+....+... ..+|+..|...-.++.....
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~-c~~aa~~la~~l~~~~~l~~  242 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPD-CGNAVSALAERLADESRLRN  242 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHcCcHHHHH
Confidence            3344444442 22 555666776666554445555555 44457778888887666433 78888877764444444555


Q ss_pred             HhhccchhhHHHHHHHHhc-CChhHHHHHHHHHH-HhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH-
Q 040073          178 IVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLK-SIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL-  254 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL-  254 (407)
                      .+...   .+...+..|+. .+.....+|+.+|. .++.+..-.+ -+...+ +.-.++-|...  .+..+-..|+..| 
T Consensus       243 ~~~~q---~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~-al~~q~-vanalNalSKw--pd~~vc~~Aa~~la  315 (2710)
T PRK14707        243 ELKPQ---ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK-ALDPIN-VTQALNALSKW--ADLPVCAEAAIALA  315 (2710)
T ss_pred             hCChH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH-hcCHHH-HHHHHhhhhcC--CCchHHHHHHHHHH
Confidence            55433   36666677765 55556666666665 4554333332 333233 45555555544  2444444444444 


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH-HHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL-DLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASD  332 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L-~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e  332 (407)
                      ..|.....-++. ++.-.+...+.-|..=++..+...|+.+| ..|+..++-+..+ + ..|+...+.-+.+.. .....
T Consensus       316 ~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~-~q~~a~~lNalsKWp~~~~c~  392 (2710)
T PRK14707        316 ERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-E-PQGVSSVLNALSKWPDTPVCA  392 (2710)
T ss_pred             HHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-c-hhHHHHHHhhhhcCCCchHHH
Confidence            455553333332 33323455555554433444444444444 4777766666554 3 356777777776653 33344


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                      .|+..|..=..+  +.+ ..+..+..++..++.-|...++..+...|+..|
T Consensus       393 ~aa~~LA~~l~~--d~~-l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        393 AAASALAEHVVD--DLE-LRKGLDPQGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             HHHHHHHHHhcc--Chh-hhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            444444333322  222 334444455666666666555555555555543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.68  E-value=9.2  Score=36.14  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             HHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhh--
Q 040073          146 TIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLIS--  223 (407)
Q Consensus       146 ~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--  223 (407)
                      ..+.+.+.  .+++.|+..|+..+.-+.   +... .   .++.+...++.++..++..|..+|..+.........-.  
T Consensus        34 P~v~~~~~--~vR~~al~cLGl~~Lld~---~~a~-~---~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~  104 (298)
T PF12719_consen   34 PAVQSSDP--AVRELALKCLGLCCLLDK---ELAK-E---HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES  104 (298)
T ss_pred             HHhcCCCH--HHHHHHHHHHHHHHHhCh---HHHH-H---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence            33444444  579999999999887653   2222 2   58888888888899999999999998865433211111  


Q ss_pred             ------chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHH
Q 040073          224 ------VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLN  294 (407)
Q Consensus       224 ------~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~  294 (407)
                            .....++.+.+.+.+.   +++++..|+..+..|-.......   ....+..|+-+-.+..   +..++ .+++
T Consensus       105 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr-Q~L~  177 (298)
T PF12719_consen  105 DNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR-QCLS  177 (298)
T ss_pred             ccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH-HHHH
Confidence                  1135777888888888   99999999999999876544222   1234445544443321   23333 3333


Q ss_pred             H-HHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc----h---hhHHHHHHHHHHhcc
Q 040073          295 V-LDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH----A---ASDRAVRILCSVCKF  344 (407)
Q Consensus       295 ~-L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~----~---~~e~a~~~L~~l~~~  344 (407)
                      . +-..+. +..++..+.+  +.+|.+-.+......    .   .-......+..++..
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~~--~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~  234 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLAE--AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP  234 (298)
T ss_pred             HHHHHHHcCCHHHHHHHHH--HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence            3 345555 4445555544  467776664433221    1   133445566666653

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.66  E-value=0.87  Score=37.98  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..+.+.|...++..+-.|+.+|-.+.++++. .+..++.+.+.+..|+.++.....+.+|+++..+++.-.......|
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP  120 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            456778888778899999999999999988765 4788888889999999999866789999999999988777665554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.40  E-value=3  Score=42.02  Aligned_cols=152  Identities=18%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCHh
Q 040073          228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAE  304 (407)
Q Consensus       228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~~  304 (407)
                      ....+.+++.++   +...+..|+..|..|+....-...+++..++..|.+++.++.   ..++...++.++..+-.++-
T Consensus        84 ~a~~i~e~l~~~---~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv  160 (713)
T KOG2999|consen   84 YAKRIMEILTEG---NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV  160 (713)
T ss_pred             HHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence            356678888888   888888899999999998888899999999999999998873   34566667777776665443


Q ss_pred             hHHHHHhccCchHHHHHHH--HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHH
Q 040073          305 GRAELLKHGAGLAVVSKKI--LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREI  382 (407)
Q Consensus       305 ~r~~i~~~~g~i~~Lv~~l--~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~l  382 (407)
                      .-...+.. .+|...+.+.  .......-..|+..|-++..++..  ...-+.+.--+..|+..++.. +.+....|-.+
T Consensus       161 vsW~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~--~~~~v~eev~i~~li~hlq~~-n~~i~~~aial  236 (713)
T KOG2999|consen  161 VSWESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT--LRQLVAEEVPIETLIRHLQVS-NQRIQTCAIAL  236 (713)
T ss_pred             eeeeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH--HHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHH
Confidence            22222221 2333333322  223456678899999999886543  466666778899999999954 66666667777


Q ss_pred             HHHH
Q 040073          383 LKLN  386 (407)
Q Consensus       383 L~~l  386 (407)
                      +..+
T Consensus       237 ~nal  240 (713)
T KOG2999|consen  237 LNAL  240 (713)
T ss_pred             HHHH
Confidence            7554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.39  E-value=1.3  Score=40.76  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH-HhcCHhhHHHHHhccCchHHHH
Q 040073          243 SQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL-LCRCAEGRAELLKHGAGLAVVS  320 (407)
Q Consensus       243 ~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~-L~~~~~~r~~i~~~~g~i~~Lv  320 (407)
                      +......|+..|--++. +++.+..+.+..++..|+.+|....++.++..++.+|.. |..++.+.+.+-+ .+|+..++
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~  182 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVC  182 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHH
Confidence            34456778899998888 667888888899999999999554367788888888774 4557788777766 67899999


Q ss_pred             HHHHcC--CchhhHHHHHHHHHHhcc
Q 040073          321 KKILRV--SHAASDRAVRILCSVCKF  344 (407)
Q Consensus       321 ~~l~~~--s~~~~e~a~~~L~~l~~~  344 (407)
                      .++.+.  +...+-.++..|+-....
T Consensus       183 ~llk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  183 SLLKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HHHccccccHHHhHHHHHHHHHHHcc
Confidence            977654  366777788888877764

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.32  E-value=0.74  Score=39.13  Aligned_cols=143  Identities=19%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             HHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-h
Q 040073          187 LESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-N  263 (407)
Q Consensus       187 i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n  263 (407)
                      ++.++..|..  .+.++|..+.-++..+.   +..+..+.. -+-+.+-.++..+   +.+....+..+|..|-.... -
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHH
Confidence            5566666653  68889999988888873   222222221 1222333344443   44467778888888776544 3


Q ss_pred             HHH-HHhcCchHHHHHHhh--cccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-ch-hhHHHHHHH
Q 040073          264 RIK-AVEGGGVSVLVDLLL--DVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HA-ASDRAVRIL  338 (407)
Q Consensus       264 ~~~-~v~~G~v~~Lv~lL~--~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~-~~e~a~~~L  338 (407)
                      ... +...|.++.++.++.  .. +..+...++.+|..-|.....|..|..+  |++.|-+...... +. .+..|+-+|
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~~--~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISKN--YVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHHH--CHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHHHHccccchHHHHHHHHHHH
Confidence            333 456899999999998  43 6788889999999988888888877774  6787777543333 33 466665555


Q ss_pred             H
Q 040073          339 C  339 (407)
Q Consensus       339 ~  339 (407)
                      .
T Consensus       155 ~  155 (157)
T PF11701_consen  155 C  155 (157)
T ss_dssp             H
T ss_pred             h
Confidence            4

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=92.24  E-value=0.067  Score=36.52  Aligned_cols=39  Identities=18%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQ   53 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~   53 (407)
                      +.|.||.|++-|...       .+.+.+.++...+.....||+|..
T Consensus         1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence            479999998833222       455555555554333577999965

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.21  E-value=0.064  Score=38.56  Aligned_cols=50  Identities=24%  Similarity=0.369  Sum_probs=36.5

Q ss_pred             CCCcccCccccccCcC-ceec-CCcccccHHHHHHHHhcCCC-CCCccccccc
Q 040073            6 VPAHFLCPISLQLMRD-PVTV-STGITYDRVNIERWLFTCKN-NTCPVTKQVL   55 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~d-Pv~~-~~g~t~~r~~i~~~~~~~~~-~~cP~~~~~~   55 (407)
                      +|-+-+||-|.-.=.| |.++ -|-|.|-+.||.+|+....+ ..||-|+|..
T Consensus        28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            4555677777644444 5555 59999999999999976433 6799999875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.20  E-value=3.9  Score=44.99  Aligned_cols=229  Identities=13%  Similarity=0.050  Sum_probs=130.9

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHh---hhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-----
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSIT---LQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNV-----  170 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~---~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-----  170 (407)
                      +|.++..+..+. .+|..|+..|..+.   ++-+..-..+.-.-.+|.|-.++.+..... ++-.-+.-|..||.     
T Consensus       464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~-vRiayAsnla~LA~tA~rF  542 (1431)
T KOG1240|consen  464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQI-VRIAYASNLAQLAKTAYRF  542 (1431)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccce-ehhhHHhhHHHHHHHHHHH
Confidence            344444455555 88888888888764   232333334444556788888887743311 12211112222211     


Q ss_pred             -------------ChhHH-----------HhHhhccchhhHH-HHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch
Q 040073          171 -------------SESYL-----------KSIVINNGEEFLE-SLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK  225 (407)
Q Consensus       171 -------------~~~~~-----------~~~i~~~gg~~i~-~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~  225 (407)
                                   ++.++           ...+.    +.++ ..+.+|..+++-+|..-...|..|+..=-   +....
T Consensus       543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ksN  615 (1431)
T KOG1240|consen  543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALH----HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKSN  615 (1431)
T ss_pred             HHHHHHHHhcccccCcccccccccccchHHHHHH----HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcccc
Confidence                         11111           00011    1233 33455555555677666666666653210   01111


Q ss_pred             hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh
Q 040073          226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG  305 (407)
Q Consensus       226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~  305 (407)
                      .=.++.|+.+|++.   +...+-+-...|..++..-.-  +-++++.+|.|.+-|.++ .+.+...|+..|..|+..+--
T Consensus       616 D~iLshLiTfLNDk---Dw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll  689 (1431)
T KOG1240|consen  616 DVILSHLITFLNDK---DWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLL  689 (1431)
T ss_pred             cchHHHHHHHhcCc---cHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhccc
Confidence            12678899999888   888887777777766553222  226778899999999887 788999999999999987655


Q ss_pred             HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          306 RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       306 r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      |+..+-+  .+....-+|-..+.-.+..++.++..+...
T Consensus       690 ~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  690 RKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             chHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            4443331  122222223444667788888988888764

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.15  E-value=2.7  Score=39.01  Aligned_cols=177  Identities=17%  Similarity=0.175  Sum_probs=106.2

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccC
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVA  216 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~  216 (407)
                      ...+..++.......  +-=++.+++.+..+.... ..+...+++....+..++..    .+...+.-+.+++.|+-.+.
T Consensus        65 ~~~~~~~~~~Wp~~~--~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~  141 (268)
T PF08324_consen   65 LILLLKILLSWPPES--RFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP  141 (268)
T ss_dssp             HHHHHHHHCCS-CCC---HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCCcc--chhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC
Confidence            455566666665533  777888888888877543 44444331124555555543    46777889999999998888


Q ss_pred             Cchhhhhchhh-hHHHHHHHcccCCCC---CHHHHHHHHHHHHHhCCCCc-hH-HHHHhcCchHHHHHHhhc-ccchhHH
Q 040073          217 DPFQLISVKQE-FFTEIVNVLRDHHQF---SQQASKAALKLLVELCPWGR-NR-IKAVEGGGVSVLVDLLLD-VTERRVC  289 (407)
Q Consensus       217 ~~~~~i~~~~g-~i~~Lv~lL~~~~~~---~~~~~~~A~~aL~~L~~~~~-n~-~~~v~~G~v~~Lv~lL~~-~~~~~~~  289 (407)
                      ..+..+....+ .+...+..+...  .   +..++.+++..++|++..-- ++ ..-.....+..+++.+.. ..+.+..
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~  219 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSS--LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEAL  219 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTT--S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhc--cccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHH
Confidence            87777766544 344444433332  1   56788888999999986211 11 000111235555564332 2378888


Q ss_pred             HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH
Q 040073          290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI  323 (407)
Q Consensus       290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l  323 (407)
                      -+++.+|.+|...+......... -++...+...
T Consensus       220 ~R~LvAlGtL~~~~~~~~~~~~~-l~~~~~~~~~  252 (268)
T PF08324_consen  220 YRLLVALGTLLSSSDSAKQLAKS-LDVKSVLSKK  252 (268)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHCCC-CTHHHHHHHH
T ss_pred             HHHHHHHHHHhccChhHHHHHHH-cChHHHHHHH
Confidence            99999999999777666655542 3455554434

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.13  E-value=1.1  Score=37.56  Aligned_cols=79  Identities=20%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..|.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.....+.+|+++..+++..+....+.|
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~  116 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP  116 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            456777878777899999999999999998875 4888888889999999999865789999999999988777666554

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.09  E-value=1.1  Score=38.47  Aligned_cols=111  Identities=21%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .+..+..+|++++.+.|-.++..+.........-.......-.+..|+.+|+..  .+..+.+.+..+|..|...-.+..
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~--~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP--DPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhcCCC
Confidence            577788899999999999999999988765433222222233888999999876  266778888888777655333333


Q ss_pred             HHHhc-------CchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          266 KAVEG-------GGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       266 ~~v~~-------G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .+.++       +.++.+++++.+   ....+.++.+|..+-.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence            33322       233444444432   3556677777776644

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=91.99  E-value=0.074  Score=46.96  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073           10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQ   53 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~   53 (407)
                      .+|||+.+....|++. .|.|.|+|..|.+++...-...||.-..
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~C  234 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLIC  234 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhc
Confidence            4899999999999866 4999999999999986322577886443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=91.96  E-value=0.27  Score=29.15  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=25.0

Q ss_pred             hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      .+|.++++++++   +++++.+|+.+|.+++.
T Consensus         1 llp~l~~~l~D~---~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP---SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S---SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC---CHHHHHHHHHHHHHHHh
Confidence            478899999998   99999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.92  E-value=8.9  Score=38.17  Aligned_cols=143  Identities=17%  Similarity=0.231  Sum_probs=100.0

Q ss_pred             HHHHcccCCCCCHHHHHHHHHHHHHhCCCCc----hHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhc
Q 040073          232 IVNVLRDHHQFSQQASKAALKLLVELCPWGR----NRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCR  301 (407)
Q Consensus       232 Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~----n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~  301 (407)
                      +..+++.+   +++-+-+|+-..-.++.+++    ||+.+.++=+++-+-.+|.+++      +.-.+.-++.+|...|.
T Consensus        16 ~~~L~~~k---~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   16 CLKLLKGK---RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             HHHHhccc---ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            55566665   77777777777778887665    8888999888999999997752      33446678888998888


Q ss_pred             CHhh--HHHHHhccCchHHHHHHHHcCC-ch------hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCC
Q 040073          302 CAEG--RAELLKHGAGLAVVSKKILRVS-HA------ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDAS  372 (407)
Q Consensus       302 ~~~~--r~~i~~~~g~i~~Lv~~l~~~s-~~------~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~  372 (407)
                      .++-  ..++++   .||.|...|..+. +.      .-+.+-.+|..++.....   ....+..|+++.+..+-..++-
T Consensus        93 ~pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G---~~~Lia~G~~~~~~Q~y~~~~~  166 (698)
T KOG2611|consen   93 VPELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG---LMTLIASGGLRVIAQMYELPDG  166 (698)
T ss_pred             ChhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch---hHHHHhcCchHHHHHHHhCCCC
Confidence            7752  345554   4899999887653 22      467788899999987554   6777889999999866443333


Q ss_pred             HHHHHHHHHHH
Q 040073          373 VKTKERAREIL  383 (407)
Q Consensus       373 ~~~k~~A~~lL  383 (407)
                      .....-|-.++
T Consensus       167 ~~d~alal~Vl  177 (698)
T KOG2611|consen  167 SHDMALALKVL  177 (698)
T ss_pred             chhHHHHHHHH
Confidence            33333333333

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.78  E-value=1.1  Score=34.77  Aligned_cols=67  Identities=22%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      .+++++..+...+..+|..|+.+|.+++....... +.....++..|.+++.+.   ++.++.. +..|-+|
T Consensus        28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~---d~~Vr~~-a~~Ld~l   94 (97)
T PF12755_consen   28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP---DENVRSA-AELLDRL   94 (97)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC---chhHHHH-HHHHHHH
Confidence            78999999999999999999999999986654322 222346888899999876   6665554 4555544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=91.71  E-value=1.5  Score=36.08  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhccC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV--DASVKTKERAREILKLNARAWRD  392 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~k~~A~~lL~~l~~~~~~  392 (407)
                      ++..|-+.|...++..+-.|+.+|-.+..+++. .+..++.....+..|+.++..  ...+.+|+++..+++........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            355677778778899999999999999988765 367777777888889999875  35889999999999988887766


Q ss_pred             C
Q 040073          393 S  393 (407)
Q Consensus       393 ~  393 (407)
                      +
T Consensus       117 ~  117 (133)
T cd03561         117 H  117 (133)
T ss_pred             C
Confidence            5

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.52  E-value=14  Score=35.63  Aligned_cols=197  Identities=11%  Similarity=0.064  Sum_probs=131.3

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh------hhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ------LISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~------~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      .+..|+..|..-+.+.|..++.+..++.....+..      .+... ..++..|+.-.+     ++++.-.+-..|+...
T Consensus        77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-----~~dial~~g~mlRec~  151 (335)
T PF08569_consen   77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-----NPDIALNCGDMLRECI  151 (335)
T ss_dssp             HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-----STTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-----CccccchHHHHHHHHH
Confidence            78899999999999999999999999876543221      12222 233333333332     4566667777888888


Q ss_pred             CCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH-hcCHhhHHHHHhcc--CchHHHHHHHHcCCchhhHHHH
Q 040073          259 PWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL-CRCAEGRAELLKHG--AGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-~~~~~~r~~i~~~~--g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      .++.-.+.+.+...+..+.+.+... +=++...|..++..| ..+..--.+.....  ..+....++|.+.+-.++..++
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence            8877777788877888888887765 668889999999974 55555444454432  2233444444445678899999


Q ss_pred             HHHHHHhccCCchHHHHH-HHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          336 RILCSVCKFSATARVLQE-MLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       336 ~~L~~l~~~~~~~~~~~~-~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..|..+-....+-.+... +-+..-+..++.+|+ +.+...+-.|..+.|.+...
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhC
Confidence            999999976666444333 334455666666776 56999999999999998763

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.88  E-value=8.7  Score=41.92  Aligned_cols=259  Identities=15%  Similarity=0.144  Sum_probs=138.5

Q ss_pred             HHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcC
Q 040073          118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCG  197 (407)
Q Consensus       118 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~  197 (407)
                      -.+|-.+.+.+.+|...+.++.++..++.++-++..    +...+.++..|-..+.  +++ ..   +-+-.+|..|++|
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflindeh----RSslLrivscLitvdp--kqv-hh---qelmalVdtLksg  732 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLINDEH----RSSLLRIVSCLITVDP--KQV-HH---QELMALVDTLKSG  732 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeechHH----HHHHHHHHHHHhccCc--ccc-cH---HHHHHHHHHHHhc
Confidence            457788889999999999998888887777744322    3333444443332221  221 11   1355677777763


Q ss_pred             C------------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc--C--C--C-CCH----HHHHHHHHHH
Q 040073          198 N------------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD--H--H--Q-FSQ----QASKAALKLL  254 (407)
Q Consensus       198 ~------------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--~--~--~-~~~----~~~~~A~~aL  254 (407)
                      -            .+.......+++.+-..+...+..+..+|++..|...|..  +  +  + .+.    +..+.-.+..
T Consensus       733 mvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlf  812 (2799)
T KOG1788|consen  733 MVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLF  812 (2799)
T ss_pred             ceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHH
Confidence            2            1233455666777655444444443334556666665531  0  0  0 011    1111111111


Q ss_pred             -HHhCCCCchHHHHHhcCchHHHHHHhhcc-----------------------cchhHHH--HHHHHHHHHhc-------
Q 040073          255 -VELCPWGRNRIKAVEGGGVSVLVDLLLDV-----------------------TERRVCE--LMLNVLDLLCR-------  301 (407)
Q Consensus       255 -~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-----------------------~~~~~~~--~al~~L~~L~~-------  301 (407)
                       ..+|.+..|++.+-..=--+.+.++|...                       ..+.+..  .|+...-.+-.       
T Consensus       813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt  892 (2799)
T KOG1788|consen  813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT  892 (2799)
T ss_pred             HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence             12233445554432111111122222211                       0111111  12222222210       


Q ss_pred             ----CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc--CCCHHH
Q 040073          302 ----CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV--DASVKT  375 (407)
Q Consensus       302 ----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~  375 (407)
                          ....+++|.. .|.+..++.+++...++.+-.-+..|..+++.++..  .+..-..|+++.|++++--  .++.--
T Consensus       893 PsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfn--aelltS~gcvellleIiypflsgsspf  969 (2799)
T KOG1788|consen  893 PSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN--AELLTSAGCVELLLEIIYPFLSGSSPF  969 (2799)
T ss_pred             CCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc--hhhhhcccHHHHHHHHhhhhhcCCchH
Confidence                1123556666 678999999998888999988999999999977653  4444467999999888632  134445


Q ss_pred             HHHHHHHHHHHHhh
Q 040073          376 KERAREILKLNARA  389 (407)
Q Consensus       376 k~~A~~lL~~l~~~  389 (407)
                      -..|.+++.+|.-+
T Consensus       970 LshalkIvemLgay  983 (2799)
T KOG1788|consen  970 LSHALKIVEMLGAY  983 (2799)
T ss_pred             hhccHHHHHHHhhc
Confidence            67788888888763

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.87  E-value=16  Score=39.88  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073          227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR  306 (407)
Q Consensus       227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r  306 (407)
                      +++..|...|++.   +..++..|++-+..+....+  ..+++. +|...++++....+....-.++-+|+.|+.-+=-.
T Consensus       341 ~vie~Lls~l~d~---dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  341 FVIEHLLSALSDT---DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHhccCC---cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            6788888888888   89999999999999988655  444443 57777787766544566678888999998744222


Q ss_pred             HHHHhccCchHHHHHHHHc--------CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH-HHHhcCCCHHHHH
Q 040073          307 AELLKHGAGLAVVSKKILR--------VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC-LVLQVDASVKTKE  377 (407)
Q Consensus       307 ~~i~~~~g~i~~Lv~~l~~--------~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll-~ll~~~~~~~~k~  377 (407)
                      -....  ..+|.+++.+.-        .+...++.|+-+.|.+++......+.. .++ ..+..|+ ..+- +.+-..|+
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlF-DrevncRR  489 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALF-DREVNCRR  489 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhc-CchhhHhH
Confidence            22222  246666664421        136789999999999998654322222 222 1222232 2233 44667777


Q ss_pred             HHHHHHHH
Q 040073          378 RAREILKL  385 (407)
Q Consensus       378 ~A~~lL~~  385 (407)
                      .|+++++-
T Consensus       490 AAsAAlqE  497 (1133)
T KOG1943|consen  490 AASAALQE  497 (1133)
T ss_pred             HHHHHHHH
Confidence            77776654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.87  E-value=13  Score=38.25  Aligned_cols=135  Identities=18%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ......++...+++...+.-|..-|....++=|+..+.     +|..++.|.++.+.  .++..|+..|-.+|.++.   
T Consensus        22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~--~iR~~aik~lp~~ck~~~---   91 (556)
T PF05918_consen   22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV--QIRKQAIKGLPQLCKDNP---   91 (556)
T ss_dssp             HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH--HHHHHHHHHGGGG--T-----
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--HHHHHHHHhHHHHHHhHH---
Confidence            34555666655655466666777777776665655444     46778888886665  569999999999997643   


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cCCCCCHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DHHQFSQQASKAALKL  253 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~~~A~~a  253 (407)
                      +.+..    +...|+++|.+.+......+-.+|..|...+.        .+.+..|...+.   ++   +..+++.++..
T Consensus        92 ~~v~k----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~---de~~Re~~lkF  156 (556)
T PF05918_consen   92 EHVSK----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSG---DEQVRERALKF  156 (556)
T ss_dssp             T-HHH----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS----HHHHHHHHHH
T ss_pred             HHHhH----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccC---chHHHHHHHHH
Confidence            44432    57889999999888888888888887764432        234455555444   55   67788888877


Q ss_pred             HHH
Q 040073          254 LVE  256 (407)
Q Consensus       254 L~~  256 (407)
                      |..
T Consensus       157 l~~  159 (556)
T PF05918_consen  157 LRE  159 (556)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=0.15  Score=48.45  Aligned_cols=33  Identities=27%  Similarity=0.564  Sum_probs=31.3

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFT   42 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~   42 (407)
                      ..|.+++..|.|||-+..|-.||-..|-.|++.
T Consensus        41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk   73 (518)
T KOG0883|consen   41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK   73 (518)
T ss_pred             hhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence            489999999999999999999999999999986

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.82  E-value=1.7  Score=35.75  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=64.0

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK-TKERAREILKLNARAWRDS  393 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~-~k~~A~~lL~~l~~~~~~~  393 (407)
                      ++..|-+.|...++..+-.|+.+|-.+..+++. .+..++.+.+.+..|..++....+.. +|+++..++..-.....+.
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~  116 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            355677778777899999999999999988765 47788888899999999888654444 9999999998877776655


Q ss_pred             CC
Q 040073          394 PC  395 (407)
Q Consensus       394 ~~  395 (407)
                      |-
T Consensus       117 ~~  118 (133)
T smart00288      117 PD  118 (133)
T ss_pred             CC
Confidence            53

Unpublished observations. Domain of unknown function.

>PRK14707 hypothetical protein; Provisional

Probab=90.68  E-value=42  Score=39.77  Aligned_cols=282  Identities=15%  Similarity=0.085  Sum_probs=161.5

Q ss_pred             CCCCCChhhHHHHHHHhcC-CC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh-
Q 040073           91 PQPPVDKTQIVKILNDAKK-SP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH-  167 (407)
Q Consensus        91 ~~~~~~~~~i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~-  167 (407)
                      .+..++...|..++.-++. ++ .....++..|.....+.... .+-.+.-.+-..++.|....+. .++.+|+..|.. 
T Consensus       198 ~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l-~~~~~~q~va~~lN~lsKwp~~-~~C~~a~~~lA~r  275 (2710)
T PRK14707        198 LRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL-RNELKPQELGNALNALSKWADT-PVCAAAASALAER  275 (2710)
T ss_pred             hhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH-HHhCChHHHHHHHHHHhcCCCc-hHHHHHHHHHHHH
Confidence            3456778888888888764 33 66777888887765554444 3334444577777888877663 358888877764 


Q ss_pred             cCCChhHHHhHhhccchhhHHHHHHHHhc-CChhH-HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH
Q 040073          168 LNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQS-RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ  245 (407)
Q Consensus       168 L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  245 (407)
                      +. .+...++.+...   -+.-.+.-|+. .+..+ +..|..+-..|....+-.. .....+ +.-+++-|.... -+..
T Consensus       276 l~-~~~~l~~al~~q---~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~-~~~~~~-~~~~LNalsKWp-d~~~  348 (2710)
T PRK14707        276 LV-DDPGLRKALDPI---NVTQALNALSKWADLPVCAEAAIALAERLADDPELCK-ALNARG-LSTALNALSKWP-DNPV  348 (2710)
T ss_pred             Hh-hhHHHHHhcCHH---HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh-ccchHH-HHHHHHHhhcCC-Cchh
Confidence            44 333445555433   25555555654 44444 4455555556765444333 333334 566667676540 1455


Q ss_pred             HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH-HHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073          246 ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD-LLCRCAEGRAELLKHGAGLAVVSKKIL  324 (407)
Q Consensus       246 ~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~-~L~~~~~~r~~i~~~~g~i~~Lv~~l~  324 (407)
                      +..+|...-..|+..++-++.+--.| |...+.-|..=++......++..|. .|..+.+-+..+-  ..+|..++.-+.
T Consensus       349 C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~--~Q~van~lnals  425 (2710)
T PRK14707        349 CAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD--PQGVSNALNALA  425 (2710)
T ss_pred             HHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc--hhhHHHHHHHhh
Confidence            66665555556777766666654344 5666655544335555555555555 6777777676653  457888888777


Q ss_pred             cC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Q 040073          325 RV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA-SVKTKERAREILKLNA  387 (407)
Q Consensus       325 ~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~l~  387 (407)
                      +. .......++..|..-..+  +.+.++. .+...|...+..|...+ ++..++.|..|...|.
T Consensus       426 KWPd~~~C~~aa~~lA~~la~--d~~l~~~-~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        426 KWPDLPICGQAVSALAGRLAH--DTELCKA-LDPINVTQALDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             cCCcchhHHHHHHHHHHHHhc--cHHHHhh-cChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence            65 344444455555444433  3334433 33333555666666554 5555555555555554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.66  E-value=0.18  Score=46.91  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             cCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073           11 LCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus        11 ~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      .||+|.+.|.--=    --+||+..||-|-..-.+. -+..||.|+..+++.
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~de   66 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDDE   66 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcccc
Confidence            3999999885321    2369998888885543332 367899999887653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.65  E-value=14  Score=35.54  Aligned_cols=194  Identities=15%  Similarity=0.164  Sum_probs=124.7

Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhH-----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073          101 VKILNDAKKSP-STGRKCLRRLRSITLQSERN-----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus       101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~-----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ..|+..|..=+ +.+..+......+.+.....     .+.+... .-..|..++...+.+ +..-.+-.+|.....++. 
T Consensus        79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~-dial~~g~mlRec~k~e~-  155 (335)
T PF08569_consen   79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENP-DIALNCGDMLRECIKHES-  155 (335)
T ss_dssp             HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGST-TTHHHHHHHHHHHTTSHH-
T ss_pred             HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCc-cccchHHHHHHHHHhhHH-
Confidence            34444444444 66666666666666553333     2333332 123333333333332 335666668888887765 


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhh--chhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLIS--VKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ..+++...+  .+..+....+.++-++...|..++..+...+... ....  ....++...-.+|.++   +--+++.++
T Consensus       156 l~~~iL~~~--~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~---NYvtkrqsl  230 (335)
T PF08569_consen  156 LAKIILYSE--CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS---NYVTKRQSL  230 (335)
T ss_dssp             HHHHHHTSG--GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S---SHHHHHHHH
T ss_pred             HHHHHhCcH--HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC---CeEeehhhH
Confidence            445555554  6888999999999999999999999875543321 2221  2234677778899888   999999999


Q ss_pred             HHHHHhCCCCchHHHHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          252 KLLVELCPWGRNRIKAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      ..|..|-.++.|...|..    ..-+..++.+|++. +..++-+|..++.....++
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence            999999999888776554    34577788888886 7899999999998776655

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.63  E-value=0.15  Score=48.15  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             ccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.|=||+.--+|=|++||-|. .|..|-+..--  .++.||+|++++..
T Consensus       291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE  337 (349)
T ss_pred             CeeEEEecCCcceEEecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence            589999999999999999998 78888777543  27789999998865

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.57  E-value=0.16  Score=38.80  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=23.9

Q ss_pred             CCcccccHHHHHHHHhcCCCCCCcccccc
Q 040073           26 STGITYDRVNIERWLFTCKNNTCPVTKQV   54 (407)
Q Consensus        26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~   54 (407)
                      .|.|.|--.||.+|++.  +..||.+.++
T Consensus        80 ~CNHaFH~hCisrWlkt--r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT--RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh--cCcCCCcCcc
Confidence            48999999999999986  7889999774

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.43  E-value=1.2  Score=36.95  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH---HHHHHHHHHHHHHhhcc
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK---TKERAREILKLNARAWR  391 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~---~k~~A~~lL~~l~~~~~  391 (407)
                      ++..|.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|..++.......   +|+++..+|+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~  121 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK  121 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence            355777888888899999999999999987754 47788888889999999888665555   89999999988887765


Q ss_pred             CCC
Q 040073          392 DSP  394 (407)
Q Consensus       392 ~~~  394 (407)
                      ..|
T Consensus       122 ~~~  124 (140)
T PF00790_consen  122 SDP  124 (140)
T ss_dssp             TST
T ss_pred             CCC
Confidence            444

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=90.14  E-value=8.8  Score=37.65  Aligned_cols=125  Identities=14%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             CCChhhHHHHHHHhc-CCC----hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh-ccCC-CCchHHHHHHHHH
Q 040073           94 PVDKTQIVKILNDAK-KSP----STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT-KSDA-GSDECDEALSILY  166 (407)
Q Consensus        94 ~~~~~~i~~ll~~L~-~~~----~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~-~~~~~~~a~~~L~  166 (407)
                      -+|.+.++..++.+- ...    ..-..|+..+..+...+|..-..+.++|.++.+++.+. .+-. +.++....-.+|.
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            355456666665553 221    44456888999999988999999999999999999998 4433 2334445555778


Q ss_pred             hcCCChhHHHhHhhccchhhHHHHHHHHhcCCh-------hHHHHHHHHHHHhhccCCchhh
Q 040073          167 HLNVSESYLKSIVINNGEEFLESLMRVLKCGNY-------QSRSYAIMLLKSIFEVADPFQL  221 (407)
Q Consensus       167 ~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~-------~~~~~a~~~L~~Ls~~~~~~~~  221 (407)
                      .+|.++...+.+. +.+  +++.+++++.+.+.       +.-...-..+-.|..+.+.-+.
T Consensus       181 AicLN~~Gl~~~~-~~~--~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~  239 (379)
T PF06025_consen  181 AICLNNRGLEKVK-SSN--PLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKP  239 (379)
T ss_pred             HHhcCHHHHHHHH-hcC--hHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHH
Confidence            8899987765554 444  89999999876321       2222333345556666554433

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.00  E-value=18  Score=38.19  Aligned_cols=146  Identities=15%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .+--++.+|++.+.+++.++..+...|....+.-. ++..  .=+.++.--..+..-+.+-++.-..+|...+..-+.  
T Consensus       318 l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved-iv~~--Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--  392 (948)
T KOG1058|consen  318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED-IVQF--LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--  392 (948)
T ss_pred             HHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH-HHHH--HHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--
Confidence            45566678888899999999998888875543211 1100  001111111111001345677778899988874332  


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh-cCHhhHHHHHhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhc
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC-RCAEGRAELLKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCK  343 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~-~~~~~r~~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~  343 (407)
                        +.+.+|+.|++.+.+. ++......+..+...- ..+.-|..++.      .|+..+-. .+.+.-+.|++++...|.
T Consensus       393 --~aatvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  393 --VAATVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASIIE------KLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             --HHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHHH------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence              3446799999999886 4444334444443322 23444544443      33332222 256777778888888886


Q ss_pred             cC
Q 040073          344 FS  345 (407)
Q Consensus       344 ~~  345 (407)
                      ..
T Consensus       464 ~~  465 (948)
T KOG1058|consen  464 GL  465 (948)
T ss_pred             hh
Confidence            43

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.97  E-value=2.3  Score=35.26  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+.+.+..|+.++..     .....+|++...+++.-+..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456777778777889999999999999988765 478888888999999999953     25789999999999887776


Q ss_pred             ccCCCC
Q 040073          390 WRDSPC  395 (407)
Q Consensus       390 ~~~~~~  395 (407)
                      +.+.|-
T Consensus       118 f~~~p~  123 (139)
T cd03567         118 LPHEPK  123 (139)
T ss_pred             hcccch
Confidence            654443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.74  E-value=26  Score=36.90  Aligned_cols=131  Identities=16%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             cHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHH
Q 040073           66 NHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFL  144 (407)
Q Consensus        66 n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~L  144 (407)
                      |..+|+++-.+......        .+|......+..++....+++ ..|.-|++.+..+-.+  .....     ...+|
T Consensus        62 dlelKKlvyLYl~nYa~--------~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey-----~~~Pl  126 (734)
T KOG1061|consen   62 DLELKKLVYLYLMNYAK--------GKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEY-----LCDPL  126 (734)
T ss_pred             CchHHHHHHHHHHHhhc--------cCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHH-----HHHHH
Confidence            45567776666554431        112122233445555555555 5566666655554322  11111     25677


Q ss_pred             HHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          145 ATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       145 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      .+.+++.++  .++..|+-....+=  + ...+.....|  .++.|.+++...++.+..+|..+|..+...+.+
T Consensus       127 ~~~l~d~~~--yvRktaa~~vakl~--~-~~~~~~~~~g--l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  127 LKCLKDDDP--YVRKTAAVCVAKLF--D-IDPDLVEDSG--LVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHhccCCCh--hHHHHHHHHHHHhh--c-CChhhccccc--hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence            777777766  33554444443332  2 2345666665  999999999988999999999999999766543

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.62  E-value=0.28  Score=46.35  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             ccCccccccCc------CceecCCcccccHHHHHHHHhcCCCCCCccccccc--cccCCCCCCccHHHHHHHHHH
Q 040073           10 FLCPISLQLMR------DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL--QETDLTSTTPNHTLRRLIQAW   76 (407)
Q Consensus        10 ~~Cpi~~~~~~------dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~--~~~~~~~l~~n~~l~~~I~~~   76 (407)
                      +.|=||.+.|.      -|-.+.||||+|..|+.+.+.. +...||.|+.+.  ....+..+..|+.+-..++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            45777776654      4667889999999999998865 367789999883  221122566788887777765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.61  E-value=18  Score=40.19  Aligned_cols=271  Identities=15%  Similarity=0.148  Sum_probs=144.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC-C---ChhHHH
Q 040073          102 KILNDAKKSPSTGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN-V---SESYLK  176 (407)
Q Consensus       102 ~ll~~L~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-~---~~~~~~  176 (407)
                      .-++.|+.. +.+.+|++-|+.++.. +++++-.    -++|-++.++.+...  +|+..|+.+|..+- .   -.....
T Consensus       429 s~IR~lk~~-~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a--~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  429 SCIRALKTI-QTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEA--DVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHhhhcc-hhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchH--HHHHHHHHHHHHHHhhccCCCcccc
Confidence            334444544 7789999999999865 3343322    258999999998776  56888888777532 2   112234


Q ss_pred             hHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccC------------------Cchhhh--h-------chhhh
Q 040073          177 SIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVA------------------DPFQLI--S-------VKQEF  228 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~------------------~~~~~i--~-------~~~g~  228 (407)
                      .++.+.   .+|.|-.++.. ....+|..-+..|..|+...                  .+....  .       .-...
T Consensus       502 niF~eY---lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  502 NIFPEY---LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             hhhHhh---hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            555543   68888888876 45555555555555554221                  111000  0       00011


Q ss_pred             HHHHH-HHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          229 FTEIV-NVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       229 i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      |..+| .+|.+.   ++-+++.-+..|.-||..      +.+++    .++-|+..|.+. |..++..-..-+.-++..-
T Consensus       579 V~~~v~sLlsd~---~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~V  648 (1431)
T KOG1240|consen  579 VEQMVSSLLSDS---PPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFV  648 (1431)
T ss_pred             HHHHHHHHHcCC---chHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEE
Confidence            22222 233333   344444445555555531      11111    344555555554 4444333333333222211


Q ss_pred             hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                       |.+. ++ ...+|.|.+-|.+..+.+-..|+.+|..|+...-   .++. .-...++-..-+|- +++.=.|+.+..++
T Consensus       649 -G~rs-~s-eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~-~v~~i~~~v~PlL~-hPN~WIR~~~~~iI  720 (1431)
T KOG1240|consen  649 -GWRS-VS-EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKP-AVKDILQDVLPLLC-HPNLWIRRAVLGII  720 (1431)
T ss_pred             -eeee-HH-HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchH-HHHHHHHhhhhhee-CchHHHHHHHHHHH
Confidence             1211 22 3456777777766667888999999999987432   1111 11123333333343 56888999998888


Q ss_pred             HHHHhhccCC--CCCCccc
Q 040073          384 KLNARAWRDS--PCVPAHL  400 (407)
Q Consensus       384 ~~l~~~~~~~--~~~~~~~  400 (407)
                      ....+.+..-  -|+-+-+
T Consensus       721 ~~~~~~ls~advyc~l~P~  739 (1431)
T KOG1240|consen  721 AAIARQLSAADVYCKLMPL  739 (1431)
T ss_pred             HHHHhhhhhhhheEEeehh
Confidence            7777765432  3654444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=89.47  E-value=8.3  Score=39.24  Aligned_cols=153  Identities=12%  Similarity=0.036  Sum_probs=93.7

Q ss_pred             CcHHHHHHHhhccCC---CC--chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073          139 GAIEFLATIITKSDA---GS--DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF  213 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~---~~--~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  213 (407)
                      .++|.|+++|.+.+.   +.  .+--.|...|...+.   ..+..+...   ++..+-.-+++++..-|+.|+.++.++.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p---Vl~FvEqni~~~~w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP---VLGFVEQNIRSESWANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH---HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence            478999999986322   00  012334444444332   223334332   4555566677889999999999999987


Q ss_pred             ccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc--cchhHHHH
Q 040073          214 EVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV--TERRVCEL  291 (407)
Q Consensus       214 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~  291 (407)
                      ..+......-.-..++|.+..++.+.   .--++..++|++..++.+-.  ..+-..|-++..++...-|  +.+....+
T Consensus       395 ~gp~~~~lT~~V~qalp~i~n~m~D~---~l~vk~ttAwc~g~iad~va--~~i~p~~Hl~~~vsa~liGl~D~p~~~~n  469 (858)
T COG5215         395 HGPCEDCLTKIVPQALPGIENEMSDS---CLWVKSTTAWCFGAIADHVA--MIISPCGHLVLEVSASLIGLMDCPFRSIN  469 (858)
T ss_pred             cCccHHHHHhhHHhhhHHHHHhcccc---eeehhhHHHHHHHHHHHHHH--HhcCccccccHHHHHHHhhhhccchHHhh
Confidence            65543222111135788888888766   77888999999999975321  1222245555544433322  14567778


Q ss_pred             HHHHHHHHhcC
Q 040073          292 MLNVLDLLCRC  302 (407)
Q Consensus       292 al~~L~~L~~~  302 (407)
                      +.+...+|..+
T Consensus       470 csw~~~nlv~h  480 (858)
T COG5215         470 CSWRKENLVDH  480 (858)
T ss_pred             hHHHHHhHHHh
Confidence            88888888764

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=89.45  E-value=23  Score=35.17  Aligned_cols=187  Identities=15%  Similarity=0.135  Sum_probs=112.3

Q ss_pred             hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc-ccC-CCCCHHHHHHHHHHHHHhCC-CC
Q 040073          186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL-RDH-HQFSQQASKAALKLLVELCP-WG  261 (407)
Q Consensus       186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~-~~~~~~~~~~A~~aL~~L~~-~~  261 (407)
                      .+..++.+..+ .+...+..++.++..|...-....   .-..++..+...+ ... +...+...+..+|....|.. ++
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            45566655544 456777777888877764411111   1123444454444 111 00134455555566565554 22


Q ss_pred             chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-Hhh-------------HHHHHhccCchHHHHHHHHcCC
Q 040073          262 RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEG-------------RAELLKHGAGLAVVSKKILRVS  327 (407)
Q Consensus       262 ~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~-------------r~~i~~~~g~i~~Lv~~l~~~s  327 (407)
                      +.-.     ..+..|+++|.+   +++...++..+..|... ++.             |+++...  .+|.|++.....+
T Consensus       267 ~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~--~~p~L~~~~~~~~  336 (415)
T PF12460_consen  267 PLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ--VLPKLLEGFKEAD  336 (415)
T ss_pred             chHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH--HHHHHHHHHhhcC
Confidence            2111     246667887765   45667777777777665 322             5555552  5788888776666


Q ss_pred             chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ...+.+.+.+|..+-.+-+..-...++-  ..+|-|+.-|..+ +...+..+-.+|+.+-+
T Consensus       337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLP-DADVLLSSLETLKMILE  394 (415)
T ss_pred             hhhHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            6688999999999999877543333322  3778888888654 67788888777776655

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.12  E-value=23  Score=36.34  Aligned_cols=99  Identities=21%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHH
Q 040073          272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVL  351 (407)
Q Consensus       272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~  351 (407)
                      .+..++.-+.+. +..++..++.+|+.+..+-..-...+. .+.+..|.+.+.+..+.++..|+.+|..+-....+++..
T Consensus        92 ~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~  169 (885)
T COG5218          92 TFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR  169 (885)
T ss_pred             HHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence            333344333343 778999999999999875433334444 355666666666666778888999998877665554333


Q ss_pred             HHHHHhChHHHHHHHHhcCCCHHHHHHH
Q 040073          352 QEMLQVGVVSKLCLVLQVDASVKTKERA  379 (407)
Q Consensus       352 ~~~~~~g~i~~Ll~ll~~~~~~~~k~~A  379 (407)
                             ....|+.++|.+++.++|+.|
T Consensus       170 -------~~n~l~~~vqnDPS~EVRr~a  190 (885)
T COG5218         170 -------IVNLLKDIVQNDPSDEVRRLA  190 (885)
T ss_pred             -------HHHHHHHHHhcCcHHHHHHHH
Confidence                   234677888988899988876

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.83  E-value=2.4  Score=44.36  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHH
Q 040073          113 TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR  192 (407)
Q Consensus       113 ~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~  192 (407)
                      .-.+++.++++|+..+..-|..+.+.-+++.+-.++.....  ..+..++..+.||..++.-..+.+.+.. .-++....
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--~lqraa~e~~~NLl~~~~~~e~si~e~~-~~l~~w~~  634 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENP--ALQRAALESIINLLWSPLLYERSIVEYK-DRLKLWNL  634 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--HHHHHHHHHHHHHHhhHHHHHHHhhccc-cCchHHHH
Confidence            34678999999998888888888876555554444443433  3478888899999888876677777632 13777666


Q ss_pred             HHhcCChhHHHHHHHHHHHhhccCCchhh-hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          193 VLKCGNYQSRSYAIMLLKSIFEVADPFQL-ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       193 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      .+..........++.++..++...++... +.........++.++.++   +.+++...+....|+.
T Consensus       635 ~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~---~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  635 NLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE---DDEIQHRGLVIILNLF  698 (748)
T ss_pred             HHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc---hhhhhhhhhhhhhhHH
Confidence            66665555666777777766666665544 433334578889999998   9999999998888854

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.63  E-value=1.1  Score=40.50  Aligned_cols=82  Identities=18%  Similarity=0.351  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccch-----hhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch-hhhhchhhhH
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNGE-----EFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFF  229 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg-----~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i  229 (407)
                      -+..|+.+|.-|+..+. |.+++..-+.     +.+..|+++|.. ++.-.|+-|+.+|.+|+..++.. +.+..+.+.|
T Consensus       140 PqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  140 PQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             HHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            38999999999998764 5666655431     234455555543 68889999999999999887754 3566667899


Q ss_pred             HHHHHHcccC
Q 040073          230 TEIVNVLRDH  239 (407)
Q Consensus       230 ~~Lv~lL~~~  239 (407)
                      ..|+.++.+.
T Consensus       219 ~~Li~FiE~a  228 (257)
T PF12031_consen  219 SHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=88.09  E-value=0.65  Score=38.84  Aligned_cols=49  Identities=20%  Similarity=0.271  Sum_probs=36.4

Q ss_pred             CcccCccccccCcCceecCCcc-----cccHHHHHHHHhcCCCCCCccccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+-.|=||.+--. +..-||..     -.=++|+++|...+++..||.|++++.-
T Consensus         7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            3457899987753 44456543     2468999999998778899999998743

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=88.03  E-value=39  Score=36.27  Aligned_cols=186  Identities=16%  Similarity=0.078  Sum_probs=109.5

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .+|.+...++...++++.+....+..+-...+.-..-......++.++.+-.+.   ...++.+....+..++....  .
T Consensus       438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~---~wRvr~ail~~ip~la~q~~--~  512 (759)
T KOG0211|consen  438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL---LWRVRLAILEYIPQLALQLG--V  512 (759)
T ss_pred             cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch---hHHHHHHHHHHHHHHHHhhh--h
Confidence            467777788888899999988877665433332222222345688888888776   78888888888888876433  2


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhHHHHHHHHHHh
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASDRAVRILCSVC  342 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e~a~~~L~~l~  342 (407)
                      .+.+.-..+.+..-|.+. ...+++.|+..|..++..-...... .  --++.++.+..+.+   ....-.++..|..+.
T Consensus       513 ~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~  588 (759)
T KOG0211|consen  513 EFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL  588 (759)
T ss_pred             HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence            333322222222223222 3467788888888777622211111 1  13566666455432   334445555555555


Q ss_pred             ccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          343 KFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +   +     ++.....++.+..+.. +..+.+|-++++.|..+.+.
T Consensus       589 g---~-----ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  589 G---Q-----EITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             c---c-----HHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhh
Confidence            3   3     2222346666666554 67888888888888777653

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.35  E-value=6.9  Score=38.94  Aligned_cols=159  Identities=10%  Similarity=0.040  Sum_probs=88.8

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccC----Cch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVA----DPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~----~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      +...+...|.+.....|+++++++.+++..-    .+.  ......+-.+..++..-...+..+..++.+|.++|.|+.+
T Consensus       434 aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  434 AANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            4555666666667888999999999997421    110  1111111234444433221111267899999999999986


Q ss_pred             CCc----hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcC-CchhhHH
Q 040073          260 WGR----NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRV-SHAASDR  333 (407)
Q Consensus       260 ~~~----n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~-s~~~~e~  333 (407)
                      .-+    -.......|.+..++.-........++-+++-++.||-.++.-+-+-..-+ ...+.|..++.+. +=+.+-+
T Consensus       514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~  593 (728)
T KOG4535|consen  514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR  593 (728)
T ss_pred             HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence            321    111112223333333222111256889999999999998876532221112 2345666655443 3466777


Q ss_pred             HHHHHHHHhcc
Q 040073          334 AVRILCSVCKF  344 (407)
Q Consensus       334 a~~~L~~l~~~  344 (407)
                      |+++|......
T Consensus       594 AA~aL~vp~~r  604 (728)
T KOG4535|consen  594 AAAALSVPGKR  604 (728)
T ss_pred             hhhhhcCCCCc
Confidence            88887766654

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.35  E-value=7.3  Score=36.06  Aligned_cols=158  Identities=18%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcC--cHHHHHHHhhccCC--CCchHHHHHHHHHhcCCChhHHHhHhhccch-hh
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAG--AIEFLATIITKSDA--GSDECDEALSILYHLNVSESYLKSIVINNGE-EF  186 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G--~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg-~~  186 (407)
                      +.+.-++.-+|.++.+ +..-..+...+  ....+..++.....  ....+--+++++.|+-.+.... ..+....+ ..
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchH
Confidence            6678888888888775 55555555533  35666666655542  2234677888999988776544 44443220 02


Q ss_pred             HHHHHHHHhcC---ChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCC
Q 040073          187 LESLMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWG  261 (407)
Q Consensus       187 i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~  261 (407)
                      ++.+.....+.   +..++..++.++.|++..--... ..-.....+..+++.+. ..  .++++.-.++.||.+|...+
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~--~d~Ea~~R~LvAlGtL~~~~  233 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE--SDEEALYRLLVALGTLLSSS  233 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH--TSHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHhccC
Confidence            22222222222   67888999999999974321111 00011134666666433 22  28999999999999999877


Q ss_pred             chHHHHHh-cCch
Q 040073          262 RNRIKAVE-GGGV  273 (407)
Q Consensus       262 ~n~~~~v~-~G~v  273 (407)
                      +....+.+ .|+-
T Consensus       234 ~~~~~~~~~l~~~  246 (268)
T PF08324_consen  234 DSAKQLAKSLDVK  246 (268)
T ss_dssp             HHHHHHCCCCTHH
T ss_pred             hhHHHHHHHcChH
Confidence            77766666 3433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.34  E-value=19  Score=39.81  Aligned_cols=174  Identities=14%  Similarity=0.150  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh----hHHHhHhhccchhh
Q 040073          112 STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE----SYLKSIVINNGEEF  186 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~i~~~gg~~  186 (407)
                      ..+...+.+|..+-+..+ ++...+.+  .|+-++=+++..+.  ..+..|...|..++...    +.+..  ..   ..
T Consensus       712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL~~Ke~n~--~aR~~Af~lL~~i~~i~~~~d~g~e~--~~---~~  782 (1176)
T KOG1248|consen  712 PAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVILSLKEVNV--KARRNAFALLVFIGAIQSSLDDGNEP--AS---AI  782 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHHhcccccH--HHHhhHHHHHHHHHHHHhhhcccccc--hH---HH
Confidence            667777777777766544 33333322  23333333343333  34888888888776211    11111  01   14


Q ss_pred             HHHHHHHHhcC--ChhHHHHHHH--HHHHhhccCCchhhhhch---hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          187 LESLMRVLKCG--NYQSRSYAIM--LLKSIFEVADPFQLISVK---QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       187 i~~Lv~lL~~~--~~~~~~~a~~--~L~~Ls~~~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      +..++..+.-|  ....+..+..  ++..+.....+   +...   .+.+..+...|.+.   ++++++.|...+..++.
T Consensus       783 lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~---~ld~~~l~~li~~V~~~L~s~---sreI~kaAI~fikvlv~  856 (1176)
T KOG1248|consen  783 LNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN---ILDDETLEKLISMVCLYLASN---SREIAKAAIGFIKVLVY  856 (1176)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence            55666666554  3344433333  33333322111   2111   23444445556677   99999999999999887


Q ss_pred             C-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          260 W-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       260 ~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      . ++-...--..-.+|.+..++.+. ...++.+.-..|..|..
T Consensus       857 ~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  857 KFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             cCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence            4 34443333344788888888776 67788888888888875

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.14  E-value=1.8  Score=39.02  Aligned_cols=82  Identities=18%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHhcC-------chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH-HHHhccCc
Q 040073          244 QQASKAALKLLVELCPWGRNRIKAVEGG-------GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA-ELLKHGAG  315 (407)
Q Consensus       244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~G-------~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~-~i~~~~g~  315 (407)
                      -.-++-|+.+|..|+..+.|...+..-+       .+..|+++|....+.-.+|-|+.+|.+|+..++.-. .+....+.
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3568999999999999988877666544       344455555554467889999999999999776543 44444678


Q ss_pred             hHHHHHHHHc
Q 040073          316 LAVVSKKILR  325 (407)
Q Consensus       316 i~~Lv~~l~~  325 (407)
                      |..|+.++-+
T Consensus       218 i~~Li~FiE~  227 (257)
T PF12031_consen  218 ISHLIAFIED  227 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.79  E-value=45  Score=35.11  Aligned_cols=102  Identities=17%  Similarity=0.122  Sum_probs=72.9

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .+..+++-..+.+..+|-+.+.+|..++......... ...+....|...+.+.   -+.++..|..+|..+-..+.+- 
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~-vfn~l~e~l~~Rl~Dr---ep~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDD-VFNKLNEKLLIRLKDR---EPNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHhcCCCCC-
Confidence            6778888888889999999999999997522221112 2246777777777777   7899999999999997532221 


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNV  295 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~  295 (407)
                         +..++..++.++..+++++++..|+.-
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsn  187 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSN  187 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence               123567788888887778887766543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.72  E-value=0.59  Score=43.97  Aligned_cols=63  Identities=13%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      ..+-+-||||.+.|.-|+-= .-||..|-+|=.+     ....||.|+.++.+      +.++++.+.++.-+..
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~------~R~~amEkV~e~~~vp  108 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN------IRCRAMEKVAEAVLVP  108 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCcccccccc------HHHHHHHHHHHhceec
Confidence            45568999999999999644 3699999998332     26789999988863      2467788887776443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.68  E-value=27  Score=39.76  Aligned_cols=129  Identities=17%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch--HHHHHhcCchHHHHHH
Q 040073          202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN--RIKAVEGGGVSVLVDL  279 (407)
Q Consensus       202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n--~~~~v~~G~v~~Lv~l  279 (407)
                      ..+|..+...|+...+....   ..+.+..++..|...   ...++..|+++|.++...++.  ....|..|+.    +-
T Consensus       794 ~~~a~li~~~la~~r~f~~s---fD~yLk~Il~~l~e~---~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R  863 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARSFSQS---FDPYLKLILSVLGEN---AIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GR  863 (1692)
T ss_pred             chhHHHHHHHHHhhhHHHHh---hHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hh
Confidence            35677777777655543322   246788888999876   889999999999999886652  2223444333    33


Q ss_pred             hhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073          280 LLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       280 L~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +.+. +..+++.|+..+..-.. .++.-.+..      ..+..-+++.+-.++++++++|..+|...++
T Consensus       864 ~~Ds-sasVREAaldLvGrfvl~~~e~~~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  864 LNDS-SASVREAALDLVGRFVLSIPELIFQYY------DQIIERILDTGVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             hccc-hhHHHHHHHHHHhhhhhccHHHHHHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence            4343 67899999999884433 343322222      2455667777888999999999999987776

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=86.33  E-value=14  Score=39.78  Aligned_cols=182  Identities=16%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-HHhHhh
Q 040073          103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-LKSIVI  180 (407)
Q Consensus       103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~i~  180 (407)
                      +...+.+++ ..+.+|++.+.....+.. ........|.+-.+++....+.. ..+.-.|+..|..++..-.. .+.+..
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN-~~v~~~aa~~l~~ia~~lr~~~~~~~~  335 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDAN-INVVMLAAQILELIAKKLRPLFRKYAK  335 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            334455665 899999999999877632 11111113334444444443333 22466666667666643321 223322


Q ss_pred             ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-
Q 040073          181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-  259 (407)
Q Consensus       181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-  259 (407)
                          .+.+.|...+.......++.+..++...+..       ......++....+++++   ++..+......+-.... 
T Consensus       336 ----~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~k---np~~k~~~~~~l~r~~~~  401 (815)
T KOG1820|consen  336 ----NVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGK---NPQIKGECLLLLDRKLRK  401 (815)
T ss_pred             ----hhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHhh
Confidence                1688888999887888888888887776541       11124577788899988   88887775555544333 


Q ss_pred             CC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          260 WG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       260 ~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .+ .+...-.-.+.+|.++....+. +.+++..|..++..+-.
T Consensus       402 ~~~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  402 LGPKTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCCcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            22 1211112235677777777665 78888888887776654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=86.25  E-value=54  Score=35.51  Aligned_cols=245  Identities=15%  Similarity=0.151  Sum_probs=140.7

Q ss_pred             HHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh----cCC----hhH
Q 040073          133 SCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK----CGN----YQS  201 (407)
Q Consensus       133 ~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~----~~~----~~~  201 (407)
                      ..+.+.|++..|+.+|.+-.+   +.......+.+|...+.-.. +++.+.+.+  +++.|+..|.    .++    .++
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~--al~~LL~~L~~~l~~~~~~~~~~i  187 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELN--ALNRLLSVLNRALQANQNSSQAEI  187 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcC--CHHHHHHHHHHHHhCccccccchH
Confidence            345678999999999986443   23345556666666666654 555555566  6999988875    333    566


Q ss_pred             HHHHHHHHHHhhccCCchhh-h-------h----chhhhHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCCchHHH-H
Q 040073          202 RSYAIMLLKSIFEVADPFQL-I-------S----VKQEFFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWGRNRIK-A  267 (407)
Q Consensus       202 ~~~a~~~L~~Ls~~~~~~~~-i-------~----~~~g~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~~n~~~-~  267 (407)
                      -+....++..|......... .       .    ....-+..|++.+.+.. ..++.+....++.|-+|+-.+..+.. +
T Consensus       188 ~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L  267 (802)
T PF13764_consen  188 AEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL  267 (802)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence            67777777776543321111 0       0    01224677777776431 12678888889999999987665443 3


Q ss_pred             HhcCchHHHHHHhhcc-----cchhH-HHHHHHHHHHHhcCH---hhHHHHHhccCchHHHHHHHHcCCc----------
Q 040073          268 VEGGGVSVLVDLLLDV-----TERRV-CELMLNVLDLLCRCA---EGRAELLKHGAGLAVVSKKILRVSH----------  328 (407)
Q Consensus       268 v~~G~v~~Lv~lL~~~-----~~~~~-~~~al~~L~~L~~~~---~~r~~i~~~~g~i~~Lv~~l~~~s~----------  328 (407)
                      ++.  +.+.++ +..-     .+..+ .+.-+.+...+-.+.   .-|..+++ .|.+...+..|...-+          
T Consensus       268 v~~--F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eW  343 (802)
T PF13764_consen  268 VEH--FKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEW  343 (802)
T ss_pred             HHH--HHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHH
Confidence            332  233222 1111     01112 222333333443333   34667776 5778888888876422          


Q ss_pred             ------hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Q 040073          329 ------AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ-VDASVKTKERAREILKLNAR  388 (407)
Q Consensus       329 ------~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~k~~A~~lL~~l~~  388 (407)
                            ..-..++..|.-++.+..   ..+.++..++| +++.-|. ...+.+.=..|-.+|..|+.
T Consensus       344 k~~l~~psLp~iL~lL~GLa~gh~---~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  344 KEFLSRPSLPYILRLLRGLARGHE---PTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhcCH---HHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                  234567888888887543   34455666777 4445454 23345555566666666654

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.23  E-value=33  Score=32.98  Aligned_cols=158  Identities=12%  Similarity=0.155  Sum_probs=104.3

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhh-hChhHHHHHHh-cC-cHHHHHHHhhccCC---C--------CchHHHHHH-
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITL-QSERNRSCLEA-AG-AIEFLATIITKSDA---G--------SDECDEALS-  163 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~-~~~~~r~~i~~-~G-~i~~Lv~lL~~~~~---~--------~~~~~~a~~-  163 (407)
                      +..+-+.|.+.. ..+..+++-|..++. ++......+.. -+ -.+.|.+++.....   .        ..++...+. 
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            445555666655 566788888888887 65555444444 33 46778888854321   0        045777777 


Q ss_pred             HHHhcCCChhHHH-hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHH-hhccCC----chhhhhchhhhHHHHHHHcc
Q 040073          164 ILYHLNVSESYLK-SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKS-IFEVAD----PFQLISVKQEFFTEIVNVLR  237 (407)
Q Consensus       164 ~L~~L~~~~~~~~-~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~g~i~~Lv~lL~  237 (407)
                      +|..+...+...+ +++...+  .+..+.+-|..++.++......+|.. +..+..    .+..+.. ..++..|+.+..
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~--~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~  214 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKK--LMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS  214 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCc--hHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence            4445555555454 5554443  78888888988899999888888884 544432    2233444 358899999887


Q ss_pred             cCCCCCH----HHHHHHHHHHHHhCCCCch
Q 040073          238 DHHQFSQ----QASKAALKLLVELCPWGRN  263 (407)
Q Consensus       238 ~~~~~~~----~~~~~A~~aL~~L~~~~~n  263 (407)
                      ..   ++    .+.+.+-..|..+|.++.+
T Consensus       215 ~~---~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  215 RD---GEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             cc---CCcccchHHHHHHHHHHHHhcCCCc
Confidence            65   44    7888889999999976653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=86.22  E-value=28  Score=37.64  Aligned_cols=188  Identities=13%  Similarity=0.128  Sum_probs=107.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHH
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKA  267 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~  267 (407)
                      +.+-.-+.+.++.-|..|+.-+........ ....-...|.+..++.....+  .+..+...|+..|-.++..-..-..=
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD--aN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD--ANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC--cchhHHHHHHHHHHHHHHhcchhhHH
Confidence            344445556777777777777766554433 222222335556666655433  37788888888888887632211222


Q ss_pred             HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073          268 VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       268 v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      .-.+.+|.++.-+.+. ...+++.++.++...+....     .  ...++.++..+.+.++..+..+...+.........
T Consensus       333 ~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~-----l--~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTP-----L--SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhccc-----H--HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            2336789999988886 67888888888887776221     1  12344555555566677777766666655544331


Q ss_pred             hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       348 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ..+....+ .+.++.++.... ++...+|..|.+.+-.+-+
T Consensus       405 ~~~~~~t~-~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETV-KTLVPHLIKHIN-DTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhH-HHHhHHHhhhcc-CCcHHHHHHHHHHHHHHHH
Confidence            11111111 244555554443 5667777777665544433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=86.07  E-value=26  Score=33.05  Aligned_cols=170  Identities=15%  Similarity=0.096  Sum_probs=101.8

Q ss_pred             hHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--
Q 040073          186 FLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--  262 (407)
Q Consensus       186 ~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--  262 (407)
                      .+..|+ -.+++.+..+|+.|..+|+-++-.+..   ...  ..++.+...++.+   +.+++..|+.+|..+.....  
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~--~~l~l~~~~~~~~---~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK--EHLPLFLQALQKD---DEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH--HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCch
Confidence            454444 667788999999999999998876652   322  3578888888777   89999999999999876332  


Q ss_pred             hHHH-------HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhH
Q 040073          263 NRIK-------AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASD  332 (407)
Q Consensus       263 n~~~-------~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e  332 (407)
                      .-..       .-....+..+.+.|.+. +++++..|+.-+..|--++....    ....+..|+-.-.+..   ...-.
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence            1111       11234566677777776 77888888888887766443221    0122233333233221   11223


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD  370 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~  370 (407)
                      .++...--....+..  ..++.+..+.++.+..+....
T Consensus       174 Q~L~~Ffp~y~~s~~--~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  174 QCLSVFFPVYASSSP--ENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhCc
Confidence            334433333332221  245566667777777766654

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.66  E-value=0.6  Score=44.34  Aligned_cols=47  Identities=30%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             ccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      +.|.|+++.|.|   |+..|.||+|-..+|++|-..+ .-.||.++..+..
T Consensus       331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-~i~dP~~~k~f~~  380 (389)
T KOG0396|consen  331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-GIGDPRTKKVFRY  380 (389)
T ss_pred             HHhhccccccCCCCCcccccCceeehhHHHHhhcccC-CCcCCCCCccccH
Confidence            578999999976   9999999999999999997653 3889999987754

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.63  E-value=54  Score=34.95  Aligned_cols=207  Identities=14%  Similarity=0.155  Sum_probs=122.5

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI  180 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~  180 (407)
                      .|.+.|.+.. ..+..|++.|-.+...+.....      ..|.+|+-..+.+.  .++.-..--|...+..++  .-.+.
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~--EVKkLVyvYLlrYAEeqp--dLALL  108 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNI--EVKKLVYVYLLRYAEEQP--DLALL  108 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCH--HHHHHHHHHHHHHhhcCC--Cceee
Confidence            4556666555 7788999877777655443222      34667776665554  233333222333332221  12221


Q ss_pred             ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                           .|..+-+-|+.+|..+|.-|.++|..+= .     .+.  .+++-.-| +...+.   ++-+++.|+.||-.|-+
T Consensus       109 -----SIntfQk~L~DpN~LiRasALRvlSsIR-v-----p~I--aPI~llAIk~~~~D~---s~yVRk~AA~AIpKLYs  172 (968)
T KOG1060|consen  109 -----SINTFQKALKDPNQLIRASALRVLSSIR-V-----PMI--APIMLLAIKKAVTDP---SPYVRKTAAHAIPKLYS  172 (968)
T ss_pred             -----eHHHHHhhhcCCcHHHHHHHHHHHHhcc-h-----hhH--HHHHHHHHHHHhcCC---cHHHHHHHHHhhHHHhc
Confidence                 3778889999999999988877777651 1     111  12222222 334455   88999999999999988


Q ss_pred             CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073          260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC  339 (407)
Q Consensus       260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~  339 (407)
                      -+.+.+..    .+..+-.+|.+. ++.+.-.|+.+...+|-  + |-.++-  +--..+-+++.+.++..|-..+..|.
T Consensus       173 Ld~e~k~q----L~e~I~~LLaD~-splVvgsAv~AF~evCP--e-rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~  242 (968)
T KOG1060|consen  173 LDPEQKDQ----LEEVIKKLLADR-SPLVVGSAVMAFEEVCP--E-RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLT  242 (968)
T ss_pred             CChhhHHH----HHHHHHHHhcCC-CCcchhHHHHHHHHhch--h-HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHH
Confidence            55544331    233444666665 78888899999988874  3 222321  22455555555556666666666666


Q ss_pred             HHhcc
Q 040073          340 SVCKF  344 (407)
Q Consensus       340 ~l~~~  344 (407)
                      ..|++
T Consensus       243 RYAR~  247 (968)
T KOG1060|consen  243 RYARH  247 (968)
T ss_pred             HHHHh
Confidence            66653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=85.42  E-value=9.3  Score=39.21  Aligned_cols=74  Identities=24%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHH
Q 040073          197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSV  275 (407)
Q Consensus       197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~  275 (407)
                      |+...+..|+..|......=+.   .  ...+|..+++|..++   +..++..|.+.|-.+|.. ++...+     ++..
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~---l--~~~Ai~a~~DLcEDe---d~~iR~~aik~lp~~ck~~~~~v~k-----vaDv  100 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPD---L--QEEAINAQLDLCEDE---DVQIRKQAIKGLPQLCKDNPEHVSK-----VADV  100 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GG---G--HHHHHHHHHHHHT-S---SHHHHHHHHHHGGGG--T--T-HHH-----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChh---h--HHHHHHHHHHHHhcc---cHHHHHHHHHhHHHHHHhHHHHHhH-----HHHH
Confidence            6788888888888776543222   1  134688888999888   888999999999988874 344444     3567


Q ss_pred             HHHHhhcc
Q 040073          276 LVDLLLDV  283 (407)
Q Consensus       276 Lv~lL~~~  283 (407)
                      |+++|.+.
T Consensus       101 L~QlL~td  108 (556)
T PF05918_consen  101 LVQLLQTD  108 (556)
T ss_dssp             HHHHTT--
T ss_pred             HHHHHhcc
Confidence            88888775

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=85.10  E-value=0.72  Score=42.73  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=30.6

Q ss_pred             ccCccccccCcCceecC-CcccccHHHHHHHHhcC
Q 040073           10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTC   43 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~   43 (407)
                      ++|+|+++.|.+||+.+ -|+-|.+..|.+|+...
T Consensus        35 ~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~   69 (260)
T PF04641_consen   35 THCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK   69 (260)
T ss_pred             CcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence            68999999999999764 79999999999999753

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.80  E-value=8.8  Score=42.24  Aligned_cols=143  Identities=16%  Similarity=0.172  Sum_probs=103.9

Q ss_pred             hHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073          228 FFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR  306 (407)
Q Consensus       228 ~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r  306 (407)
                      +.|.++...++.+ ..+|+.+.+|.-||..+..-..   .+.+ -..|.|+..|...+++.++-+++-+|.-++-.-.+-
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            5666777776532 1278999999999998765221   2223 358999999986667888889988888887643322


Q ss_pred             HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH-hChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073          307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQVDASVKTKERAREILKL  385 (407)
Q Consensus       307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~  385 (407)
                         ++ . --+.|...+.+.+..+++.|+.+|.+|-.        ..|++ -|-+..+...+. +++.+.+..|....+-
T Consensus       996 ---ie-~-~T~~Ly~rL~D~~~~vRkta~lvlshLIL--------ndmiKVKGql~eMA~cl~-D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  996 ---IE-P-WTEHLYRRLRDESPSVRKTALLVLSHLIL--------NDMIKVKGQLSEMALCLE-DPNAEISDLAKSFFKE 1061 (1251)
T ss_pred             ---cc-h-hhHHHHHHhcCccHHHHHHHHHHHHHHHH--------hhhhHhcccHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence               22 1 23577777777889999999999999985        23343 488999988887 7799999999977766


Q ss_pred             HHh
Q 040073          386 NAR  388 (407)
Q Consensus       386 l~~  388 (407)
                      |+.
T Consensus      1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred             hhh
Confidence            655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.70  E-value=54  Score=34.18  Aligned_cols=161  Identities=15%  Similarity=0.074  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHh---cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEA---AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE  188 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~---~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~  188 (407)
                      +.+.-|+..||.+.++...+-..+-.   ...+..++..+. .+.  ..+--+++.|.|+-.+.. .++.+...--..+.
T Consensus       559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~--an~ll~vR~L~N~f~~~~-g~~~~~s~~~~i~~  634 (745)
T KOG0301|consen  559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADP--ANQLLVVRCLANLFSNPA-GRELFMSRLESILD  634 (745)
T ss_pred             HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cch--hHHHHHHHHHHHhccCHH-HHHHHHHHHHHHhh
Confidence            66778888999888775544433331   224555555555 222  237788899999777654 34444432100222


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhhc--cCCchhhhhchhhhHHHHHHH----cccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073          189 SLMRVLKCGNYQSRSYAIMLLKSIFE--VADPFQLISVKQEFFTEIVNV----LRDHHQFSQQASKAALKLLVELCPWGR  262 (407)
Q Consensus       189 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~l----L~~~~~~~~~~~~~A~~aL~~L~~~~~  262 (407)
                      .++..=...+..++...+....|.+.  ...+.+ +    |..+.|...    ++.-  .+-++.-..+.||.+|+..+.
T Consensus       635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~----~~~~~l~~ai~~~~e~~--~d~EA~yR~l~AlgtL~t~~~  707 (745)
T KOG0301|consen  635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L----EGKEVLLSAISTLLEPV--DDLEAIYRLLVALGTLMTVDA  707 (745)
T ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c----chHHHHHHHHHhhcccc--hhHHHHHHHHHHHHhhccccH
Confidence            22222222345555555555555442  222222 2    223333333    3221  144666777889999999998


Q ss_pred             hHHHHHhcCchHHHHHHhhcc
Q 040073          263 NRIKAVEGGGVSVLVDLLLDV  283 (407)
Q Consensus       263 n~~~~v~~G~v~~Lv~lL~~~  283 (407)
                      +..++...=-|..++.-+++.
T Consensus       708 ~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  708 SVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             HHHHHHHhcCHHHHHHHHHHh
Confidence            888888866688888888764

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=84.62  E-value=23  Score=38.04  Aligned_cols=178  Identities=10%  Similarity=0.080  Sum_probs=100.2

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccC
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVA  216 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~  216 (407)
                      +++..|.++.....+  ++...-..+|...+.-+.+...... +  +..|.++.+..  +.++.+...+-.++..|+...
T Consensus       530 ~ild~L~qlas~~s~--evl~llmE~Ls~vv~~dpef~as~~-s--kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~  604 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSD--EVLVLLMEALSSVVKLDPEFAASME-S--KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA  604 (1005)
T ss_pred             HHHHHHHHHcccccH--HHHHHHHHHHHHHhccChhhhhhhh-c--chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            444555555544333  3455555577776666554333222 2  26777777664  357777888888888887654


Q ss_pred             CchhhhhchhhhHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHH
Q 040073          217 DPFQLISVKQEFFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLN  294 (407)
Q Consensus       217 ~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~  294 (407)
                      .+...+..  -.||.||+.|.... +.+......|+..|--+..+. +.-....-.=++|++.+.....++.+....+-.
T Consensus       605 ~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~E  682 (1005)
T KOG2274|consen  605 ANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATE  682 (1005)
T ss_pred             HhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHH
Confidence            43333322  47999999997541 123555666666666555432 211222222368888887765546777777777


Q ss_pred             HHHHHhcCHhhHHHHHhccCchH--HHHHHH
Q 040073          295 VLDLLCRCAEGRAELLKHGAGLA--VVSKKI  323 (407)
Q Consensus       295 ~L~~L~~~~~~r~~i~~~~g~i~--~Lv~~l  323 (407)
                      +|+.+-..+-.+-.-...++|..  .+++.+
T Consensus       683 cLra~Is~~~eq~~t~~~e~g~~~~yImqV~  713 (1005)
T KOG2274|consen  683 CLRALISVTLEQLLTWHDEPGHNLWYIMQVL  713 (1005)
T ss_pred             HHHHHHhcCHHHHHhhccCCCccHHHHHHHH
Confidence            77776654332332333334444  444433

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.44  E-value=0.27  Score=53.73  Aligned_cols=45  Identities=29%  Similarity=0.625  Sum_probs=38.8

Q ss_pred             CcccCccccccCc-CceecCCcccccHHHHHHHHhcCCCCCCcccccc
Q 040073            8 AHFLCPISLQLMR-DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQV   54 (407)
Q Consensus         8 ~~~~Cpi~~~~~~-dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~   54 (407)
                      ..+.|+||+++|+ -=-+.-|||-||-.|++-|+..  +..||.|+..
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSI 1197 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhh
Confidence            3468999999999 6667789999999999999976  7789999753

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=84.41  E-value=0.42  Score=49.42  Aligned_cols=65  Identities=14%  Similarity=0.314  Sum_probs=46.6

Q ss_pred             cccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073            9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW   76 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~   76 (407)
                      +..||||.....+|+.+.|-|.||+.|+...|... +...||.|+......   ...-.....+++++.
T Consensus        21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~---s~~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR---SLRESPRFSQLSKES   86 (684)
T ss_pred             hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh---hccccchHHHHHHHh
Confidence            46899999999999999999999999999866543 256799998554332   222233344555544

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.34  E-value=1.1  Score=43.23  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=34.3

Q ss_pred             cccCccccccCcC---ceecCCcccccHHHHHHHHhc---CC---CCCCcccccc
Q 040073            9 HFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFT---CK---NNTCPVTKQV   54 (407)
Q Consensus         9 ~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~---~~---~~~cP~~~~~   54 (407)
                      .|-|.||.+-..-   =+-+||+|.|||+|+..|+..   +|   .-.||.++.+
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            4789999965543   346799999999999999964   22   2468777654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.06  E-value=47  Score=35.68  Aligned_cols=58  Identities=10%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC
Q 040073           95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA  153 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~  153 (407)
                      ++.......+..+..+. +.+-+++..|+.+.+. ......+...+++...+..|++.++
T Consensus       724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~Lkdeds  782 (982)
T KOG4653|consen  724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDS  782 (982)
T ss_pred             ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCc
Confidence            44555667777777766 8999999999999885 2445566678899999999998776

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.81  E-value=46  Score=32.68  Aligned_cols=83  Identities=17%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCCh-hHHHhHhhccchhhH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSE-SYLKSIVINNGEEFL  187 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i  187 (407)
                      ++-.+|+++|.++.-+++..|....+......+.+.+.....   ..++..-=+..|..|..-. +-..+++.+.+|  +
T Consensus       112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G--l  189 (532)
T KOG4464|consen  112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG--L  189 (532)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc--c
Confidence            667899999999999999999999988777777666643221   1222344445555544333 334566666664  9


Q ss_pred             HHHHHHHhc
Q 040073          188 ESLMRVLKC  196 (407)
Q Consensus       188 ~~Lv~lL~~  196 (407)
                      +.+..+|..
T Consensus       190 ~~lt~~led  198 (532)
T KOG4464|consen  190 ELLTNWLED  198 (532)
T ss_pred             HHHHHHhhc
Confidence            999999875

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=83.72  E-value=49  Score=33.23  Aligned_cols=266  Identities=14%  Similarity=0.026  Sum_probs=131.5

Q ss_pred             CChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-----hH-HHhHhhccc
Q 040073          110 SPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE-----SY-LKSIVINNG  183 (407)
Q Consensus       110 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-----~~-~~~~i~~~g  183 (407)
                      +...+.++++.|..++..-.-.|-.+.+.|  ..+..-+.....  .+++.+...+..+-.+-     ++ .+.-+..+ 
T Consensus       268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p--~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~-  342 (728)
T KOG4535|consen  268 PSPMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADP--SIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRA-  342 (728)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCCh--HHHHHHHHHHHHHHHHHhhhcCCCcccchhhhc-
Confidence            348899999999999877433444433322  222233333333  45777777666543211     00 01111110 


Q ss_pred             hhhHHH------HHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          184 EEFLES------LMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       184 g~~i~~------Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                        .+-.      +-..+ .+.-...+..++.++.+++...-++-.-+...-.+..+...=.++   +.-.+.+|.+++.-
T Consensus       343 --~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~---~~lv~~aA~Ra~~V  417 (728)
T KOG4535|consen  343 --PFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK---NRLVKAAASRALGV  417 (728)
T ss_pred             --cHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH---HHHHHHHHHhhcee
Confidence              0100      00111 112233456677777777654332221111111122222211122   33355556666666


Q ss_pred             hCCCCchHHHH-HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-----CHhhHHHHHhccCchHHHHHHHHc-----
Q 040073          257 LCPWGRNRIKA-VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-----CAEGRAELLKHGAGLAVVSKKILR-----  325 (407)
Q Consensus       257 L~~~~~n~~~~-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-----~~~~r~~i~~~~g~i~~Lv~~l~~-----  325 (407)
                      +..++.-+... .-+.+...+...|.+. .-..++++++++.+++.     -+.-+.....   .+..++..+.+     
T Consensus       418 yVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR---~sg~ll~~~~~~A~~~  493 (728)
T KOG4535|consen  418 YVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQER---FSGLLLLKMLRSAIEA  493 (728)
T ss_pred             EEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHh
Confidence            66666544332 2245566666777664 56788999999999864     1221222111   11122222222     


Q ss_pred             --CCchhhHHHHHHHHHHhccCC-chHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          326 --VSHAASDRAVRILCSVCKFSA-TARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       326 --~s~~~~e~a~~~L~~l~~~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                        ...+++.+|+++|.++...-. -.+........|.+.+++.-..-.+..++|=+|.-.+.+|-++
T Consensus       494 ~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  494 SADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             hhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence              136789999999998874210 0001111122345555554433345788899999999988775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=83.69  E-value=23  Score=37.74  Aligned_cols=176  Identities=11%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             HHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH--HHHHHHhcC
Q 040073          120 RLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE--SLMRVLKCG  197 (407)
Q Consensus       120 ~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~--~Lv~lL~~~  197 (407)
                      .|.....+++++-+.+.+.|++..+...++..+. ...+..++.++.+++...+.........   .+.  .+-.++..-
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~-~~~~~~il~~l~n~~~~~~~~~~~~~~~---~~~~~~f~~~~~~w  569 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN-EELHRKILGLLGNLAEVLELRELLMIFE---FIDFSVFKVLLNKW  569 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHhhc
Confidence            7788888899999999999999999999998744 3458899999999886554322222211   232  222344433


Q ss_pred             -ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH-
Q 040073          198 -NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV-  275 (407)
Q Consensus       198 -~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~-  275 (407)
                       +.+.--+|+.+|..+....+.........-+-..+++.....                     ........-...+.+ 
T Consensus       570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~---------------------~~~~~~~~~~~~f~~~  628 (699)
T KOG3665|consen  570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRW---------------------LTSEIRVINDRSFFPR  628 (699)
T ss_pred             chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhcc---------------------Cccceeehhhhhcchh
Confidence             336667888888887765554111111111222223332222                     112222222223333 


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHH
Q 040073          276 LVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSK  321 (407)
Q Consensus       276 Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~  321 (407)
                      +..++.....+...-.|++++.++... +++.+.+.. .++++.+..
T Consensus       629 ~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~  674 (699)
T KOG3665|consen  629 ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIEN  674 (699)
T ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhh
Confidence            555555544567778899999988875 454544444 677776665

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=83.44  E-value=15  Score=39.46  Aligned_cols=150  Identities=13%  Similarity=0.163  Sum_probs=98.1

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc-cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      ..+|.|++-......+  .+.+=+.+|.++-.+-+  +..+.. -. +.+|.|++.|+-.+..+|..+..++.-+....+
T Consensus       867 ~ivP~l~~~~~t~~~~--~K~~yl~~LshVl~~vP--~~vllp~~~-~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGS--QKHNYLEALSHVLTNVP--KQVLLPQFP-MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             hhHHHHHHHhccCCcc--chhHHHHHHHHHHhcCC--HHhhccchh-hHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            4688888888733332  24555555555433322  344433 23 378888999998999999999999988766554


Q ss_pred             chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073          218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNV  295 (407)
Q Consensus       218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~  295 (407)
                      .-..--. .-++|.|..+=.+.++....++..|+.+|..|.. .+.+.-.--+-.++.+|+..|.+. .+-+++.|..+
T Consensus       942 tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  942 TLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred             ccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence            4322222 1367777776655421127899999999999998 555444444556788899999885 66777777653

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=83.34  E-value=42  Score=31.87  Aligned_cols=225  Identities=14%  Similarity=0.053  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL  190 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L  190 (407)
                      -.+.-|+.++..+... ++.|+.+-. .-.-..++.++++.-.....+.+.+-+++.|+.+.+ ..+.+.+.. +.+..|
T Consensus       164 lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~-dli~dl  240 (432)
T COG5231         164 LTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMD-DLINDL  240 (432)
T ss_pred             HHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHH-HHHHHH
Confidence            4456678888888776 677766654 334456777777654423458899999999888775 344454433 257777


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHHhhccC--CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH-------------
Q 040073          191 MRVLKCG-NYQSRSYAIMLLKSIFEVA--DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL-------------  254 (407)
Q Consensus       191 v~lL~~~-~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL-------------  254 (407)
                      +.+.+.. ...+..-++.++.++....  ..-...... |-+..-|++|...+ ++++-...=..-|             
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~erk-ysDEel~~di~~i~s~l~~~~k~l~~  318 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLERK-YSDEELVIDIERIRSRLVQNTKKLCI  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhhhhhhH
Confidence            7777653 3445567777888887532  111122222 33555666665431 2222111111111             


Q ss_pred             -----HH-----hCCCC---------chHHHHHhc--CchHHHHHHhhcccchh-HHHHHHHHHHHHhc-CHhhHHHHHh
Q 040073          255 -----VE-----LCPWG---------RNRIKAVEG--GGVSVLVDLLLDVTERR-VCELMLNVLDLLCR-CAEGRAELLK  311 (407)
Q Consensus       255 -----~~-----L~~~~---------~n~~~~v~~--G~v~~Lv~lL~~~~~~~-~~~~al~~L~~L~~-~~~~r~~i~~  311 (407)
                           ..     |+-++         +|...+.+.  ..+..|.++|... .++ ....|+.=+..+.+ .++++.-+..
T Consensus       319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K  397 (432)
T COG5231         319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAVLSK  397 (432)
T ss_pred             HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence                 11     11111         255666553  3677788888775 333 33344544544444 6777776655


Q ss_pred             ccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          312 HGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       312 ~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                       .||=..++.+|.+.+++.+-.|+.++..+-+
T Consensus       398 -yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         398 -YGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             -hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence             6777888887777788999999998877653

>PLN02195 cellulose synthase A

Probab=83.33  E-value=0.74  Score=49.59  Aligned_cols=45  Identities=7%  Similarity=0.066  Sum_probs=36.2

Q ss_pred             cCccccc-----cCcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073           11 LCPISLQ-----LMRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus        11 ~Cpi~~~-----~~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      .|.||++     .+-+|.+.+  ||.-.||.|-|-= .+.|+..||+|+..+.
T Consensus         8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye-r~eg~q~CpqCkt~Yk   59 (977)
T PLN02195          8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE-IKEGRKVCLRCGGPYD   59 (977)
T ss_pred             cceecccccCcCCCCCeEEEeccCCCccccchhhhh-hhcCCccCCccCCccc
Confidence            6999997     566888775  9999999999543 3346999999998776

>PLN02189 cellulose synthase

Probab=83.12  E-value=0.72  Score=50.00  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=35.7

Q ss_pred             cCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073           11 LCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus        11 ~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      .|+||++-     .-+|.+.+  ||.-.||.|-|-=.+ .|+..||.|+..+.
T Consensus        36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~-eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-EGTQNCPQCKTRYK   87 (1040)
T ss_pred             cccccccccCcCCCCCEEEeeccCCCccccchhhhhhh-cCCccCcccCCchh
Confidence            89999974     55677664  999999999965444 46999999998765

>PHA02862 5L protein; Provisional

Probab=82.97  E-value=1.1  Score=36.84  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cCccccccCcCceecCCccc-----ccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRDPVTVSTGIT-----YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~dPv~~~~g~t-----~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .|=||.+-=.+.+ -||..+     .-++|+++|+...++..||.|+.++..
T Consensus         4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            5778887655553 555432     558999999987667899999998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.36  E-value=0.72  Score=48.44  Aligned_cols=42  Identities=21%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      .-.|..|.-.+.-|++- .|||.|-++|.+    . +...||.|.-.+
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~-~~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D-KEDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc----c-CcccCCccchhh
Confidence            35899999999999876 699999999988    2 377899996533

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=81.90  E-value=17  Score=32.56  Aligned_cols=139  Identities=8%  Similarity=-0.025  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc----cCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHH
Q 040073          203 SYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR----DHHQFSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVL  276 (407)
Q Consensus       203 ~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~L  276 (407)
                      -+|..+|.-++++++.+..+.. +.+--.|-..|.    +.  ...-.+-.+++++..|..+++  ..+.+..-.+||..
T Consensus       118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~--~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNS--KFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCC--ccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            4666667777777777665554 332112223333    22  134577888999999998765  45556677899999


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc---CchH----HHHHHHH-cCCchhhHHHHHHHHHHhccC
Q 040073          277 VDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG---AGLA----VVSKKIL-RVSHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       277 v~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~---g~i~----~Lv~~l~-~~s~~~~e~a~~~L~~l~~~~  345 (407)
                      +..+..+ ++-.+..|+.++..+-.++.|-+-+...-   -+|.    .++.-+. .++.+.-++++++-..+|...
T Consensus       195 LrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p  270 (315)
T COG5209         195 LRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP  270 (315)
T ss_pred             HHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence            9999987 66667788888888877777766554321   1222    2222221 235677888999888888643

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=81.65  E-value=0.56  Score=41.68  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             CCcccCcccc-ccCcCce----ecC-CcccccHHHHHHHHhcCCCCCCc--ccccccc
Q 040073            7 PAHFLCPISL-QLMRDPV----TVS-TGITYDRVNIERWLFTCKNNTCP--VTKQVLQ   56 (407)
Q Consensus         7 p~~~~Cpi~~-~~~~dPv----~~~-~g~t~~r~~i~~~~~~~~~~~cP--~~~~~~~   56 (407)
                      -.+-.||||. +.+-.|=    +-| |=|..|-+|+.+-|.. |.-.||  -|++.+.
T Consensus         8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR   64 (314)
T COG5220           8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR   64 (314)
T ss_pred             hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence            3456899998 6666773    234 9999999999999987 588899  6766543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=81.41  E-value=16  Score=39.25  Aligned_cols=146  Identities=14%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhh-chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-ch
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLIS-VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RN  263 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n  263 (407)
                      .+|.|++.........|.+-..+|.+...+-+ +..+. .-....|.|++-|.-.   |..++-.++.+|.-+..-. .-
T Consensus       868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~---D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP---DVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             hHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC---ccchhhhHhhhhhHHHHhcccc
Confidence            68888888886677788888888888765433 33332 2234778888888877   8888888888888765522 22


Q ss_pred             HHHHHhcCchHHHHHHhhcccc--hhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHH
Q 040073          264 RIKAVEGGGVSVLVDLLLDVTE--RRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRI  337 (407)
Q Consensus       264 ~~~~v~~G~v~~Lv~lL~~~~~--~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~  337 (407)
                      ...-++ -.||.++.+=.+..+  ..+++.|+..|..|.+ .+..+-.-.. ...+..+++.|.+.....++.|+.+
T Consensus       944 ~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  944 QTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             chHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHHHH
Confidence            221122 357777766555422  5688999999999998 4433222222 2345666775555455667777654

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=81.32  E-value=0.48  Score=37.18  Aligned_cols=34  Identities=12%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             CCCCCcccCccccccCcCce--ecCCcccccHHHHH
Q 040073            4 IEVPAHFLCPISLQLMRDPV--TVSTGITYDRVNIE   37 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv--~~~~g~t~~r~~i~   37 (407)
                      +.|.++-.|++|++.+.+++  +.||||.|-..|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            35677888999999988777  44899999888864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.15  E-value=80  Score=33.57  Aligned_cols=231  Identities=14%  Similarity=0.141  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      ..|.--++.|+..+..++.-+.     -.|..+..+|.+.++  .+..+|+..|..|+.+....+.        +...++
T Consensus       221 ~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stss--aV~fEaa~tlv~lS~~p~alk~--------Aa~~~i  285 (948)
T KOG1058|consen  221 SLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSS--AVIFEAAGTLVTLSNDPTALKA--------AASTYI  285 (948)
T ss_pred             HHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCc--hhhhhhcceEEEccCCHHHHHH--------HHHHHH
Confidence            3344455566666654444332     246788888888755  4688888888888765432221        233444


Q ss_pred             HHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073          192 RVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG  270 (407)
Q Consensus       192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~  270 (407)
                      .++.. .+-.++.-...-|..+.   ...+.+..  |.+--.+++|...   +-++++.++.....|..+.. ...++. 
T Consensus       286 ~l~~kesdnnvklIvldrl~~l~---~~~~~il~--~l~mDvLrvLss~---dldvr~Ktldi~ldLvssrN-vediv~-  355 (948)
T KOG1058|consen  286 DLLVKESDNNVKLIVLDRLSELK---ALHEKILQ--GLIMDVLRVLSSP---DLDVRSKTLDIALDLVSSRN-VEDIVQ-  355 (948)
T ss_pred             HHHHhccCcchhhhhHHHHHHHh---hhhHHHHH--HHHHHHHHHcCcc---cccHHHHHHHHHHhhhhhcc-HHHHHH-
Confidence            55433 22223322222333332   44444543  6666777888887   89999999999888876443 222221 


Q ss_pred             CchHHHHH-Hhhcc-----cchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          271 GGVSVLVD-LLLDV-----TERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       271 G~v~~Lv~-lL~~~-----~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                          .|-. +.+..     .+..-+..-+.+++..+.. ++    +.  +..|+.|++++.+.++......+..+...-.
T Consensus       356 ----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~a--atvV~~ll~fisD~N~~aas~vl~FvrE~ie  425 (948)
T KOG1058|consen  356 ----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VA--ATVVSLLLDFISDSNEAAASDVLMFVREAIE  425 (948)
T ss_pred             ----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence                1111 11111     1234466667777777653 33    22  2357888888876555444444444433332


Q ss_pred             cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      ..++       .++..+++|++-+..=.+.+.-+-|.|++.
T Consensus       426 k~p~-------Lr~~ii~~l~~~~~~irS~ki~rgalwi~G  459 (948)
T KOG1058|consen  426 KFPN-------LRASIIEKLLETFPQIRSSKICRGALWILG  459 (948)
T ss_pred             hCch-------HHHHHHHHHHHhhhhhcccccchhHHHHHH
Confidence            2221       234456666665543335666666666654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.14  E-value=43  Score=30.40  Aligned_cols=142  Identities=17%  Similarity=0.214  Sum_probs=85.8

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ  220 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~  220 (407)
                      ++.|+.-+....++. .+...+..|..++.++.   . .. .  .++..|..+.+.+..+.+.-+...+..+-...+...
T Consensus         2 l~~L~~~l~~~~~~~-~~~~~L~~L~~l~~~~~---~-~~-~--~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPE-LQLPLLEALPSLACHKN---V-CV-P--PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF   73 (234)
T ss_pred             hHHHHHHhcCCCChH-HHHHHHHHHHHHhccCc---c-ch-h--HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH
Confidence            345555455444433 47788888888887761   1 11 1  156667777777777766666667776654433211


Q ss_pred             hhhchhhhHHHHHHH--cc-----cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHh-hcccchhHHHHH
Q 040073          221 LISVKQEFFTEIVNV--LR-----DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL-LDVTERRVCELM  292 (407)
Q Consensus       221 ~i~~~~g~i~~Lv~l--L~-----~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL-~~~~~~~~~~~a  292 (407)
                            +.+..++..  ++     .++....+..-..+.+++.+|...+++    -...++.+.+.| .+. ++..+..+
T Consensus        74 ------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~-~~~~~ala  142 (234)
T PF12530_consen   74 ------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSC-DEVAQALA  142 (234)
T ss_pred             ------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccc-cHHHHHHH
Confidence                  445555544  11     110013455555567888998866661    123677888888 554 67788899


Q ss_pred             HHHHHHHhc
Q 040073          293 LNVLDLLCR  301 (407)
Q Consensus       293 l~~L~~L~~  301 (407)
                      +..|..|+.
T Consensus       143 le~l~~Lc~  151 (234)
T PF12530_consen  143 LEALAPLCE  151 (234)
T ss_pred             HHHHHHHHH
Confidence            999999993

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.98  E-value=10  Score=41.84  Aligned_cols=142  Identities=14%  Similarity=0.052  Sum_probs=103.4

Q ss_pred             hHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC
Q 040073          186 FLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG  261 (407)
Q Consensus       186 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~  261 (407)
                      +.|.++..-++    ++++.+..|.-+|..+...+.   .++..  ..+.|+.++...  .++-++.++..++..|+..-
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fces--~l~llftimeks--p~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCES--HLPLLFTIMEKS--PSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHHH--HHHHHHHHHhcC--CCceeeecchheccchhhhc
Confidence            67777887754    578999999999999865432   24443  489999999854  38999999999999998755


Q ss_pred             chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073          262 RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV  341 (407)
Q Consensus       262 ~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l  341 (407)
                      +|-   ++. .-+.|...|.+. +..+++.|+.+|..|-..+--|     .-|.++-+...|-+..+..+..|-.....|
T Consensus       993 pnl---ie~-~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNL---IEP-WTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccc---cch-hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            542   222 246677788776 8899999999999998765322     246777777777777777777776555555


Q ss_pred             hcc
Q 040073          342 CKF  344 (407)
Q Consensus       342 ~~~  344 (407)
                      ++.
T Consensus      1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred             hhc
Confidence            543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=80.20  E-value=35  Score=28.97  Aligned_cols=140  Identities=13%  Similarity=0.121  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh-cCHh
Q 040073          226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC-RCAE  304 (407)
Q Consensus       226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~-~~~~  304 (407)
                      ...++.|.++|+++  .+.++++.++++|..|..-++.+.+..+.+. +   ..-............+. ..... ..++
T Consensus         9 P~LL~~L~~iLk~e--~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~~~~~~~~~~~l~-~~~~~~~~ee   81 (160)
T PF11865_consen    9 PELLDILLNILKTE--QSQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSENSNDESTDISLP-MMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccccCcHHHhcccccC-C---ccccccccccchhhHHh-hccCCCchHH
Confidence            34677888999887  4799999999999999988887777544321 1   00000001122222221 11111 2222


Q ss_pred             hHHHHHhccCchHHHHHHHHcCC-chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073          305 GRAELLKHGAGLAVVSKKILRVS-HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE  381 (407)
Q Consensus       305 ~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~  381 (407)
                      .-..     ..+..|++.+.+.+ ......++.++..+.+..+.+ +....  ...+|.++..++ .+++..++.--.
T Consensus        82 ~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~L--~~viP~~l~~i~-~~~~~~~e~~~~  150 (160)
T PF11865_consen   82 YYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPYL--PQVIPIFLRVIR-TCPDSLREFYFQ  150 (160)
T ss_pred             HHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhHH--HHHhHHHHHHHH-hCCHHHHHHHHH
Confidence            2222     34668888676655 344556788888888543332 33332  248899999998 566676666433

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=80.07  E-value=75  Score=36.50  Aligned_cols=142  Identities=16%  Similarity=0.212  Sum_probs=93.3

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~  264 (407)
                      .+..++..|..+...+|..|..+|..+...+..   +.....+-....+-+.+.   +..++++|+..+..... .++..
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~Ds---sasVREAaldLvGrfvl~~~e~~  890 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDS---SASVREAALDLVGRFVLSIPELI  890 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccc---hhHHHHHHHHHHhhhhhccHHHH
Confidence            778888999988999999999999999876653   211122223344556566   78899999998875433 23322


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhHHHHHHHHHH
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASDRAVRILCSV  341 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e~a~~~L~~l  341 (407)
                      .+.     ...+.+-+.+. +..++..++.+|..+|.....-..+.+      ..+++|.+.+   ...++.+..++..+
T Consensus       891 ~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~~------~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  891 FQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIVD------MCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHHH------HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            222     22333333332 678999999999999986665555554      3455555553   23577777887777


Q ss_pred             hccC
Q 040073          342 CKFS  345 (407)
Q Consensus       342 ~~~~  345 (407)
                      .-..
T Consensus       959 WF~p  962 (1692)
T KOG1020|consen  959 WFTP  962 (1692)
T ss_pred             hccC
Confidence            6543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		8e-15
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		2e-05
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-05
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		9e-05
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		9e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 7/82 (8%)
Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          E P +F CPISL+LM+DPV VSTG TY+R +I++WL    + TCP +++ L    L   T
Sbjct: 4  EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGL---T 59
Query: 65 PNHTLRRLIQAWCTINACHGIE 86
          PN+ L+ LI  WC  N   GIE
Sbjct: 60 PNYVLKSLIALWCESN---GIE 78

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 5   EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
           E+P +    IS +LMR+P    +GITYDR +IE  L     +  PVT+  L +  L    
Sbjct: 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFDPVTRSPLTQDQL---I 157
Query: 65  PNHTLRRLIQAWCTINA 81
           PN  ++ +I A+   N 
Sbjct: 158 PNLAMKEVIDAFIQENG 174

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 5   EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
           ++P +    IS +LMR+P    +GITYDR +IE  L     +  PVT+  L +  L    
Sbjct: 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQL---I 259
Query: 65  PNHTLRRLIQAWCTINA 81
           PN  ++ +I A+ + N 
Sbjct: 260 PNLAMKEVIDAFISENG 276

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          ++P +    IS +LMR+P    +GITYDR +IE  L    +   PVT+  L +  L    
Sbjct: 1  DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-PVTRSPLTQEQL---I 56
Query: 65 PNHTLRRLIQAWCTINA 81
          PN  ++ +I A+ + N 
Sbjct: 57 PNLAMKEVIDAFISENG 73

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          E+P +    IS +LM +P    +GITYDR +IE  L    +   PVT+  L +  L    
Sbjct: 9  EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFD-PVTRSPLTQDQL---I 64
Query: 65 PNHTLRRLIQAWCTIN 80
          PN  ++ +I A+   N
Sbjct: 65 PNLAMKEVIDAFIQEN 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	1e-34
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	2e-32
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	3e-31
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	9e-28
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	1e-21
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	5e-18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-17
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-13
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-11
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-09
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-07
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	6e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  129 bits (326), Expect = 2e-37
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 7/82 (8%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          E P +F CPISL+LM+DPV VSTG TY+R +I++W     + TCP +++ L    L   T
Sbjct: 4  EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW-LDAGHKTCPKSQETLLHAGL---T 59

Query: 65 PNHTLRRLIQAWCTINACHGIE 86
          PN+ L+ LI  WC     +GIE
Sbjct: 60 PNYVLKSLIALWC---ESNGIE 78

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  125 bits (316), Expect = 1e-34
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
            ++ E+P +    IS +LMR+P    +GITYDR +IE  L     +  PVT+  L +  L
Sbjct: 98  RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR-VGHFDPVTRSPLTQDQL 156

Query: 61  TSTTPNHTLRRLIQAWCTINA 81
               PN  ++ +I A+   N 
Sbjct: 157 ---IPNLAMKEVIDAFIQENG 174

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  116 bits (292), Expect = 2e-32
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 1  MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
          ++  + P  F  P+   LM DPV + +G   DR  I R L    + T P  +Q+L E+ L
Sbjct: 6  IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESML 63

Query: 61 TSTTPNHTLRRLIQAWC 77
              P   L+  IQAW 
Sbjct: 64 ---EPVPELKEQIQAWM 77

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  113 bits (285), Expect = 3e-31
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 1  MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
          ++  + P  F  P+   LM DPV + +G   DR  I R L    + T P  +Q L E+ L
Sbjct: 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTESML 78

Query: 61 TSTTPNHTLRRLIQAWC 77
              P   L+  IQAW 
Sbjct: 79 ---EPVPELKEQIQAWM 92

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  104 bits (261), Expect = 9e-28
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 1  MEEIEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETD 59
              +    FL PI   LM DPV + +  +T DR  I R L +  + T P  +  L    
Sbjct: 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQ 71

Query: 60 LTSTTPNHTLRRLIQAWCTIN 80
          +    PN  L+  IQ W    
Sbjct: 72 I---RPNTELKEKIQRWLAER 89

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 96.4 bits (239), Expect = 1e-21
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETD 59
           +E  +VP  FL P+   +M+DPV + ++ +  DR  I+  L +  ++T P  +  L+  D
Sbjct: 883 LEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLED 940

Query: 60  LTSTTPNHTLRRLIQAWC 77
           +   TPN  LR+ I  + 
Sbjct: 941 V---TPNEELRQKILCFK 955

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 77.7 bits (191), Expect = 5e-18
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 7  PAHFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTC----KNNTCPVTKQVLQETDLT 61
           + F CPI+ + M+ PV     G TY+   I R + +     K   CP       +   +
Sbjct: 5  SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 62 STTPNHTLRRLIQAWC 77
              +  LRR I+   
Sbjct: 65 DLIQDEALRRAIENHN 80

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.6 bits (196), Expect = 6e-17
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 1   MEEIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
            ++ ++P +    IS +LMR+P    +GITYDR +IE  L     +  PVT+  L +  L
Sbjct: 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQL 258

Query: 61  TSTTPNHTLRRLIQAWCTIN 80
               PN  ++ +I A+ + N
Sbjct: 259 ---IPNLAMKEVIDAFISEN 275

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 8  AHFLCPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
          +H LC IS ++ R PV +  +   +++  +E+++        P+T + L   ++
Sbjct: 2  SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYV--KDTGNDPITNEPLSIEEI 53

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 70.0 bits (171), Expect = 4e-13
 Identities = 39/285 (13%), Positives = 105/285 (36%), Gaps = 15/285 (5%)

Query: 99  QIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC 158
           ++ K+LND         K    +  ++ +     + + +   +  +   +  ++   +  
Sbjct: 18  ELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-VETA 74

Query: 159 DEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218
                 L++L+     L +I  + G   + +L+++L         YAI  L ++    + 
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131

Query: 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD 278
            ++         ++V +L   +      +   L++L        +++  +  GG   LV+
Sbjct: 132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVN 189

Query: 279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL 338
           ++   T  ++      VL +L  C+  +  +++ G  +  +   +   S       +  L
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTL 248

Query: 339 CSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383
            ++   +      ++    G++  L  +L  D  +     A  IL
Sbjct: 249 RNLSDAAT-----KQEGMEGLLGTLVQLLGSD-DINVVTCAAGIL 287

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 29/238 (12%)

Query: 100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECD 159
           +V++L       +        L ++T  + +N+  +   G IE L   + ++    D  +
Sbjct: 268 LVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325

Query: 160 EALSILYHL----NVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV 215
            A+  L HL      +E    ++ ++ G   L  ++++L   ++     A + L     +
Sbjct: 326 PAICALRHLTSRHQEAEMAQNAVRLHYG---LPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 216 ADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS-------------------KAALKLLVE 256
                    +Q     +V +L   HQ +Q+ +                   +     L  
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442

Query: 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGA 314
           L     NRI       + + V LL    E  +  +   VL  L +  E    +   GA
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGA 499

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 55/338 (16%), Positives = 105/338 (31%), Gaps = 48/338 (14%)

Query: 75  AWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTG--RKCLRRLRSITLQSERNR 132
           +              + +P + +   ++ L      PS    + CL  LR++   S+   
Sbjct: 204 SRVLKVLSVC----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAAT 256

Query: 133 SCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR 192
                 G +  L  ++   D     C  A  IL +L  +    K +V   G   +E+L+R
Sbjct: 257 KQEGMEGLLGTLVQLLGSDDINVVTC--AAGILSNLTCNNYKNKMMVCQVG--GIEALVR 312

Query: 193 VLKCGNYQS--RSYAIMLLKSI---FEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS 247
            +     +      AI  L+ +    + A+  Q           +V +L     +     
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-- 370

Query: 248 KAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL---------------------LDVTER 286
           KA + L+  L     N     E G +  LV LL                       V   
Sbjct: 371 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430

Query: 287 RVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV-CKFS 345
            + E     L +L R    R  +              +++ ++  +   R+   V C+ +
Sbjct: 431 EIVEGCTGALHILARDVHNRIVIRGLNT-----IPLFVQLLYSPIENIQRVAAGVLCELA 485

Query: 346 ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383
                 + +   G  + L  +L    +      A  +L
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVL 522

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 24/225 (10%), Positives = 61/225 (27%), Gaps = 32/225 (14%)

Query: 101 VKILNDAKKSPSTGRKCLRRLRSITL---QSERNRSCLEAAGAIEFLATIITKSDAGSDE 157
           V+ +  A          +  LR +T    ++E  ++ +     +  +  ++         
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370

Query: 158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217
               + ++ +L +  +    +        +  L+++L   +  ++    M       V  
Sbjct: 371 -KATVGLIRNLALCPANHAPLREQGA---IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426

Query: 218 PF---------------------QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256
                                  +++          V +L       +   + A  +L E
Sbjct: 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCE 483

Query: 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301
           L             G  + L + LL      V      VL  +  
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVLFRMSE 527

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 37/285 (12%), Positives = 104/285 (36%), Gaps = 15/285 (5%)

Query: 99  QIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC 158
           ++ K+LND  +      K    +  ++ +     + + +   +  +   +  ++   +  
Sbjct: 154 ELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-VETA 210

Query: 159 DEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218
                 L++L+     L +I  + G   + +L+ +L         +AI  L ++    + 
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGG---IPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD 278
            ++         ++V +L   +      +   L++L        +++  +  GG   LV+
Sbjct: 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVN 325

Query: 279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL 338
           ++   T  ++      VL +L  C+  +  +++ G  +  +   +   S       +  L
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTL 384

Query: 339 CSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383
            ++   +      ++    G++  L  +L     +     A  IL
Sbjct: 385 RNLSDAAT-----KQEGMEGLLGTLVQLLG-SDDINVVTCAAGIL 423

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 20/293 (6%)

Query: 100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECD 159
           +V +LN  K +          L+ +   ++ ++  + A+G  + L  I+ ++        
Sbjct: 281 MVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLW 337

Query: 160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF 219
               +L  L+V  S   +IV   G   +++L   L   + +     +  L+++   +D  
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGG---MQALGLHLTDPSQRLVQNCLWTLRNL---SDAA 391

Query: 220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDL 279
                 +     +V +L          +   L  L   C   +N++   + GG+  LV  
Sbjct: 392 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT--CNNYKNKMMVCQVGGIEALVRT 449

Query: 280 LLDVTER-RVCELMLNVLDLLCRCAEG----RAELLKHGAGLAVVSKKILRVSHAASDRA 334
           +L   +R  + E  +  L  L    +     +  +  H  GL VV K +   SH    +A
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY-GLPVVVKLLHPPSHWPLIKA 508

Query: 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387
              L               + + G + +L  +L   A   T+ R         
Sbjct: 509 TVGLIRNLALCPANH--APLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQ 558

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 26/243 (10%), Positives = 74/243 (30%), Gaps = 31/243 (12%)

Query: 100 IVKILNDAKKSPSTGRKCLRRLRSIT---LQSERNRSCLEAAGAIEFLATIITKSDAGSD 156
           +V+ +  A          +  LR +T     +E  ++ +     +  +  ++        
Sbjct: 446 LVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505

Query: 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA 216
                + ++ +L +  +    +     +  +  L+++L   +  ++    M   +  +  
Sbjct: 506 I-KATVGLIRNLALCPANHAPLR---EQGAIPRLVQLLVRAHQDTQRRTSMGG-TQQQFV 560

Query: 217 DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE-------------------L 257
           +  ++  + +     +  + RD H          + L V+                   L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620

Query: 258 CPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA 317
                        G  + L +LL    E     +      +L R +E + +  K    + 
Sbjct: 621 AQDKEAAEAIEAEGATAPLTELLHSRNE----GVATYAAAVLFRMSEDKPQDYKKRLSVE 676

Query: 318 VVS 320
           + S
Sbjct: 677 LTS 679

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 39/285 (13%), Positives = 106/285 (37%), Gaps = 15/285 (5%)

Query: 99  QIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDEC 158
           ++ K+LND  +      K    +  ++ +     + + +   +  +   +  ++   +  
Sbjct: 21  ELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-VETA 77

Query: 159 DEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218
                 L++L+     L +I  + G   + +L+++L         YAI  L ++    + 
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD 278
            ++         ++V +L   +      +   L++L        +++  +  GG   LV+
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVN 192

Query: 279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL 338
           ++   T  ++      VL +L  C+  +  +++ G  +  +   +   S       +  L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTL 251

Query: 339 CSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383
            ++   +     ++     G++  L  +L  D  +     A  IL
Sbjct: 252 RNLSDAATKQEGME-----GLLGTLVQLLGSD-DINVVTCAAGIL 290

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 43/265 (16%), Positives = 91/265 (34%), Gaps = 34/265 (12%)

Query: 100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECD 159
           +V++L       +        L ++T  + +N+  +   G IE L   + ++    D  +
Sbjct: 271 LVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328

Query: 160 EALSILYHL----NVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV 215
            A+  L HL      +E    ++ ++ G   L  ++++L   ++     A + L     +
Sbjct: 329 PAICALRHLTSRHQEAEMAQNAVRLHYG---LPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 216 ADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS-------------------KAALKLLVE 256
                    +Q     +V +L   HQ +Q+ +                   +     L  
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGL 316
           L     NRI       + + V LL    E  +  +   VL  L +  E    +   GA  
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGA-- 502

Query: 317 AVVSKKILRVSHAASDRAVRILCSV 341
              +  +  + H+ ++       +V
Sbjct: 503 ---TAPLTELLHSRNEGVATYAAAV 524

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 2   EEIEVPA---HFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTCKNNTCPVT--KQVL 55
           +++++        CPI+ +    P+        +DR  I+ +L       CP     QV+
Sbjct: 171 DDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230

Query: 56  QETDLTSTTPNHTLRRLIQAWCTINACHGIERIPTPQPPVDK 97
              D      +  +    +           E+       +D 
Sbjct: 231 SMRDF---VRDPIMELRCKIA---KMKESQEQDKRSSQAIDV 266

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 40/297 (13%), Positives = 102/297 (34%), Gaps = 14/297 (4%)

Query: 95  VDKTQIVKILNDAKKSPSTGRK--CLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSD 152
           +    I   L    K+ S   +    R L ++    +  R  +   G ++ L  +  +  
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGT 549

Query: 153 AGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKS 211
                   A   L  + ++ +   S       + +  L+ +L+          ++M L +
Sbjct: 550 EKGKRH--ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607

Query: 212 IFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271
           +  + +  +   +K++  ++I   L + H +     +AA + L  L              
Sbjct: 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT---RAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS 331
                + LL +  +          L ++   +    E +   A    +   ++     A 
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 332 -DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV--DASVKTKERAREILKL 385
             R + I+ ++   +A   + +++ +  ++  L  + Q+  D   K +E A + L  
Sbjct: 725 QHRGIVIILNMI--NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 2  EEIEVPAHFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
          E+  +P   LC I   +M D V +   G +Y    I   L     +TCP   Q     D 
Sbjct: 6  EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD- 64

Query: 61 TSTTPNHTLRRLIQAW 76
           +   N  LR+ +  +
Sbjct: 65 -ALIANKFLRQAVNNF 79

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 42/271 (15%), Positives = 100/271 (36%), Gaps = 17/271 (6%)

Query: 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174
            +    L +I   +      +   GAI    +++      +   ++A+  L ++    S 
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--AHISEQAVWALGNIAGDGSA 176

Query: 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSY-----AIMLLKSIFEVADPFQLISVKQEFF 229
            + +VI +G   ++ L+ +L   +  + +          L ++    +P   +   ++  
Sbjct: 177 FRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234

Query: 230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAV-EGGGVSVLVDLLLDVTERRV 288
             +V +L  +          +   +  L      RI+ V + G V  LV LL       V
Sbjct: 235 PTLVRLLHHNDPEVL---ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 291

Query: 289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA 348
              +  + +++    E   +++  GA LAV    +          A   + ++   +   
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKTNIQKEATWTMSNIT--AGRQ 348

Query: 349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERA 379
             +Q+++  G+V    + +   A  KT++ A
Sbjct: 349 DQIQQVVNHGLV-PFLVGVLSKADFKTQKEA 378

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 1  MEEIEVPAHFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTCKNNTCPVTKQVLQETD 59
           E+  +P   LC I   +M D V +   G +Y    I   L     +TCP   Q     D
Sbjct: 7  GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

Query: 60 LTSTTPN 66
            S   +
Sbjct: 67 ALSGPSS 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 62/419 (14%), Positives = 120/419 (28%), Gaps = 116/419 (27%)

Query: 41  FTCKNNTCPVTKQVL--QETD--LTSTTPNHTLRRLIQAWC------------------- 77
           F CK+    + K +L  +E D  + S        RL   W                    
Sbjct: 33  FDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRI 89

Query: 78  ----TINACHGIERIPTPQPPVDKTQIVKILNDA---KKSPSTGRKCLRRLRS--ITLQS 128
                ++     +R P+    +   Q  ++ ND     K   +  +   +LR   + L+ 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 129 ERN----------RSCLEAAGAIEFLATIITKSDA------GSDECDEAL-----SILYH 167
            +N          ++ + A                       +    E +      +LY 
Sbjct: 150 AKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 168 LNVSESYLKSIVIN---NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF-EVADPFQLIS 223
           ++ + +       N           L R+LK     S+ Y   LL  +   V +      
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYENCLL--VLLNVQNA----- 256

Query: 224 VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR--IKAVEGGGVS--VLVDL 279
                  +  N       F+        K+L+      R +     +     +   L   
Sbjct: 257 -------KAWNA------FNLSC-----KILLT----TRFKQVTDFLSAATTTHISLDHH 294

Query: 280 LLDVTERRVCELMLNVLDLLCRCAEGRAELLK-HGAGLAVVSKKILRVSHAASDRAVRIL 338
            + +T   V  L+L  LD  CR  +   E+L  +   L+++++  +R   A  D    + 
Sbjct: 295 SMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHVN 351

Query: 339 CSVCKFSATARVLQEMLQVGVVSKL---CLVLQVDASVKTKERAREILKLNARAWRDSP 394
           C   K +        +L+     K+     V               ++      W D  
Sbjct: 352 CD--KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLI------WFDVI 400

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 5  EVPAHFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
           +     C I  +     + +      Y  + I ++L       CP     + E DL   
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL--SYKTQCPTCCVTVTEPDL--- 72

Query: 64 TPNHTLRRLIQAW 76
            N  L  L+++ 
Sbjct: 73 KNNRILDELVKSL 85

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 33/264 (12%), Positives = 86/264 (32%), Gaps = 12/264 (4%)

Query: 121 LRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180
           L +I   +      +  A A+     ++       +  ++A+  L ++    +  +  V+
Sbjct: 155 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--VEVKEQAIWALGNVAGDSTDYRDYVL 212

Query: 181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH 240
                 +E ++ +           A   L ++     P    SV  +    +  ++    
Sbjct: 213 QCN--AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM- 269

Query: 241 QFSQQASKAALKLLVELCPWGRNRIKA-VEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299
               +    A   +  L    +  I+A ++      LV+LL   +       +  V +++
Sbjct: 270 --DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327

Query: 300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGV 359
                    ++  G  L  +   +          A   + ++   +      Q ++   +
Sbjct: 328 TGNDLQTQVVINAGV-LPALRLLLSSPKENIKKEACWTISNITAGNTEQI--QAVIDANL 384

Query: 360 VSKLCLVLQVDASVKTKERAREIL 383
           +  L  +L+  A  KTK+ A   +
Sbjct: 385 IPPLVKLLE-VAEYKTKKEACWAI 407

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 40/268 (14%), Positives = 97/268 (36%), Gaps = 15/268 (5%)

Query: 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174
            +    L +I   +      +  AGA+     +++      D  ++A+  L ++    + 
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTM 140

Query: 175 LKSIVINNGEEFLESLMRVLKCGNYQS-RSYAIMLLKSIFEVADPFQLISVKQEFFTEIV 233
            +  V++     L  L+++    N  +    A+  L ++     P    +        + 
Sbjct: 141 CRDYVLDCN--ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLS 198

Query: 234 NVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAV-EGGGVSVLVDLLLDVTERRVCELM 292
            +L             A   L  L     ++I+AV + G    LV+LL+    + V   +
Sbjct: 199 WLLFVSDT---DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255

Query: 293 LNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR-AVRILCSVCKFSATARVL 351
             V +++         +L   A  +++   +L     +  + A   + ++   +     +
Sbjct: 256 RAVGNIVTGDDIQTQVILNCSALQSLL--HLLSSPKESIKKEACWTISNIT--AGNRAQI 311

Query: 352 QEMLQVGVVSKLCLVLQVDASVKTKERA 379
           Q ++   +   L  +LQ  A  +T++ A
Sbjct: 312 QTVIDANIFPALISILQ-TAEFRTRKEA 338

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 24/184 (13%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECD 159
           +V++L             LR + +I    +     +    A++ L  +++       +  
Sbjct: 239 LVELLMH--NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK-- 294

Query: 160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF 219
           EA   + ++          VI+       +L+ +L+   +++R  A   + +        
Sbjct: 295 EACWTISNITAGNRAQIQTVIDAN--IFPALISILQTAEFRTRKEAAWAITNATSGGSAE 352

Query: 220 QLIS-VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD 278
           Q+   V+      + ++L        Q +   L+ ++ L      +     G G++    
Sbjct: 353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG----EQEAKRNGTGINPYCA 408

Query: 279 LLLD 282
           L+ +
Sbjct: 409 LIEE 412

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 7/191 (3%)

Query: 110 SPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN 169
           +    ++ L  L +I          +  AGA+  L  +++  +    +  EAL  L ++ 
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ--EALWALSNIA 124

Query: 170 VSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF 229
              +     VI+ G   L +L+++L   N Q    A+  L +I    +      +     
Sbjct: 125 SGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182

Query: 230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVC 289
             +V +L   ++   Q +  AL  +       +  +   E G +  L  L     E ++ 
Sbjct: 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV--KEAGALEKLEQLQSHENE-KIQ 239

Query: 290 ELMLNVLDLLC 300
           +     L+ L 
Sbjct: 240 KEAQEALEKLQ 250

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 5  EVPAHFLCPISLQLMRDPVTVST-GITYDRVNIERWLFTCKNNTCPVTKQVLQETD-LTS 62
          E+  H +C +      D  T+     ++ +  I R+L    +  CP+    + +T  L +
Sbjct: 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKTRPLLN 68

Query: 63 TTPNHTLRRLIQ 74
             + TL+ ++ 
Sbjct: 69 IRSDKTLQDIVY 80

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
           + + + CPI L  +R+ V    G  + +  I + +     + CPV  ++L E  L    
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQL---F 69

Query: 65 PNHTLRRLIQA---WCTINACH 83
          P++  +R I +    C    C 
Sbjct: 70 PDNFAKREILSLMVKCPNEGCL 91

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 7/222 (3%)

Query: 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQA 246
           L  ++ +L       +S A   L+ +    D  +    K +    +V +L    +     
Sbjct: 50  LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109

Query: 247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306
           +  ALK +        N+I      GV  LV LL    +  + E++   L  L      +
Sbjct: 110 ACGALKNIS-FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168

Query: 307 AELLKHGAGLAVVSKKILRVS---HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKL 363
            E++ H          I           D   R +      + TA  L+ +      ++ 
Sbjct: 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228

Query: 364 CLVLQ---VDASVKTKERAREILKLNARAWRDSPCVPAHLLS 402
            L      VDA +   +        +++   +  C+  +L  
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174
           +  LR+L  I          +  AGA+  L  +++  +    +  EAL  L ++    + 
Sbjct: 30  QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ--EALWALSNIASGGNE 87

Query: 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN 234
               VI+ G   L +L+++L   N Q    A+  L +I    +      +       +V 
Sbjct: 88  QIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAV-EGGGVSVLVDLLLDVTERRVCELML 293
           +L      ++Q  + AL  L  +   G  + +AV E G +  L  L     E ++ +   
Sbjct: 146 LLSSP---NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQKEAQ 201

Query: 294 NVLDLLC 300
             L+ L 
Sbjct: 202 EALEKLQ 208

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 9   HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHT 68
            F+C    +L+  PVT        +  ++R  F  +  +CP  +  L +       PN  
Sbjct: 78  SFMCVCCQELVYQPVTTECFHNVCKDCLQRS-FKAQVFSCPACRHDLGQNY--IMIPNEI 134

Query: 69  LRRLIQ 74
           L+ L+ 
Sbjct: 135 LQTLLD 140

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 28/284 (9%)

Query: 116 KCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175
           + L  L  I    E      EA             +      C  A+ +L  L+  E + 
Sbjct: 124 RVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC-PAVCVLMKLSFDEEHR 182

Query: 176 KSIVINNGEEFLESLMRVLKCGNYQS-----------RSYAIMLLKSI-FEVADPFQLIS 223
            ++    G   L+++  +L+                 R YA M L ++ F        + 
Sbjct: 183 HAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239

Query: 224 VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV 283
             +     +V  L+   +  QQ   + L+ L        ++    E G V  L++  L+V
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEV 298

Query: 284 TERRVCELMLNVL-DLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR-------AV 335
            +    + +L+ L +L   C E +A++      LA +   +   S   +          +
Sbjct: 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 358

Query: 336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERA 379
           R + S+   +   R +  + +   +  L   L+   S+     A
Sbjct: 359 RNVSSLIATNEDHRQI--LRENNCLQTLLQHLK-SHSLTIVSNA 399

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.98
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.84
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.83
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.82
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.78
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.74
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.68
3grl_A	651	General vesicular transport factor P115; vesicle t	99.67
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.64
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.63
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.61
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.58
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.56
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.55
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.5
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.5
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.49
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.48
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.48
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.47
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.47
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.47
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.46
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.46
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.45
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.45
3grl_A	651	General vesicular transport factor P115; vesicle t	99.45
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.44
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.43
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.39
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.39
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.39
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.36
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.36
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.34
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.33
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.31
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.3
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.21
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.2
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.2
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.2
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.2
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.17
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.1
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.1
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.04
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.03
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.02
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.97
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.96
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.93
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.91
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.86
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.86
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.83
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.82
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.81
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.81
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.74
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.71
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.7
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.67
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.66
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.56
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.55
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.54
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.47
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.4
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.39
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.39
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.37
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.36
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.34
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.26
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.26
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.25
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.23
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.22
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.19
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.1
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.02
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.98
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.95
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.79
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.78
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.68
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.5
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.42
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.14
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.08
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.01
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.0
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.81
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.79
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.77
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.76
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.32
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.27
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.13
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.04
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.88
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.81
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.81
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.76
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.38
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.33
3nw0_A	238	Non-structural maintenance of chromosomes element	94.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.67
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.5
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.42
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.05
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.96
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.86
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.07
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.66
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	90.88
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	90.52
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.49
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.46
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.32
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	89.63
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.95
2x1g_F	971	Cadmus; transport protein, developmental protein,	88.73
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.42
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	88.35
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	88.24
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	87.52
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.82
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	86.19
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	86.15
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.47
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	85.23
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.96
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.84
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	83.67
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	83.29
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	82.01
2x19_B	963	Importin-13; nuclear transport, protein transport;	81.75
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	80.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	80.59

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=7.2e-33  Score=266.58  Aligned_cols=268  Identities=13%  Similarity=0.107  Sum_probs=229.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccC---------CCCchHHHHHHHHHhcCCChhHHHhHhhcc
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSD---------AGSDECDEALSILYHLNVSESYLKSIVINN  182 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~---------~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~  182 (407)
                      +.+..|++.|.+++.+ +++|+.|++.|+++.|+.+|..+.         .+..++++|+++|.+|+.+++.++..+...
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            5567899999999987 899999999999999999996321         112469999999999999887778877655


Q ss_pred             chhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C-CchhhhhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCC
Q 040073          183 GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A-DPFQLISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       183 gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      +| +||.|+.+|++++.++++.|+++|++|+.. + +++..+. +.|+|++||++| +++   +.++++.|+.+|+||+.
T Consensus       126 ~G-aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~---~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          126 KG-CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVK---KESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HH-HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHT
T ss_pred             CC-cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHHc
Confidence            54 899999999999999999999999999875 2 3445555 468999999975 455   88999999999999999


Q ss_pred             -CCchHHHHH-hcCchHHHHHHhhcccch---hHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchh
Q 040073          260 -WGRNRIKAV-EGGGVSVLVDLLLDVTER---RVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAA  330 (407)
Q Consensus       260 -~~~n~~~~v-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~  330 (407)
                       .++|+..++ ..|+||.|+++|..+.+.   ++++.|+++|.+|+.    ++++|..+.+ .|++|.|+++|.+++...
T Consensus       201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v  279 (354)
T 3nmw_A          201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTI  279 (354)
T ss_dssp             TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHH
T ss_pred             cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHH
Confidence             667899988 799999999999876322   589999999999995    7888888877 689999999888888899


Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++.|+.+|++++..  +.+.+..+++.|+++.|+.+|++ +++++|+.|+++|..|...
T Consensus       280 ~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          280 VSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence            99999999999964  34568889999999999999986 4899999999999999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.98  E-value=1.8e-31  Score=264.43  Aligned_cols=265  Identities=13%  Similarity=0.121  Sum_probs=226.5

Q ss_pred             HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc-------C--CCCchHHHHHHHHHhcCCChhHHHhHhhccchh
Q 040073          115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS-------D--AGSDECDEALSILYHLNVSESYLKSIVINNGEE  185 (407)
Q Consensus       115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-------~--~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~  185 (407)
                      ..|++.|.+++.+ +++|+.|++.|++++|+.+|...       .  ....++++|+++|.+|+.+++.++..+...+| 
T Consensus       166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G-  243 (458)
T 3nmz_A          166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG-  243 (458)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC-
Confidence            4899999999775 99999999999999999999632       0  11235899999999999988777777765554 


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C-CchhhhhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCC-CC
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A-DPFQLISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCP-WG  261 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~-~~  261 (407)
                      +||.|+.+|++++.++++.|+++|++|+.. + +++..+. +.|+|++||++| +++   +.++++.|+.+|+||+. .+
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~-~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHH-HTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH-HcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCH
Confidence            899999999999999999999999999874 2 3445555 468999999975 555   88999999999999999 77


Q ss_pred             chHHHHH-hcCchHHHHHHhhcccch---hHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          262 RNRIKAV-EGGGVSVLVDLLLDVTER---RVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       262 ~n~~~~v-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      +|+..++ +.|++|.|+++|..+.+.   ++++.|+++|.+|+.    +++++..+++ .|++|.|+.+|.+++...++.
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~  398 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSN  398 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHH
Confidence            8999998 799999999999876322   489999999999994    7888888887 689999999888888899999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      |+.+|++++..  +.+.+..+++.|+++.|+.+|++ +++++++.|+++|..|...
T Consensus       399 A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          399 ACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence            99999999964  34578889999999999999985 5899999999999999874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.3e-29  Score=250.31  Aligned_cols=283  Identities=13%  Similarity=0.085  Sum_probs=231.4

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS  177 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  177 (407)
                      .++.+++.|.+++ +.|..|+..|++++.+++.++..+++.|+||.|+++|.+++.  .+++.|+++|.+|+.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--NVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHHHH
Confidence            4788999999887 899999999999998888889999999999999999997654  5699999999999988667888


Q ss_pred             HhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc--------cCC-----CCC
Q 040073          178 IVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR--------DHH-----QFS  243 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~~-----~~~  243 (407)
                      .+.+.|  ++|.|+.+|+ +++.++++.|+++|.+|+..++++..+. . |++++|+++|.        ++.     ..+
T Consensus        81 ~i~~~G--~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           81 ETRRQN--GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-A-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHTT--CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-H-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHcC--CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH-h-ccHHHHHHHHhccccccccCccchhccccc
Confidence            888877  6999999999 8899999999999999998866666565 4 88999999993        220     014


Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHh-------------
Q 040073          244 QQASKAALKLLVELCPWGRNRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAE-------------  304 (407)
Q Consensus       244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~-------------  304 (407)
                      .++.+.|+++|+||+..++++..+++. |++++|+.+|.++     .+..+++.++++|.+|+...+             
T Consensus       157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            567779999999999998899999997 9999999999862     245788999999999973211             


Q ss_pred             --------------------------------------hHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccC
Q 040073          305 --------------------------------------GRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       305 --------------------------------------~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~  345 (407)
                                                            +...++ +.++++.|+.+|... ++..++.|+++|+++|.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~  315 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence                                                  111122 246788899988765 4789999999999999865


Q ss_pred             Cch--HHHHHHH-HhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          346 ATA--RVLQEML-QVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       346 ~~~--~~~~~~~-~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ...  ...+.++ +.|+++.|+.+|++ ++.+++++|+++|+.|.+.
T Consensus       316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          316 GLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS
T ss_pred             CcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhcC
Confidence            442  2223444 58999999999985 5899999999999999773

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=243.45  Aligned_cols=286  Identities=16%  Similarity=0.144  Sum_probs=234.2

Q ss_pred             ChhhHHHHHHHhcCC------------C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcH----------HHHHHHhhccC
Q 040073           96 DKTQIVKILNDAKKS------------P-STGRKCLRRLRSITLQSERNRSCLEAAGAI----------EFLATIITKSD  152 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~------------~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~~~~  152 (407)
                      +.+-++.|++.|..+            + +.+.+|+++|.+++...++.....++.|++          +.+++++.+..
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            456688889888742            2 778999999999999988888888888888          66777777653


Q ss_pred             CCCc-----hH-------HHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-----------CChhHHHHHHHHH
Q 040073          153 AGSD-----EC-------DEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-----------GNYQSRSYAIMLL  209 (407)
Q Consensus       153 ~~~~-----~~-------~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-----------~~~~~~~~a~~~L  209 (407)
                      .+.+     +.       .+|+++|.+++.++ ++++.+.+.|  +++.|+.+|..           .+..++.+|+++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL  224 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL  224 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTT--HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCC--CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence            1111     23       39999999998774 5788888877  69999999952           3467899999999


Q ss_pred             HHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhcccch
Q 040073          210 KSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTER  286 (407)
Q Consensus       210 ~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~  286 (407)
                      .+|+..++..+ .+....|+|++||.+|+++   ++++++.|+++|+||+..  +++|..+++.|+||+|+++|....+.
T Consensus       225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~  301 (458)
T 3nmz_A          225 TNLTFGDVANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE  301 (458)
T ss_dssp             HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH
T ss_pred             HHHhCCCcccHHHHHHcCCcHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH
Confidence            99998766444 4444567899999999988   999999999999999984  46899999999999999986553367


Q ss_pred             hHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc----hhhHHHHHHHHHHhcc-CCchHHHHHHHHhChH
Q 040073          287 RVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH----AASDRAVRILCSVCKF-SATARVLQEMLQVGVV  360 (407)
Q Consensus       287 ~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~----~~~e~a~~~L~~l~~~-~~~~~~~~~~~~~g~i  360 (407)
                      .+++.|+.+|++|+. ++++|.+++...|++|.|+++|...++    ..++.|+.+|++|+.. ..+.+.+..+++.|++
T Consensus       302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i  381 (458)
T 3nmz_A          302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL  381 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence            899999999999999 788999998668999999998776554    3799999999999962 1133468888999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          361 SKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       361 ~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.|+.+|++ ++..+++.|+++|..|..
T Consensus       382 ~~Lv~LL~~-~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          382 QTLLQHLKS-HSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHHSSC-SCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcC-CChHHHHHHHHHHHHHHc
Confidence            999999985 589999999999999873

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=1.7e-28  Score=248.35  Aligned_cols=288  Identities=11%  Similarity=0.056  Sum_probs=231.9

Q ss_pred             CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-h
Q 040073           95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS-E  172 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~  172 (407)
                      .....|+.+++.|.+++ +.|..|+..|++++..++++|..+++.|+||.|+++|.+++.  .++++|+++|.+|+.+ +
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~--~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK--EVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--HHHHHHHHHHHHHTSSSC
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--HHHHHHHHHHHHHHccCC
Confidence            45667999999999888 889999999999999889999999999999999999998765  5799999999999985 4


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc---C---------
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD---H---------  239 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~---------  239 (407)
                      ++++..|.+.|  +|+.|+.+|++ ++.+++++|+.+|++|+..++++..++.  |++++|++++..   +         
T Consensus       123 ~~nk~~I~~~G--aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          123 QDNKIAIKNCD--GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC-------
T ss_pred             HHHHHHHHHcC--CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccc
Confidence            56888888887  69999999997 5788999999999999998888887773  569999998720   0         


Q ss_pred             ---CCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHhhHH--
Q 040073          240 ---HQFSQQASKAALKLLVELCPWGR-NRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAEGRA--  307 (407)
Q Consensus       240 ---~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~~r~--  307 (407)
                         +..+.+++++|+++|+||+...+ +|..+++. |++++|+.+|.+.     .+...++.|+++|.+|+...+...  
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~  278 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ  278 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence               00157999999999999999765 58889884 6778999999752     256789999999999997632110  


Q ss_pred             -----H---------HHhcc---------CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCc--hHHHHHHHHhChHH
Q 040073          308 -----E---------LLKHG---------AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSAT--ARVLQEMLQVGVVS  361 (407)
Q Consensus       308 -----~---------i~~~~---------g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~--~~~~~~~~~~g~i~  361 (407)
                           .         .....         ++|+.|+.+|... ++..+|.|+.+|++||.+...  ...+..+.+.|+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                 0         01112         3456778877544 588999999999999975432  12333444579999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          362 KLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       362 ~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .|+.+|+++ ++.+++.|.++|+.|+..
T Consensus       359 ~Lv~LL~s~-~~~v~~~A~~aL~nLs~~  385 (584)
T 3l6x_A          359 AIADLLTNE-HERVVKAASGALRNLAVD  385 (584)
T ss_dssp             HHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence            999999954 899999999999999874

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.96  E-value=6.9e-28  Score=244.12  Aligned_cols=282  Identities=16%  Similarity=0.192  Sum_probs=241.8

Q ss_pred             CChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           95 VDKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      ++.+.|+.|++.|+.++  ..|.+|+++|.+++..+++++..+++.|+||.|+++|.+++.  .+++.|+++|.+++.+.
T Consensus        97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B           97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCC
Confidence            34678999999997544  789999999999999999999999999999999999998765  57999999999999988


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHH
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS  247 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  247 (407)
                      +..+..+.+.|  +++.|+.+|.+.+     .....+++++|.+++........+....|+++.|+.+|.++   +++++
T Consensus       175 ~~~r~~v~~~G--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~  249 (510)
T 3ul1_B          175 SAFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVL  249 (510)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHH
T ss_pred             HHHHHHHHHcC--ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHH
Confidence            77888888877  6999999998654     34678999999999987766655555568999999999998   99999


Q ss_pred             HHHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHc
Q 040073          248 KAALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILR  325 (407)
Q Consensus       248 ~~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~  325 (407)
                      ..|+++|.+|+....++ ..+++.|+++.|+++|.+. +..++..++.+|.+++...+ .+..+++ .|+++.|+.+|.+
T Consensus       250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~  327 (510)
T 3ul1_B          250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTN  327 (510)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTC
T ss_pred             HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcC
Confidence            99999999999876654 4557899999999999986 78999999999999987654 4555555 6899999998777


Q ss_pred             CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          326 VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       326 ~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .++..++.|+.+|.+++.+..  ..+..+++.|+++.|+.+|++ ++..+|+.|+++|..+..
T Consensus       328 ~~~~v~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          328 PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence            778899999999999998543  467888899999999999985 589999999999998865

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=3.3e-27  Score=246.53  Aligned_cols=282  Identities=14%  Similarity=0.129  Sum_probs=240.2

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-----------------------------hHH---HHHHhcCcHH
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-----------------------------RNR---SCLEAAGAIE  142 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-----------------------------~~r---~~i~~~G~i~  142 (407)
                      +.+.|+.|+..|++.+ ..++.|++.|.+++...+                             .++   +.++++|++|
T Consensus       419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            4678999999998877 889999999999997531                             233   7888999999


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073          143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI  222 (407)
Q Consensus       143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  222 (407)
                      .|+.+|++++.  .++++|+++|.|++.+.+ ++..+.+.|  +++.|+.+|++++...+++|+++|.+|+...+....+
T Consensus       499 ~LV~LL~s~s~--~vqe~Aa~aL~NLA~d~~-~r~~Vv~~G--aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~  573 (810)
T 3now_A          499 ALCALAKTESH--NSQELIARVLNAVCGLKE-LRGKVVQEG--GVKALLRMALEGTEKGKRHATQALARIGITINPEVSF  573 (810)
T ss_dssp             HHHHHHTCCCH--HHHHHHHHHHHHHHTSHH-HHHHHHHTT--HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             HHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHCC--CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence            99999998765  569999999999997654 777777777  7999999999999999999999999998765544333


Q ss_pred             hc--hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073          223 SV--KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL  299 (407)
Q Consensus       223 ~~--~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  299 (407)
                      ..  ..|++++|+.+|..+  .+...+..|+++|.||+.. ++++..++++|+++.|+++|.++ +..+++.|+.+|.+|
T Consensus       574 ~~~~~~~aIppLv~LL~~~--~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NL  650 (810)
T 3now_A          574 SGQRSLDVIRPLLNLLQQD--CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNL  650 (810)
T ss_dssp             TTHHHHHTHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHH
T ss_pred             cchhhhcHHHHHHHHhCCC--CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            21  246899999999865  2445567899999999996 46899999999999999999987 789999999999999


Q ss_pred             hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH-hChHHHHHHHHhcCCCHHHHHH
Q 040073          300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      +.+++.+..++...|+++.|+.++...+...++.|+++|++++.++.  ...+.+++ .|++++|+.+|++ ++.+.|+.
T Consensus       651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~--~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~  727 (810)
T 3now_A          651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV--KCCEKILAIASWLDILHTLIAN-PSPAVQHR  727 (810)
T ss_dssp             TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH--HHHHHHHTSTTHHHHHHHHHTC-SSHHHHHH
T ss_pred             hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHHHcCCHHHHHHHHCC-CCHHHHHH
Confidence            99999998888546889999997777678999999999999998533  35788888 8999999999995 59999999


Q ss_pred             HHHHHHHHHh
Q 040073          379 AREILKLNAR  388 (407)
Q Consensus       379 A~~lL~~l~~  388 (407)
                      |.+.|..+..
T Consensus       728 A~~aL~NL~~  737 (810)
T 3now_A          728 GIVIILNMIN  737 (810)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988865

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=1.4e-27  Score=238.63  Aligned_cols=282  Identities=13%  Similarity=0.114  Sum_probs=226.2

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh-ccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT-KSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      +.+.|+.|++.|++++ ..+..|++.|++++.+++++|..+++.|+||.|+++|. +++.  .++++|+++|.+|+.++ 
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--~~~~~a~~aL~nLa~~~-  118 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--EIQKQLTGLLWNLSSTD-  118 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--HHHHHHHHHHHHHHTSS-
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--HHHHHHHHHHHHHhcCH-
Confidence            4678999999999887 88999999999999988999999999999999999998 5443  56999999999999884 


Q ss_pred             HHHhHhhccchhhHHHHHHHHh--------cC--------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc
Q 040073          174 YLKSIVINNGEEFLESLMRVLK--------CG--------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR  237 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~  237 (407)
                      +++..+.+ |  +++.|+.+|.        ++        +.++..+|+++|++|+..++++..+....|++++|+.+|+
T Consensus       119 ~~~~~i~~-g--~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~  195 (457)
T 1xm9_A          119 ELKEELIA-D--ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             STHHHHHH-H--HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred             HhHHHHHh-c--cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence            56776766 6  7999999993        33        3445569999999999875555555443388999998876


Q ss_pred             cC------C-C---------------------------------------------------------------------
Q 040073          238 DH------H-Q---------------------------------------------------------------------  241 (407)
Q Consensus       238 ~~------~-~---------------------------------------------------------------------  241 (407)
                      ++      + .                                                                     
T Consensus       196 ~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (457)
T 1xm9_A          196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG  275 (457)
T ss_dssp             HHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred             hhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence            30      0 0                                                                     


Q ss_pred             --------------------CCHHHHHHHHHHHHHhCCCCch------HHHHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073          242 --------------------FSQQASKAALKLLVELCPWGRN------RIKAVEGGGVSVLVDLLLDVTERRVCELMLNV  295 (407)
Q Consensus       242 --------------------~~~~~~~~A~~aL~~L~~~~~n------~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~  295 (407)
                                          .++..++.|+++|.||+.....      +..+.++|++|.|+++|.++ +.+++..|+++
T Consensus       276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~a  354 (457)
T 1xm9_A          276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASL  354 (457)
T ss_dssp             GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHH
Confidence                                1356778889999999985532      22334689999999999997 78999999999


Q ss_pred             HHHHhcCHhhHHHHHhccCchHHHHHHHHcCCc------hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc
Q 040073          296 LDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH------AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV  369 (407)
Q Consensus       296 L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~------~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~  369 (407)
                      |.+|+.+.+.+..+..  +++|.|+++|...++      +....++.+|.++...+.  +....+.+.|++++|+.++.+
T Consensus       355 L~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~--~~~~~i~~~g~l~~L~~L~~~  430 (457)
T 1xm9_A          355 LSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP--QLAKQYFSSSMLNNIINLCRS  430 (457)
T ss_dssp             HHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT--HHHHHHCCHHHHHHHHHHHHC
T ss_pred             HHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHcCCHHHHHHHHcC
Confidence            9999999888877654  689999997766532      456688889999987544  368888899999999999985


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 040073          370 DASVKTKERAREILKLNAR  388 (407)
Q Consensus       370 ~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.+++++++|.++|..+..
T Consensus       431 ~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          431 SASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTSS
T ss_pred             CCcHHHHHHHHHHHHHHHc
Confidence            4389999999999987543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=6.9e-27  Score=237.89  Aligned_cols=281  Identities=16%  Similarity=0.188  Sum_probs=242.2

Q ss_pred             ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      +.+.|+.|++.|..++  ..|..|+++|.+++..+++++..+++.|+||.|+.+|.+++.  .+++.|+++|.+|+.+++
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--~v~e~A~~aL~nLa~~~~  194 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HISEQAVWALGNIAGAGS  194 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhccCH
Confidence            4678999999997543  789999999999999999999999999999999999998876  579999999999998887


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      ..+..+.+.|  +++.|+.+|...+     .....+++++|.+++...+....+....|+++.|+.+|.++   +++++.
T Consensus       195 ~~r~~i~~~g--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~  269 (529)
T 3tpo_A          195 AFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLA  269 (529)
T ss_dssp             HHHHHHHHTT--CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHH
T ss_pred             HHHHHHHHcC--CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHH
Confidence            8888888877  6999999998643     34678999999999987766555555568899999999998   999999


Q ss_pred             HHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcC
Q 040073          249 AALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRV  326 (407)
Q Consensus       249 ~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~  326 (407)
                      .|+++|.+|+....++ ..+++.|+++.|+++|.+. +..++..++.+|.+|+.+.+ .+..++. .|+++.|+.++.+.
T Consensus       270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~  347 (529)
T 3tpo_A          270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNP  347 (529)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCS
T ss_pred             HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCC
Confidence            9999999999976654 5567899999999999986 78999999999999987554 4555665 68999999988777


Q ss_pred             CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          327 SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       327 s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ++..++.|+.+|.+++.+..  .....+++.|+++.|+.+|++ ++..+|+.|+++|..+..
T Consensus       348 ~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          348 KTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             SHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence            78899999999999998644  467888899999999999985 589999999999988865

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=5.5e-28  Score=232.52  Aligned_cols=244  Identities=13%  Similarity=0.076  Sum_probs=207.9

Q ss_pred             ChhhHHHHHHHhcC-----------CC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHH
Q 040073           96 DKTQIVKILNDAKK-----------SP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEAL  162 (407)
Q Consensus        96 ~~~~i~~ll~~L~~-----------~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~  162 (407)
                      +.+.++.|+..|..           .+ ..|..|++.|++++..++.+|..+.. .|+||.|+++|.+++.  .+++.|+
T Consensus        71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~  148 (354)
T 3nmw_A           71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQVIA  148 (354)
T ss_dssp             HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHH
T ss_pred             HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--HHHHHHH
Confidence            45778888888742           12 67899999999999988889998875 5669999999997665  5799999


Q ss_pred             HHHHhcCCC-hhHHHhHhhccchhhHHHHHHHH-hcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccC
Q 040073          163 SILYHLNVS-ESYLKSIVINNGEEFLESLMRVL-KCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDH  239 (407)
Q Consensus       163 ~~L~~L~~~-~~~~~~~i~~~gg~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~  239 (407)
                      ++|.+|+.+ ++.++..+.+.|  +++.|+++| ++++.++++.|+.+|++|+.. ++++..+....|+++.|+++|..+
T Consensus       149 ~aL~nLs~~~~~~~k~~i~~~G--~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~  226 (354)
T 3nmw_A          149 SVLRNLSWRADVNSKKTLREVG--SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  226 (354)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHHhccCCHHHHHHHHHCC--CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence            999999985 456788888777  699999975 567899999999999999984 456667764579999999999876


Q ss_pred             CCCCH----HHHHHHHHHHHHhCC----CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHH
Q 040073          240 HQFSQ----QASKAALKLLVELCP----WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELL  310 (407)
Q Consensus       240 ~~~~~----~~~~~A~~aL~~L~~----~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~  310 (407)
                         ++    ++++.|+++|+||+.    .++++..+++.|++|.|+++|.++ +..+++.|+++|.+|+. +++.+..++
T Consensus       227 ---~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~  302 (354)
T 3nmw_A          227 ---SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALW  302 (354)
T ss_dssp             ---CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             ---CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence               33    689999999999995    778999999999999999999987 78899999999999995 688888888


Q ss_pred             hccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCch
Q 040073          311 KHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA  348 (407)
Q Consensus       311 ~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~  348 (407)
                      + .|+||.|++++...++..++.|+.+|.+|+.+.+++
T Consensus       303 ~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          303 D-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             H-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             H-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            7 689999999877778899999999999999987653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=1.1e-26  Score=235.29  Aligned_cols=281  Identities=13%  Similarity=0.123  Sum_probs=226.8

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      +.+.|+.|++.|.+++ +.|..|+++|++++.. +++||..|++.|+||.|+++|.+..+ ..++++|+++|++|+.+++
T Consensus        88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-~~~~e~aa~aL~nLS~~~~  166 (584)
T 3l6x_A           88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-MDLTEVITGTLWNLSSHDS  166 (584)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-HHHHHHHHHHHHHHTTSGG
T ss_pred             HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCCch
Confidence            4678999999999888 9999999999999985 68999999999999999999997543 2459999999999998764


Q ss_pred             HHHhHhhccchhhHHHHHHHHh------------------cCChhHHHHHHHHHHHhhccCCc-hhhhhchhhhHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLK------------------CGNYQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTEIVN  234 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~  234 (407)
                       ++..|.+ +  +++.|+++|.                  ..+.+++++|+++|+||+...++ +..+....|+++.||.
T Consensus       167 -~k~~I~~-~--alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~  242 (584)
T 3l6x_A          167 -IKMEIVD-H--ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF  242 (584)
T ss_dssp             -GHHHHHH-H--THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHH
T ss_pred             -hhHHHHh-c--cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHH
Confidence             5666664 4  5999999872                  12468999999999999987654 5555555566667776


Q ss_pred             Hccc-------------------------------------------------------------------------CCC
Q 040073          235 VLRD-------------------------------------------------------------------------HHQ  241 (407)
Q Consensus       235 lL~~-------------------------------------------------------------------------~~~  241 (407)
                      +|++                                                                         .  
T Consensus       243 ~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--  320 (584)
T 3l6x_A          243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--  320 (584)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC--
T ss_pred             HHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--
Confidence            6542                                                                         1  


Q ss_pred             CCHHHHHHHHHHHHHhCCCCc-----hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCch
Q 040073          242 FSQQASKAALKLLVELCPWGR-----NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGL  316 (407)
Q Consensus       242 ~~~~~~~~A~~aL~~L~~~~~-----n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i  316 (407)
                      .++.++++|++||.||+....     ++..+.++|++|.|+++|..+ +..+++.|+++|.+|+.+..++..| . .++|
T Consensus       321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~i  397 (584)
T 3l6x_A          321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI-G-KHAI  397 (584)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH-H-hCCH
Confidence            145677888888888876542     344455689999999999987 7899999999999999998888766 4 4789


Q ss_pred             HHHHHHHHcC--------CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 040073          317 AVVSKKILRV--------SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD-ASVKTKERAREILKLNA  387 (407)
Q Consensus       317 ~~Lv~~l~~~--------s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~  387 (407)
                      |.||.+|...        +......|+.+|.+|+..  +.+.++.++++|+|++|+.+++++ .+++.++.|+.+|..+.
T Consensus       398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            9999977665        245678899999999864  445788999999999999999864 38899999999999886


Q ss_pred             h
Q 040073          388 R  388 (407)
Q Consensus       388 ~  388 (407)
                      .
T Consensus       476 ~  476 (584)
T 3l6x_A          476 G  476 (584)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=1.6e-26  Score=235.16  Aligned_cols=285  Identities=12%  Similarity=0.122  Sum_probs=243.3

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCC
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVS  171 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~  171 (407)
                      +.+.|+.|+..|.+++ +.+..|+++|.+++.+++++|..+.+.|+++.|+.+|...+..   ...+..++++|.+++.+
T Consensus       160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~  239 (529)
T 3tpo_A          160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  239 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence            4567899999998888 8999999999999999999999999999999999999876532   22477899999999987


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ......+....+  ++|.|+.+|.+++.+++..|+++|.+++...+.+.......|+++.|+.+|.+.   +..++..|+
T Consensus       240 ~~~~~~~~~~~~--~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~v~~~a~  314 (529)
T 3tpo_A          240 KNPAPPLDAVEQ--ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPAL  314 (529)
T ss_dssp             CTTCCCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHH
T ss_pred             ccchhhHHHHhh--HHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC---ChhHHHHHH
Confidence            654444444344  799999999999999999999999999987776666666679999999999998   999999999


Q ss_pred             HHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCch
Q 040073          252 KLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSHA  329 (407)
Q Consensus       252 ~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~  329 (407)
                      ++|.||+... .++..+++.|+++.|+.+|.+. +..++..|+++|.+|+.+... +..+.+ .|++|.|+.++...+..
T Consensus       315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~  392 (529)
T 3tpo_A          315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFK  392 (529)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHH
Confidence            9999999854 5777889999999999999986 789999999999999986544 555555 78999999998888899


Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .++.|+.+|.+++.+.. .+....+++.|++++|+.+|.+. +++++..+...|..+-+.
T Consensus       393 v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          393 TQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999997643 34677889999999999999864 888999998888776543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=1.5e-26  Score=234.21  Aligned_cols=285  Identities=12%  Similarity=0.123  Sum_probs=242.5

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCC
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVS  171 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~  171 (407)
                      +.+.|+.|++.|.+++ +.+..|+++|.+++.+++.+|..+.+.|+++.|+.+|...+..   ...+..++++|.+++.+
T Consensus       141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~  220 (510)
T 3ul1_B          141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  220 (510)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence            4567999999999888 9999999999999999999999999999999999999876531   22477899999999987


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ......+....+  +++.|+.+|.+++.+++..|+++|.+|+...+++.......|+++.|+.+|.+.   +..++..++
T Consensus       221 ~~~~~~~~~~~~--~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~al  295 (510)
T 3ul1_B          221 KNPAPPLDAVEQ--ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPAL  295 (510)
T ss_dssp             CSSCCCHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHH
T ss_pred             ccchhHHHHHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC---ChhhhhHHH
Confidence            654444444344  899999999999999999999999999987776666666679999999999998   999999999


Q ss_pred             HHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcCCch
Q 040073          252 KLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRVSHA  329 (407)
Q Consensus       252 ~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~s~~  329 (407)
                      ++|.||+... .++..+++.|+++.|+.+|.+. +..+++.|+++|.+|+.+.. .+..+.+ .|++|.|+.++...+..
T Consensus       296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~  373 (510)
T 3ul1_B          296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFK  373 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHH
T ss_pred             HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHH
Confidence            9999998854 5777889999999999999886 78999999999999998554 4555555 68999999988888899


Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .++.|+.+|.+++.+.. .+.+..+++.|++++|+.+|.+. +++++..+...|..+-++
T Consensus       374 v~~~Aa~aL~Nl~~~~~-~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          374 TQKEAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHHHHHHHHHHHCC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999998643 34677889999999999999864 788999999888776553

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=2.1e-26  Score=240.54  Aligned_cols=280  Identities=14%  Similarity=0.125  Sum_probs=237.8

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      .+.++.|++.+++++ ..|..|++.|.+++.+ +++|..+++.|++|+|+.+|.+++.  ..+++|+++|.+|+.+.+. 
T Consensus       494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p-  569 (810)
T 3now_A          494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGITINP-  569 (810)
T ss_dssp             TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCH-
T ss_pred             CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCCh-
Confidence            356888999998877 8899999999999965 7899999999999999999998765  4599999999999864322 


Q ss_pred             HhHhh---ccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCCCCHHHHHHH
Q 040073          176 KSIVI---NNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA  250 (407)
Q Consensus       176 ~~~i~---~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A  250 (407)
                      ...+.   ..+  ++++|+.+|.++ +...+..|+++|.||+..++ .+..+.. .|+++.|+.+|.++   ++.+++.|
T Consensus       570 ~~~~~~~~~~~--aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~---~~~Vq~~A  643 (810)
T 3now_A          570 EVSFSGQRSLD--VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED---HLYLTRAA  643 (810)
T ss_dssp             HHHTTTHHHHH--THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC---CTTHHHHH
T ss_pred             hhhhcchhhhc--HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC---CHHHHHHH
Confidence            22221   123  799999999865 44455789999999998764 4445554 68899999999988   89999999


Q ss_pred             HHHHHHhCCCCchHHHHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc
Q 040073          251 LKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH  328 (407)
Q Consensus       251 ~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~  328 (407)
                      +++|.||+.+++.+..+++ .|+++.|+.++.+. +..+++.|+++|.+|+. ++...+.+++..|+++.|+.++...+.
T Consensus       644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~  722 (810)
T 3now_A          644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP  722 (810)
T ss_dssp             HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred             HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH
Confidence            9999999999899988886 79999999999886 78999999999999998 677777888757899999998888889


Q ss_pred             hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 040073          329 AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARA  389 (407)
Q Consensus       329 ~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..++.|+.+|.+++.++  .+....++++|++++|..+++..  .+.+..+.|.+.|+.+-++
T Consensus       723 ~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          723 AVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence            99999999999999853  45789999999999999999754  4789999999999998775

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=2.9e-25  Score=225.67  Aligned_cols=284  Identities=12%  Similarity=0.087  Sum_probs=240.7

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ...++.+++.|.+++ +.+..|+..|+.++.... .++..+++.|++|.|+.+|.+.+. ..++..|+++|.+++.+..+
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHH
Confidence            456899999998887 889999999999976544 678889999999999999998753 24699999999999998666


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      .+..+.+.|  +++.|+.+|.+++.++++.|+++|.+|+...+..+......|++++|+.+|...  .++.++..|+++|
T Consensus       152 ~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L  227 (528)
T 4b8j_A          152 NTKVVIDHG--AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTL  227 (528)
T ss_dssp             HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHH
T ss_pred             HHHHHHhCC--cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence            777777766  799999999999999999999999999977555444445568999999999543  2899999999999


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      .+|+...++.......|+++.|+++|.+. +..++..++++|.+|+...+.+...+...|+++.|+.+|.+.++..++.|
T Consensus       228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a  306 (528)
T 4b8j_A          228 SNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPA  306 (528)
T ss_dssp             HHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHH
Confidence            99999766666666789999999999886 88999999999999998776665444447899999998887788999999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.+|.+++.+.  ......+++.|+++.|+.+|+.+.++.+++.|.++|..|..
T Consensus       307 ~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          307 LRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            99999999854  34677888999999999999954489999999999999875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=2.9e-25  Score=202.84  Aligned_cols=241  Identities=19%  Similarity=0.222  Sum_probs=210.5

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      +.|+.+++.|.+++ +.+..|++.|.+++..+++++..+.+.|+++.|+++|.+.+.  .++..|+++|.+++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHcCChHHH
Confidence            35789999999887 889999999999999888899999999999999999998764  569999999999999866677


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                      ..+.+.|  +++.|+.+|++++.+++..|+++|.+|+...+.........|+++.|+++++++   +++++..|+++|.+
T Consensus        80 ~~~~~~~--~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~~~~a~~~L~~  154 (252)
T 4hxt_A           80 KAIVDAG--GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALAN  154 (252)
T ss_dssp             HHHHHTT--HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            7777776  799999999999999999999999999965544444444468999999999998   99999999999999


Q ss_pred             hCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          257 LCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       257 L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      |+... .++..+++.|+++.|+++|.+. +..++..|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++..++.|
T Consensus       155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a  232 (252)
T 4hxt_A          155 IASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEA  232 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHH
Confidence            99854 4567889999999999999986 78999999999999998 4555666666 7899999998887788999999


Q ss_pred             HHHHHHHhccCCc
Q 040073          335 VRILCSVCKFSAT  347 (407)
Q Consensus       335 ~~~L~~l~~~~~~  347 (407)
                      +.+|.+++....+
T Consensus       233 ~~~L~~l~~~~~~  245 (252)
T 4hxt_A          233 QRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHTCBC
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999986543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=1.3e-25  Score=205.79  Aligned_cols=238  Identities=16%  Similarity=0.194  Sum_probs=207.1

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      ...++.++..|.+++ +.+..|++.|+++...+..++..+.+.|+++.|+++|.+.+.  .++..|+++|.+++.+++++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~   88 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQ   88 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHTTSCHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHH
Confidence            345788899998888 999999999987666568899999999999999999998764  56999999999999876667


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      +..+.+.|  +++.|+.+|++++.+++..|+++|.+|+...+.+.......|+++.|+++|+++   ++.++..|+++|.
T Consensus        89 ~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~  163 (252)
T 4db8_A           89 IQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALS  163 (252)
T ss_dssp             HHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHH
T ss_pred             HHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            77777776  799999999999999999999999999988777734444568999999999988   9999999999999


Q ss_pred             HhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          256 ELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       256 ~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      +|+... +++..+++.|+++.|+++|.+. +..+++.|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++..++.
T Consensus       164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~  241 (252)
T 4db8_A          164 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKE  241 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHT
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHH
Confidence            999854 5777788999999999999987 88999999999999996 4566666666 689999999888778999999


Q ss_pred             HHHHHHHHhc
Q 040073          334 AVRILCSVCK  343 (407)
Q Consensus       334 a~~~L~~l~~  343 (407)
                      |+.+|.+++.
T Consensus       242 A~~~L~~l~~  251 (252)
T 4db8_A          242 AQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTC-
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=1.7e-24  Score=219.86  Aligned_cols=280  Identities=14%  Similarity=0.154  Sum_probs=241.8

Q ss_pred             hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.|++.|.+++  ..+..|++.|.+++.++++++..+++.|+++.|+.+|.+++.  .+++.|+++|.+++.+.+.
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~aL~~l~~~~~~  193 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--DVREQAVWALGNVAGDSPK  193 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHTCHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--HHHHHHHHHHHHHhCCChh
Confidence            467899999998764  788999999999999889999999999999999999998654  5799999999999987766


Q ss_pred             HHhHhhccchhhHHHHHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      .+..+...|  +++.|+.+| .+.+..++..|+++|.+|+...+....... .|+++.|+.+|.++   +++++..|+++
T Consensus       194 ~~~~i~~~g--~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~---~~~v~~~a~~a  267 (528)
T 4b8j_A          194 CRDLVLANG--ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN---DEEVLTDACWA  267 (528)
T ss_dssp             HHHHHHHTT--CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred             hHHHHHHCC--cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC---CHHHHHHHHHH
Confidence            777777766  799999999 567899999999999999987544444444 58899999999988   99999999999


Q ss_pred             HHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcC-Cchh
Q 040073          254 LVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRV-SHAA  330 (407)
Q Consensus       254 L~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~-s~~~  330 (407)
                      |.+|+...+++ ..+++.|+++.|+++|.+. +..++..|+++|.+|+.+. ..+..++. .|+++.|+.+|.+. ++..
T Consensus       268 L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v  345 (528)
T 4b8j_A          268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSI  345 (528)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHH
Confidence            99999876654 5677899999999999987 7899999999999999854 45555555 78999999988887 7899


Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++.|+.+|.+++..  +......+++.|+++.|+.+|+.+ ++.+|+.|+++|..+...
T Consensus       346 ~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          346 KKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            99999999999974  344677888899999999999965 899999999999998774

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=7.1e-25  Score=200.23  Aligned_cols=241  Identities=18%  Similarity=0.225  Sum_probs=209.3

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      |.|+.|+++|.+++.  .++..|+++|.+++..+++++..+.+.|  +++.|+.+|++++.+++..|+++|.+|+...+.
T Consensus         2 ~~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~   77 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDAG--GVEVLVKLLTSTDSEVQKEAARALANIASGPDE   77 (252)
T ss_dssp             CHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            679999999998774  5699999999999987766777777776  799999999999999999999999999987444


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                      .+......|+++.|+.+|+++   +++++..|+++|.+|+. .++++..+++.|+++.|+++|.+. +..++..++++|.
T Consensus        78 ~~~~~~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~  153 (252)
T 4hxt_A           78 AIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALA  153 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            444444568999999999988   99999999999999995 667899999999999999999986 7899999999999


Q ss_pred             HHhcCHhh-HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHH
Q 040073          298 LLCRCAEG-RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTK  376 (407)
Q Consensus       298 ~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k  376 (407)
                      +|+...+. +..+.+ .|+++.|+.++.+.++..++.|+.+|.+++..  +...+..+.+.|+++.|+.++++ +++.+|
T Consensus       154 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~  229 (252)
T 4hxt_A          154 NIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTS-TDSEVQ  229 (252)
T ss_dssp             HHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGC-SCHHHH
T ss_pred             HHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCC-CcHHHH
Confidence            99985544 456666 78999999988877789999999999999974  44568888899999999999985 589999


Q ss_pred             HHHHHHHHHHHhhcc
Q 040073          377 ERAREILKLNARAWR  391 (407)
Q Consensus       377 ~~A~~lL~~l~~~~~  391 (407)
                      +.|.++|..|.....
T Consensus       230 ~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          230 KEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999988643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.93  E-value=5.2e-24  Score=216.57  Aligned_cols=280  Identities=11%  Similarity=0.100  Sum_probs=240.0

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.|++.|.++ + ..+..|++.|.+++..+++++..+++.|+++.|+.+|.+++.  .+++.|+++|.+++.+.+.
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--~vr~~A~~aL~~l~~~~~~  206 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--EVKEQAIWALGNVAGDSTD  206 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--HHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCcc
Confidence            46688999999876 5 889999999999999888899999999999999999997654  5799999999999987666


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      .+..+...|  +++.|+.+|.+.+.+++..|+++|.+|+... +....... .|+++.|+.+|.++   +++++..|+++
T Consensus       207 ~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~---d~~v~~~a~~~  280 (530)
T 1wa5_B          207 YRDYVLQCN--AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM---DTETLVDACWA  280 (530)
T ss_dssp             HHHHHHHTT--CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred             chHHHHHcC--cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC---CHHHHHHHHHH
Confidence            777777666  7999999999999999999999999999775 33333333 58899999999988   89999999999


Q ss_pred             HHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073          254 LVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAAS  331 (407)
Q Consensus       254 L~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~  331 (407)
                      |.+|+... +....+++.|+++.|+++|.+. +..++..|+.+|.+++... .....+.. .|+++.|+.+|.+.+...+
T Consensus       281 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr  358 (530)
T 1wa5_B          281 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIK  358 (530)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHH
Confidence            99999864 4677788899999999999886 7899999999999999754 44555555 6899999998877778899


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          332 DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       332 e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +.|+.+|.+++.+..  +....+++.|+++.|+.+|+. +++.+|+.|.++|..|...
T Consensus       359 ~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          359 KEACWTISNITAGNT--EQIQAVIDANLIPPLVKLLEV-AEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Confidence            999999999997543  356778889999999999985 5899999999999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=1.4e-23  Score=208.04  Aligned_cols=279  Identities=13%  Similarity=0.151  Sum_probs=237.2

Q ss_pred             hhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           98 TQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        98 ~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      +.++.|++.|.++ + ..|..|++.|.+++..+++++..+++.|++|.|+++|.+++.  .+++.|+++|.+++.+.+..
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHH
Confidence            6788999999877 5 889999999999999878888889999999999999998654  56999999999999887667


Q ss_pred             HhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      +..+...|  +++.|+.+|++ .+.+++..|+++|.+|+... +....... .|+++.|+.++.++   +++++..++++
T Consensus       142 ~~~~~~~~--~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~  215 (450)
T 2jdq_A          142 RDYVLDCN--ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWA  215 (450)
T ss_dssp             HHHHHHTT--CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred             HHHHHHCC--CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHH
Confidence            77777665  79999999996 68999999999999999764 22222223 58899999999988   99999999999


Q ss_pred             HHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073          254 LVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       254 L~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      |.+|+... +++..+++.|+++.|+++|.+. +..++..|+.+|.+++...+.....+...|+++.|+.++.+.++..++
T Consensus       216 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~  294 (450)
T 2jdq_A          216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK  294 (450)
T ss_dssp             HHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHH
Confidence            99999864 5677788899999999999876 789999999999999987655444333368999999988777788999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .|+.+|.+++.+.  ......+++.|+++.|+.+|+. +++.+|+.|+++|..|..
T Consensus       295 ~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          295 EACWTISNITAGN--RAQIQTVIDANIFPALISILQT-AEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHc
Confidence            9999999999753  3356778889999999999985 489999999999998865

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=2.7e-24  Score=197.01  Aligned_cols=238  Identities=17%  Similarity=0.184  Sum_probs=201.5

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      ...+.++.+|.+++.  .++..|+++|.++...++..+..+.+.|  +++.|+.+|++++.+++..|+++|.+++...+.
T Consensus        12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSDGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCCchHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            357889999998876  4699999999764443555666666666  799999999999999999999999999975444


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                      .+......|+++.|+.+|+++   ++++++.|+++|.||+..++++ ..+++.|+++.|+++|.++ +..+++.|+++|.
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~  163 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS  163 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            444444468999999999998   9999999999999999998888 8889999999999999886 8899999999999


Q ss_pred             HHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHH
Q 040073          298 LLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTK  376 (407)
Q Consensus       298 ~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k  376 (407)
                      +|+... +.+..+.+ .|+++.|+.++.+.++..++.|+.+|.+++...  .+.+..+++.|+++.|+.++++ +++.+|
T Consensus       164 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~-~~~~v~  239 (252)
T 4db8_A          164 NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSH-ENEKIQ  239 (252)
T ss_dssp             HHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTC-SSSHHH
T ss_pred             HHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCC-CCHHHH
Confidence            999854 45555555 689999999888778899999999999999743  3467888899999999999985 588999


Q ss_pred             HHHHHHHHHHHh
Q 040073          377 ERAREILKLNAR  388 (407)
Q Consensus       377 ~~A~~lL~~l~~  388 (407)
                      +.|.++|..|.+
T Consensus       240 ~~A~~~L~~l~~  251 (252)
T 4db8_A          240 KEAQEALEKLQS  251 (252)
T ss_dssp             HTHHHHHHTTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999987754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=1.1e-23  Score=214.12  Aligned_cols=281  Identities=13%  Similarity=0.120  Sum_probs=237.1

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ...++.+++.|.+++ +.+..|+..|+.+... ...++..+++.|++|.|+.+|.+.++ ..++..|+++|.+++.+..+
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHH
Confidence            345889999998887 8899999999999654 34567788899999999999988633 24699999999999987666


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      .+..+...|  +++.|+.+|++++.++++.|+++|.+|+...+..+......|+++.|+.++.+.   +.+++..|+++|
T Consensus       165 ~~~~~~~~g--~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L  239 (530)
T 1wa5_B          165 QTKVVVDAD--AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTL  239 (530)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHH
T ss_pred             HHHHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC---CHHHHHHHHHHH
Confidence            667776666  799999999999999999999999999977544444444468999999999987   999999999999


Q ss_pred             HHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073          255 VELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       255 ~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      .+|+... ++.......|+++.|+.+|.+. +..++..++++|.+|+... +.+..++. .|+++.|+.+|.+.+...++
T Consensus       240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~  317 (530)
T 1wa5_B          240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQT  317 (530)
T ss_dssp             HHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHH
T ss_pred             HHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHH
Confidence            9999875 5556667789999999999886 7899999999999999864 45666665 68999999988877788999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .|+.+|.+++.+.  ......+++.|+++.|+.+|+.+ ++..++.|.++|..|..
T Consensus       318 ~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          318 PALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            9999999999754  34577788899999999999854 89999999999999875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=3.5e-23  Score=209.67  Aligned_cols=283  Identities=14%  Similarity=0.105  Sum_probs=233.8

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.+++.|.++ + +.+..|+..|++++.+ ++++..+.+.|++|.|+++|.+++.  .++..|+++|.+++.++++
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~  134 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcc
Confidence            46788999998744 5 8899999999999886 6799999999999999999998764  5699999999999987656


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      .+..+.+.|  +++.|+.+|++++.+.+..++.+|.+++...+ ++..+.. .|+++.|+.+|+++  .+...+..++.+
T Consensus       135 ~~~~i~~~g--~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~--~~~~~~~~a~~~  209 (529)
T 1jdh_A          135 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV  209 (529)
T ss_dssp             HHHHHHHHT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             hHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhC--ChHHHHHHHHHH
Confidence            677777666  79999999999999999999999999987544 4444444 58899999999987  356777888999


Q ss_pred             HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073          254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV  295 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~  295 (407)
                      |++|+..++++..+++.|+++.|++++.++                                      .+.++++.++++
T Consensus       210 L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  289 (529)
T 1jdh_A          210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  289 (529)
T ss_dssp             HHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            999999999999999999887777666432                                      256777888888


Q ss_pred             HHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCc-hHHHHHHHHhChHHHHHHHHhcCC
Q 040073          296 LDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSAT-ARVLQEMLQVGVVSKLCLVLQVDA  371 (407)
Q Consensus       296 L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~  371 (407)
                      |.+|+.+ ++++..+.+ .|+++.|++++.+.+  +..++.|+.+|++++...++ +..+..+++.|+++.|+.+|+++.
T Consensus       290 L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~  368 (529)
T 1jdh_A          290 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS  368 (529)
T ss_dssp             HHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred             HHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence            8888875 457777777 689999999887643  68899999999999986544 335678889999999999999765


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 040073          372 SVKTKERAREILKLNAR  388 (407)
Q Consensus       372 ~~~~k~~A~~lL~~l~~  388 (407)
                      ++..++.|.++|..+..
T Consensus       369 ~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          369 HWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHhc
Confidence            57899999999988865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=8.7e-23  Score=202.41  Aligned_cols=282  Identities=11%  Similarity=0.082  Sum_probs=236.1

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-hH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE-SY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~  174 (407)
                      .+.++.+++.+.+++ ..+..|++.|.+++.+++.++..+.+.|+++.|+.+|.+..+ ..++..|+++|.+++.+. +.
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~v~~~a~~~L~~l~~~~~~~  184 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-LTMTRNAVWALSNLCRGKSPP  184 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-HHHHHHHHHHHHHHHCCSSSC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-HHHHHHHHHHHHHHhCCCCCC
Confidence            457888999998877 889999999999999988999999999999999999985333 246999999999999764 22


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      ....+. .+  +++.|+.+|.+++.+++..++++|.+|+...+.........|+++.|+.+|.++   +++++..|+++|
T Consensus       185 ~~~~~~-~~--~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L  258 (450)
T 2jdq_A          185 PEFAKV-SP--CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRAV  258 (450)
T ss_dssp             CCGGGT-GG--GHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS---CHHHHHHHHHHH
T ss_pred             CCHHHH-HH--HHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC---chhHHHHHHHHH
Confidence            222233 33  799999999999999999999999999876544443444468899999999987   999999999999


Q ss_pred             HHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073          255 VELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       255 ~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      .+|+...+ .+..+++.|+++.|+++|.+. +..++..|+++|.+++. +++....+++ .+++|.|+.++.+.++..++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~  336 (450)
T 2jdq_A          259 GNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRK  336 (450)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHH
T ss_pred             HHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHH
Confidence            99998665 455578889999999999986 78999999999999997 5566666666 58999999988888889999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .|+.+|.+++.+. +.+....+++.|+++.|+.+|+. .++++++.|...|..|...
T Consensus       337 ~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          337 EAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence            9999999999753 23356777889999999999985 4899999999999887664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=195.63  Aligned_cols=198  Identities=13%  Similarity=0.118  Sum_probs=168.6

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCc
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADP  218 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~  218 (407)
                      .+|.|+++|.+++....++..|++.|.+|+..++.++..+.+.|  +||.|+.+|++++.++++.|+++|++|+.. +++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G--~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR--GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            48999999998775334578899999999977667788888777  699999999999999999999999999975 455


Q ss_pred             hhhhhchhhhHHHHHHHccc-CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhh---cc-----------
Q 040073          219 FQLISVKQEFFTEIVNVLRD-HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLL---DV-----------  283 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~---~~-----------  283 (407)
                      +..+.. .|+|++||++|++ +   +.++++.|+.+|+||+..+++|..+++. ++|+|++++.   .+           
T Consensus        87 k~~I~~-~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~  161 (233)
T 3tt9_A           87 KLEVAE-LNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG  161 (233)
T ss_dssp             HHHHHH-TTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred             HHHHHH-cCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence            666655 6899999999985 5   8999999999999999999999999985 6999998763   11           


Q ss_pred             -cchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcC------CchhhHHHHHHHHHHhcc
Q 040073          284 -TERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRV------SHAASDRAVRILCSVCKF  344 (407)
Q Consensus       284 -~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~l~~~  344 (407)
                       .+.+++++|.++|.+|+. ++++|+++.+.+|+|+.||.++...      +.+.+|+|+.+|++|+.+
T Consensus       162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence             145889999999999988 5689999998778899999988653      467899999999999974

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=1.3e-22  Score=205.48  Aligned_cols=283  Identities=13%  Similarity=0.137  Sum_probs=232.0

Q ss_pred             CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      ++.+.++.|+..|.+++ ..+..|+..|.+++.+ ..++..+.. .|+++.|+++|.+..+ ..++..|+.+|.+|+.++
T Consensus        14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~-~~~~~~a~~~L~~ls~~~   91 (529)
T 1jdh_A           14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSH
T ss_pred             hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCc
Confidence            34667899999998777 8899999999999986 567777775 5899999999987643 246999999999999887


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      + ++..+.+.|  +++.|+.+|++++.+++..|+++|.+|+...+..+......|+++.|+++|+++   +.+.+..++.
T Consensus        92 ~-~~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~  165 (529)
T 1jdh_A           92 E-GLLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTD  165 (529)
T ss_dssp             H-HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHH
T ss_pred             h-hHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHH
Confidence            6 666666666  799999999999999999999999999988666555555568999999999988   9999999999


Q ss_pred             HHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-------
Q 040073          253 LLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-------  324 (407)
Q Consensus       253 aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-------  324 (407)
                      +|.+|+.. ++++..+++.|+++.|+++|.++.+....+.++.+|.+|+.+++++..+++ .|+++.|+.++.       
T Consensus       166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~  244 (529)
T 1jdh_A          166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHH
Confidence            99999984 678999999999999999998874566777899999999999999988887 466766665443       


Q ss_pred             --------------------------------cCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC-C
Q 040073          325 --------------------------------RVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD-A  371 (407)
Q Consensus       325 --------------------------------~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~  371 (407)
                                                      ..++..++.|+.+|++++.++  .+.+..+.+.|+++.|+.+|... .
T Consensus       245 ~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~  322 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD  322 (529)
T ss_dssp             HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCC
Confidence                                            234566777778888887643  34678888999999999999863 3


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 040073          372 SVKTKERAREILKLNAR  388 (407)
Q Consensus       372 ~~~~k~~A~~lL~~l~~  388 (407)
                      .+.+++.|..+|..|..
T Consensus       323 ~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          323 REDITEPAICALRHLTS  339 (529)
T ss_dssp             CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            47999999999998854

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.1e-22  Score=211.72  Aligned_cols=283  Identities=13%  Similarity=0.135  Sum_probs=233.7

Q ss_pred             CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      +..+.|+.|+..|.+++ ..|..|+..|.+++.+. .++..+.. .|+++.|+++|.+..+ ..++..|+.+|.+|+.+.
T Consensus        11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~-~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A           11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSH
T ss_pred             hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCh
Confidence            45677999999998777 88999999999999874 57777776 4899999999987543 246899999999999887


Q ss_pred             hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      + ++..+.+.|  +++.|+.+|++++..++..|+++|.+|+...+..+......|+++.|+++|+++   +++.+..++.
T Consensus        89 ~-~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~  162 (644)
T 2z6h_A           89 E-GLLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTD  162 (644)
T ss_dssp             H-HHHHHHTTT--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHH
T ss_pred             h-hHHHHHHcC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHH
Confidence            6 666666666  799999999999999999999999999988665555555568999999999998   8899999999


Q ss_pred             HHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc------
Q 040073          253 LLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR------  325 (407)
Q Consensus       253 aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~------  325 (407)
                      +|.+|+. +++++..+++.|+++.|+++|.+......++.++.+|.+|+.++++|..+++ .|+++.|+.++..      
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~  241 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  241 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHH
Confidence            9999997 6779999999999999999998864567788999999999999999999887 5677777664433      


Q ss_pred             ---------------------------------CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCC
Q 040073          326 ---------------------------------VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDAS  372 (407)
Q Consensus       326 ---------------------------------~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~  372 (407)
                                                       .+...++.|+.+|.+|+...  .+.+..+.+.|+++.|+.+|....+
T Consensus       242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~~~  319 (644)
T 2z6h_A          242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD  319 (644)
T ss_dssp             HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHccCC
Confidence                                             34556667777777777642  3457778889999999999986433


Q ss_pred             -HHHHHHHHHHHHHHHh
Q 040073          373 -VKTKERAREILKLNAR  388 (407)
Q Consensus       373 -~~~k~~A~~lL~~l~~  388 (407)
                       +.+++.|..+|..|..
T Consensus       320 ~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          320 REDITEPAICALRHLTS  336 (644)
T ss_dssp             CHHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHhc
Confidence             7999999999998854

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=7.2e-23  Score=213.07  Aligned_cols=283  Identities=15%  Similarity=0.110  Sum_probs=233.7

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.+++.|.++ + +.+..|+..|++++.. ++++..+.+.|+++.|+++|.+.+.  .++..|+++|.+++.+.+.
T Consensus        55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~nL~~~~~~  131 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEG  131 (644)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhCcch
Confidence            46788999999865 5 8889999999999887 6799999999999999999998764  5699999999999977656


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      .+..+.+.|  +++.|+.+|++++...+..++.+|.+|+.. ++++..+.. .|+++.|+++|++.  .....+..++.+
T Consensus       132 ~~~~v~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~--~~~~~~~~a~~~  206 (644)
T 2z6h_A          132 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV  206 (644)
T ss_dssp             HHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred             hHHHHHHCC--ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcC--ChHHHHHHHHHH
Confidence            677776666  799999999999988888999999999964 444555554 58899999999987  356788999999


Q ss_pred             HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073          254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV  295 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~  295 (407)
                      |++|+..++++..+++.|+++.|++++.+.                                      .+.++++.|+++
T Consensus       207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a  286 (644)
T 2z6h_A          207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  286 (644)
T ss_dssp             HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            999999999999999999888887665431                                      256777888888


Q ss_pred             HHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCch-HHHHHHHHhChHHHHHHHHhcCC
Q 040073          296 LDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATA-RVLQEMLQVGVVSKLCLVLQVDA  371 (407)
Q Consensus       296 L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~  371 (407)
                      |.+|+.. ++++..+.+ .|+++.|+.++.+.+  +..++.|+.+|.+++...++. ..+..+++.|+++.|+.+|++..
T Consensus       287 L~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~  365 (644)
T 2z6h_A          287 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS  365 (644)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccC
Confidence            8888875 466777776 689999999887643  688999999999999765443 24555778999999999999765


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 040073          372 SVKTKERAREILKLNAR  388 (407)
Q Consensus       372 ~~~~k~~A~~lL~~l~~  388 (407)
                      ++..++.|.++|..|..
T Consensus       366 ~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          366 HWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHcc
Confidence            67999999999998865

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=2.4e-23  Score=187.53  Aligned_cols=200  Identities=13%  Similarity=0.072  Sum_probs=169.9

Q ss_pred             hhhHHHHHHHhcCCC---hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           97 KTQIVKILNDAKKSP---STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~---~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      ...++.+++.|.+++   +.|..|+..|++++..++.+|..+++.|+||.|+++|++++.  .++++|+++|.+|+.+++
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--DVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCH
Confidence            345889999998765   456789999999999989999999999999999999998654  579999999999998766


Q ss_pred             HHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cC----------
Q 040073          174 YLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DH----------  239 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~----------  239 (407)
                      +++..|.+.|  +||.|+++|.+ ++.+++++|+.+|++|+..++++..+..  +++++|++++.   .+          
T Consensus        85 ~nk~~I~~~G--aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           85 DNKLEVAELN--GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             HHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             HHHHHHHHcC--CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccc
Confidence            7888888887  69999999984 7999999999999999998888887765  46999998763   11          


Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-CchHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcC
Q 040073          240 HQFSQQASKAALKLLVELCPW-GRNRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       240 ~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~  302 (407)
                      +..+++++++|+.+|+||+.. +++|+.|.+. |+|+.|+.+++.+     .+...+|.|+++|.+|+..
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            002569999999999999985 4899999985 7789999999874     1457889999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=3.3e-22  Score=178.03  Aligned_cols=197  Identities=18%  Similarity=0.211  Sum_probs=172.7

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      +..+.++..|.+++ +.+..|++.|.+++..+++++..+.+.|+++.|+++|.+++.  .+++.|+++|.+++.+++..+
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHH
Confidence            44567777788777 889999999999998889999999999999999999998754  569999999999997776677


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                      ..+.+.|  +++.|+.+|++++..++..|+++|.+|+...+.........|+++.|+++|+++   ++++++.|+++|.|
T Consensus        90 ~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~  164 (210)
T 4db6_A           90 QAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSN  164 (210)
T ss_dssp             HHHHHTT--CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            7777776  699999999999999999999999999976655544444578999999999998   99999999999999


Q ss_pred             hCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073          257 LCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       257 L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~  302 (407)
                      |+.. ++++..+++.|+++.|++++.++ +..+++.|+.+|.+|+.+
T Consensus       165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          165 IASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence            9996 66888889999999999999986 889999999999999863

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=1.7e-21  Score=206.68  Aligned_cols=283  Identities=15%  Similarity=0.115  Sum_probs=230.7

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ++.++.|++.|.++ + +.+..|+..|++++.. ++++..+.+.|+|+.|+.+|.+.+.  .++..|+++|.+|+.+.++
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~~~  267 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVD--SVLFHAITTLHNLLLHQEG  267 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCChh
Confidence            36688888888754 5 8899999999999876 7889999999999999999998754  5699999999999987666


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      .+..+.+.|  +++.|+.+|++++..++..++.+|.+++... +.+..+.. .|+++.|+.+|+++  .....+..++.+
T Consensus       268 ~~~~v~~~g--~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~--~~~~~~~~a~~a  342 (780)
T 2z6g_A          268 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV  342 (780)
T ss_dssp             HHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred             hHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcC--CHHHHHHHHHHH
Confidence            777777666  7999999999999999999999999998643 44445554 57899999999987  245667788999


Q ss_pred             HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073          254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV  295 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~  295 (407)
                      |++|+....++..+++.|+++.|+.+|.+.                                      .+..+++.|+++
T Consensus       343 L~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~a  422 (780)
T 2z6g_A          343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  422 (780)
T ss_dssp             HHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            999999888999999888887777655431                                      156678888888


Q ss_pred             HHHHhcCH-hhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCch-HHHHHHHHhChHHHHHHHHhcCC
Q 040073          296 LDLLCRCA-EGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATA-RVLQEMLQVGVVSKLCLVLQVDA  371 (407)
Q Consensus       296 L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~  371 (407)
                      |.+|+... +.+..+.. .|+++.|+++|.+.+  ...++.|+.+|.+|+....+. ..+..+...|+++.|+.+|+...
T Consensus       423 L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~  501 (780)
T 2z6g_A          423 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS  501 (780)
T ss_dssp             HHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred             HHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence            98888864 56666665 689999999887643  389999999999999765442 23557778999999999999765


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 040073          372 SVKTKERAREILKLNAR  388 (407)
Q Consensus       372 ~~~~k~~A~~lL~~l~~  388 (407)
                      .+..++.|+++|..|..
T Consensus       502 ~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          502 HWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             CHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            56999999999998874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.89  E-value=1.3e-23  Score=159.22  Aligned_cols=73  Identities=34%  Similarity=0.531  Sum_probs=68.4

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      .++|++|.||||+++|+|||+++|||||||.||++||.+  +.+||.|++++...   .++||+.|+++|+.|+..+.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~---~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTES---MLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChH---hcchHHHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999999985  68999999999875   89999999999999998876

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=9.1e-22  Score=175.20  Aligned_cols=195  Identities=16%  Similarity=0.171  Sum_probs=170.6

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~  264 (407)
                      ..+.|+.+|++++.+++..|+++|.+++..++.........|+++.|+++|+++   +++++..|+++|.||+. .++++
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHH
Confidence            689999999999999999999999999966555544444468999999999998   99999999999999996 55688


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK  343 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~  343 (407)
                      ..+++.|+++.|+++|.+. +..+++.|+++|.+|+.+ ++.+..+.+ .|+++.|++++.+.+...++.|+.+|++++.
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999987 889999999999999975 445556665 6899999998887788999999999999998


Q ss_pred             cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .+  .+.+..+.+.|+++.|+.+++ ++++.++++|.++|..|.+
T Consensus       168 ~~--~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GG--NEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SC--HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred             CC--cHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence            53  346788889999999999998 4689999999999998864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.88  E-value=1.8e-23  Score=162.94  Aligned_cols=74  Identities=34%  Similarity=0.502  Sum_probs=68.8

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|++|+||||+++|+|||+++|||||||.||++||..  +.+||.|++++..+   +++||+.|++.|+.|+..+.
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~---~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTES---MLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTT---SSEECHHHHHHHHHHHHTTT
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCChh---hceECHHHHHHHHHHHHHhh
Confidence            3468999999999999999999999999999999999974  78999999999874   89999999999999999876

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=1.8e-21  Score=206.51  Aligned_cols=277  Identities=12%  Similarity=0.136  Sum_probs=234.7

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.|++.|.+.+ ..|..|+..|.+++.+ ..++..+.+ .|+++.|+++|.++.+ ..++..|+.+|.+|+.+.+.
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d-~~vr~~Aa~aL~~Ls~~~~~  226 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTND-VETARCTSGTLHNLSHHREG  226 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTSHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCCchh
Confidence            456788888888777 8899999999999986 567777775 4899999999987643 24699999999999988754


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                       +..+.+.|  +++.|+.+|++++..++..|+++|.+|+...+..+......|+++.|+.+|+++   +.+++..++.+|
T Consensus       227 -~~~i~~~g--~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~---~~~v~~~a~~aL  300 (780)
T 2z6g_A          227 -LLAIFKSG--GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCL  300 (780)
T ss_dssp             -HHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHH
T ss_pred             -HHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHH
Confidence             66666666  799999999999999999999999999988766665555568999999999988   899999999999


Q ss_pred             HHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          255 VELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       255 ~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      .+|+. +++++..+++.|+++.|+++|.++......+.++.+|.+|+.+.+++..++. .|+++.|+.++.+.+...++.
T Consensus       301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~  379 (780)
T 2z6g_A          301 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQN  379 (780)
T ss_dssp             HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHH
T ss_pred             HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHH
Confidence            99997 4679999999999999999999874556677899999999999999998888 689999999887777889999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      |+.+|.+++......     ....++++.|+.+|.+ .++.+++.|+++|..|..
T Consensus       380 a~~~L~~L~~~~~~~-----~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~  428 (780)
T 2z6g_A          380 CLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTC  428 (780)
T ss_dssp             HHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhccchhh-----hhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence            999999999765431     1224789999999985 589999999999998865

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.88  E-value=3.9e-23  Score=160.45  Aligned_cols=73  Identities=33%  Similarity=0.526  Sum_probs=68.5

Q ss_pred             CCCCCcccCccccccCcCceecCCc-ccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g-~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      .++|++|+||||+++|+|||+++|| |||||.||++||..  +.+||.|++++..+   +++||+.|++.|+.|+..+.
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~---~L~pn~~Lk~~I~~~~~~~~   90 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMD---QIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTT---TSEECHHHHHHHHHHHHHST
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChh---hceEcHHHHHHHHHHHHHcc
Confidence            4689999999999999999999999 99999999999975  67999999999875   89999999999999999887

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=1.9e-20  Score=175.49  Aligned_cols=182  Identities=16%  Similarity=0.125  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHH-HhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLAT-IITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL  190 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L  190 (407)
                      +.+..|+..|..++.. .+|...+.+.|++|.|+. +|.+++.  .+++.|+++|.+++.+++..+..+.+.|  +++.|
T Consensus        55 e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~--~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g--~l~~L  129 (296)
T 1xqr_A           55 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLG--ALRKL  129 (296)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHH
T ss_pred             HHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCC--CHHHH
Confidence            5678899999999885 678999999999999999 9997665  5799999999999988877888888776  69999


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHH
Q 040073          191 MRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAV  268 (407)
Q Consensus       191 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v  268 (407)
                      +.+|+++ +..++.+|+++|.+|+.........+...|+++.|+.+|+++   +..++..|+++|.+|+.. ++.+..++
T Consensus       130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999964 889999999999999876554443344468899999999998   999999999999999884 66888999


Q ss_pred             hcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073          269 EGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       269 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~  302 (407)
                      +.|++++|+.+|.+. +..+++.++.+|.+|+..
T Consensus       207 ~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          207 SMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence            999999999999987 889999999999999986

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.85  E-value=5e-22  Score=169.71  Aligned_cols=75  Identities=35%  Similarity=0.562  Sum_probs=69.3

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||.|++++...   +++||+.|+++|+.|+..++
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~-~~tcP~t~~~l~~~---~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFDPVTRSPLTQD---QLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHCT
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC-CCCCCCCcCCCChh---hCcchHHHHHHHHHHHHHCC
Confidence            45799999999999999999999999999999999999874 34799999999874   89999999999999999887

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.4e-20  Score=190.56  Aligned_cols=286  Identities=12%  Similarity=0.114  Sum_probs=219.8

Q ss_pred             ChhhHHHHHHHhcC-CC-hHHHHHHHHHHHHhhhCh-------------------------------------h-HHHHH
Q 040073           96 DKTQIVKILNDAKK-SP-STGRKCLRRLRSITLQSE-------------------------------------R-NRSCL  135 (407)
Q Consensus        96 ~~~~i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~-------------------------------------~-~r~~i  135 (407)
                      +++-+..|+..++. .+ ...+.++..|.+++...+                                     + ++..+
T Consensus       374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l  453 (778)
T 3opb_A          374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI  453 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence            34446677777763 33 666667777777654211                                     1 67888


Q ss_pred             HhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChh---HHHHHHHHHHHh
Q 040073          136 EAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQ---SRSYAIMLLKSI  212 (407)
Q Consensus       136 ~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~---~~~~a~~~L~~L  212 (407)
                      .++|+||.|+.++.+.+.  .+++.|+++|.+|+.+.+ ++..+.+.|  +++.|+.+|.+++..   .+.+|+.+|.+|
T Consensus       454 ~eaGvIp~Lv~Ll~S~s~--~~re~A~~aL~nLS~d~~-~R~~lvqqG--al~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          454 LRTELISFLKREMHNLSP--NCKQQVVRIIYNITRSKN-FIPQLAQQG--AVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             TTTTHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTSGG-GHHHHHHTT--HHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHCC--CHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            899999999999998765  469999999999997754 677777666  699999999987544   899999999999


Q ss_pred             hccCCchhhhhc--hhhhHHHHHHHcccCCCC-----------CHHHHHHHHHHHHHhCCCCch-----HHHHHhc-Cch
Q 040073          213 FEVADPFQLISV--KQEFFTEIVNVLRDHHQF-----------SQQASKAALKLLVELCPWGRN-----RIKAVEG-GGV  273 (407)
Q Consensus       213 s~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~-----------~~~~~~~A~~aL~~L~~~~~n-----~~~~v~~-G~v  273 (407)
                      +...+....+..  ..|+|++|+++|..+...           +.--+..|+.||.||+..++|     +..++++ |++
T Consensus       529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~  608 (778)
T 3opb_A          529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW  608 (778)
T ss_dssp             HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred             HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence            866655443321  138899999999831000           112377899999999998743     7888995 999


Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH-HHHHhcc-----CchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073          274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR-AELLKHG-----AGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r-~~i~~~~-----g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +.|..+|.++ +..++..|+.++.+|+.+++++ .++....     ++++.||.++...+...++.|.++|++++..  +
T Consensus       609 ~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~--~  685 (778)
T 3opb_A          609 STIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT--I  685 (778)
T ss_dssp             HHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--C
Confidence            9999999986 7899999999999999998875 3453321     2478899977766789999999999999753  3


Q ss_pred             hHHHHHHHHh-ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 040073          348 ARVLQEMLQV-GVVSKLCLVLQVD-ASVKTKERAREILKLNARA  389 (407)
Q Consensus       348 ~~~~~~~~~~-g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..++..+++. ++++.|+.+++.. .++..+.++..++..+..+
T Consensus       686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            3467788876 8999999999962 5899999999999999874

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.2e-20  Score=187.40  Aligned_cols=279  Identities=12%  Similarity=0.111  Sum_probs=215.8

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH--
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY--  174 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~--  174 (407)
                      -...+.+.|..++ +.+..|++.|..++.+ ++.|+.+++ .|+++.|+.+++....+ .+...++.+|.||+.+.+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccc
Confidence            3445555666655 6689999999999886 788999987 56799999999963332 3589999999999863321  


Q ss_pred             ------------------------------------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          175 ------------------------------------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       175 ------------------------------------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                                                          +++.+.+.|  +++.|+.++++++..+++.|+++|.+|+...++
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG--vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~  490 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE--LISFLKREMHNLSPNCKQQVVRIIYNITRSKNF  490 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTT--HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc--CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence                                                456667666  899999999999999999999999999988777


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHH---HHHHHHHHHHHhCCCCchHHHHHh---cCchHHHHHHhhcccch------
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQ---ASKAALKLLVELCPWGRNRIKAVE---GGGVSVLVDLLLDVTER------  286 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~A~~aL~~L~~~~~n~~~~v~---~G~v~~Lv~lL~~~~~~------  286 (407)
                      +..+.. +|++++|+.+|.++   +..   .+..|+.||.+|....+....+-.   .|+|++|+++|..+++.      
T Consensus       491 R~~lvq-qGal~~LL~lL~s~---~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~  566 (778)
T 3opb_A          491 IPQLAQ-QGAVKIILEYLANK---QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH  566 (778)
T ss_dssp             HHHHHH-TTHHHHHHHHTTCC------CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred             HHHHHH-CCCHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence            777766 68899999999887   443   899999999999875554443311   38999999999832111      


Q ss_pred             -------hHHHHHHHHHHHHhcCH-----hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH
Q 040073          287 -------RVCELMLNVLDLLCRCA-----EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM  354 (407)
Q Consensus       287 -------~~~~~al~~L~~L~~~~-----~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~  354 (407)
                             --+..|+.+|.||+..+     +.|..++.+.|+++.|+.+|.+.+...++.|+.++++|+.....  +....
T Consensus       567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~--i~~k~  644 (778)
T 3opb_A          567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT--IAAKF  644 (778)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG--TGGGT
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH--HHHHH
Confidence                   12669999999999976     34788887547999999988887889999999999999974321  11122


Q ss_pred             H------HhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          355 L------QVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       355 ~------~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .      ..+.++.|+.++++ .+.++|+.|+++|.++..
T Consensus       645 ~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          645 FNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             SCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             HhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence            2      12358899999986 589999999999999853

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.83  E-value=3.2e-19  Score=167.12  Aligned_cols=220  Identities=15%  Similarity=0.098  Sum_probs=170.7

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHH-HHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR-VLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV  235 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l  235 (407)
                      .+..|+..|.+++.+.+ +...+.+.|  +++.|+. +|++++.++++.|+++|.+++..++..+..+...|++++|+.+
T Consensus        56 ~k~~Al~~L~~lv~~~d-na~~~~~~G--~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           56 EREGALELLADLCENMD-NAADFCQLS--GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHTSHH-HHHHHHHTT--HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh-hHHHHHHcC--CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            37889999999988765 445455566  5999999 9999999999999999999998776655555557899999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhcc
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHG  313 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~  313 (407)
                      |+++  .+..+++.|+++|.||+.+. ++...+++.|++|.|+.+|.++ +..++..|+++|.+|+.+ ++.+..+++ .
T Consensus       133 L~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~  208 (296)
T 1xqr_A          133 LDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-M  208 (296)
T ss_dssp             HHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-T
T ss_pred             HccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-c
Confidence            9864  27899999999999999855 4667888999999999999986 899999999999999874 566777777 6


Q ss_pred             CchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHh-----ChHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 040073          314 AGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV-----GVVSKLCLVLQVDA-SVKTKERAREILKL  385 (407)
Q Consensus       314 g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~-----g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~  385 (407)
                      |+++.|+.+|...+...++.|+.+|.++.....  .........     ..+..-.+-++... .....++|..++..
T Consensus       209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~--~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP--QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH--HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh--hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            899999998877789999999999999998632  223322211     11222234455332 35556666666654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.82  E-value=6.9e-21  Score=142.21  Aligned_cols=75  Identities=48%  Similarity=0.900  Sum_probs=69.5

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +.++|++|.||||+++|.|||+++|||+||+.||.+|+.. ++.+||.|++++...   .+.+|..|+++|+.|...++
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~---~l~~n~~l~~~i~~~~~~~~   76 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHA---GLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSC---CCEECTTTHHHHHHHHHHSC
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChh---hCccCHHHHHHHHHHHHHcC
Confidence            4678999999999999999999999999999999999975 478999999999874   89999999999999999886

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=9.5e-21  Score=146.34  Aligned_cols=74  Identities=26%  Similarity=0.425  Sum_probs=64.6

Q ss_pred             CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcC----CCCCCcccccc---ccccCCCCCCccHHHHHHHHHH
Q 040073            5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTC----KNNTCPVTKQV---LQETDLTSTTPNHTLRRLIQAW   76 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~----~~~~cP~~~~~---~~~~~~~~l~~n~~l~~~I~~~   76 (407)
                      +.+++|.||||+++|+|||+++ |||||||.||++||..+    +..+||+++.+   +...   +++||..|+++|+.|
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~---~L~pn~~L~~~I~~~   79 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS---DLIQDEALRRAIENH   79 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG---GEEECHHHHHHHHHH
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh---hCcCCHHHHHHHHHH
Confidence            4688999999999999999996 99999999999999863    25689995554   7664   899999999999999


Q ss_pred             HHhcc
Q 040073           77 CTINA   81 (407)
Q Consensus        77 ~~~~~   81 (407)
                      ...+.
T Consensus        80 ~~~~~   84 (94)
T 2yu4_A           80 NKKRH   84 (94)
T ss_dssp             HTTCC
T ss_pred             HHHhc
Confidence            98876

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.78  E-value=8.3e-20  Score=170.44  Aligned_cols=75  Identities=33%  Similarity=0.570  Sum_probs=69.1

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||.|+++++..   +++||+.|++.|+.|+..++
T Consensus       202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~---~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQE---QLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGG---GCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchh---cCcccHHHHHHHHHHHHHCC
Confidence            45799999999999999999999999999999999999874 55699999999875   89999999999999999886

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.74  E-value=2.9e-18  Score=132.19  Aligned_cols=77  Identities=25%  Similarity=0.418  Sum_probs=68.2

Q ss_pred             CCCCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ...++++|.||||.++|.|||+++ |||+||+.||.+||...+...||.|++++....  .+.+|..++++|+.|...+.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~--~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD--ALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTT--SCEECHHHHHHHHHHHHHHT
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcc--ccCcCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999 999999999999998655689999999973223  78999999999999998776

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.68  E-value=7.9e-18  Score=118.23  Aligned_cols=55  Identities=22%  Similarity=0.386  Sum_probs=49.2

Q ss_pred             cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHH
Q 040073            9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHT   68 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~   68 (407)
                      .|.||||+++|+|||++ +|||+|||.+|++|+.+  +.+||+|++++..+   +++||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~---~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIE---EIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGG---GCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChh---hcEECcc
Confidence            58999999999999999 89999999999999986  45699999999885   8888853

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.67  E-value=1.1e-14  Score=146.24  Aligned_cols=283  Identities=19%  Similarity=0.235  Sum_probs=210.9

Q ss_pred             hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-Chh
Q 040073           97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNV-SES  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~  173 (407)
                      ...|+.|..++++..  ++|+.|+..|+.++++   ++..+. .++++.|+..|+.+....+....++.+|.++.. +++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            577999999998766  9999999999999875   444444 556899999999876544457778888876433 321


Q ss_pred             H----------------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc--hhhhhchhhhHHHHHHH
Q 040073          174 Y----------------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP--FQLISVKQEFFTEIVNV  235 (407)
Q Consensus       174 ~----------------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~l  235 (407)
                      +                ..+.+.+.. +.++.|+.+|++.+..+|.++..+|..|+.....  ...+....++|+.||.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             ------------CHHHHHHHHHHHST-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            1                122333333 2699999999999999999999999999877654  34455456889999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCH-hhHHHHH
Q 040073          236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCA-EGRAELL  310 (407)
Q Consensus       236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~-~~r~~i~  310 (407)
                      |.+.   ...++..|+..|.+|+.+..+..+++. +|+++.|+.++....   ...+.+.|+.+|.+|.... .++..+.
T Consensus       175 L~d~---rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          175 LADS---REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             GGCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhCc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9988   889999999999999998877767665 699999999998752   2478899999999999854 5787777


Q ss_pred             hccCchHHHHHHHHcCCc------hhhHH---HHHHHHHHhccCC----chHHHHHHHHhChHHHHHHHHhcCC-CHHHH
Q 040073          311 KHGAGLAVVSKKILRVSH------AASDR---AVRILCSVCKFSA----TARVLQEMLQVGVVSKLCLVLQVDA-SVKTK  376 (407)
Q Consensus       311 ~~~g~i~~Lv~~l~~~s~------~~~e~---a~~~L~~l~~~~~----~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k  376 (407)
                      + .++++.|..++....+      ....+   ++.++..++..+.    ....+..+.+.|+++.|+.++.+.+ ...++
T Consensus       252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~  330 (651)
T 3grl_A          252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL  330 (651)
T ss_dssp             H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred             H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence            7 6899999985532211      12233   5666777776433    2345667788999999999998754 56677


Q ss_pred             HHHHHHHHHHHh
Q 040073          377 ERAREILKLNAR  388 (407)
Q Consensus       377 ~~A~~lL~~l~~  388 (407)
                      ..|-..+.-+.+
T Consensus       331 ~~Al~tla~~ir  342 (651)
T 3grl_A          331 TETINTVSEVIR  342 (651)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            766666654433

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6.2e-17  Score=144.46  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcc--ccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPV--TKQVLQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~--~~~~~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      ...+|+||||+++|+|||+. .|||+|||.||.+||..++...||+  |++.+...   ++.||..|+++|+.|..+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~---dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR---DFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG---GEEECHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh---hCCcCHHHHHHHHHHHHH
Confidence            45679999999999999985 9999999999999998655678999  88988775   899999999999999764

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.63  E-value=1.7e-16  Score=164.88  Aligned_cols=75  Identities=29%  Similarity=0.486  Sum_probs=69.4

Q ss_pred             CCCCCCcccCccccccCcCceecCCc-ccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g-~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|++|+|||++++|+|||++++| +||||++|++|+..  +.+||.|+++++..   +++||++||+.|++|+..+.
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~---~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLE---DVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcc---cccccHHHHHHHHHHHHHHH
Confidence            36899999999999999999999998 79999999999975  67999999999885   89999999999999999887


Q ss_pred             C
Q 040073           82 C   82 (407)
Q Consensus        82 ~   82 (407)
                      .
T Consensus       960 ~  960 (968)
T 3m62_A          960 E  960 (968)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.61  E-value=2.6e-16  Score=128.11  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      +++++.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++....  .+.+|..++++++.|...
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSY--AMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC--CCCCCHHHHHHHHHHSTT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCC--CCCCCHHHHHHHHHHccc
Confidence            3567899999999999999999999999999999985 3679999999987622  789999999999988643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.58  E-value=9.1e-16  Score=128.72  Aligned_cols=70  Identities=20%  Similarity=0.345  Sum_probs=62.1

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~   78 (407)
                      ++++|.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++..+.  .+.+|..++++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY--IMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC--CCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC--CCCCCHHHHHHHHHHhh
Confidence            4567999999999999999999999999999999986 3678999999987643  68899999999998863

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.2e-15  Score=119.05  Aligned_cols=71  Identities=15%  Similarity=0.305  Sum_probs=63.5

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +++++.||||.+.|.|||++ +|||+||+.||.+|+..  ...||.|++++...   .+.+|..++++++.|.....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~---~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTEP---DLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCChh---hCCcCHHHHHHHHHHHHHHH
Confidence            34568999999999999998 89999999999999974  67999999998874   78999999999999987765

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.55  E-value=3.7e-15  Score=109.59  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=51.7

Q ss_pred             CCCCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      ...+++++.||||.++|.|||+++ |||+||+.||.+|+...+...||.|++++....  .+.+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~--~~~~n   71 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD--ALSGP   71 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT--TTTCT
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc--ccccC
Confidence            346889999999999999999999 999999999999998644579999999754322  45555

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.50  E-value=9.1e-15  Score=114.10  Aligned_cols=72  Identities=21%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             CCCcccCccccccCcCcee-cCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            6 VPAHFLCPISLQLMRDPVT-VSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~-~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +.+++.||||++.|.+||+ ++|||+||+.||.+|+... ...||.|+.++..+   .+.+|..+.++++.......
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~l~~~~~~~~i~~~~~~l~~   91 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLR---ELVNCRWAEEVTQQLDTLQL   91 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCEECTTHHHHHHHHHHHCC
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHH---HhHhhHHHHHHHHHHHHHHH
Confidence            4567899999999999999 9999999999999999873 47899999999875   88899888888877766544

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.50  E-value=5.2e-16  Score=115.85  Aligned_cols=65  Identities=23%  Similarity=0.368  Sum_probs=55.7

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC-----CCCCCccccccccccCCCCCCccHHHHH
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-----KNNTCPVTKQVLQETDLTSTTPNHTLRR   71 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-----~~~~cP~~~~~~~~~~~~~l~~n~~l~~   71 (407)
                      ..+++++.||||.+.|.+||+++|||+||+.||.+|+...     +...||.|++++...   .+.+|..+++
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~---~l~~n~~l~~   76 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE---HLQANQHLAN   76 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS---GGGTCSSSCC
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh---hCCcCHHHHH
Confidence            3578899999999999999999999999999999999752     267899999998764   7788876644

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1e-14  Score=109.27  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=53.6

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHH
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRR   71 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~   71 (407)
                      +.+..+++.||||.+.|.+||+++|||+||+.||.+|+..  ...||.|++++..    .+.+|..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~----~~~~~~~l~~   71 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTGG----IFNPAKELMA   71 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCCS----CCEECHHHHH
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCccccc----cCCcHHHHHH
Confidence            3456678999999999999999999999999999999975  7789999999863    6778855543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=4.3e-15  Score=112.41  Aligned_cols=65  Identities=22%  Similarity=0.393  Sum_probs=55.8

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC----CCCCCccccccccccCCCCCCccHHHHH
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC----KNNTCPVTKQVLQETDLTSTTPNHTLRR   71 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~----~~~~cP~~~~~~~~~~~~~l~~n~~l~~   71 (407)
                      ..+.+++.||||.+.|.+||+++|||+||+.||.+|+...    +...||.|++++..+   .+.+|..+++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l~~   82 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG---NLKPNLHVAN   82 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT---CCEECSCCCS
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH---hCCcCHHHHH
Confidence            3477889999999999999999999999999999999873    367899999998774   7788876544

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.48  E-value=7.6e-15  Score=118.10  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=61.3

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      +.+++.||||.++|.|||++ +|||+||+.||.+|+.    ..||.|+.++...   .+.+|..++++++.+.....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~---~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQ---DLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCS---SCCCCHHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccc---cccccHHHHHHHHHHHHHHH
Confidence            45679999999999999999 9999999999999985    6799999999764   88999999999998876543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.47  E-value=1.8e-14  Score=114.13  Aligned_cols=71  Identities=20%  Similarity=0.385  Sum_probs=59.6

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcccccccccc-CCCCCCccHHHHHHHHHHHH
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQET-DLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~-~~~~l~~n~~l~~~I~~~~~   78 (407)
                      +++++.||||.++|.|||++ +|||+||+.||.+|+..  ...||.|+..+... ++..+.+|..++++++.|..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            57889999999999999998 99999999999999975  58899999987642 11146789999999887743

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.47  E-value=1.7e-14  Score=116.15  Aligned_cols=72  Identities=22%  Similarity=0.439  Sum_probs=62.8

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN   80 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~   80 (407)
                      .++++|.||||.++|.+||+++|||+||+.||.+|+... ...||.|+.++..+   .+.+|..+++.|..+....
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~l~~~i~~l~v~C   85 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN---QLFPDNFAKREILSLMVKC   85 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG---GCEECHHHHHHHHTSEEEC
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHH---hcccCHHHHHHHccceeEC
Confidence            577889999999999999999999999999999999863 55899999999874   7889999998888764433

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.7e-15  Score=112.20  Aligned_cols=65  Identities=22%  Similarity=0.476  Sum_probs=56.0

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhc----CCCCCCccccccccccCCCCCCccHHHHH
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT----CKNNTCPVTKQVLQETDLTSTTPNHTLRR   71 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~----~~~~~cP~~~~~~~~~~~~~l~~n~~l~~   71 (407)
                      ..+++++.||||.+.|.+|++++|||+||+.||.+|+..    .+...||.|++++..+   .+.+|+.+++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l~~   82 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE---NIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS---SCCCSCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH---hcCccHHHHH
Confidence            357788999999999999999999999999999999976    3468899999998874   7888876544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.9e-14  Score=102.55  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=50.9

Q ss_pred             CCCCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      .++.+++.||||.+.|.|||++ +|||+||+.||.+|+..  ...||.|++++..+   ++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~   68 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQT---QPLSG   68 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSS---CSCCC
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcc---ccccc
Confidence            4577889999999999999998 99999999999999975  67899999998764   55555

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.46  E-value=2.3e-14  Score=122.65  Aligned_cols=71  Identities=21%  Similarity=0.381  Sum_probs=60.8

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      +.+++.||||.+.|.|||++ +|||+||+.||.+|+.. ++..||.|+.++....  .+.+|..++++|..|...
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKR--SLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGG--GEEECHHHHHHHHHHC--
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcc--cCCcCHHHHHHHHHHHcc
Confidence            45678999999999999988 99999999999999986 4788999999985433  788999999999988553

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.45  E-value=1.6e-14  Score=115.93  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc------cCCCCCCccHHHHHHHHHHHH
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE------TDLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~------~~~~~l~~n~~l~~~I~~~~~   78 (407)
                      ...++|.||||.++|.+||+++|||+||+.||.+|+.. +...||.|++.+..      ..  .+..|..+.+.|+.|..
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~--~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRR--NSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHT--TCCBCHHHHHHHHHHSH
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccc--cchhhHHHHHHHHHHCC
Confidence            34567999999999999999999999999999999975 37889999998752      11  56778999999988853

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.45  E-value=3e-14  Score=118.08  Aligned_cols=64  Identities=17%  Similarity=0.366  Sum_probs=52.2

Q ss_pred             CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHH
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWC   77 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~   77 (407)
                      .+++.||||.+.|.|||+++|||+||+.||.+|+..  +..||.|++++...     ..|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIKSK-----TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCCE-----EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCCC-----CCccchhHHHHHHH
Confidence            456899999999999999999999999999999974  67899999987542     24555556665554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.45  E-value=9.9e-12  Score=124.97  Aligned_cols=285  Identities=12%  Similarity=0.097  Sum_probs=209.0

Q ss_pred             hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChh-----------------HHHHH-HhcCcHHHHHHHhhccCCCC
Q 040073           97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQSER-----------------NRSCL-EAAGAIEFLATIITKSDAGS  155 (407)
Q Consensus        97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~-----------------~r~~i-~~~G~i~~Lv~lL~~~~~~~  155 (407)
                      ..+++.|+.-|+.+  + +....+++.|.++...++.                 +.+.+ .+.+.|+.|+.+|+..+-  
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--  136 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--  136 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--
Confidence            56788999988754  3 6677789999876543321                 23344 347889999999987654  


Q ss_pred             chHHHHHHHHHhcCCChhH-HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073          156 DECDEALSILYHLNVSESY-LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN  234 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~-~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~  234 (407)
                      -++..++..|..|+.+... .++.|....+ +++.|+.+|++....+|-.+..+|.+|+..+...++++...|+++.|++
T Consensus       137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~-gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~  215 (651)
T 3grl_A          137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPM-GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD  215 (651)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHSTT-HHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHhCcc-cHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence            3589999999998876654 5666665432 6999999999989999999999999999998888888888899999999


Q ss_pred             HcccCCC-CCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccch-----hHHHH---HHHHHHHHhcC--
Q 040073          235 VLRDHHQ-FSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTER-----RVCEL---MLNVLDLLCRC--  302 (407)
Q Consensus       235 lL~~~~~-~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~-----~~~~~---al~~L~~L~~~--  302 (407)
                      +++.++. ....+.+.++..|.||.... .|+..+.|.|.++.|..+|..+.+.     ....+   ++.++..|...  
T Consensus       216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~  295 (651)
T 3grl_A          216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN  295 (651)
T ss_dssp             HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9987511 02378899999999999965 5999999999999999999754211     12233   66666766653  


Q ss_pred             -----HhhHHHHHhccCchHHHHHHHHcC--CchhhHHHHHHHHHHhccCCchHHHHHHHHhC---------hHHHHHHH
Q 040073          303 -----AEGRAELLKHGAGLAVVSKKILRV--SHAASDRAVRILCSVCKFSATARVLQEMLQVG---------VVSKLCLV  366 (407)
Q Consensus       303 -----~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g---------~i~~Ll~l  366 (407)
                           ..++.++.. .|+++.|+++++..  ....+..|+.++..+.++++  ..+....+..         .+.-|+.+
T Consensus       296 ~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~  372 (651)
T 3grl_A          296 PPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSM  372 (651)
T ss_dssp             CHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHH
Confidence                 245667777 58899999987764  35678899999999998543  3455554432         23334444


Q ss_pred             HhcCCCHHHHHHHHHHHHHHH
Q 040073          367 LQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       367 l~~~~~~~~k~~A~~lL~~l~  387 (407)
                      +.+......|-.|...++.+-
T Consensus       373 ~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          373 VNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHH
Confidence            554557888888877777654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.9e-14  Score=100.35  Aligned_cols=53  Identities=11%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      .+++++.||||.+.|++||+++|||+||+.||.+|+.. +...||.|++++..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVKD   63 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCTT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCChh
Confidence            56788999999999999999999999999999999964 378899999988653

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.43  E-value=2.7e-14  Score=113.95  Aligned_cols=69  Identities=19%  Similarity=0.408  Sum_probs=57.6

Q ss_pred             CCcccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~   78 (407)
                      ++++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|++++...   .+.+|..+.+.++.+..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR---SLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT---TCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh---hcCccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999853 246899999998874   77888776666666543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.39  E-value=1.3e-13  Score=114.32  Aligned_cols=71  Identities=18%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccC------CCCCCccHHHHHHHHHH
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETD------LTSTTPNHTLRRLIQAW   76 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~------~~~l~~n~~l~~~I~~~   76 (407)
                      .++++|.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++..+.      ...+.++..+++.|...
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L  103 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL  103 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence            46788999999999999999999999999999999976 3678999998642100      00455787887777644

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.8e-13  Score=96.14  Aligned_cols=47  Identities=26%  Similarity=0.502  Sum_probs=42.2

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVT   51 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~   51 (407)
                      .+.+++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            477889999999999999999999999999999999852 36789987

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.6e-13  Score=99.40  Aligned_cols=53  Identities=26%  Similarity=0.559  Sum_probs=47.3

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~~   57 (407)
                      .+++++.||||.+.|.+||+++|||+||+.||.+|+.. .+...||.|++++..
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            47788999999999999999999999999999999973 236789999998865

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.36  E-value=2.2e-13  Score=109.40  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=55.8

Q ss_pred             CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCC-ccHHHHHHHHHHH
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT-PNHTLRRLIQAWC   77 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~-~n~~l~~~I~~~~   77 (407)
                      ++++|.||||.++|.|||+++|||+||+.||.+|+... ...||.|+.++...   ++. ++..+.+.+..+.
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~l~~~i~~l~   88 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPT---DLESPVKSFLNILNSLM   88 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCBCCCHHHHHHHHHCE
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHh---hccccHHHHHHHHHHhc
Confidence            44568999999999999999999999999999999863 67899999998764   444 4666666665543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.36  E-value=2.9e-13  Score=116.30  Aligned_cols=69  Identities=23%  Similarity=0.477  Sum_probs=61.1

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHH
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWC   77 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~   77 (407)
                      .++++|.||||.++|.+||+++|||+||+.||.+|+... ...||.|+.++..+   .+.+|..+++.|..+.
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN---QLFPDNFAKREILSLM   82 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG---GCEECHHHHHHHHTSE
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchh---hhhhhHHHHHHHhhcc
Confidence            578899999999999999999999999999999999863 56999999999874   7889988888887653

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=7.9e-13  Score=100.54  Aligned_cols=64  Identities=25%  Similarity=0.405  Sum_probs=51.6

Q ss_pred             CCCCCcccCccccccCcC----ceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccH
Q 040073            4 IEVPAHFLCPISLQLMRD----PVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNH   67 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~   67 (407)
                      ..+.+++.||||.+.|.+    |++++|||+||+.||.+|+... +...||.|++++..+.+..+..|.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~   78 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNL   78 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECT
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHH
Confidence            457788999999999999    9999999999999999999863 247899999987653222444454

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.33  E-value=5.2e-13  Score=95.41  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             CcccCccccc-cCcCc----eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            8 AHFLCPISLQ-LMRDP----VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         8 ~~~~Cpi~~~-~~~dP----v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      +++.||||.+ .|.+|    |+++|||+||+.||.+|+.+ +...||.|++++..+   ++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~---~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKS---NFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSC---CCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccc---cceee
Confidence            5789999999 99999    57899999999999999876 378899999998764   55554

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=90.49  Aligned_cols=47  Identities=23%  Similarity=0.622  Sum_probs=41.9

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVT   51 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~   51 (407)
                      .+.+++.||||.+.|.+||+++|||+||+.||.+|+.. .+...||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46788999999999999999999999999999999864 246889987

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.31  E-value=6.8e-13  Score=96.55  Aligned_cols=58  Identities=19%  Similarity=0.368  Sum_probs=49.8

Q ss_pred             CCCCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            4 IEVPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      ....+++.||||.+.|.+|       ++++|||+||+.||.+|+..  +..||.|++++..+   .+.++
T Consensus         5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~   69 (71)
T 3ng2_A            5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK---RYHPI   69 (71)
T ss_dssp             -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCC---SCCCC
T ss_pred             CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChh---heeec
Confidence            4556789999999999999       89999999999999999986  57999999998764   55554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=95.66  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ...+++.||||++.|.+||+++|||+||+.||.+|+..  ...||.|++.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence            45667999999999999999999999999999999975  5789999998765

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=4.2e-12  Score=91.73  Aligned_cols=51  Identities=20%  Similarity=0.400  Sum_probs=45.9

Q ss_pred             CCCCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073            4 IEVPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      ...++++.||||++.|.+|       ++++|||+||+.||.+|+..  +..||.|++++.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~   67 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN   67 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence            3567889999999999999       89999999999999999976  679999998775

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.22  E-value=9e-10  Score=97.38  Aligned_cols=188  Identities=14%  Similarity=0.061  Sum_probs=149.9

Q ss_pred             cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073          138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      .+.++.|+.+|.+++.  .++..|+..|..+..           ..  +++.|+.+|.+++..+|..|+.+|..+..   
T Consensus        18 ~~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~~--~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD---   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTCSCHHHHHHHHHHHHHHCC---
T ss_pred             HhHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------cc--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence            4578999999986654  568889888876432           22  69999999999999999999999998742   


Q ss_pred             chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                              .+.++.|+.+|+++   ++.++..|+.+|..+..          .++++.|+++|.+. +..++..|+.+|.
T Consensus        80 --------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~  137 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAAAFALG  137 (211)
T ss_dssp             --------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                    35689999999988   99999999999998853          35789999999876 8899999999999


Q ss_pred             HHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHH
Q 040073          298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKE  377 (407)
Q Consensus       298 ~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~  377 (407)
                      .+..           ...++.|+.++.+.++..+..|+.+|..+..             ..+++.|..+++ +.++.+|+
T Consensus       138 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~-d~~~~vr~  192 (211)
T 3ltm_A          138 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAE-TGTGFARK  192 (211)
T ss_dssp             HHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHH-HCCHHHHH
T ss_pred             HcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHh-CCCHHHHH
Confidence            8843           2467888887766678899999999988852             235777888887 45899999


Q ss_pred             HHHHHHHHHHhhc
Q 040073          378 RAREILKLNARAW  390 (407)
Q Consensus       378 ~A~~lL~~l~~~~  390 (407)
                      .|...|..+....
T Consensus       193 ~A~~aL~~~~~~~  205 (211)
T 3ltm_A          193 VAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHhcCCCC
Confidence            9999998876643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.21  E-value=1.2e-09  Score=96.58  Aligned_cols=189  Identities=20%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ++..++.|++.|.+++ ..+..|+..|..+..           .++++.|+.+|.+.+.  .++..|+.+|..+..    
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~----   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA--WVRRAAADALGQIGD----   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCH--HHHHHHHHHHHHHCC----
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCH--HHHHHHHHHHHhhCC----
Confidence            4677899999998877 888899999987743           2468999999997654  568999998877541    


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                             .+  .++.|+..|++++..+|..|+.+|..+..           .+.++.|+.+|+++   ++.++..|+.+|
T Consensus        80 -------~~--~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL  136 (211)
T 3ltm_A           80 -------ER--AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE---DWFVRIAAAFAL  136 (211)
T ss_dssp             -------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHH
T ss_pred             -------HH--HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence                   22  68999999999999999999999998842           24689999999888   999999999999


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      .++..          ..+++.|+++|.+. +..++..++.+|..+..           ...++.|..++.+.++..++.|
T Consensus       137 ~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A  194 (211)
T 3ltm_A          137 GEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVA  194 (211)
T ss_dssp             HHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHH
Confidence            99843          34789999999876 78999999999999843           2356778887777788999999


Q ss_pred             HHHHHHHhccCC
Q 040073          335 VRILCSVCKFSA  346 (407)
Q Consensus       335 ~~~L~~l~~~~~  346 (407)
                      ..+|..+.....
T Consensus       195 ~~aL~~~~~~~~  206 (211)
T 3ltm_A          195 VNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHC------
T ss_pred             HHHHHhcCCCCC
Confidence            999998886543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.20  E-value=1.8e-09  Score=94.66  Aligned_cols=188  Identities=20%  Similarity=0.112  Sum_probs=152.8

Q ss_pred             CCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073           93 PPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS  171 (407)
Q Consensus        93 ~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  171 (407)
                      ++.+....+.+++.|.+++ ..+..|+..|..+..           .+.++.|+.+|.+.+.  .++..|+.+|..+.. 
T Consensus         9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~--~vr~~a~~~L~~~~~-   74 (201)
T 3ltj_A            9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA--WVRRAAADALGQIGD-   74 (201)
T ss_dssp             CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-
T ss_pred             cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCH--HHHHHHHHHHHhhCC-
Confidence            3456788899999999888 889999999987753           2468999999986654  468889888877531 


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                                ..  +++.|+..|.+.+..+|..|+.+|..+..           .++++.|+.+|+++   ++.++..|+
T Consensus        75 ----------~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~  128 (201)
T 3ltj_A           75 ----------ER--AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE---DWFVRIAAA  128 (201)
T ss_dssp             ----------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHH
T ss_pred             ----------HH--HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC---CHHHHHHHH
Confidence                      22  68999999999999999999999998742           24689999999888   999999999


Q ss_pred             HHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073          252 KLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS  331 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~  331 (407)
                      .+|.++..          .++++.|+++|.+. +..++..|+.+|..+..           ...++.|..++.+.++..+
T Consensus       129 ~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr  186 (201)
T 3ltj_A          129 FALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFAR  186 (201)
T ss_dssp             HHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHH
Confidence            99998853          35789999999886 78999999999998832           2356778887777778899


Q ss_pred             HHHHHHHHHHh
Q 040073          332 DRAVRILCSVC  342 (407)
Q Consensus       332 e~a~~~L~~l~  342 (407)
                      +.|..+|..+-
T Consensus       187 ~~A~~aL~~l~  197 (201)
T 3ltj_A          187 KVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHH
Confidence            99998887764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.20  E-value=1.9e-09  Score=99.69  Aligned_cols=224  Identities=12%  Similarity=0.004  Sum_probs=158.7

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS  177 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  177 (407)
                      .++.|++.|.+++ ..|..|+..|..+..           .+.++.|+.+|.+.+.  .++..|+++|..+......   
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~--~vR~~A~~aL~~l~~~~~~---   87 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY--IRRDIGAFILGQIKICKKC---   87 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSH--HHHHHHHHHHHHSCCCTTT---
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCH--HHHHHHHHHHHHhcccccc---
Confidence            4678888888877 888899999988852           2357889999987655  4689999999887643221   


Q ss_pred             HhhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          178 IVINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                       +.  .  .++.|. .++++++..+|..++.+|..+......     ....+++.|+.+++++   ++.++..|+.+|.+
T Consensus        88 -~~--~--l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~---~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           88 -ED--N--VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK---STNVRRATAFAISV  154 (280)
T ss_dssp             -HH--H--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS---CHHHHHHHHHHHHT
T ss_pred             -ch--H--HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCC---CHHHHHHHHHHHHh
Confidence             11  1  355555 345678899999999999998643211     1235788899999888   89999999999988


Q ss_pred             hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHH
Q 040073          257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVR  336 (407)
Q Consensus       257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~  336 (407)
                      +..          .++++.|+++|.+. +..++..|+.+|..+....         ...++.|+..+.+.++..+..|+.
T Consensus       155 ~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~  214 (280)
T 1oyz_A          155 IND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAII  214 (280)
T ss_dssp             C-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             cCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence            753          25789999999876 7788899999998874321         134667777666666778888888


Q ss_pred             HHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      +|..+..             ..+++.|+..++.+   ..|..|...|..+.
T Consensus       215 aL~~~~~-------------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          215 GLSYRKD-------------KRVLSVLCDELKKN---TVYDDIIEAAGELG  249 (280)
T ss_dssp             HHHHTTC-------------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred             HHHHhCC-------------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC
Confidence            8877651             24566777777632   25666666665553

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.20  E-value=3e-12  Score=91.03  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=44.4

Q ss_pred             CcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            8 AHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      +++.||||.+.|.+|       ++++|||+||+.||.+|+..  +..||.|++++...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence            568999999999998       89999999999999999986  67999999988764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.20  E-value=1.7e-11  Score=90.30  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             CCCCCcccCccccccC--cCceecC--CcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            4 IEVPAHFLCPISLQLM--RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~--~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      ..+.+++.||||.+.|  .|+++.+  |||+||+.||.+||.. +...||.|++++...
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred             cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence            4567889999999998  5677776  9999999999999975 478999999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.6e-11  Score=91.02  Aligned_cols=58  Identities=21%  Similarity=0.378  Sum_probs=47.8

Q ss_pred             CCCCCcccCccccccCcCc---eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            4 IEVPAHFLCPISLQLMRDP---VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dP---v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      ....+++.||||++.|.+|   ++++|||+||+.||.+|+..  +..||.|++++...   .+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ---NTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCS---CSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCc---ccCCC
Confidence            3466789999999999987   45699999999999999964  67999999998764   44444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.12  E-value=4.6e-09  Score=92.01  Aligned_cols=185  Identities=15%  Similarity=0.072  Sum_probs=149.5

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      +..+.++++|.+++.  .++..|+.+|..+..           .+  .++.|+..|.+++..+|..|+.+|..+..    
T Consensus        14 ~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~-----------~~--~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD----   74 (201)
T ss_dssp             HHHHHHHHHTTCSCH--HHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             cchHHHHHHhcCCCH--HHHHHHHHHHHhcCC-----------hh--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence            457889999988776  568999998876442           12  69999999999999999999999988732    


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL  298 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  298 (407)
                             .++++.|+.+|.+.   ++.++..|+++|.++..          ..+++.|+++|.+. +..++..|+.+|..
T Consensus        75 -------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~  133 (201)
T 3ltj_A           75 -------ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAAAFALGE  133 (201)
T ss_dssp             -------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence                   24689999999988   99999999999998753          34789999999876 88999999999988


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      +..           ...++.|+.++.+.++..+..|+.+|..+.    +         ..+++.|..+++. .++.+|..
T Consensus       134 ~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~---------~~~~~~L~~~l~d-~~~~vr~~  188 (201)
T 3ltj_A          134 IGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG----G---------ERVRAAMEKLAET-GTGFARKV  188 (201)
T ss_dssp             HTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S---------HHHHHHHHHHHHH-CCHHHHHH
T ss_pred             hCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c---------hhHHHHHHHHHhC-CCHHHHHH
Confidence            853           346788888777767889999999999884    2         1367788888874 58999999


Q ss_pred             HHHHHHHHHh
Q 040073          379 AREILKLNAR  388 (407)
Q Consensus       379 A~~lL~~l~~  388 (407)
                      |...|..+..
T Consensus       189 A~~aL~~l~~  198 (201)
T 3ltj_A          189 AVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHHHh
Confidence            9999887543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.10  E-value=4.4e-11  Score=86.05  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             CCcccCccccccCcCc-eecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDP-VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ..+..||||.+.+.+| ++++|||+||+.||.+|+..  +..||.|++++..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence            3467899999999997 78899999999999999975  6799999988754

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=87.52  Aligned_cols=50  Identities=14%  Similarity=0.374  Sum_probs=45.3

Q ss_pred             CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+.+++.||||++.|.+ ++++|||+||+.||.+|+..  +..||.|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence            46778999999999999 99999999999999999963  7899999998765

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.08  E-value=1.6e-11  Score=84.60  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=40.5

Q ss_pred             CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+++.||||.+.|.+|++++|||+||+.||.+|     ...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence            467899999999999999999999999998872     5689999987653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.07  E-value=9.3e-09  Score=94.94  Aligned_cols=224  Identities=11%  Similarity=0.018  Sum_probs=161.5

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHH-hhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATI-ITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l-L~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      +..++.+++.+.+++ ..+..|+..|..+........      ..++.|.+. +.+.+  ..++..|+++|..+...+..
T Consensus        53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~--~~vr~~a~~aL~~l~~~~~~  124 (280)
T 1oyz_A           53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKS--ACVRATAIESTAQRCKKNPI  124 (280)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHCGG
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCc
Confidence            456788888888777 788889999988753321111      123344322 33333  24689999999887532210


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                          . ...  +++.|+..|++++..+|..|+.+|..+..           .++++.|+.+++++   ++.++..|+++|
T Consensus       125 ----~-~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL  183 (280)
T 1oyz_A          125 ----Y-SPK--IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP---NGDVRNWAAFAI  183 (280)
T ss_dssp             ----G-HHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS---SHHHHHHHHHHH
T ss_pred             ----c-cHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence                1 112  78999999999999999999999998743           13689999999988   999999999999


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      ..+....        ..+++.|+.+|.+. +..++..|+.+|..+.           ....++.|+..+.+  +..+..|
T Consensus       184 ~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d--~~vr~~a  241 (280)
T 1oyz_A          184 NINKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK--NTVYDDI  241 (280)
T ss_dssp             HHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS--SSCCHHH
T ss_pred             HhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcC--ccHHHHH
Confidence            9885321        24678999999886 7899999999998875           23578888887754  3477888


Q ss_pred             HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      +.+|..+..             ..+++.|..+++.+.++.....+...|+
T Consensus       242 ~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          242 IEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            888887752             2578899999986667777777766554

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.05  E-value=7.8e-11  Score=80.87  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             CcccCccccccCcC----ceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073            8 AHFLCPISLQLMRD----PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         8 ~~~~Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      +++.||||++.|.+    |++++|||+|++.||.+|+..  ...||.|++++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence            56889999999977    889999999999999999986  488999998653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=4e-11  Score=98.34  Aligned_cols=51  Identities=20%  Similarity=0.372  Sum_probs=45.6

Q ss_pred             CCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            6 VPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      .++++.||||++.|.+|       |+++|||+||+.||.+|+..  ...||.|++.+...
T Consensus         4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK   61 (133)
T ss_dssp             -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTT
T ss_pred             CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCccc
Confidence            46789999999999999       99999999999999999975  66999999988753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=83.68  Aligned_cols=52  Identities=23%  Similarity=0.536  Sum_probs=44.2

Q ss_pred             CCCCCcccCccccccCc---CceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            4 IEVPAHFLCPISLQLMR---DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~---dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+...+..||||++.|.   ++++++|||+|++.||.+|+..  +.+||.|+..+..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   63 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA   63 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence            44667789999999884   5678999999999999999986  5679999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.6e-10  Score=84.62  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=45.3

Q ss_pred             CCCCCcccCccccccCcCceec---CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTV---STGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .++.++..||||++.|.+|..+   +|||+|++.||.+|+..  +.+||.|++++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence            3567789999999999988765   99999999999999986  5689999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.03  E-value=1e-10  Score=80.26  Aligned_cols=48  Identities=19%  Similarity=0.481  Sum_probs=42.5

Q ss_pred             CCCcccCccccccCcC---ceecC-CcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            6 VPAHFLCPISLQLMRD---PVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~d---Pv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      +.++..||||.+.|.+   +++++ |||.|++.||.+|+..  +.+||.|++++
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence            4567899999999999   88887 9999999999999965  77899998765

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.02  E-value=1.2e-10  Score=88.92  Aligned_cols=50  Identities=20%  Similarity=0.442  Sum_probs=44.1

Q ss_pred             CCCcccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            6 VPAHFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ..++..||||++.|.+   +++++|||.|++.||.+|+..  +.+||.|+.++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence            4567899999999988   889999999999999999974  6799999987754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.97  E-value=9.8e-09  Score=109.81  Aligned_cols=276  Identities=13%  Similarity=0.103  Sum_probs=186.5

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHH----hcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLE----AAGAIEFLATIITKSDAGSDECDEALSILYHLNVS  171 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~----~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  171 (407)
                      ++-++.+++.+.+++ ..+..++..|..++++.+..-..-.    -.+.++.|++++.+.+.  .++..|+.+|..+...
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~--~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP--KIRSHAVACVNQFIIS  204 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH--HHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhc
Confidence            345778888888777 7788899999999876433211000    12346666666665433  5699999999887754


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ..+  .+...-. ..++.+..++.+++.++|..|+.+|..++........-. -.++++.++..+++.   +++++..|+
T Consensus       205 ~~~--~~~~~~~-~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~---~~~vr~~a~  277 (852)
T 4fdd_A          205 RTQ--ALMLHID-SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYMLQRTQDQ---DENVALEAC  277 (852)
T ss_dssp             TCH--HHHTSHH-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHTCS---SHHHHHHHH
T ss_pred             ccH--HHHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHccCC---cHHHHHHHH
Confidence            322  2221112 278889999988999999999999999986543221111 135788888888887   899999999


Q ss_pred             HHHHHhCCCCchHHHHHh--cCchHHHHHHhh----------cc-----------cchhHHHHHHHHHHHHhcCHhhHHH
Q 040073          252 KLLVELCPWGRNRIKAVE--GGGVSVLVDLLL----------DV-----------TERRVCELMLNVLDLLCRCAEGRAE  308 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~----------~~-----------~~~~~~~~al~~L~~L~~~~~~r~~  308 (407)
                      .++..++.....+..+..  ...+|.++..+.          ..           .+-.++..|..+|..++....  ..
T Consensus       278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~  355 (852)
T 4fdd_A          278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE  355 (852)
T ss_dssp             HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            999999875543332211  145667776662          11           012457788888888886432  12


Q ss_pred             HHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          309 LLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       309 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +..  ..++.+...+.+.+...++.|+.+|..++.+..+  .... .-.+.++.|+..++ +.++.+|..|++.|..+.+
T Consensus       356 ~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~~~-~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          356 LLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIP-YLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             GHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HHGG-GHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred             HHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HHHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence            332  2466777766666788999999999999975432  1111 22467888888887 5699999999999988877


Q ss_pred             h
Q 040073          389 A  389 (407)
Q Consensus       389 ~  389 (407)
                      .
T Consensus       430 ~  430 (852)
T 4fdd_A          430 W  430 (852)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2e-10  Score=84.30  Aligned_cols=49  Identities=16%  Similarity=0.422  Sum_probs=43.4

Q ss_pred             CCcccCccccccCcCc---eecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDP---VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dP---v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .++..||||++.|.++   ++++|||.|++.||.+|+..  +.+||.|++++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence            4567999999999998   78899999999999999976  6789999988754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.96  E-value=3.4e-10  Score=90.26  Aligned_cols=53  Identities=13%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             CCCCcccCccccccCcCce------------------ecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPV------------------TVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv------------------~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~   57 (407)
                      ..+.+..||||++.|.+|+                  +++|||.|++.||.+|+..   .++.+||.|+..+..
T Consensus        21 ~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3456679999999999886                  7899999999999999963   236789999988754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.93  E-value=5.1e-09  Score=109.22  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=140.1

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCCC--Cc
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKAALKLLVELCPW--GR  262 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~  262 (407)
                      .+.++++.|++++.+.|..|+.+|.+|+...+.++.+.. .|+|..++ .+|.+.   +.+++..|+++|+||+..  .+
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~---~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN---NIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhhcCch
Confidence            355677889999999999999999999975554554444 56677665 567777   999999999999999974  46


Q ss_pred             hHHHHHhcCchHHHHHHhhccc-------------c-------hhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHH
Q 040073          263 NRIKAVEGGGVSVLVDLLLDVT-------------E-------RRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSK  321 (407)
Q Consensus       263 n~~~~v~~G~v~~Lv~lL~~~~-------------~-------~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~  321 (407)
                      .+..+++.|++++|..+|....             .       ..+.+.++.+|++||.+ .+....+.. .++++.|+.
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~  189 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLF  189 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHH
Confidence            7888999999999999986420             0       13556788999999974 444555655 688999999


Q ss_pred             HHHcCC---chhhHHHHHHHHHHhccCCchHHHHHHHHhCh---HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          322 KILRVS---HAASDRAVRILCSVCKFSATARVLQEMLQVGV---VSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       322 ~l~~~s---~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~---i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                      .+.+.+   ......|+.+|+.++..+  .+....+.+.|.   +..|+.+.. + +...+..++.+|..+.
T Consensus       190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn--~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          190 RLISADIAPQDIYEEAISCLTTLSEDN--LKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhccC--HHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHh
Confidence            886543   567888999999999753  446777776653   333333333 3 3334556666666654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.91  E-value=2.2e-10  Score=83.74  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+++.|+||.+.+.|||+++|||+ ||+.|+.+|      ..||.|++++..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence            356899999999999999999999 999999988      579999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.86  E-value=1.2e-08  Score=106.38  Aligned_cols=198  Identities=14%  Similarity=0.109  Sum_probs=139.9

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHH-HhhccCCCCchHHHHHHHHHhcCCCh-h
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLAT-IITKSDAGSDECDEALSILYHLNVSE-S  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~a~~~L~~L~~~~-~  173 (407)
                      +..|.++++.|++++ ..|..|+.+|.+++. ++.+|..+...|+|..++. +|.+.+.  .++++|+++|.||+.+. .
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~--~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNI--DSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCH--HHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHhhcCc
Confidence            345778999999888 999999999999996 5899999999998887654 5665544  57999999999998643 3


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCC---------------------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGN---------------------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEI  232 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~---------------------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~L  232 (407)
                      +....+...|  +++.|..+|++..                     .+..++++.+|.+|+...+.........|.++.|
T Consensus       110 d~~~~l~~~~--il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l  187 (684)
T 4gmo_A          110 DFCVHLYRLD--VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL  187 (684)
T ss_dssp             HHHHHHHHTT--HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHcC--hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence            3445555555  7999998886411                     1234577888999987665544333345789999


Q ss_pred             HHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHh--hcccchhHHHHHHHHHHHHh
Q 040073          233 VNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLL--LDVTERRVCELMLNVLDLLC  300 (407)
Q Consensus       233 v~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL--~~~~~~~~~~~al~~L~~L~  300 (407)
                      +.+|.+.+....+++..|+.+|+.|+.... ....+.+.|....+..++  ... +...+..++++|.++.
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            998864322357899999999999998544 455555655433222222  222 3455677889998874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.86  E-value=5.1e-08  Score=104.25  Aligned_cols=271  Identities=11%  Similarity=0.077  Sum_probs=178.6

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      ++.++..+.+++ ..+..+++.|..++...+..-.... .+.++.++.++.+.++  .++..|+..+..++.... .++.
T Consensus       217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~--~vr~~a~e~l~~l~~~~~-~~~~  292 (852)
T 4fdd_A          217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDE--NVALEACEFWLTLAEQPI-CKDV  292 (852)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSH--HHHHHHHHHHHHHTTSTT-HHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcH--HHHHHHHHHHHHHhcchh-HHHH
Confidence            444555555555 7888999999999886554311111 2467888888876544  468999999998886542 2333


Q ss_pred             hhccchhhHHHHHHHH-----------hc-----------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073          179 VINNGEEFLESLMRVL-----------KC-----------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL  236 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL  236 (407)
                      +...-...++.++..+           ..           .+..+|..|+.+|..++.....  .+.  ..+++.|..++
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~--~~l~~~l~~~l  368 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL--PHILPLLKELL  368 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH--HHHHHHHHHHh
Confidence            3221002566666666           22           2334688999999999865331  122  25788888888


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh--HHHHHhccC
Q 040073          237 RDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG--RAELLKHGA  314 (407)
Q Consensus       237 ~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~--r~~i~~~~g  314 (407)
                      ++.   +...++.|+.+|.+++........-.-.++++.|+..|.+. +..++..++++|..++..-..  .....  ..
T Consensus       369 ~~~---~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~  442 (852)
T 4fdd_A          369 FHH---EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KP  442 (852)
T ss_dssp             TCS---SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HH
T ss_pred             cCC---CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HH
Confidence            887   89999999999999998554322112246789999999876 789999999999999863211  11111  23


Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .++.+++.+.+.++..++.|+.+|.+++...+.. ....  -.+.++.|+.+++.. ..+....+...+..+..
T Consensus       443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~--l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPY--LAYILDTLVFAFSKY-QHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGG--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhH--HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            5677888776677899999999999999654331 1111  136778888888754 55555556666665554

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=5.2e-10  Score=85.89  Aligned_cols=69  Identities=12%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             CCcccCccccccCcCceec---CCcccccHHHHHHHHhcC---C---CCCCcc--cccc--ccccCCCCCCccHHHHHHH
Q 040073            7 PAHFLCPISLQLMRDPVTV---STGITYDRVNIERWLFTC---K---NNTCPV--TKQV--LQETDLTSTTPNHTLRRLI   73 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~---~---~~~cP~--~~~~--~~~~~~~~l~~n~~l~~~I   73 (407)
                      .+.|.||||.+.+.+|+++   +|||+||+.|+.+||...   |   ...||.  |+..  +..+    .+.+....+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~----~i~~ll~~~~~   78 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN----EIECMVAAEIM   78 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH----HHHHHSCHHHH
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH----HHHHHCCHHHH
Confidence            4678999999999999876   699999999999999741   2   357999  9887  5542    22233235666


Q ss_pred             HHHHHh
Q 040073           74 QAWCTI   79 (407)
Q Consensus        74 ~~~~~~   79 (407)
                      +.|.+.
T Consensus        79 ~ky~~~   84 (94)
T 1wim_A           79 QRYKKL   84 (94)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.83  E-value=4.7e-08  Score=96.24  Aligned_cols=280  Identities=11%  Similarity=0.107  Sum_probs=183.2

Q ss_pred             hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      +.-++.+++.+.++  + ..+..|+..|..++.+. +..-.... ...++.++.+|.+...+..++..|+.++.++...-
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34577788888776  6 77889999999998753 21100001 23678888888876322356899999998765321


Q ss_pred             hHHH--hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073          173 SYLK--SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKA  249 (407)
Q Consensus       173 ~~~~--~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~  249 (407)
                      .+..  ....  . ..++.+...+.+++.++|..++.+|..++......- .... .++++.++..+++.   +++++..
T Consensus       206 ~~~~~~~~~~--~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~---~~~v~~~  278 (462)
T 1ibr_B          206 KANFDKESER--H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVALQ  278 (462)
T ss_dssp             HHHHTSHHHH--H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS---SHHHHHH
T ss_pred             HHhhhhhHHH--H-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC---chHHHHH
Confidence            1111  1111  1 146666777777899999999999999986543211 1111 16788888888877   8999999


Q ss_pred             HHHHHHHhCCCCc------------------hHHHHHh---cCchHHHHHHhhcc------cchhHHHHHHHHHHHHhcC
Q 040073          250 ALKLLVELCPWGR------------------NRIKAVE---GGGVSVLVDLLLDV------TERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       250 A~~aL~~L~~~~~------------------n~~~~v~---~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~L~~~  302 (407)
                      |+.++..++....                  ....+++   ...+|.+++.|.+.      .+..++..|..+|..|+..
T Consensus       279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~  358 (462)
T 1ibr_B          279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  358 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHh
Confidence            9999888875320                  0011111   23567777777542      1236788889999988763


Q ss_pred             HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHH
Q 040073          303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREI  382 (407)
Q Consensus       303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~l  382 (407)
                      -.  ..+..  ..++.+...+.+.+...++.|+.+|..++.+...+..... + ...++.|+..|+ +..+.+|..|++.
T Consensus       359 ~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l-~~~~~~l~~~l~-d~~~~Vr~~a~~~  431 (462)
T 1ibr_B          359 CE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V-IQAMPTLIELMK-DPSVVVRDTAAWT  431 (462)
T ss_dssp             TT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T-TTHHHHHHHGGG-CSCHHHHHHHHHH
T ss_pred             cc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H-HHHHHHHHHHhc-CCCHHHHHHHHHH
Confidence            32  12332  3456666655555678899999999999975431111111 1 468899999998 5589999999999


Q ss_pred             HHHHHhhcc
Q 040073          383 LKLNARAWR  391 (407)
Q Consensus       383 L~~l~~~~~  391 (407)
                      |..+.+...
T Consensus       432 l~~~~~~~~  440 (462)
T 1ibr_B          432 VGRICELLP  440 (462)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHhcc
Confidence            999888643

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.82  E-value=2e-07  Score=94.72  Aligned_cols=255  Identities=13%  Similarity=0.121  Sum_probs=164.9

Q ss_pred             cCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhh
Q 040073          108 KKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEF  186 (407)
Q Consensus       108 ~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~  186 (407)
                      ..++ ..|..|+..|..++...+..   ......+|.|..++.+.+.  .++..|+.+|..++.....  .....   ..
T Consensus       174 ~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~--~~~~~---~~  243 (588)
T 1b3u_A          174 SDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQD--SVRLLAVEACVNIAQLLPQ--EDLEA---LV  243 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCH--HHHTTHHHHHHHHHHHSCH--HHHHH---HT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCH--HHHHH---HH
Confidence            4445 78888999999887653221   1234678888888876654  4688888888776632211  11221   26


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NR  264 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~  264 (407)
                      ++.+..++++.+..+|..++.+|..++......  .. ...+++.++.++++.   +++++..|+.+|..++..-.  .+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cc-hhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhChhhh
Confidence            888889998889999999999999997643221  11 135789999999988   99999999999999876432  22


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      ....-...+|.+..++.+. +..++..++.+|..++..- +......  ..+|.+...+.+.++..+..++.+|..++..
T Consensus       318 ~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~-~~~~~~~--~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~  393 (588)
T 1b3u_A          318 ENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-hHhHHHH--HHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence            2123345778888888775 7788888888888887532 1222222  3567777766655667777777777776654


Q ss_pred             CCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          345 SATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       345 ~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .+...     .....++.|..++. +.+.+.|..+...|..+.+
T Consensus       394 ~~~~~-----~~~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~  431 (588)
T 1b3u_A          394 IGIRQ-----LSQSLLPAIVELAE-DAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             SCHHH-----HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred             cCHHH-----HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHH
Confidence            32211     11234455555544 3355555555555555544

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.81  E-value=1.9e-09  Score=102.54  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ...||||.+.+.+||+++|||+||+.||.+|+.. +...||.|++++..
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence            3799999999999999999999999999999975 37899999998765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.81  E-value=8.5e-10  Score=90.32  Aligned_cols=55  Identities=20%  Similarity=0.380  Sum_probs=48.0

Q ss_pred             CCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073            7 PAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN   66 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n   66 (407)
                      ++++.||||++.|.+|       |+++|||+||..||.+|+..  +.+||.|+.++..+   ++.++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK---RYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGG---GEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChh---cceee
Confidence            5678999999999998       89999999999999999986  67999999998774   55554

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.8e-09  Score=79.06  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+++.||||++.+.+||+++|||+ ||+.|+.+      ...||.|++++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence            456799999999999999999999 99999964      3579999998765

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.74  E-value=4.9e-09  Score=74.14  Aligned_cols=51  Identities=24%  Similarity=0.217  Sum_probs=43.8

Q ss_pred             CCCCcccCccccccCcCceec--CCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            5 EVPAHFLCPISLQLMRDPVTV--STGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         5 ~~p~~~~Cpi~~~~~~dPv~~--~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .-+++..|+||++-++|+|.+  +|||. ||+.|+.+|+..  +..||.|++++..
T Consensus         4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~   57 (64)
T 2vje_A            4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQM   57 (64)
T ss_dssp             -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred             CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence            345667999999999999987  99999 899999999974  6789999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=5.7e-09  Score=77.58  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=40.1

Q ss_pred             CcccCccccccCcC--------------ceec-CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            8 AHFLCPISLQLMRD--------------PVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         8 ~~~~Cpi~~~~~~d--------------Pv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ++-.|+||++.|.+              ++++ +|||.|.+.||.+|+..  +.+||.|++++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcch
Confidence            45679999999988              4555 59999999999999975  6799999987643

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.70  E-value=2.6e-06  Score=86.37  Aligned_cols=266  Identities=14%  Similarity=0.120  Sum_probs=146.8

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ..+..++..+.+++ ..|..|+..|..++..-...+   .....+|.|...+   ++...++..++.+|..+...-.. .
T Consensus        10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~---~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~~~~-~   82 (588)
T 1b3u_A           10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER---TRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTLVGG-P   82 (588)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH---HHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGGGTS-G
T ss_pred             CcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH---HHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhccCc-H
Confidence            44778888888887 778888888887765311111   1123455555443   12224577777777766532111 1


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc--------------------------------
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV--------------------------------  224 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--------------------------------  224 (407)
                      ...   . ..++.|..++.+++..+|..|+.+|.+++....... +..                                
T Consensus        83 ~~~---~-~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~  157 (588)
T 1b3u_A           83 EYV---H-CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV  157 (588)
T ss_dssp             GGG---G-GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred             HHH---H-HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence            111   1 156677676667778888888888888765432110 000                                


Q ss_pred             ----hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073          225 ----KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC  300 (407)
Q Consensus       225 ----~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~  300 (407)
                          ...+++.|..+++++   ++.++..|+.+|..++..-...  ......+|.+..++.+. +..++..|+.+|..++
T Consensus       158 ~~~~~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~  231 (588)
T 1b3u_A          158 SSAVKAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIA  231 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Confidence                012334444444444   5666666666666655432221  22334556666555554 5566666666666665


Q ss_pred             cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHH
Q 040073          301 RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAR  380 (407)
Q Consensus       301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~  380 (407)
                      ..-. ......  ..+|.+..++.+.+...+..|+.+|..++...+.     +......++.++.+++ +.++.+|+.|+
T Consensus       232 ~~~~-~~~~~~--~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~-d~~~~vr~~a~  302 (588)
T 1b3u_A          232 QLLP-QEDLEA--LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-----EITKTDLVPAFQNLMK-DCEAEVRAAAS  302 (588)
T ss_dssp             HHSC-HHHHHH--HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-----HHHHHTHHHHHHHHHT-CSSHHHHHHHH
T ss_pred             HhCC-HHHHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-----ccchhHHHHHHHHHhC-CCcHHHHHHHH
Confidence            4221 112222  2455555544444456666666666666643222     1223456777777776 45778888888


Q ss_pred             HHHHHHHhhc
Q 040073          381 EILKLNARAW  390 (407)
Q Consensus       381 ~lL~~l~~~~  390 (407)
                      ..|..+....
T Consensus       303 ~~l~~~~~~~  312 (588)
T 1b3u_A          303 HKVKEFCENL  312 (588)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHHh
Confidence            8777776653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.67  E-value=6.7e-07  Score=91.64  Aligned_cols=264  Identities=16%  Similarity=0.111  Sum_probs=175.0

Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073          101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV  179 (407)
Q Consensus       101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i  179 (407)
                      ..+.+.+.+++ ..|..|+..|..+.  .++....     .++.+.++|.+.+.  .++..|+.++..+....++   .+
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~--~VRk~A~~al~~i~~~~p~---~~  156 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDP--YVRKTAAVCVAKLHDINAQ---MV  156 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCH--HHHHHHHHHHHHHHHSSCC---CH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCCh--HHHHHHHHHHHHHHhhChh---hc
Confidence            34445566666 66777777777764  2333322     35678888876554  5699999999987754332   23


Q ss_pred             hccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073          180 INNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP  259 (407)
Q Consensus       180 ~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~  259 (407)
                      ...+  .++.|..+|.+.++.++.+|+.+|..++.............+.+..|+..+.+.   ++-.+...+++|..++.
T Consensus       157 ~~~~--~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~---~~~~q~~il~~l~~l~~  231 (591)
T 2vgl_B          157 EDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC---TEWGQIFILDCLSNYNP  231 (591)
T ss_dssp             HHHH--HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHTSCC
T ss_pred             cccc--HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC---CchHHHHHHHHHHHhCC
Confidence            3233  799999999999999999999999999876543312222346688888888877   88888888999988875


Q ss_pred             CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      .++..    ....++.+..+|.+. +..++..|+.++..+..    +++....+..  ...+.|+. +.+.++..+..|+
T Consensus       232 ~~~~~----~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~-L~~~d~~vr~~aL  303 (591)
T 2vgl_B          232 KDDRE----AQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK--KLAPPLVT-LLSGEPEVQYVAL  303 (591)
T ss_dssp             CSHHH----HHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH--HTHHHHHH-HTTSCHHHHHHHH
T ss_pred             CChHH----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH--HHHHHHHH-HhcCCccHHHHHH
Confidence            43311    124577777777775 78899999999999874    3344444433  24567775 4455677788888


Q ss_pred             HHHHHHhccCCc----------------hHHHHHHHH-------h----ChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          336 RILCSVCKFSAT----------------ARVLQEMLQ-------V----GVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       336 ~~L~~l~~~~~~----------------~~~~~~~~~-------~----g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ..|..+....++                ..++.++.+       .    ..++.|..+++ +.+...|+.+...+..++.
T Consensus       304 ~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~-~~d~~~r~~~v~aI~~la~  382 (591)
T 2vgl_B          304 RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT-EVDVDFVRKAVRAIGRCAI  382 (591)
T ss_dssp             HHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence            888877753221                123333332       1    24555666665 4578888888888877776


Q ss_pred             hc
Q 040073          389 AW  390 (407)
Q Consensus       389 ~~  390 (407)
                      .+
T Consensus       383 ~~  384 (591)
T 2vgl_B          383 KV  384 (591)
T ss_dssp             TC
T ss_pred             hC
Confidence            43

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.66  E-value=9.8e-09  Score=72.30  Aligned_cols=48  Identities=21%  Similarity=0.205  Sum_probs=42.5

Q ss_pred             CcccCccccccCcCceec--CCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            8 AHFLCPISLQLMRDPVTV--STGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~--~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .+..|+||++-++|++++  +|||. ||+.|+.+|+..  +..||.|++++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence            456899999999999988  99999 999999999965  5789999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.56  E-value=4e-08  Score=76.66  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             cccCccccccCcCc------------------eecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            9 HFLCPISLQLMRDP------------------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         9 ~~~Cpi~~~~~~dP------------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      +-.|+||++.|.+|                  +.++|||.|.+.||.+|+..  +.+||.|++++
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~   99 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW   99 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence            45799999999987                  45789999999999999975  78999999875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.55  E-value=1.2e-06  Score=89.82  Aligned_cols=261  Identities=13%  Similarity=0.108  Sum_probs=172.4

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ..+..+++.+.+++ ..+.-+.-.+..+++.+++..     .-++..+.+-|.+.+.  .++..|+.+|+++..     .
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~--~ir~~AL~~L~~i~~-----~  116 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP--LIRALAVRTMGCIRV-----D  116 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH--HHHHHHHHHHHTCCS-----G
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH--HHHHHHHHHHHcCCh-----H
Confidence            45677787777776 666666666777766555432     1124455555554443  458888888888752     1


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                      ++. . .  .++.+..+|.+.++.+|..|+.++..+....+.   .....++++.|..+|.+.   ++.++..|+.+|..
T Consensus       117 ~~~-~-~--l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~  186 (591)
T 2vgl_B          117 KIT-E-Y--LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS---NPMVVANAVAALSE  186 (591)
T ss_dssp             GGH-H-H--HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS---CHHHHHHHHHHHHH
T ss_pred             HHH-H-H--HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC---ChhHHHHHHHHHHH
Confidence            222 2 1  577888999999999999999999999875443   223357899999999988   99999999999999


Q ss_pred             hCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          257 LCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       257 L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                      ++...... ..-...+.++.|+..+.+. ++-.+...+.+|..++..++.-   .  ...++.+...+.+.+......|+
T Consensus       187 i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~---~--~~~l~~l~~~l~~~~~~V~~ea~  260 (591)
T 2vgl_B          187 ISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE---A--QSICERVTPRLSHANSAVVLSAV  260 (591)
T ss_dssp             HTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH---H--HHHHHHHTTCSCSSTTHHHHHHH
T ss_pred             HHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH---H--HHHHHHHHHHHcCCChHHHHHHH
Confidence            99855422 1111224577778777765 6666677777777776533211   1  12355565555555678888899


Q ss_pred             HHHHHHhccC-CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          336 RILCSVCKFS-ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       336 ~~L~~l~~~~-~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .++..+.... .+.+....+. ..+.+.|+.++.  .++.+|..|...|..+...
T Consensus       261 ~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          261 KVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             HHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHh
Confidence            9999887421 1111233332 245677776553  4789999999988877764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.54  E-value=1.2e-08  Score=75.26  Aligned_cols=45  Identities=16%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .++..|+||.+.+.|||.++|||. ||+.|+.+|+      .||.|++++..
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence            456789999999999999999999 9999998763      79999998764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.47  E-value=1.6e-05  Score=84.62  Aligned_cols=275  Identities=13%  Similarity=0.136  Sum_probs=178.8

Q ss_pred             hhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhC-hhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073           98 TQIVKILNDAKKS--P-STGRKCLRRLRSITLQS-ERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVS  171 (407)
Q Consensus        98 ~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~-~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  171 (407)
                      .-++.+++.+.++  + ..+..++..|..++... ++   .+..  ...++.+.+.+.+.+.+..++..|+.+|..+...
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567777777776  6 77888999999998753 21   1211  3456777777776532234688899999876532


Q ss_pred             hhHH--HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073          172 ESYL--KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       172 ~~~~--~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      -...  ..... ..  .++.+...+.+.+.+++..++.+|..+........ .... ..+++.++..+.+.   +++++.
T Consensus       205 ~~~~~~~~~~~-~~--il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~---~~~v~~  277 (876)
T 1qgr_A          205 TKANFDKESER-HF--IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVAL  277 (876)
T ss_dssp             CHHHHTSHHHH-HH--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCS---SHHHHH
T ss_pred             HHHHHHhHHHH-HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhcCC---chHHHH
Confidence            1111  11111 11  57777777877889999999999999886543221 1111 25778888877776   889999


Q ss_pred             HHHHHHHHhCCCCc---------------------hH-HHHHhcCchHHHHHHhhcc------cchhHHHHHHHHHHHHh
Q 040073          249 AALKLLVELCPWGR---------------------NR-IKAVEGGGVSVLVDLLLDV------TERRVCELMLNVLDLLC  300 (407)
Q Consensus       249 ~A~~aL~~L~~~~~---------------------n~-~~~v~~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~L~  300 (407)
                      .|+.++.+++....                     +. ...+ ...+|.+++.|...      .+..++..|..+|..++
T Consensus       278 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~  356 (876)
T 1qgr_A          278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  356 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHH
Confidence            99999888875310                     00 0111 23577788887532      13467788888888887


Q ss_pred             cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHH
Q 040073          301 RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAR  380 (407)
Q Consensus       301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~  380 (407)
                      ..-.  ..++.  ..++.+...+.+.+...++.|+.+|..++.....+... .. -...++.|+..|. +..+.+|..|.
T Consensus       357 ~~~~--~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~-~~-~~~~l~~l~~~l~-d~~~~vr~~a~  429 (876)
T 1qgr_A          357 TCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PL-VIQAMPTLIELMK-DPSVVVRDTAA  429 (876)
T ss_dssp             HHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HH-HHHHHHHHHHHHT-CSSHHHHHHHH
T ss_pred             HHCc--HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH-HH-HHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            6332  12222  24555555554556788999999999999765422122 21 2357888999887 56899999999


Q ss_pred             HHHHHHHhhc
Q 040073          381 EILKLNARAW  390 (407)
Q Consensus       381 ~lL~~l~~~~  390 (407)
                      +.|..+.+..
T Consensus       430 ~~l~~~~~~~  439 (876)
T 1qgr_A          430 WTVGRICELL  439 (876)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999888764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.40  E-value=2.5e-05  Score=68.45  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=162.1

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCC--hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVS--ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      .+..|..+|...++  .++.+|+.+|..+-..  +. .+..+.+.   .++.++.++++.+..+..+|..+|..|....+
T Consensus        34 ~l~~L~~LL~dkD~--~vk~raL~~LeellK~~~~~-l~~~~~e~---~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           34 ALFLILELAGEDDE--TTRLRAFVALGEILKRADSD-LRMMVLER---HLDVFINALSQENEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHSCHH-HHHHHHHH---HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccch--HHHHHHHHHHHHHHHhcccc-ccHHHHHH---HHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence            47788889976655  5699999999987643  32 23334443   69999999999999999999999999987655


Q ss_pred             chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                      -...-..  .++.+|.+++.++   ++-....|+..|..|......+.      .+..+.+++.+. +..++..++.+|.
T Consensus       108 L~~~~y~--Kl~~aL~dlik~~---~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Sk-d~~vK~agl~~L~  175 (265)
T 3b2a_A          108 MGSKTFL--KAAKTLVSLLESP---DDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSP-DLYTKVAGFCLFL  175 (265)
T ss_dssp             BCHHHHH--HHHHHHHHHTTSC---CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred             CCHHHHH--HHHHHHHHHhcCC---CchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCC-ChhHHHHHHHHHH
Confidence            4433333  3678899999987   99999999999999944443433      467788888665 8999999999999


Q ss_pred             HHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh-cCCCHHHH
Q 040073          298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ-VDASVKTK  376 (407)
Q Consensus       298 ~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~k  376 (407)
                      +++...+...-+-.--.+|+-+   +.+.++...+.|+.+|..+.+..--+++..+.   -.+...+.=|- -.+.|..+
T Consensus       176 eia~~S~D~~i~~~I~~eI~el---L~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~  249 (265)
T 3b2a_A          176 NMLNSSADSGHLTLILDEIPSL---LQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIR  249 (265)
T ss_dssp             HHGGGCSSCCCGGGTTTTHHHH---HTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHH
T ss_pred             HhhcccCCHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHH
Confidence            9998443222111112345655   34557889999999999999876443344442   23444444443 35789999


Q ss_pred             HHHHHHHHHHHhh
Q 040073          377 ERAREILKLNARA  389 (407)
Q Consensus       377 ~~A~~lL~~l~~~  389 (407)
                      .+|..+-..+..+
T Consensus       250 ~ka~~v~~~le~~  262 (265)
T 3b2a_A          250 LKAKKVSDLIDSV  262 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888777654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.39  E-value=1.6e-06  Score=96.24  Aligned_cols=273  Identities=9%  Similarity=0.065  Sum_probs=180.8

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      ...+..++..+.+++ +.|..|...|.+....+...-..-.....++.|++.|.+.+.  .++..|+.+|..++..-.. 
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~--~vR~~A~~~L~~l~~~~~~-   81 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG--EVQNLAVKCLGPLVSKVKE-   81 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTSCH-
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhCCH-
Confidence            456889999999988 889999999988765421100000111346778888875433  4688898899887754322 


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-----hhhhchhhhHHHHHHHccc-CCCCCHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-----QLISVKQEFFTEIVNVLRD-HHQFSQQASKA  249 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-----~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~  249 (407)
                       ..+.    ..++.|...|.+++..+|..|+.+|..++..-...     ........+++.|+..+.+ +   +...+..
T Consensus        82 -~~~~----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~---~~~~~~~  153 (1230)
T 1u6g_C           82 -YQVE----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE---DVSVQLE  153 (1230)
T ss_dssp             -HHHH----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS---CHHHHHH
T ss_pred             -HHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC---chHHHHH
Confidence             2221    26788888888888899999999999987543321     0111123689999999984 6   8899999


Q ss_pred             HHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-
Q 040073          250 ALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-  327 (407)
Q Consensus       250 A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-  327 (407)
                      |+.+|..++.. ...-.... ...++.|+..|.+. +..+++.|+.+|..++......  +.  ...++.++..+.+.. 
T Consensus       154 al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~  227 (1230)
T 1u6g_C          154 ALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDS  227 (1230)
T ss_dssp             HHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCc
Confidence            99999998742 11000001 23456666666664 6789999999999998754322  22  235788888776543 


Q ss_pred             chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      ...+..++.++..++...+.. ....  -...++.++..++ +.++.+|+.|...+..+.+..
T Consensus       228 ~~~r~~a~~~l~~l~~~~~~~-~~~~--l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          228 MSTTRTYIQCIAAISRQAGHR-IGEY--LEKIIPLVVKFCN-VDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             SCSCTTHHHHHHHHHHHSSGG-GTTS--CTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHHHHhHHH-HHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHC
Confidence            356667788888888654431 1111  1367888888887 457889999999988887753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=2.7e-07  Score=68.01  Aligned_cols=52  Identities=12%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             CCCcccCccccccC--cCceecCCc-----ccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            6 VPAHFLCPISLQLM--RDPVTVSTG-----ITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~--~dPv~~~~g-----~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.++..|+||++-+  .+|++++|+     |.|-+.||.+|+...+..+||+|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            34557899999877  579999996     99999999999987545799999998754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=3e-07  Score=65.62  Aligned_cols=46  Identities=17%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             CCCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073            6 VPAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.++..|+||++-++|+|.++|||. ||+.|+.+      ...||.|++++..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence            3456899999999999999999999 99999884      4689999998765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.36  E-value=2.7e-05  Score=80.10  Aligned_cols=254  Identities=9%  Similarity=0.076  Sum_probs=164.5

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      ++.+.+.+.+++ ..|.+|+.++..+...+++..     .++++.+..+|.+.+.  .++..|+.+|..++..+.+....
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~--~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNH--GVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCH--HHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCH--hHHHHHHHHHHHHHHhChHHHHH
Confidence            344455555555 777788888888877666432     2566777777765544  46889999999988776543223


Q ss_pred             hhccchhhHHHHHHHHhc---------------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc---CC
Q 040073          179 VINNGEEFLESLMRVLKC---------------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD---HH  240 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~~  240 (407)
                      +.  .  .++.++.+|.+               .++-.+.....+|..+...+...     ....++.|-.++..   ..
T Consensus       217 ~~--~--~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~  287 (618)
T 1w63_A          217 FR--K--LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSK  287 (618)
T ss_dssp             HH--T--THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSS
T ss_pred             HH--H--HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhcccccc
Confidence            32  2  68888887763               36777888888888887543211     11234455555431   10


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHH
Q 040073          241 QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVS  320 (407)
Q Consensus       241 ~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv  320 (407)
                      +.+..+.-.|++++.++...+    .+.+ .++..|..+|.+. +++++..|+.+|..++...  . .++.  ...+.++
T Consensus       288 ~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~--p-~~~~--~~~~~i~  356 (618)
T 1w63_A          288 NVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTD--H-NAVQ--RHRSTIV  356 (618)
T ss_dssp             THHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHH--H-HHHG--GGHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhC--H-HHHH--HHHHHHH
Confidence            014578888888888875422    2222 4678888888775 7889999999999887632  1 2232  2355666


Q ss_pred             HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          321 KKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       321 ~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      ..+.+.+...+..|+.+|..++... +   ...     .+..|+..+.. .+...|+.+...+..++..+
T Consensus       357 ~~l~d~d~~Ir~~alelL~~l~~~~-n---v~~-----iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          357 DCLKDLDVSIKRRAMELSFALVNGN-N---IRG-----MMKELLYFLDS-CEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHCCSS-S---THH-----HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSS
T ss_pred             HHccCCChhHHHHHHHHHHHHcccc-c---HHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh
Confidence            6566666788899999999998643 2   222     34677777774 47788888888887777644

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.36  E-value=9.8e-06  Score=86.12  Aligned_cols=268  Identities=7%  Similarity=0.026  Sum_probs=168.0

Q ss_pred             HHhcCCC-hHHHHHHHHHHHHhhhCh-h-HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH---HhH
Q 040073          105 NDAKKSP-STGRKCLRRLRSITLQSE-R-NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL---KSI  178 (407)
Q Consensus       105 ~~L~~~~-~~~~~al~~L~~l~~~~~-~-~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~  178 (407)
                      +.+.+.+ ..+..|+..|..++.... . ....+  ..+++.|+..+.+.+.  .++..++++|..++..-...   ...
T Consensus       376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~  451 (861)
T 2bpt_A          376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSL--QVKETTAWCIGRIADSVAESIDPQQH  451 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCH--HHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred             HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence            3344555 788889999999986532 2 22222  2467888888876543  46888888888876432110   112


Q ss_pred             hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc--hhhh-hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP--FQLI-SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      +.    ..++.|+..|++. ..++..|+++|.+++.....  ...+ -....+++.|+.++++.+ .+..++..++.+|.
T Consensus       452 ~~----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d-~~~~vr~~a~~al~  525 (861)
T 2bpt_A          452 LP----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALT  525 (861)
T ss_dssp             HH----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC-CGGGHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC-cchHHHHHHHHHHH
Confidence            21    2688888888765 88999999999998764220  1111 111357888888887540 13678999999999


Q ss_pred             HhCCCCc-hHHHHHhcCchHHHHHHhhcc--------------cchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHH
Q 040073          256 ELCPWGR-NRIKAVEGGGVSVLVDLLLDV--------------TERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVV  319 (407)
Q Consensus       256 ~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~L  319 (407)
                      .+..... .....++ ..+|.+++.|...              ....++..++.+|..++..-.. -.....  ..++.+
T Consensus       526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l  602 (861)
T 2bpt_A          526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMGLF  602 (861)
T ss_dssp             HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHH
T ss_pred             HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHH
Confidence            9887433 2223333 3677777777531              1345667888888888753211 111111  245666


Q ss_pred             HHHHHcCCc-hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          320 SKKILRVSH-AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       320 v~~l~~~s~-~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +..+...+. ..++.++.++..++...+.+ ....+  ...++.|+..+. +.++..+..|..++..+.+.
T Consensus       603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l--~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          603 FRLLEKKDSAFIEDDVFYAISALAASLGKG-FEKYL--ETFSPYLLKALN-QVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GHHHH--HHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HHHHH--HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH
Confidence            666655555 78888888888888643332 22222  237888888886 45778899999888877664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.34  E-value=7.8e-06  Score=73.58  Aligned_cols=188  Identities=11%  Similarity=0.084  Sum_probs=136.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCCc-hHH
Q 040073          188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWGR-NRI  265 (407)
Q Consensus       188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~~-n~~  265 (407)
                      +.+.+.+.+.++..|..|+..|..+........ ......+++.|...+. +.   +..++..|+.+|..|+..-. .-.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~---~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDS---NVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHhhhHH
Confidence            357788888999999999999999976522111 1122467888999995 77   99999999999999986322 111


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccC
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~  345 (407)
                      ..+ .-.+|.|++.+.+. ...+++.+..+|..+......     .  ..++.+...+.+.++..++.++.+|..+....
T Consensus        94 ~~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           94 NYA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            222 23788999999886 788999999999999875421     1  24566777666667899999999999965443


Q ss_pred             C-chHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          346 A-TARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       346 ~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      . +......+  ...++.|+.+|. +..+++|..|...+..+.++..
T Consensus       165 ~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          165 QPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             CGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence            2 21112222  247888998887 6689999999999998887643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.26  E-value=1.2e-05  Score=78.88  Aligned_cols=267  Identities=9%  Similarity=0.038  Sum_probs=168.4

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc--CCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS--DAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      .++..|.+++ .. ..+...|..++.......   .-.+.++.|+..+.+.  +.  .+++.|+.+|..++..-.  ...
T Consensus        94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~--~~~  165 (462)
T 1ibr_B           94 YVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDID--PEQ  165 (462)
T ss_dssp             HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSC--GGG
T ss_pred             HHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCC--chh
Confidence            3556666555 55 667778888876521110   1256889999999876  33  458899999988774210  011


Q ss_pred             hhc-cchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          179 VIN-NGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       179 i~~-~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      +.. .. ..++.+...|++.  +..+|..|+.++.++...-+... ......-+++.|...+.+.   +.+++..++.+|
T Consensus       166 ~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vr~~~~~~l  241 (462)
T 1ibr_B          166 LQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNL  241 (462)
T ss_dssp             TGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHH
T ss_pred             hHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence            111 12 2688888999887  78999999999998754311110 0001112466666777776   899999999999


Q ss_pred             HHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHH------------------HHh--cc
Q 040073          255 VELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAE------------------LLK--HG  313 (407)
Q Consensus       255 ~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~------------------i~~--~~  313 (407)
                      ..++...... ...+..+.++.++..+.+. +..++..++..+..++........                  +..  ..
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (462)
T 1ibr_B          242 VKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ  320 (462)
T ss_dssp             HHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence            9988633221 1112225677777777765 788999999999888764311110                  110  01


Q ss_pred             CchHHHHHHHHcC-------CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073          314 AGLAVVSKKILRV-------SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN  386 (407)
Q Consensus       314 g~i~~Lv~~l~~~-------s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l  386 (407)
                      ..+|.+++.|...       +...+..|..+|..++...++ .+..     ..++.+...++ +.+.+.|+.|...|..+
T Consensus       321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~-----~~~~~l~~~l~-~~~~~~r~aal~~l~~l  393 (462)
T 1ibr_B          321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP-----HVLPFIKEHIK-NPDWRYRDAAVMAFGCI  393 (462)
T ss_dssp             HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH-----HHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH-----HHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence            2456666655332       235678888999988876543 1222     45667777777 45899999999999887


Q ss_pred             Hh
Q 040073          387 AR  388 (407)
Q Consensus       387 ~~  388 (407)
                      .+
T Consensus       394 ~~  395 (462)
T 1ibr_B          394 LE  395 (462)
T ss_dssp             SS
T ss_pred             hc
Confidence            75

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.26  E-value=0.00028  Score=72.45  Aligned_cols=257  Identities=15%  Similarity=0.150  Sum_probs=160.8

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS  177 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  177 (407)
                      .....++.+.+++ +.+.-.--.+..++..+++....     ++..|.+-|.+.++  .++..|+.+|+++.. .    +
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~--~vr~lAL~~L~~i~~-~----~  138 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ--FVQGLALCTLGCMGS-S----E  138 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS--HHHHHHHHHHHHHCC-H----H
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH--hHHHHHHHHHHhcCC-H----H
Confidence            4455666666666 55554445666666655442211     25566666666554  468999999999873 2    2


Q ss_pred             HhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      ++ + .  .++.+...|.+.++.+|..|+.++..+......   ..  .++++.|..+|.+.   ++.++..|+.+|..+
T Consensus       139 ~~-~-~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v--~~~~~~l~~lL~D~---d~~V~~~Al~~L~~i  206 (618)
T 1w63_A          139 MC-R-D--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM--EMFLPATKNLLNEK---NHGVLHTSVVLLTEM  206 (618)
T ss_dssp             HH-H-H--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG--GGGGGGTTTSTTCC---CHHHHHHHHHHHHHH
T ss_pred             HH-H-H--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH--HHHHHHHHHHhCCC---CHhHHHHHHHHHHHH
Confidence            22 2 2  688999999999999999999999999865432   22  25778888899887   999999999999999


Q ss_pred             CCCCchHHHHHhcCchHHHHHHhhcc--------------cchhHHHHHHHHHHHHhcCHhh-HHH--------------
Q 040073          258 CPWGRNRIKAVEGGGVSVLVDLLLDV--------------TERRVCELMLNVLDLLCRCAEG-RAE--------------  308 (407)
Q Consensus       258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~L~~~~~~-r~~--------------  308 (407)
                      +..++...... ...+|.++.+|.+-              .++-.+...+.+|..++..+.. ...              
T Consensus       207 ~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~  285 (618)
T 1w63_A          207 CERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET  285 (618)
T ss_dssp             CCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred             HHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence            87543211112 25678788777641              1344455566666666553211 100              


Q ss_pred             -------HH-h-------c-------cCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073          309 -------LL-K-------H-------GAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV  366 (407)
Q Consensus       309 -------i~-~-------~-------~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l  366 (407)
                             ++ +       -       ..++..|.+++.+.++..+..|+.+|..+....      ..+++ .....++..
T Consensus       286 ~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~------p~~~~-~~~~~i~~~  358 (618)
T 1w63_A          286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD------HNAVQ-RHRSTIVDC  358 (618)
T ss_dssp             SSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH------HHHHG-GGHHHHHHG
T ss_pred             ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC------HHHHH-HHHHHHHHH
Confidence                   00 0       0       013445555554455666777777777766421      12222 345566666


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHh
Q 040073          367 LQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       367 l~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +. +.+...|.+|..+|..+..
T Consensus       359 l~-d~d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          359 LK-DLDVSIKRRAMELSFALVN  379 (618)
T ss_dssp             GG-SSCHHHHHHHHHHHHHHCC
T ss_pred             cc-CCChhHHHHHHHHHHHHcc
Confidence            76 5578889998888876644

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.25  E-value=4.3e-05  Score=81.14  Aligned_cols=266  Identities=9%  Similarity=0.047  Sum_probs=168.0

Q ss_pred             HhcCCC-hHHHHHHHHHHHHhhhChhH-HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH--------
Q 040073          106 DAKKSP-STGRKCLRRLRSITLQSERN-RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL--------  175 (407)
Q Consensus       106 ~L~~~~-~~~~~al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~--------  175 (407)
                      .+.+++ ..+..+++.|..++...+.. ...+. ...++.+...+.+.+.  .++..|+..+..++......        
T Consensus       232 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~  308 (861)
T 2bpt_A          232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPND--KVASMTVEFWSTICEEEIDIAYELAQFP  308 (861)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            334444 77888888888887653321 22222 1456666666665443  46888888887766432110        


Q ss_pred             ------HhHhhc-cchhhHHHHHHHHhc-------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC
Q 040073          176 ------KSIVIN-NGEEFLESLMRVLKC-------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ  241 (407)
Q Consensus       176 ------~~~i~~-~gg~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  241 (407)
                            ..++.. -. ..++.++..|..       .+...+..|..+|..++..-..  .+.  ..+++.+...+.+.  
T Consensus       309 ~~~~~~~~~~~~~~~-~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~--~~l~~~l~~~l~~~--  381 (861)
T 2bpt_A          309 QSPLQSYNFALSSIK-DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL--EPVLEFVEQNITAD--  381 (861)
T ss_dssp             TCSCCCCCHHHHHHH-HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHTTCS--
T ss_pred             CCchhhHHHHHHHHH-HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH--HHHHHHHHHHcCCC--
Confidence                  001111 01 267888888864       2357889999999998764321  111  24677777888877  


Q ss_pred             CCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH---HHHHhccCch
Q 040073          242 FSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR---AELLKHGAGL  316 (407)
Q Consensus       242 ~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r---~~i~~~~g~i  316 (407)
                       +...++.|+.+|..++....  .-...++ ..++.|+..+.+. +..++..++++|..++..-...   .....  ..+
T Consensus       382 -~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~l  456 (861)
T 2bpt_A          382 -NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLP--GVV  456 (861)
T ss_dssp             -SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHH--HHH
T ss_pred             -ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHH--HHH
Confidence             89999999999999997533  1122222 4688888888775 7889999999999888632110   11122  346


Q ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHhccCCc---hHHHHHHHHhChHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 040073          317 AVVSKKILRVSHAASDRAVRILCSVCKFSAT---ARVLQEMLQVGVVSKLCLVLQVD-ASVKTKERAREILKLNARA  389 (407)
Q Consensus       317 ~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~---~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~~  389 (407)
                      +.+++.+.+ .+..+..|+.+|..++....+   ..+....  ...++.|+.++... .++.+|..|...|..+...
T Consensus       457 ~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          457 QACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence            777776644 377888999999988864221   1111111  24577888888743 3478898899888887764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.23  E-value=3.9e-05  Score=81.67  Aligned_cols=276  Identities=11%  Similarity=0.052  Sum_probs=171.8

Q ss_pred             HHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhH-HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-H
Q 040073          101 VKILNDAKKS--P-STGRKCLRRLRSITLQSERN-RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-L  175 (407)
Q Consensus       101 ~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~  175 (407)
                      +.+++.+..+  + ..|..|+++|..++..-..+ .........++.+...+.+.+.  .++..++.+|..+...... .
T Consensus       175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhHHHH
Confidence            3444455544  3 67888999999887532211 0011111246666666654433  4588888888877643221 1


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC------------------chhhhh--chhhhHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD------------------PFQLIS--VKQEFFTEIVNV  235 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~------------------~~~~i~--~~~g~i~~Lv~l  235 (407)
                      ...+. ..  .++.+...+.+.+..++..|..++..++....                  ......  .-...++.++..
T Consensus       253 ~~~~~-~~--l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~  329 (876)
T 1qgr_A          253 ETYMG-PA--LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (876)
T ss_dssp             HHHHT-TT--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HH--HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence            22232 12  78888888888888999999999888875320                  000010  012467778888


Q ss_pred             cccCC----CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh--hHHHH
Q 040073          236 LRDHH----QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE--GRAEL  309 (407)
Q Consensus       236 L~~~~----~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~--~r~~i  309 (407)
                      +...+    ..+...+..|+.+|..++.....  .++. ..++.+.+.+.+. +..+++.++.+|..++....  .....
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~  405 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL  405 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            75210    01457888899999888753221  1122 3556666666664 78899999999999987532  22223


Q ss_pred             HhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          310 LKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       310 ~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..  ..+|.++..+.+.++..+..|+.+|..++............ -...++.|+..|+.  +++.|..|.+.|..+.+.
T Consensus       406 ~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          406 VI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence            32  46888888777767889999999999999764321000000 12567788888874  488999999999888775


Q ss_pred             c
Q 040073          390 W  390 (407)
Q Consensus       390 ~  390 (407)
                      .
T Consensus       481 ~  481 (876)
T 1qgr_A          481 A  481 (876)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.22  E-value=1.5e-07  Score=74.43  Aligned_cols=44  Identities=23%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             ccCccccccCcCce------------------ecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073           10 FLCPISLQLMRDPV------------------TVSTGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv------------------~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      -.|+||++.|.+|.                  .++|||.|.+.||.+|+..  +.+||.|++++
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~  110 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW  110 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence            47999999998852                  2489999999999999975  78999999875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.19  E-value=1.2e-05  Score=72.37  Aligned_cols=180  Identities=13%  Similarity=0.105  Sum_probs=128.8

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHH-HHHHhcCcHHHHHHHhh-ccCCCCchHHHHHHHHHhcCCChhH-HHh
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERNR-SCLEAAGAIEFLATIIT-KSDAGSDECDEALSILYHLNVSESY-LKS  177 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~~-~~~  177 (407)
                      .+.+.+.+.+ ..|..|+..|..+....+... ..+  ...++.|...|. +.+.  .++..|+.+|..|+..-.. ...
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNV--VLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHhhhHHH
Confidence            3566677666 999999999999987632210 001  134677777774 4433  4688999999988843211 112


Q ss_pred             HhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      .+   . ..++.|+..+.+.+..+|+.|..+|..+.....      . ..+++.|...|+++   ++.++..++..|..+
T Consensus        95 ~~---~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~-~~ll~~l~~~l~~~---~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           95 YA---S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------L-EAQQESIVESLSNK---NPSVKSETALFIARA  160 (242)
T ss_dssp             HH---H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------H-HHHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred             HH---H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------H-HHHHHHHHHHHcCC---ChHHHHHHHHHHHHH
Confidence            11   2 278899999999999999999999999976432      1 35788899999988   999999999999995


Q ss_pred             CC-CCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          258 CP-WGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       258 ~~-~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .. ....  -..... ..+|.|+.+|.+. +.+++..|..+|..++.
T Consensus       161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          161 LTRTQPTALNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HTTCCGGGCCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            44 3221  122233 4789999999876 78999999999998876

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.10  E-value=0.00013  Score=67.85  Aligned_cols=158  Identities=13%  Similarity=0.116  Sum_probs=122.9

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      -.+..++..|.+++ ..+..++..|+.+-.++......++..+|+..|+++....+.  ..+..++.++.+|..+...-.
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g--N~q~Y~L~AL~~LM~~v~Gm~  195 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH--NYQSYILRALGQLMLFVDGML  195 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH--HHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh--HHHHHHHHHHHHHHhcccccc
Confidence            35667888888777 889999999999555668888999999999999999987754  459999999999988877666


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchh-h---------hHHHHHHHcccCCCCCHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQ-E---------FFTEIVNVLRDHHQFSQQA  246 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g---------~i~~Lv~lL~~~~~~~~~~  246 (407)
                      .++....  +|..+..++.+....+...|..+|..+....+....+...+ .         .+..|+.+|++.+..+.++
T Consensus       196 gvvs~~~--fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el  273 (339)
T 3dad_A          196 GVVAHSD--TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL  273 (339)
T ss_dssp             HHHHCHH--HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred             chhCCHH--HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence            7776543  89999999998889999999999999988877555443321 1         2558999997221138999


Q ss_pred             HHHHHHHHHHhCC
Q 040073          247 SKAALKLLVELCP  259 (407)
Q Consensus       247 ~~~A~~aL~~L~~  259 (407)
                      +..|+..|-.+..
T Consensus       274 q~~amtLIN~lL~  286 (339)
T 3dad_A          274 LVYTVTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9998876665544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.09  E-value=1.2e-06  Score=71.08  Aligned_cols=120  Identities=12%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073          138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD  217 (407)
Q Consensus       138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  217 (407)
                      ...++.|+.+|.+.+.  .++..|+++|..+.           . .  .++.|+.+|++.+..+|..|+++|.++..   
T Consensus        11 ~~~~~~l~~~L~~~~~--~vR~~A~~~L~~~~-----------~-~--~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENK--WVRRDVSTALSRMG-----------D-E--AFEPLLESLSNEDWRIRGAAAWIIGNFQD---   71 (131)
T ss_dssp             ----------CCSSCC--CSSSSCCSSTTSCS-----------S-T--THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred             cccHHHHHHHhcCCCH--HHHHHHHHHHHHhC-----------c-h--HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence            3457888888887665  34777766665432           1 1  36888999999999999999999988742   


Q ss_pred             chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                              .++++.|+.+|+++   ++.++..|+++|.++..          ..+++.|+++|.+. +..++..|+.+|.
T Consensus        72 --------~~a~~~L~~~L~d~---~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 --------ERAVEPLIKLLEDD---SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLE  129 (131)
T ss_dssp             --------HHHHHHHHHHHHHC---CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             --------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                    24689999999988   99999999999999852          24689999999875 7888888888875


Q ss_pred             H
Q 040073          298 L  298 (407)
Q Consensus       298 ~  298 (407)
                      .
T Consensus       130 ~  130 (131)
T 1te4_A          130 T  130 (131)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.07  E-value=7.9e-05  Score=65.30  Aligned_cols=209  Identities=17%  Similarity=0.157  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHH
Q 040073           67 HTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFL  144 (407)
Q Consensus        67 ~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~L  144 (407)
                      ..++.-+..|.-.....-.+        .++..+.-++..|...+ ..+..++..|..+.++-+ ..+....+ ..++.+
T Consensus        10 ~~lre~L~sWkiK~a~ela~--------~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~i   80 (265)
T 3b2a_A           10 TELRELVLSWQILDAVSLAL--------EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVF   80 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--------HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHH--------hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHH
Confidence            45777788885443310000        12444556666666666 888999999999988843 33444444 358999


Q ss_pred             HHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc
Q 040073          145 ATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV  224 (407)
Q Consensus       145 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~  224 (407)
                      +.++.+.+.  -+.-.|+.+|..|-.+.+-..+-...    .+..|..++.+++.-.++.|+..+..+.-...       
T Consensus        81 I~llk~~dE--kval~A~r~L~~LLe~vpL~~~~y~K----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------  147 (265)
T 3b2a_A           81 INALSQENE--KVTIKALRALGYLVKDVPMGSKTFLK----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------  147 (265)
T ss_dssp             HHTCCSTTH--HHHHHHHHHHHHHHTTCCBCHHHHHH----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------
T ss_pred             HHHHhccch--hHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------
Confidence            999977665  34677888777654433222222221    56788888889999999999999999822111       


Q ss_pred             hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          225 KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       225 ~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      ..+++..|.+++.+.   +.+++.+|+++|.+++....+...+  .+.+.-+-.+|.+. |+.+++.|+.+|..+...+
T Consensus       148 ~~~V~~~l~sLl~Sk---d~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          148 SKLVRTYINELVVSP---DLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc
Confidence            235677888999777   9999999999999999844322211  12344455778786 8999999999999998864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.04  E-value=6.5e-05  Score=83.36  Aligned_cols=231  Identities=10%  Similarity=0.026  Sum_probs=152.4

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH--
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY--  174 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~--  174 (407)
                      .-++.+++.|.+.+ ..|..|+..|..++...+.  ..+  ...++.|+..|.+++.  .++..|..+|..++..-..  
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcc
Confidence            44667777777666 8889999999999875433  111  2246777777765554  4577777777766532111  


Q ss_pred             -----HHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073          175 -----LKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       175 -----~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                           .....   . ..+|.|...+. +++...+..|..+|..++........- .....++.|+..|.+.   ++.+++
T Consensus       122 ~~~~~~~~~~---~-~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~---~~~vR~  193 (1230)
T 1u6g_C          122 SGSALAANVC---K-KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP---RLAVRK  193 (1230)
T ss_dssp             --CCTHHHHH---H-HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS---SHHHHH
T ss_pred             cccchHHHHH---H-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCC---cHHHHH
Confidence                 01111   1 27899999998 578999999999999987532211111 1235788888888887   889999


Q ss_pred             HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHcCC
Q 040073          249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILRVS  327 (407)
Q Consensus       249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~~s  327 (407)
                      .|+.+|..++......  +. ...++.|++.|.+..+..++..++.++..++.... + .+..+ ...+|.+++.+.+.+
T Consensus       194 ~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~~  268 (1230)
T 1u6g_C          194 RTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVDD  268 (1230)
T ss_dssp             HHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCCC
Confidence            9999999998754332  22 24688888888765334566677888887765321 1 12211 246777777666666


Q ss_pred             chhhHHHHHHHHHHhccCCc
Q 040073          328 HAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +..++.++.++..++...++
T Consensus       269 ~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          269 DELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             TTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHChH
Confidence            78899999999888876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.02  E-value=0.00013  Score=66.05  Aligned_cols=195  Identities=12%  Similarity=0.109  Sum_probs=132.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHH-hhccCCchhh-hhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCCCCc--hH
Q 040073          190 LMRVLKCGNYQSRSYAIMLLKS-IFEVADPFQL-ISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCPWGR--NR  264 (407)
Q Consensus       190 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~-i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~~~~--n~  264 (407)
                      +...+++.++..|..|...|.. +......-.. ......++..|...+ ++.   +..++..|+.+|..|+..-.  .-
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~---n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA---NIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHhcccccc
Confidence            4466788999999999999999 8743221110 122245788888999 566   89999999999999986221  11


Q ss_pred             H-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh-ccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073          265 I-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK-HGAGLAVVSKKILRVSHAASDRAVRILCSVC  342 (407)
Q Consensus       265 ~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~  342 (407)
                      . .... -.+|.+++.+.+. ...+++.+..+|..++.+-+- ..... -...++.|+..|.+.++..++.++.+|..+.
T Consensus        98 ~~~y~~-~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           98 SKDYVS-LVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             CHHHHH-HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            1 2222 2688999999876 678888888888888763210 00000 0123455666565557889999999999999


Q ss_pred             ccCCch-HHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073          343 KFSATA-RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       343 ~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      ...+.. .....-+.-..++.|..+|. +..+.+|..|.+.|..+.+...
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC
Confidence            765531 11112221368899999997 6799999999999998877644

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.9e-05  Score=70.35  Aligned_cols=190  Identities=12%  Similarity=0.137  Sum_probs=129.4

Q ss_pred             HHHHhcCCC-hHHHHHHHHHHH-HhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH-hH
Q 040073          103 ILNDAKKSP-STGRKCLRRLRS-ITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK-SI  178 (407)
Q Consensus       103 ll~~L~~~~-~~~~~al~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~  178 (407)
                      +-..+.+.+ ..|..|+..|.. +...++.....-.+ ...+..|.+.|..+.. ..++..|+.+|..|+.+   .+ .-
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~---l~~~~   96 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDK---LKTPG   96 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHH---HCTTT
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHh---ccccc
Confidence            344556666 999999999999 87553321100011 1246677777743333 24588899999998832   22 12


Q ss_pred             hh--ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          179 VI--NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       179 i~--~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                      +.  ... ..++.++..++.....++..+..+|..++...+.......-..+++.|+..|+++   ++.++..++.+|..
T Consensus        97 f~~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k---~~~vk~~al~~l~~  172 (249)
T 2qk1_A           97 FSKDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK---TPQIRMECTQLFNA  172 (249)
T ss_dssp             SCHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS---SHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHH
Confidence            22  112 2788999999888899999999999998865432111110135788999999988   99999999999999


Q ss_pred             hCCCCc---hHH-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          257 LCPWGR---NRI-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       257 L~~~~~---n~~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      +.....   ... ..+....+|.|.++|.+. +.++++.|..+|..++.
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            886332   111 223246899999999886 88999999999998875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.95  E-value=1.4e-06  Score=70.69  Aligned_cols=118  Identities=18%  Similarity=0.037  Sum_probs=87.6

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .++.|+.+|++++..+|..|+.+|..+..           . .++.|+.+|++.   ++.++..|+++|.++..      
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~---~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNE---DWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCS---CHHHHHHHHHHHGGGCS------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCC---CHHHHHHHHHHHHhcCC------
Confidence            58889999999999999999888876531           1 268899999988   99999999999998863      


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS  340 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~  340 (407)
                          ..+++.|+.+|.+. +..++..|+.+|..+..           ...++.|++.+.+.++..+..|+.+|..
T Consensus        72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                23589999999876 88999999999998852           2357788887766667788888777653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.79  E-value=0.0014  Score=60.79  Aligned_cols=186  Identities=14%  Similarity=0.111  Sum_probs=134.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHH-hhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKS-IFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      ...+++.|.+++...+..+..-|.. +..+.+....+... +++..|+.+...+   +...+.-+++||.+|-.+.++..
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~---~gN~q~Y~L~AL~~LM~~v~Gm~  195 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA---DHNYQSYILRALGQLMLFVDGML  195 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS---CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc---ChHHHHHHHHHHHHHHhcccccc
Confidence            3456677777888888888888887 55556666666665 5599999999888   99999999999999999888877


Q ss_pred             HHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCc----------hHHHHHHHH---cCCchhh
Q 040073          266 KAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAG----------LAVVSKKIL---RVSHAAS  331 (407)
Q Consensus       266 ~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~----------i~~Lv~~l~---~~s~~~~  331 (407)
                      .+++ ...|..+..++.+. +..+...|+.+|..++...++...++..+-.          ...||..|.   .++...+
T Consensus       196 gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq  274 (339)
T 3dad_A          196 GVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL  274 (339)
T ss_dssp             HHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred             chhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence            7775 45788888888864 7899999999999998865433323322212          568888775   3467889


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHH----HhChHHHHHHHHhcCC-CHHHHH
Q 040073          332 DRAVRILCSVCKFSATARVLQEML----QVGVVSKLCLVLQVDA-SVKTKE  377 (407)
Q Consensus       332 e~a~~~L~~l~~~~~~~~~~~~~~----~~g~i~~Ll~ll~~~~-~~~~k~  377 (407)
                      .+|+..+..+....++++.+..+.    +.|.=..+...|...+ .+..++
T Consensus       275 ~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          275 VYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            999999988888777654344444    3454445555576543 334443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.79  E-value=0.0097  Score=50.23  Aligned_cols=216  Identities=13%  Similarity=0.157  Sum_probs=150.6

Q ss_pred             ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      |..-+..++..|..+- -+|..|+..|-.+++.-++...-+     +..|+-+++.+.. ...-.+...+++.++.-.+ 
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa-IpltqeIa~a~G~la~i~P-  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA-IPLTQEIAKAFGQMAKEKP-  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCH-
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc-CchHHHHHHHHhHHHHhCH-
Confidence            4455667777776554 789999999999998877755443     3556667666554 2223555567777664332 


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                        +++.  +  .+|.+..=..-|++.++.+...+|..++...+.   .  ..+++.-+..++.++   +..-+-.|+..+
T Consensus       103 --e~v~--~--vVp~lfanyrigd~kikIn~~yaLeeIaranP~---l--~~~v~rdi~smltsk---d~~Dkl~aLnFi  168 (253)
T 2db0_A          103 --ELVK--S--MIPVLFANYRIGDEKTKINVSYALEEIAKANPM---L--MASIVRDFMSMLSSK---NREDKLTALNFI  168 (253)
T ss_dssp             --HHHH--H--HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH---H--HHHHHHHHHHHTSCS---SHHHHHHHHHHH
T ss_pred             --HHHH--h--hHHHHHHHHhcCCccceecHHHHHHHHHHhChH---H--HHHHHHHHHHHhcCC---ChHHHHHHHHHH
Confidence              3333  2  688887777779999999999999999876543   2  135778899999987   877777777777


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      ..+.   +|...-+.- .+|.|..+|.++ +.-++..|+.+|.+++....--+.++.      .-++-+.+.|...++..
T Consensus       169 ~alG---en~~~yv~P-fLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V  237 (253)
T 2db0_A          169 EAMG---ENSFKYVNP-FLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTV  237 (253)
T ss_dssp             HTCC---TTTHHHHGG-GHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHH
T ss_pred             HHHh---ccCccccCc-chHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHH
Confidence            7765   455554443 589999999997 888999999999999985543323322      23444666677777776


Q ss_pred             HHHHHHHhc
Q 040073          335 VRILCSVCK  343 (407)
Q Consensus       335 ~~~L~~l~~  343 (407)
                      ...|..+.-
T Consensus       238 ~egL~rl~l  246 (253)
T 2db0_A          238 KEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            667766654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.78  E-value=0.0017  Score=66.67  Aligned_cols=247  Identities=14%  Similarity=0.087  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      ..|.+|+.++..+.+.+++..   ...++++.|.++|.+.+.  .++..|+.+|..++..+..   .+.  .  .++.++
T Consensus       163 ~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~--~V~~~a~~~l~~i~~~~~~---~~~--~--~~~~~~  230 (621)
T 2vgl_A          163 SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHL--GVVTAATSLITTLAQKNPE---EFK--T--SVSLAV  230 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCHH---HHT--T--HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCc--cHHHHHHHHHHHHHHhChH---HHH--H--HHHHHH
Confidence            677778888888877655422   124889999999976554  4689999999888754332   111  1  344444


Q ss_pred             HHHh----cC-------------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC--------CCCCHHH
Q 040073          192 RVLK----CG-------------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH--------HQFSQQA  246 (407)
Q Consensus       192 ~lL~----~~-------------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~~~~~~  246 (407)
                      ..|.    .+             ++-.+.....+|..+...++... ...-...+..++..+.+.        .+....+
T Consensus       231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~-~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV  309 (621)
T 2vgl_A          231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV-RGRLTECLETILNKAQEPPKSKKVQHSNAKNAV  309 (621)
T ss_dssp             HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH-HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence            4443    22             34566666666666653322111 000012333344332111        0001266


Q ss_pred             HHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-c
Q 040073          247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-R  325 (407)
Q Consensus       247 ~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-~  325 (407)
                      .-.++.++..+...+    .+.. .++..|..+|.+. +++++-.++..|..++........+..   -...++..+. +
T Consensus       310 l~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~~~~~~---~~~~i~~~L~~d  380 (621)
T 2vgl_A          310 LFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSHEAVKT---HIETVINALKTE  380 (621)
T ss_dssp             HHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTHHHHHT---THHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcHHHHHH---HHHHHHHHhccC
Confidence            777788888886322    2222 3577788888765 788999999999999875422222322   3566666666 5


Q ss_pred             CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          326 VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       326 ~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      .+...+..++.+|..++..    .....     .+..|...++. .+...|+.+...+..++.-+
T Consensus       381 ~d~~Ir~~aL~lL~~l~~~----~Nv~~-----Iv~eL~~yl~~-~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          381 RDVSVRQRAVDLLYAMCDR----SNAQQ-----IVAEMLSYLET-ADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             CCHHHHHHHHHHHHHHCCH----HHHHH-----HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHcCh----hhHHH-----HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhc
Confidence            5677889999999999842    12333     55677777774 46777777777666665533

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.68  E-value=0.0087  Score=61.37  Aligned_cols=258  Identities=12%  Similarity=0.064  Sum_probs=163.0

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      +..+.+.+.+++ ..+.-|+..|.++..  ++.-.     ..++.+.++|.+.+.+.-++..|+.++..+...++   +.
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~  182 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP---DL  182 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GG
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hh
Confidence            335566777777 667889999998854  33222     34677888883322222468888888887765332   33


Q ss_pred             hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc----cCCC----------CCH
Q 040073          179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR----DHHQ----------FSQ  244 (407)
Q Consensus       179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~----------~~~  244 (407)
                      +...+  .++.+..+|...++.++.+|+.+|..++..+...  +   ...++.+++.|.    .++-          .++
T Consensus       183 ~~~~~--~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~--~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~  255 (621)
T 2vgl_A          183 VPMGD--WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE--F---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP  255 (621)
T ss_dssp             CCCCS--CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH--H---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred             cCchh--HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH--H---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence            33323  8999999999889999999999999998654321  1   134555554443    2100          046


Q ss_pred             HHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhc---------c-cchhHHHHHHHHHHHHhcCHhhHHHHHhc
Q 040073          245 QASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLD---------V-TERRVCELMLNVLDLLCRCAEGRAELLKH  312 (407)
Q Consensus       245 ~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~---------~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~  312 (407)
                      -.+-..+..|..++..++  .+..+.+  .++.++..+.+         . ....+.-+|+.++..+...++.+..    
T Consensus       256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~----  329 (621)
T 2vgl_A          256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR----  329 (621)
T ss_dssp             HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----
T ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH----
Confidence            788888888888886432  3333333  34444433221         1 0236777888888888754433322    


Q ss_pred             cCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073          313 GAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA  387 (407)
Q Consensus       313 ~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~  387 (407)
                        ++..|.+++.+.++..+-.|+..|..++...++.    .++ ......++..|..+.+...|.+|-.+|..+.
T Consensus       330 --~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~----~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          330 --ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH----EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             --HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH----HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH----HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence              3556777665566889999999999999765432    222 2356677777773457788888888876554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=5.4e-05  Score=54.42  Aligned_cols=48  Identities=15%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.|.||.+++..=..- .|||.|=..||.+||+..+..+||.|++....
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            5899999988744333 59999999999999976434899999987643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.50  E-value=0.01  Score=63.42  Aligned_cols=251  Identities=14%  Similarity=0.126  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHhhhCh---hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073          115 RKCLRRLRSITLQSE---RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM  191 (407)
Q Consensus       115 ~~al~~L~~l~~~~~---~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv  191 (407)
                      ..|+..+..++....   ..--.++  +.+|.++..+.+...  .+++.|..++..+...-  +...+ . .  ++|.|+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~~--~~~a~-~-~--~~~~~~  139 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK--EIQSVASETLISIVNAV--NPVAI-K-A--LLPHLT  139 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHS--CGGGH-H-H--HHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC--CHHHH-H-H--HHHHHH
Confidence            778888888885432   1112222  456666666654443  45665555554433211  11122 1 1  789999


Q ss_pred             HHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073          192 RVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG  270 (407)
Q Consensus       192 ~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~  270 (407)
                      ..|++. .+..+..|..++..|+... .......-...||.+-+.+-+-   .++++++|..++..+|..-+|+..   +
T Consensus       140 ~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~~~~n~d~---~  212 (986)
T 2iw3_A          140 NAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDT---KKEVKAAATAAMTKATETVDNKDI---E  212 (986)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGGGCCCTTT---G
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccC---cHHHHHHHHHHHHHHHhcCCCcch---h
Confidence            999765 7999999999999998654 2222222245777777777766   899999999999999986666542   3


Q ss_pred             CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHH
Q 040073          271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARV  350 (407)
Q Consensus       271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~  350 (407)
                      ..||.|++.+.+.   +-..+++..|...+--.+--.-...  -.+|.|.+-|...+...+..++-+.-|+|+--.|...
T Consensus       213 ~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~  287 (986)
T 2iw3_A          213 RFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV  287 (986)
T ss_dssp             GGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             hhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH
Confidence            4699999999863   2245555555544332222222222  2467777766555677788999999999998777422


Q ss_pred             HHHHHHhChHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhccC
Q 040073          351 LQEMLQVGVVSKLCLVLQ----VDASVKTKERAREILKLNARAWRD  392 (407)
Q Consensus       351 ~~~~~~~g~i~~Ll~ll~----~~~~~~~k~~A~~lL~~l~~~~~~  392 (407)
                      ..     -.+|+|+--++    .-..|++|+.|...+..|.+.-..
T Consensus       288 ~~-----~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          288 IA-----PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HH-----HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             Hh-----hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            22     24555555544    335899999999999999887443

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.42  E-value=9e-05  Score=51.08  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             CcccCccccccCcCceecCCcc-----cccHHHHHHHHhcCCCCCCcccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      +.-.|.||++-..+|.+.||.+     -|=+.||.+|+...++.+||+|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4457999998888898888653     688999999998655789999998763

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.36  E-value=0.00012  Score=54.95  Aligned_cols=46  Identities=9%  Similarity=0.010  Sum_probs=38.6

Q ss_pred             cCccccccCcCce-ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .|++|.-++..=. ++||+|.||..|+..|.++ +...||.|++++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeee
Confidence            6888887776655 7799999999999999876 48899999988643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.14  E-value=0.0084  Score=64.01  Aligned_cols=261  Identities=11%  Similarity=0.102  Sum_probs=170.0

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH---H
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY---L  175 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~---~  175 (407)
                      +..+++.++.+. ..+..+...|..+...+...  .....+.+..|.+.+.+..+    -|.|+.++..|+.....   .
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~----~~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKT----AANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHH----HHHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCC----HHHHHHHHHHHHHhcCCCCCc
Confidence            334555555443 55667777777776542111  11113566777777765433    27888888888854321   1


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      ..++.  +  .++.+...+......+|..|..++..+...-.... +   ..++|.|+..|.+.  .....+..|+.+|-
T Consensus        90 e~~~~--~--~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~---~~~~~~~~~~~~~~--~kw~~k~~~l~~~~  159 (986)
T 2iw3_A           90 EPYIV--Q--LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-I---KALLPHLTNAIVET--NKWQEKIAILAAFS  159 (986)
T ss_dssp             HHHHH--T--THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-H---HHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred             ccchH--H--HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-H---HHHHHHHHHHhccc--cchHHHHHHHHHHH
Confidence            23333  2  57777777777778899999888888865433221 1   35799999999765  25789999999999


Q ss_pred             HhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          256 ELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       256 ~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      .|+....  .++..  -..||.+-+.+-+. .++++..|..++..+|..-+|+.    -...||.||+.|.+.  .....
T Consensus       160 ~~~~~~~--~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p--~~~~~  230 (986)
T 2iw3_A          160 AMVDAAK--DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADP--TEVPE  230 (986)
T ss_dssp             HHHHHSH--HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCT--THHHH
T ss_pred             HHHHHhH--HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcCh--hhhHH
Confidence            9986332  23322  35788888888775 78999999999999998666553    235799999988764  33444


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      ++..|...+--..-   -.-.. +=.+|-|..-|. ..+..+|++++.++.++.+..
T Consensus       231 ~~~~l~~~tfv~~v---~~~~l-~~~~p~l~r~l~-~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          231 TVHLLGATTFVAEV---TPATL-SIMVPLLSRGLN-ERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             HHHHHTTCCCCSCC---CHHHH-HHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhcCeeEeee---cchhH-HHHHHHHHhhhc-cCcchhheeeEEEEcchhhhc
Confidence            56666655542221   11111 124566666676 458889999999999998853

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.08  E-value=0.037  Score=58.64  Aligned_cols=167  Identities=9%  Similarity=-0.020  Sum_probs=108.2

Q ss_pred             hHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073          186 FLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR  264 (407)
Q Consensus       186 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~  264 (407)
                      ++..|+..+. ..+..++..++..|.-+....         ...++.+++.|...  .++-++..++.++.--.....|.
T Consensus       508 ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          508 AIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCH
Confidence            4555555543 346677777888887764222         23467788887754  27777777777776444444444


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCK  343 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~  343 (407)
                      .      +|..|+..+.+..+..++..|+..|..+.....         ..++.++..+.+ .++..+..|..+|..++.
T Consensus       577 ~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a  641 (963)
T 4ady_A          577 S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA  641 (963)
T ss_dssp             H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred             H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            3      367777777665467888889999988876542         246667765554 467888889999999987


Q ss_pred             cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.++.    .     ++..|..++. +.+..+++.|...|.++..
T Consensus       642 Gn~~~----~-----aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          642 GKGLQ----S-----AIDVLDPLTK-DPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             SSCCH----H-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHST
T ss_pred             CCCcH----H-----HHHHHHHHcc-CCCHHHHHHHHHHHHHHhc
Confidence            66552    2     2333333333 5677777777777766544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.05  E-value=0.066  Score=52.16  Aligned_cols=223  Identities=12%  Similarity=0.170  Sum_probs=139.5

Q ss_pred             HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc---------------C--ChhHHHHHHHHHHHhhccCCchh
Q 040073          158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC---------------G--NYQSRSYAIMLLKSIFEVADPFQ  220 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~---------------~--~~~~~~~a~~~L~~Ls~~~~~~~  220 (407)
                      +.-++..|..|...++ .+.++-+.+|..++.++.+++.               +  ..+.+-++.-+++-|+..++...
T Consensus       185 ~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~  263 (480)
T 1ho8_A          185 CYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFAN  263 (480)
T ss_dssp             HHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHH
Confidence            4557777777776665 4555544333467888765542               1  24456788888999987666444


Q ss_pred             hhhchhhh--HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hH----HHHH-hcCchHHHHHHhhcc--cchhHHH
Q 040073          221 LISVKQEF--FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NR----IKAV-EGGGVSVLVDLLLDV--TERRVCE  290 (407)
Q Consensus       221 ~i~~~~g~--i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~----~~~v-~~G~v~~Lv~lL~~~--~~~~~~~  290 (407)
                      .+.. .+.  ++.|+.+++..  ...++.+.++.+|+||..... +.    ..++ ..++ +.+++.|...  +|+++.+
T Consensus       264 ~l~~-~~i~~~~~L~~i~k~s--~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e  339 (480)
T 1ho8_A          264 ELVQ-KYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ  339 (480)
T ss_dssp             HHHT-TSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred             HHHh-cchHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence            4433 343  36788888876  467899999999999998542 22    2233 3344 6677777764  2555554


Q ss_pred             HHHHHHHHH-------hcCHhhHHHHHh------------------------c-cCchHHHHHHHHcC----------Cc
Q 040073          291 LMLNVLDLL-------CRCAEGRAELLK------------------------H-GAGLAVVSKKILRV----------SH  328 (407)
Q Consensus       291 ~al~~L~~L-------~~~~~~r~~i~~------------------------~-~g~i~~Lv~~l~~~----------s~  328 (407)
                      ..-.+...|       +..++.+.++..                        + ...+..|+++|...          ++
T Consensus       340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~  419 (480)
T 1ho8_A          340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK  419 (480)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence            433333333       323333333322                        0 12456777766531          35


Q ss_pred             hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          329 AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       329 ~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .....|+.=+..++++.++.  +..+-+.|+=+.++.+|. +.++.+|..|-..++.+-.
T Consensus       420 ~~laVAc~Digefvr~~P~g--r~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          420 IIIQVALNDITHVVELLPES--IDVLDKTGGKADIMELLN-HSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHCTTH--HHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHH
T ss_pred             ceEEeecccHHHHHHHCcch--hHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            55667777788888877763  555557899888899987 5689999999888865543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.01  E-value=0.16  Score=53.94  Aligned_cols=207  Identities=11%  Similarity=-0.002  Sum_probs=129.1

Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF  219 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~  219 (407)
                      +..|++.+..... ..++..++..|+.+..++++           .++.+++.|.. .++-+|..++.++.-- .....+
T Consensus       509 i~~LL~~~~e~~~-e~vrR~aalgLGll~~g~~e-----------~~~~li~~L~~~~dp~vRygaa~alglA-yaGTGn  575 (963)
T 4ady_A          509 IHDMFTYSQETQH-GNITRGLAVGLALINYGRQE-----------LADDLITKMLASDESLLRYGGAFTIALA-YAGTGN  575 (963)
T ss_dssp             HHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCGG-----------GGHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTSCC
T ss_pred             HHHHHHHHhccCc-HHHHHHHHHHHHhhhCCChH-----------HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCCCC
Confidence            3555555443332 23455566666655544321           46677777765 5666776666666532 222211


Q ss_pred             hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073          220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL  299 (407)
Q Consensus       220 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L  299 (407)
                            ..+|..|+..+.+.  .+..+++.|+.+|..+...++        ..++.++++|.+..++.++..+..+|..+
T Consensus       576 ------~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli  639 (963)
T 4ady_A          576 ------NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIA  639 (963)
T ss_dssp             ------HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence                  24577777776655  378899999999998776543        35788888776654889999999999999


Q ss_pred             hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-CCCHHHHHH
Q 040073          300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-DASVKTKER  378 (407)
Q Consensus       300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~k~~  378 (407)
                      +.+... ..+      +..|..+..+.+..++..|+.+|..+.....+.. ...+  ++.+..|...... +.++.++-.
T Consensus       640 ~aGn~~-~~a------id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~-~~rv--a~~l~~L~~~~~dk~~d~~~~fg  709 (963)
T 4ady_A          640 CAGKGL-QSA------IDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL-NPQV--ADINKNFLSVITNKHQEGLAKFG  709 (963)
T ss_dssp             TSSSCC-HHH------HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTT-CTTH--HHHHHHHHHHHHCSSSCHHHHHH
T ss_pred             ccCCCc-HHH------HHHHHHHccCCCHHHHHHHHHHHHHHhcCCcccc-chHH--HHHHHHHHHHHhcccccHHHHHH
Confidence            865432 222      3455555555568889999999999998655420 0011  2345566666653 235667777


Q ss_pred             HHHHHHHH
Q 040073          379 AREILKLN  386 (407)
Q Consensus       379 A~~lL~~l  386 (407)
                      |+-...++
T Consensus       710 a~iAqGll  717 (963)
T 4ady_A          710 ACVAQGIM  717 (963)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666665

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.00  E-value=0.16  Score=49.52  Aligned_cols=251  Identities=14%  Similarity=0.112  Sum_probs=152.2

Q ss_pred             hcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh---HHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHh
Q 040073          137 AAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES---YLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSI  212 (407)
Q Consensus       137 ~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~L  212 (407)
                      ...++..++++|...... +.....+..+..|...++   ...+++.+.+ .....+... +.+++.-....+..++..+
T Consensus        75 ~~~~~~~~l~lL~~~~~~-d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~-~~~~~l~~~~~~~dd~~~ll~a~~l~~ll  152 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNE-DCKKSVQNLIAELLSSDKYGDDTVKFFQEDP-KQLEQLFDVSLKGDFQTVLISGFNVVSLL  152 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCH-HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCT-THHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhhcChH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhCc-ccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence            345678899999876552 346677777766655543   3344544433 133333332 2233344445555555555


Q ss_pred             hccCCchhhhhchhhhHHH------HHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC--chHHHHHHhhcc-
Q 040073          213 FEVADPFQLISVKQEFFTE------IVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG--GVSVLVDLLLDV-  283 (407)
Q Consensus       213 s~~~~~~~~i~~~~g~i~~------Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G--~v~~Lv~lL~~~-  283 (407)
                      +.....      ....++.      +...|.+.  .+...+-.++.+|..|...++.|..+.+++  .+|.+++++... 
T Consensus       153 ~~~~~~------~~~~l~~l~~~~~~~~~L~~~--~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~  224 (480)
T 1ho8_A          153 VQNGLH------NVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRAT  224 (480)
T ss_dssp             TSTTTC------CHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hccCCc------cHhHHHHHhhhHHHHHHhccc--cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhh
Confidence            432211      1223333      33445442  145566688999999999999999998753  477777655421 


Q ss_pred             ---------------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCch--HHHHHHHHcC-CchhhHHHHHHHHHHhccC
Q 040073          284 ---------------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGL--AVVSKKILRV-SHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       284 ---------------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i--~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~  345 (407)
                                     .+..+.-.++-+++.|+-.++.-..+... +.+  +.|+..+... .++....++.+|.|+....
T Consensus       225 ~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~  303 (480)
T 1ho8_A          225 DSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR  303 (480)
T ss_dssp             C-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred             ccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence                           02345678899999999998877666553 322  4666645443 4788999999999999754


Q ss_pred             Cc--hHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhccCCCCCCc
Q 040073          346 AT--ARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARAWRDSPCVPA  398 (407)
Q Consensus       346 ~~--~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~  398 (407)
                      ..  .....+++-.|.+.+++..|+..  .++...+--..+...|.+....-+.++-
T Consensus       304 ~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDe  360 (480)
T 1ho8_A          304 VKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE  360 (480)
T ss_dssp             STTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             chhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            21  23344444333336778888765  5888888888888888776554443333

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.81  E-value=0.02  Score=56.54  Aligned_cols=246  Identities=11%  Similarity=0.064  Sum_probs=154.7

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChh--HHHHHHhcCcHHHHHHHhh--ccC-----C-CCchHHHHHHHHHh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSER--NRSCLEAAGAIEFLATIIT--KSD-----A-GSDECDEALSILYH  167 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~--~~~-----~-~~~~~~~a~~~L~~  167 (407)
                      -...|+..|.++. +.|..|+-.||.+.+....  .|..-......-.|+.+|.  ...     . ...++|.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            3457778888877 9999999999998776431  1110000122233333332  211     1 12468988888888


Q ss_pred             cCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHH
Q 040073          168 LNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS  247 (407)
Q Consensus       168 L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  247 (407)
                      + .+-+..      ..  ++..|+..+..+.+++|.-+.-.|.++.   +   .+..-.++++.++.-|++.   +++++
T Consensus       255 L-~hLp~e------~~--IL~qLV~~l~~~~WEVRHGGLLGLKYL~---D---LL~~Ld~Vv~aVL~GL~D~---DDDVR  316 (800)
T 3oc3_A          255 I-YPLIGP------ND--IIEQLVGFLDSGDWQVQFSGLIALGYLK---E---FVEDKDGLCRKLVSLLSSP---DEDIK  316 (800)
T ss_dssp             H-TTTSCS------CC--HHHHHTTGGGCSCHHHHHHHHHHHHHTG---G---GCCCHHHHHHHHHHHTTCS---SHHHH
T ss_pred             H-HhCChh------HH--HHHHHHhhcCCCCeeehhhhHHHHHHHH---H---HHHHHHHHHHHHHhhcCCc---ccHHH
Confidence            7 543322      22  6777777778889999999999999991   1   1111357889999999988   99999


Q ss_pred             HHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccc-hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073          248 KAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTE-RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV  326 (407)
Q Consensus       248 ~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~-~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~  326 (407)
                      ..|+.+|..++ .++...     ..+..+.+.|.+..+ .......+..|+.|+..+..   ......-||.|.-++.+.
T Consensus       317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt  387 (800)
T 3oc3_A          317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP  387 (800)
T ss_dssp             HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS
T ss_pred             HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC
Confidence            99999999998 222211     245566667765422 23345667788888776631   112245677777766666


Q ss_pred             CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          327 SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       327 s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      -..++..++.+|..+.    +..+..         .+..-+-....+.+++.+..+.+
T Consensus       388 ITSVR~AVL~TL~tfL----~~~~LR---------LIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          388 VPEVRTSILNMVKNLS----EESIDF---------LVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             SHHHHHHHHHHTTTCC----CHHHHH---------HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH----hhhHHH---------HHHHHHHhCCcHHHHHHHHHHHH
Confidence            6888998888887766    221222         22222222346777877777665

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.79  E-value=0.00023  Score=65.88  Aligned_cols=48  Identities=25%  Similarity=0.506  Sum_probs=38.7

Q ss_pred             ccCccccccCcC----cee----cCCcccccHHHHHHHHhcCCC---------CCCccccccccc
Q 040073           10 FLCPISLQLMRD----PVT----VSTGITYDRVNIERWLFTCKN---------NTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~d----Pv~----~~~g~t~~r~~i~~~~~~~~~---------~~cP~~~~~~~~   57 (407)
                      .-|+||...+.+    |-.    ..|||.|-..||.+|+....+         ..||.|+++++.
T Consensus       309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            469999999987    533    369999999999999975211         579999998876

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.17  Score=42.71  Aligned_cols=213  Identities=12%  Similarity=0.097  Sum_probs=141.1

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCc
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      ++..++++|+++-=  .++.+|+.++..++..-+   +++.  .  .+..|+.+++ +.....-+..+.+++.++...+.
T Consensus        33 ~l~~lI~~LDDDlw--tV~kNAl~vi~~i~~~~~---el~e--p--l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           33 VLKKLIELLDDDLW--TVVKNAISIIMVIAKTRE---DLYE--P--MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCG---GGHH--H--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhccHHH--HHHHhHHHHHHHHHHHhH---HHHH--H--HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            56777888875542  369999999988775433   2222  1  4666666765 45667767888899988865432


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL  298 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  298 (407)
                         +..  +.+|.|..=++-+   ++.++-+...+|-.++...+.-.    .+++.-+..+|.+. +..-+-.|   |..
T Consensus       104 ---~v~--~vVp~lfanyrig---d~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~a---LnF  167 (253)
T 2db0_A          104 ---LVK--SMIPVLFANYRIG---DEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTA---LNF  167 (253)
T ss_dssp             ---HHH--HHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHH---HHH
T ss_pred             ---HHH--hhHHHHHHHHhcC---CccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHH---HHH
Confidence               322  5678888888888   99999999999999876332211    23456677788764 44334444   444


Q ss_pred             HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073          299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      +..-+++.-+-+. + .+|.|..+|.+.+.-.+..|+.+|.+++..  +..++..     .+.++ .-+. +.+.-++.+
T Consensus       168 i~alGen~~~yv~-P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRki-----i~~kl-~e~~-D~S~lv~~~  236 (253)
T 2db0_A          168 IEAMGENSFKYVN-P-FLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKV-----VIKRL-EELN-DTSSLVNKT  236 (253)
T ss_dssp             HHTCCTTTHHHHG-G-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHH-----HHHHH-HHCC-CSCHHHHHH
T ss_pred             HHHHhccCccccC-c-chHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHH-----HHHHH-HHhc-CcHHHHHHH
Confidence            4443444444444 3 689999977777888999999999999974  3334443     22233 4344 568888888


Q ss_pred             HHHHHHHHHh
Q 040073          379 AREILKLNAR  388 (407)
Q Consensus       379 A~~lL~~l~~  388 (407)
                      ..+-|..+.-
T Consensus       237 V~egL~rl~l  246 (253)
T 2db0_A          237 VKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877766544

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.76  E-value=0.00066  Score=52.08  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             CcccCccccc-cCcCcee--cCCcccccHHHHHHHHh
Q 040073            8 AHFLCPISLQ-LMRDPVT--VSTGITYDRVNIERWLF   41 (407)
Q Consensus         8 ~~~~Cpi~~~-~~~dPv~--~~~g~t~~r~~i~~~~~   41 (407)
                      +++.|+||.+ .+++||.  +.|||+||+.|++.++.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4689999996 5899999  89999999999999543

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0025  Score=59.89  Aligned_cols=63  Identities=17%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHH
Q 040073            9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQ   74 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~   74 (407)
                      .+.|||+...|+.||.- .|.|.  ||...+.+...+.+...||+|++.+...   +|.....+.++++
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~---dL~ID~~~~~IL~  314 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE---NLAISEFVDDILQ  314 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG---GEEEBHHHHHHHT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH---HeeEcHHHHHHHH
Confidence            37999999999999966 59998  9998888877665678999999988764   7777777766654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.27  E-value=0.16  Score=47.94  Aligned_cols=241  Identities=15%  Similarity=0.074  Sum_probs=137.0

Q ss_pred             CccHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHH
Q 040073           64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIE  142 (407)
Q Consensus        64 ~~n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~  142 (407)
                      .+|..+|+++--+...-..       .+...  ---+..+.+.+++++ -.+-.|++.|.++...  +.-+.     ..+
T Consensus        79 s~d~~lKrLvYLyl~~~~~-------~~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~  142 (355)
T 3tjz_B           79 SNDPTLRRMCYLTIKEMSC-------IAEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IER  142 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHTT-------TSSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHH
T ss_pred             CCCHHHHHHHHHHHHHhCC-------CHHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHH
Confidence            4578888888776655331       11111  123557788888887 7777899999998654  22222     245


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073          143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI  222 (407)
Q Consensus       143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  222 (407)
                      .+.+.|.+.++  -++..|+-....|....++   ++.  +  +++.+-+++.+.++.+.-+|..+|..+...+      
T Consensus       143 ~lk~~L~d~~p--yVRk~A~l~~~kL~~~~pe---~v~--~--~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d------  207 (355)
T 3tjz_B          143 YMKQAIVDKVP--SVSSSALVSSLHLLKCSFD---VVK--R--WVNEAQEAASSDNIMVQYHALGLLYHVRKND------  207 (355)
T ss_dssp             HHHHHHTCSSH--HHHHHHHHHHHHHTTTCHH---HHH--T--THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHcCCCCH--HHHHHHHHHHHHHhccCHH---HHH--H--HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc------
Confidence            56666666655  4588888777777655443   332  2  6888999999899999999999999987543      


Q ss_pred             hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073          223 SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       223 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~  302 (407)
                         ..++..|+..+..++-.++-++-.-++.+..++..++..   .....++.|...|++. +..+.-+|+.++..+...
T Consensus       208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~  280 (355)
T 3tjz_B          208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGC  280 (355)
T ss_dssp             ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCS-SHHHHHHHHHHHTC----
T ss_pred             ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCC
Confidence               124566666665431114555555555555554432100   1234556666677665 778888999998888653


Q ss_pred             HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073          303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      +.   ....  .++..|..++.+.++..+-.|+..|..+....++
T Consensus       281 ~~---~~~~--~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~  320 (355)
T 3tjz_B          281 SA---KELA--PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS  320 (355)
T ss_dssp             ------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred             CH---HHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence            32   1222  2456677767767788899999999888875443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.13  E-value=0.29  Score=46.17  Aligned_cols=137  Identities=14%  Similarity=0.067  Sum_probs=100.2

Q ss_pred             HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhh
Q 040073          142 EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQL  221 (407)
Q Consensus       142 ~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~  221 (407)
                      ..+++++.+.+.  ..+.-..-.+.+++...   .+.+.     ++..|.+=++++++-+|..|.++|.++... +    
T Consensus        71 ~~v~kl~~s~d~--~lKrLvYLyl~~~~~~~---~e~iL-----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-~----  135 (355)
T 3tjz_B           71 FAMTKLFQSNDP--TLRRMCYLTIKEMSCIA---EDVII-----VTSSLTKDMTGKEDSYRGPAVRALCQITDS-T----  135 (355)
T ss_dssp             HHHHGGGGCCCH--HHHHHHHHHHHHHTTTS---SCGGG-----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT-T----
T ss_pred             HHHHHHhcCCCH--HHHHHHHHHHHHhCCCH---HHHHH-----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH-H----
Confidence            445666666554  23555555555666542   23332     577888888999999999999999999533 2    


Q ss_pred             hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          222 ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       222 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      +.  ....+.+.+.|.+.   ++-+++.|+-+.+.|....+.   +++ +.++.+-+++.+. ++.+.-.|+++|..+..
T Consensus       136 m~--~~l~~~lk~~L~d~---~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          136 ML--QAIERYMKQAIVDK---VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSD-NIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             TH--HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCC-CccHHHHHHHHHHHHHh
Confidence            22  24677788889888   999999999999999864433   343 6899999999886 78888999999999987


Q ss_pred             CH
Q 040073          302 CA  303 (407)
Q Consensus       302 ~~  303 (407)
                      ++
T Consensus       206 ~d  207 (355)
T 3tjz_B          206 ND  207 (355)
T ss_dssp             TC
T ss_pred             hc
Confidence            54

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.04  E-value=0.11  Score=46.25  Aligned_cols=151  Identities=17%  Similarity=0.175  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCC---chHHHHHHHHHhcCCCh-hHHHhHhhccchhhHHH
Q 040073          114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGS---DECDEALSILYHLNVSE-SYLKSIVINNGEEFLES  189 (407)
Q Consensus       114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~---~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i~~  189 (407)
                      .+.|+.-|..+|.+ ++.|..+.+++..--|-.+|...+.+.   -.+-.++++++.|.+.+ .+...++...+  .+|.
T Consensus        73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE--iipl  149 (268)
T 2fv2_A           73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE--IIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT--HHHH
T ss_pred             HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhh--HHHH
Confidence            46788888888875 899999999998888888887766532   24677888888877644 34456666565  9999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073          190 LMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR  262 (407)
Q Consensus       190 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~  262 (407)
                      ..+.++.|+.-.|.-|+-++..+..++..-..+.....       ++..+|.-+...  .++...+...++-..|+.++.
T Consensus       150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~--ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE--PSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999877765555544322       233333323222  388999999999999998887


Q ss_pred             hHHHHHh
Q 040073          263 NRIKAVE  269 (407)
Q Consensus       263 n~~~~v~  269 (407)
                      .+..+..
T Consensus       228 ar~aL~~  234 (268)
T 2fv2_A          228 AREALRQ  234 (268)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.082  Score=47.98  Aligned_cols=191  Identities=13%  Similarity=0.049  Sum_probs=112.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCch----hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF----QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR  262 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~  262 (407)
                      +| |-..|.+.++..|..|...|..+.......    ..+.......+.+-..+.+.   +..++..++.+|..++..-.
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds---N~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS---NVVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS---SHHHHHHHHHHHHHHHTTCC
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhh
Confidence            55 568888999999999999988765432111    01111112345566778777   99999999999998875321


Q ss_pred             ----hHH--HHHhcCchHHHHHH-hhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073          263 ----NRI--KAVEGGGVSVLVDL-LLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV  335 (407)
Q Consensus       263 ----n~~--~~v~~G~v~~Lv~l-L~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~  335 (407)
                          .+.  ...-...+|.|++- |.+. ...+++.+..+|..++........+      +..++..+.+.++..+..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHH
Confidence                111  12223467888876 5554 5677888888877765422111111      12233334445688888888


Q ss_pred             HHHHHHhccCCchHH-HHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          336 RILCSVCKFSATARV-LQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       336 ~~L~~l~~~~~~~~~-~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      ..|..+....+...+ ....+. ..++.+..++. +.++.+|..|..++--+-++.
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG-HGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT-CSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHh
Confidence            888877643211100 111111 23344555565 669999999999887766543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.41  Score=43.28  Aligned_cols=185  Identities=12%  Similarity=0.055  Sum_probs=114.2

Q ss_pred             HHHHhcCCC-hHHHHHHHHHHHHhhhChhH--HHHHH-hcC-cHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh--h--
Q 040073          103 ILNDAKKSP-STGRKCLRRLRSITLQSERN--RSCLE-AAG-AIEFLATIITKSDAGSDECDEALSILYHLNVSE--S--  173 (407)
Q Consensus       103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~--r~~i~-~~G-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~--~--  173 (407)
                      +-.+|.+.+ ..|..|++.|..+....+..  ..... ..+ .++.+...+.+...  .++..++.+|..++..-  .  
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~--~v~~~al~~l~~~~~~~~~~~~   91 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV--VAQEQAIVALNSLIDAFASSSL   91 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCC---C
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHhhhhhc
Confidence            456777776 99999999999987653221  11111 122 34555566654333  45778888777654311  0  


Q ss_pred             HHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      .........+ ..++.|+.- |.++...++..|..++..+.......      ..+++.++..+++.   ++.++..++.
T Consensus        92 ~~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~K---npkv~~~~l~  161 (278)
T 4ffb_C           92 KNAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKK---LPKLIAAAAN  161 (278)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCS---CHHHHHHHHH
T ss_pred             ccchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhcc---CHHHHHHHHH
Confidence            0111111112 267777764 77778889999999988876443221      12456677778888   9999999998


Q ss_pred             HHHHhCCC----CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          253 LLVELCPW----GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       253 aL~~L~~~----~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .|..+...    .-+....+. .+++.+..+|.+. +.++++.|..++..+-.
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence            88876542    112222222 2456677778776 89999999999988865

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.81  E-value=0.0068  Score=56.74  Aligned_cols=64  Identities=13%  Similarity=0.189  Sum_probs=52.4

Q ss_pred             cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHH
Q 040073            9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQA   75 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~   75 (407)
                      .+.|||+...|+.|+.. .|.|.  ||.....+...+.+...||+|++.+...   +|.....+.+.+..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~---dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE---SLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG---GEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH---HeEEcHHHHHHHHh
Confidence            47999999999999966 59999  9999988887766678999999988764   77777767666543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.76  E-value=0.14  Score=46.18  Aligned_cols=179  Identities=10%  Similarity=0.073  Sum_probs=109.8

Q ss_pred             HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcC-cHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-hhHHHhHh
Q 040073          103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAG-AIEFLATIITKSDAGSDECDEALSILYHLNVS-ESYLKSIV  179 (407)
Q Consensus       103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~i  179 (407)
                      +...+.+.+ ..+.+|+..|......+++  ..+.... .++.+.--+.+.+  ..+...++.+|..+... .+..-.+.
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N--~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETN--PAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHhccccch
Confidence            334445556 7778889888887655432  2222211 1222221112222  23455555555543210 00000111


Q ss_pred             h-ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          180 I-NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       180 ~-~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      . +.+ .++|.|+.-+......+|+.+-.++..+....       -...+++.+++-+++.   |...+...+..|..+-
T Consensus       127 ~~ea~-~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksK---N~R~R~e~l~~l~~li  195 (266)
T 2of3_A          127 QEEVS-AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSK---NARQRSECLLVIEYYI  195 (266)
T ss_dssp             HHHHH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHH
Confidence            1 112 37899999998888889999999998876432       2234677788888888   9999999998888875


Q ss_pred             CCCchHHHHHhcCch---HHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          259 PWGRNRIKAVEGGGV---SVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       259 ~~~~n~~~~v~~G~v---~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      ....-.    ...++   +.+.+++.+. +..+++.|+.++..+-.
T Consensus       196 ~~~G~~----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          196 TNAGIS----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHCSG----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            422111    23468   9999999886 88999999999886654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.38  E-value=0.8  Score=42.12  Aligned_cols=169  Identities=12%  Similarity=-0.008  Sum_probs=99.0

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHH-HHhhccC--CCCchHHHHHHHHHhcCCChh
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLA-TIITKSD--AGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv-~lL~~~~--~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      ...+..+.+.++=+.+.+.-++..+|.++.+ +.....+.+.+.-..++ .++....  .....+--+++++.|+-.+..
T Consensus       102 ~~~l~~l~kil~WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          102 VQQLQILWKAINCPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHHHHTSCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             hHHHHHHHHHHcCCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            3444444444321216667777777777664 55555665533323333 2333211  111236778889999887776


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      ...-++.... .+++.+...+.+.+..++..++.++.|++.........-....++..+..+++..  .+.++.-.++.|
T Consensus       181 g~~~l~~~~~-~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~--~d~EalyR~LvA  257 (304)
T 3ebb_A          181 GQKLMMSQRE-SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV--QDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHHHTHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred             hHHHHHHHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc--CCHHHHHHHHHH
Confidence            4433333322 3566666666567889999999999999854211111111122445555666554  388999999999


Q ss_pred             HHHhCCCCchHHHHHh
Q 040073          254 LVELCPWGRNRIKAVE  269 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~  269 (407)
                      |.+|...+.....+.+
T Consensus       258 LGtL~~~~~~~~~lak  273 (304)
T 3ebb_A          258 LGTLISDDSNAVQLAK  273 (304)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCChhHHHHHH
Confidence            9999986655555554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.33  E-value=0.86  Score=40.48  Aligned_cols=207  Identities=13%  Similarity=0.062  Sum_probs=127.7

Q ss_pred             hhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCC----C------CchHHHHHHHHH
Q 040073           98 TQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDA----G------SDECDEALSILY  166 (407)
Q Consensus        98 ~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~----~------~~~~~~a~~~L~  166 (407)
                      ..+-.++..|..+ +.|..|+.+|..--..-++.-..+=. -|.+..|++=+-+-.+    +      ..-..+|+..|.
T Consensus         3 ~~i~qli~~L~~p-~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            3 EKIYQWINELSSP-ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHHTSST-TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc-hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            3456677777766 67888888777653332333333333 5777777655533221    0      012578888888


Q ss_pred             hcCCChhHHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCC
Q 040073          167 HLNVSESYLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHH  240 (407)
Q Consensus       167 ~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~  240 (407)
                      -++.+.+....++. ++  ..--|--.|+..+     ...|..+..+++.|...++.-. ......++||..++.++.| 
T Consensus        82 cvAshpetr~~Fl~-a~--iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-  157 (268)
T 2fv2_A           82 CVASHPETRSAFLA-AH--IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-  157 (268)
T ss_dssp             HHHHCTTTHHHHHH-TT--GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred             HHHcCcchhhHHHH-cc--chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence            88888775555554 44  3334445565432     3467888999999987655322 2233467999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCchHHHHHh--------cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073          241 QFSQQASKAALKLLVELCPWGRNRIKAVE--------GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK  311 (407)
Q Consensus       241 ~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~  311 (407)
                        +.-.+..|.-.+..+-.++.+-.-+..        ..++..++.-+...++..+....+.+-..|+.++..|.++..
T Consensus       158 --selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~  234 (268)
T 2fv2_A          158 --SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ  234 (268)
T ss_dssp             --CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              888888888777776655543222211        012333333333333667777888888888888877777654

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=94.72  E-value=0.025  Score=50.34  Aligned_cols=47  Identities=15%  Similarity=0.323  Sum_probs=37.9

Q ss_pred             ccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073           10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      ..|.||.++..-=+.-+ ||+.|-+.|+.+|++..+...||.|+....
T Consensus       181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            47999999887554443 899999999999998655679999988753

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.67  E-value=0.91  Score=48.73  Aligned_cols=261  Identities=10%  Similarity=0.066  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc----CCCCchHHHHHHHHHhcCCChhHHHhHhhc---cchh
Q 040073          113 TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS----DAGSDECDEALSILYHLNVSESYLKSIVIN---NGEE  185 (407)
Q Consensus       113 ~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~---~gg~  185 (407)
                      .|..|...|..++..-+   +.+.. -.++.+-+.|...    ...-..++.|+.++..++.+......-+..   .- .
T Consensus       377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~-~  451 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL-N  451 (960)
T ss_dssp             HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC-C
T ss_pred             cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc-c
Confidence            44556667777765532   11110 1233333444421    111123788888888876421101100000   00 0


Q ss_pred             hHHH----HHHHHhcC---ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073          186 FLES----LMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC  258 (407)
Q Consensus       186 ~i~~----Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~  258 (407)
                      ..+.    ++..|.+.   .+-+|..|+++|..++..-.  ...  ...+++.+++.|.+.   +..++..|+.||.+++
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~--l~~~l~~l~~~L~d~---~~~V~~~A~~Al~~~~  524 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ--LIELMPILATFLQTD---EYVVYTYAAITIEKIL  524 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH--HHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH--HHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHH
Confidence            2232    33345555   78899999999999976421  122  235788899999877   8999999999999998


Q ss_pred             CCCc---------hHHHHHh--cCchHHHHHHhhccc----chhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHH
Q 040073          259 PWGR---------NRIKAVE--GGGVSVLVDLLLDVT----ERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKK  322 (407)
Q Consensus       259 ~~~~---------n~~~~v~--~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~  322 (407)
                      ...+         .+..+..  ...++.|+.++....    .....+.++.+|..++..- +.-.....  ..++.|+..
T Consensus       525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~  602 (960)
T 1wa5_C          525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEI  602 (960)
T ss_dssp             TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHH
T ss_pred             hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence            7421         2332322  234455555555420    0112356666666654421 11111111  133444544


Q ss_pred             HHcC-----CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073          323 ILRV-----SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW  390 (407)
Q Consensus       323 l~~~-----s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      +...     ++......+.+|..+......+ ... ......++.+..+|+.+ .....+.+..++..+-+..
T Consensus       603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~-~~~-~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQ-NLP-LLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG-GHH-HHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc-hHH-HHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHHhc
Confidence            4331     2345566788888877652211 222 22345778888888754 3455666777776665543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.50  E-value=0.8  Score=42.14  Aligned_cols=202  Identities=16%  Similarity=0.126  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccc-h-hhHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNG-E-EFLES  189 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g-g-~~i~~  189 (407)
                      +.+..++..|..........   ......+..|.+++ .....  .+--++.+++.+..+... ...+.+.+ | ..+..
T Consensus        79 ~~el~~L~~l~~~l~~~s~~---~~~~~~l~~l~kil-~WP~~--~~fPvLDLlRl~~l~p~~-~~~~~~~~~~~~l~~~  151 (304)
T 3ebb_A           79 EDDLILLEKILSLICNSSSE---KPTVQQLQILWKAI-NCPED--IVFPALDILRLSIKHPSV-NENFCNEKEGAQFSSH  151 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCSS---CCCHHHHHHHHHHH-TSCTT--TCHHHHHHHHHHTTSHHH-HHHHHSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCC---ccchHHHHHHHHHH-cCCHH--hHHHHHHHHHHHHcCccH-HHHhhccccchHHHHH
Confidence            55566666665543321100   01112357777777 44432  266777788877776643 34444322 1 02222


Q ss_pred             HHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC---chH
Q 040073          190 LMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG---RNR  264 (407)
Q Consensus       190 Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~---~n~  264 (407)
                      +...+.. +++..+.-+.+++.|+-.....+..+.. ...+++.+...+...   +..++.+++..++|++...   ...
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~---nknl~iA~ATl~~NlAv~~~~~~~~  228 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS---NKNIHIALATLALNYSVCFHKDHNI  228 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhhcCCc
Confidence            3333332 3566788999999999877666554443 223555555555555   8899999999999998731   111


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV  326 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~  326 (407)
                      ..  ..-.+..+.+++....+.+..-.++.+|.+|...+....++... -++...++.+.+.
T Consensus       229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~-l~~~~~v~~~~~~  287 (304)
T 3ebb_A          229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKS-LGVDSQIKKYSSV  287 (304)
T ss_dssp             HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHGGGGGGC
T ss_pred             hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHH-cCHHHHHHHHHhC
Confidence            11  11134444555554447788899999999998765444455543 3556556655554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.42  E-value=5.4  Score=37.82  Aligned_cols=190  Identities=15%  Similarity=0.129  Sum_probs=116.3

Q ss_pred             HHHHHhcCCC--hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccC---------CCCchHHHHHHHHHhcC
Q 040073          102 KILNDAKKSP--STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSD---------AGSDECDEALSILYHLN  169 (407)
Q Consensus       102 ~ll~~L~~~~--~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~---------~~~~~~~~a~~~L~~L~  169 (407)
                      ..+..|.+..  +...+.+..|+.-.+.+ ......+. .+|+..|+.+|..-.         .....+...+..|..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            3455555443  22234566666544443 34445555 678999999996421         11123567778888888


Q ss_pred             CChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhch---------hhhHHHHHHHcc
Q 040073          170 VSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISVK---------QEFFTEIVNVLR  237 (407)
Q Consensus       170 ~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~~---------~g~i~~Lv~lL~  237 (407)
                      .+..+...++....  .+..|+..|.+.++.++..+..+|..++...+  + ...+..+         ..-+..+|..|+
T Consensus       149 N~~~G~~~vl~~~~--~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          149 NNKFGIKTMLETEE--GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             SSHHHHHHHHTCSS--HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             cchhhHHHHHcChH--HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            77777777777655  79999999999999999999999999887654  2 3222211         112566788887


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073          238 DHHQFSQQASKAALKLLVELCPWGR-------NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL  298 (407)
Q Consensus       238 ~~~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~  298 (407)
                      ++  .+.+.+.+++..+-.+....+       -|..+...| +..+++.|....++.+ ..-+.+...
T Consensus       227 ~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~lr~~~~~~L-~~Qi~~fe~  290 (383)
T 3eg5_B          227 SG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDM-KVQLCVFDE  290 (383)
T ss_dssp             TT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHTTSCCHHH-HHHHHHHHH
T ss_pred             cc--CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-hHHHHHHHhcCCChhH-HHHHHHHHH
Confidence            64  266777666666555655433       244445667 5555556766433333 333344443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.05  E-value=4.3  Score=35.57  Aligned_cols=161  Identities=16%  Similarity=0.137  Sum_probs=101.1

Q ss_pred             HHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCC---------CCchHHHHHHHHHhcCCChhHHHhHhhccchhh
Q 040073          117 CLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDA---------GSDECDEALSILYHLNVSESYLKSIVINNGEEF  186 (407)
Q Consensus       117 al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~---------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~  186 (407)
                      -+..|+...+. .....+.+ ..||+..|+.+|.....         ....+...+..|..+..+..+...++...+  .
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~--~   97 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE--G   97 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSS--H
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcH--H
Confidence            44555543333 33445555 57788999998865311         112366778888888877777777776655  7


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhch---------hhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISVK---------QEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~~---------~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      +..|+..|.+.+..++..+..+|..++..++  . ...+..+         ..-+..+|+.+++.  .+.+.+.+.+..+
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~~~m~lI  175 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLI  175 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC--ChHHHHHHHHHHH
Confidence            9999999999999999999999998887654  3 3322211         11345577777654  2566666666555


Q ss_pred             HHhCCCCc-------hHHHHHhcCchHHHHHHhhcc
Q 040073          255 VELCPWGR-------NRIKAVEGGGVSVLVDLLLDV  283 (407)
Q Consensus       255 ~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~  283 (407)
                      -.+....+       -|..+...| +..+++.|+..
T Consensus       176 N~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~  210 (233)
T 2f31_A          176 NALITPAEELDFRVHIRSELMRLG-LHQVLQELREI  210 (233)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHC
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhcc
Confidence            55555443       244445566 55555666553

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.96  E-value=11  Score=40.13  Aligned_cols=174  Identities=16%  Similarity=0.158  Sum_probs=96.9

Q ss_pred             CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc---c--cCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhc
Q 040073          197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL---R--DHHQFSQQASKAALKLLVELCPW-GRNRIKAVEG  270 (407)
Q Consensus       197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~--~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~  270 (407)
                      .+...++.|..++..++........     ..++.++.++   .  +.   ++.++..++++|..++.. ..+. .... 
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~---~~~vr~~a~~~l~~~~~~l~~~~-~~l~-  545 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL---NVKLLGTALETMGSYCNWLMENP-AYIP-  545 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHTHHHHC-----CHH-
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc---CHHHHHHHHHHHHHHHHHHhcCH-HHHH-
Confidence            5778899999999999765432211     2344444433   2  33   788999999999998752 1121 1111 


Q ss_pred             CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHc--CCchhhHHHHHHHHHHhccCCc
Q 040073          271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILR--VSHAASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~--~s~~~~e~a~~~L~~l~~~~~~  347 (407)
                      .+++.|+..| +   +.++..|+.+|..++.  +.+..+... ...+..+.+.+.+  .+...++....++..+....+.
T Consensus       546 ~vl~~l~~~l-~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~  619 (971)
T 2x1g_F          546 PAINLLVRGL-N---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP  619 (971)
T ss_dssp             HHHHHHHHHH-H---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHh-C---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence            2455555555 2   5789999999999995  233444332 1233444454444  2467788888898888864332


Q ss_pred             hHHHHHHHHhChHHHHHHHH----hcCC-CHHHHHHHHHHHHHHHh
Q 040073          348 ARVLQEMLQVGVVSKLCLVL----QVDA-SVKTKERAREILKLNAR  388 (407)
Q Consensus       348 ~~~~~~~~~~g~i~~Ll~ll----~~~~-~~~~k~~A~~lL~~l~~  388 (407)
                      ++....+.  ..+++++..+    +... ++..+..+...+..|..
T Consensus       620 ~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  663 (971)
T 2x1g_F          620 EEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST  663 (971)
T ss_dssp             THHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence            22222221  2344444433    3222 34456666666666654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.86  E-value=1.3  Score=39.71  Aligned_cols=139  Identities=14%  Similarity=0.061  Sum_probs=92.9

Q ss_pred             hcCChhHHHHHHHHHHHhhc---cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073          195 KCGNYQSRSYAIMLLKSIFE---VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG  271 (407)
Q Consensus       195 ~~~~~~~~~~a~~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G  271 (407)
                      .+.+..+...+..+|..+..   ..+++-.-....-++|.|+.-+.+.   ...++..+-.+|..++..      .--..
T Consensus        97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~---k~~vR~~~r~il~~l~~v------~~~~~  167 (266)
T 2of3_A           97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA---KDNMRTSVRDIVNVLSDV------VGPLK  167 (266)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH------HCHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHH------CCHHH
Confidence            35677777777777777632   2222221112234789999999887   778888877777766531      11122


Q ss_pred             chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCch---HHHHHHHHcCCchhhHHHHHHHHHHhccCCch
Q 040073          272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGL---AVVSKKILRVSHAASDRAVRILCSVCKFSATA  348 (407)
Q Consensus       272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i---~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~  348 (407)
                      .++.+++-+.+. +...++.++..+..+-.. .|-.   . ..++   |.+.+++.+.+..+++.|+.++..+..+.+++
T Consensus       168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~-~G~~---~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          168 MTPMLLDALKSK-NARQRSECLLVIEYYITN-AGIS---P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH-HCSG---G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHh-cCCC---c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            456677766665 678888998888877552 2222   2 3468   88888777777889999999999888876653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.07  E-value=0.87  Score=40.11  Aligned_cols=77  Identities=16%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             cCchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073          270 GGGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC  339 (407)
Q Consensus       270 ~G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~  339 (407)
                      .||+..|+..|..-          .+......++.+|..+..+..|...+..+..++..++..|...+...+..++.+|.
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            45566666666531          02355678999999999999999999999888888888766556788889999999


Q ss_pred             HHhccCC
Q 040073          340 SVCKFSA  346 (407)
Q Consensus       340 ~l~~~~~  346 (407)
                      .+|..+.
T Consensus       122 ~lc~~~~  128 (233)
T 2f31_A          122 ALCILPQ  128 (233)
T ss_dssp             HHHTCSS
T ss_pred             HHHhCCC
Confidence            9998754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.66  E-value=1.4  Score=47.76  Aligned_cols=151  Identities=5%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             CChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCH--HHHHHHHHHHHHhCCCCchHHHHHhcCch
Q 040073          197 GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQ--QASKAALKLLVELCPWGRNRIKAVEGGGV  273 (407)
Q Consensus       197 ~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~--~~~~~A~~aL~~L~~~~~n~~~~v~~G~v  273 (407)
                      .++..++.++.+++.++...... ..-.. ..+++.|++++......++  .++..++++|...+..-....     ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-----~~L  538 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-----NFL  538 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-----HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-----HHH
Confidence            47999999999999998765432 21222 3578889998874200012  233355567665544211111     234


Q ss_pred             HHHHHHhhcc---cchhHHHHHHHHHHHHhcCHhhHHHHHh-c----cCchHHHHHHH----HcCCchhhHHHHHHHHHH
Q 040073          274 SVLVDLLLDV---TERRVCELMLNVLDLLCRCAEGRAELLK-H----GAGLAVVSKKI----LRVSHAASDRAVRILCSV  341 (407)
Q Consensus       274 ~~Lv~lL~~~---~~~~~~~~al~~L~~L~~~~~~r~~i~~-~----~g~i~~Lv~~l----~~~s~~~~e~a~~~L~~l  341 (407)
                      ++++..|..+   +.+.+++.|+++|..||..  .+..+.. .    .--++.++..+    .+...........++..+
T Consensus       539 ~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v  616 (1023)
T 4hat_C          539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII  616 (1023)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5544444432   1467999999999999973  2333331 0    01234443333    234566677788888888


Q ss_pred             hccCCchHHHHHHH
Q 040073          342 CKFSATARVLQEML  355 (407)
Q Consensus       342 ~~~~~~~~~~~~~~  355 (407)
                      ....++...+.+.+
T Consensus       617 i~~~~~~~~~~~~l  630 (1023)
T 4hat_C          617 ISEERSVAERNRLL  630 (1023)
T ss_dssp             HTTCCSHHHHHHHH
T ss_pred             HHhCCCHhhHHHHH
Confidence            88776654344433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.63  E-value=0.95  Score=43.11  Aligned_cols=115  Identities=16%  Similarity=0.239  Sum_probs=80.2

Q ss_pred             cCchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073          270 GGGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC  339 (407)
Q Consensus       270 ~G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~  339 (407)
                      .+|+..|+.+|..-          .+......++.+|..+..+..|...+..+..+|..++..|....+..+..++.+|.
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            55677888777531          12356678999999999999999999999999999998776667888999999999


Q ss_pred             HHhccCC--c-hHHHHHHHH-------hChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          340 SVCKFSA--T-ARVLQEMLQ-------VGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       340 ~l~~~~~--~-~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      .+|..+.  + .+..-+++.       ..-+..++..|....+...+..+-.++.
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN  242 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  242 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            9998764  2 333333322       2347777777775444444444433333

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=90.88  E-value=19  Score=38.38  Aligned_cols=178  Identities=10%  Similarity=0.140  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC---------chhhhhc-h
Q 040073          156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD---------PFQLISV-K  225 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~~-~  225 (407)
                      .++..|+++|..++..-  ..+.+.  .  +++.++..|.+.+..++..|+.+|.+++...+         ....+.- .
T Consensus       473 ~vr~~a~~~lg~~~~~~--~~~~l~--~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (960)
T 1wa5_C          473 ILRVDAIKYIYTFRNQL--TKAQLI--E--LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (960)
T ss_dssp             HHHHHHHHHHHHTGGGS--CHHHHH--H--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             eehHHHHHHHHHHHhhC--CHHHHH--H--HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence            46899999999877532  122322  1  68888999988889999999999999986422         1222211 1


Q ss_pred             hhhHHHHHHHcccCCCCCHH--HHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhc----ccchhHHHHHHHHHHH
Q 040073          226 QEFFTEIVNVLRDHHQFSQQ--ASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLD----VTERRVCELMLNVLDL  298 (407)
Q Consensus       226 ~g~i~~Lv~lL~~~~~~~~~--~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~----~~~~~~~~~al~~L~~  298 (407)
                      ...+..|+.+++..++....  ....++.+|..++.. .+.-...+. ..++.|+..+..    ..++.....++.+|..
T Consensus       547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~  625 (960)
T 1wa5_C          547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (960)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            34666667777653000011  223455555554331 111111111 144555555533    2245566667777777


Q ss_pred             HhcC--HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073          299 LCRC--AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC  342 (407)
Q Consensus       299 L~~~--~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~  342 (407)
                      ++..  ++....+..  ..+|.+...|........+.+..++..+.
T Consensus       626 l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          626 ILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            7654  333334433  35677777665544556666777666554

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=90.52  E-value=0.35  Score=35.08  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             ccCccccccC-----cCceecC--CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLM-----RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~-----~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.|.||++-.     -+|.+.+  |+...||.|.+-=.++ |+..||.|+.++..
T Consensus        17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCktrYkr   70 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR   70 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred             CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence            4899998642     2355553  8999999999987765 59999999988753

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.49  E-value=4.6  Score=37.59  Aligned_cols=117  Identities=9%  Similarity=0.106  Sum_probs=83.6

Q ss_pred             HHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073          160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH  239 (407)
Q Consensus       160 ~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~  239 (407)
                      .+...|.. -.++.+..+=+...+|  +..+..+.+..+.+........|...+....-+. .-. ...+|.++..++-.
T Consensus       262 R~FDLL~L-LmHdSnAIDGFVk~DG--v~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L-~e~LPFi~~~i~~h  336 (619)
T 3c2g_A          262 RTFDLLGL-LLHDSDAIDGFVRSDG--VGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPL-ENILPFLLRLIEIH  336 (619)
T ss_dssp             HHHHHHHH-HCCSHHHHHHHHHTTH--HHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCC-TTHHHHHHHHHHHC
T ss_pred             HHHHHHHH-Hhcccccccceeeccc--ceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccc-cccchHHHHHhccC
Confidence            34444444 4455444444444553  8889999999999999999999998865433322 222 35789999888743


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcc
Q 040073          240 HQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDV  283 (407)
Q Consensus       240 ~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~  283 (407)
                        .++++.-.+.+.|.|...+.. -+...+..|+|+.|-..+...
T Consensus       337 --~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky  379 (619)
T 3c2g_A          337 --PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY  379 (619)
T ss_dssp             --CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             --CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence              289999999999999988765 555667899999999887653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.46  E-value=7.9  Score=41.19  Aligned_cols=175  Identities=13%  Similarity=0.112  Sum_probs=104.1

Q ss_pred             hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073          195 KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG  271 (407)
Q Consensus       195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G  271 (407)
                      .+.+...++.+..++..++.......     ...++.++..+.   ++   ++.++..++++|..++..-........ .
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~---~~~vr~~~~~~l~~~~~~l~~~~~~l~-~  529 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS---NVQLADTVMFTIGALSEWLADHPVMIN-S  529 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC---SHHHHHHHHHHHHHTHHHHHHCHHHHT-T
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhCHHHHH-H
Confidence            34577889999999999986543211     123455555442   34   678999999999988753111123333 5


Q ss_pred             chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHH----HHHHc--CCchhhHHHHHHHHHHhccC
Q 040073          272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVS----KKILR--VSHAASDRAVRILCSVCKFS  345 (407)
Q Consensus       272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv----~~l~~--~s~~~~e~a~~~L~~l~~~~  345 (407)
                      +++.|+..|.+   +.++..|+.+|..++..  .+..+..   .++.++    ..+.+  .+...++....++..+....
T Consensus       530 vl~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p---~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          530 VLPLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPP---YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             THHHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTT---THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHh---hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            78888888743   68899999999999852  2222221   234443    33333  24567888888888888654


Q ss_pred             CchHHHHHHHHhChHHHHHHHHh----cCCCHHHHHHHHHHHHHHHh
Q 040073          346 ATARVLQEMLQVGVVSKLCLVLQ----VDASVKTKERAREILKLNAR  388 (407)
Q Consensus       346 ~~~~~~~~~~~~g~i~~Ll~ll~----~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.+ .....+ ...++++...++    .+.++..+.....++..|..
T Consensus       602 ~~~-~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~  646 (963)
T 2x19_B          602 QVE-EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN  646 (963)
T ss_dssp             CHH-HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            311 222222 234555544443    22366666666666655543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.32  E-value=1.1  Score=37.15  Aligned_cols=79  Identities=13%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..+.+.|...++..+-.|+.+|-.+.++++. .+..++.+...+..|+.++.....+.+|+++..+++.-...+...|
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  131 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP  131 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence            345677777777888999999999999988765 4777777788899999988754678999999999988777655554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=89.63  E-value=13  Score=34.42  Aligned_cols=192  Identities=14%  Similarity=0.156  Sum_probs=126.5

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHhhhChhH----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073          102 KILNDAKKSP-STGRKCLRRLRSITLQSERN----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus       102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      .|+..|..=+ +.+..+......+.+.....    .+.+..  --+.|.-++...+.+ +.--.+=..|.....++. ..
T Consensus        82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~-diAl~~G~mLRecir~e~-la  157 (341)
T 1upk_A           82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESP-EIALNCGIMLRECIRHEP-LA  157 (341)
T ss_dssp             HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGST-TTHHHHHHHHHHHHTSHH-HH
T ss_pred             HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccc-hhHhHHHHHHHHHHHhHH-HH
Confidence            3444444444 66777776666666554322    223332  233333344333332 234455557777777665 44


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhh--chhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLIS--VKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      +++...+  .+..+....+.++-++...|..++..|...+..- ....  ....++...-.+|.++   +--.++.++..
T Consensus       158 ~~iL~~~--~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~---NYVTkRQSlKL  232 (341)
T 1upk_A          158 KIILWSE--QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE---NYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHSG--GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---SHHHHHHHHHH
T ss_pred             HHHhccH--HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC---cchhHHHHHHH
Confidence            5555554  5778889999999999999999999886543321 1111  1234666677889888   99999999999


Q ss_pred             HHHhCCCCchHHHHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          254 LVELCPWGRNRIKAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       254 L~~L~~~~~n~~~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      |..|-.+..|...|..    ..-+..++.+|++. +..++-+|..+......++
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence            9999998888777654    24677888888887 8899999999888765544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.95  E-value=18  Score=35.20  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ......++...+++...+.-|.+-|....++=|+..+.     +|..++.+.++.+.  .++.+|+..|-.+|.+ +   
T Consensus        28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck~-~---   96 (507)
T 3u0r_A           28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV--SIRRQAIKELPQFATG-E---   96 (507)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH--HHHHHHHHHGGGGCCT-T---
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--HHHHHHHHhhHHHhhh-h---
Confidence            44555666655665566777888888887776665554     46777888887665  4699999999999976 2   


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE  256 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~  256 (407)
                       .+.    ++...|+++|+..+.......-.+|..|...+.        .|.+..|..-+.++   +..+++..+..|..
T Consensus        97 -~i~----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~---~e~~Rer~lkFi~~  160 (507)
T 3u0r_A           97 -NLP----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG---EDIVRERAIKFLST  160 (507)
T ss_dssp             -CHH----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS---CHHHHHHHHHHHHH
T ss_pred             -hhh----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc---chHHHHHHHHHHHH
Confidence             132    257789999999888888888888888765432        24566666666666   78888888887764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=88.73  E-value=27  Score=37.08  Aligned_cols=215  Identities=13%  Similarity=0.032  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHH---h--cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHH
Q 040073          157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVL---K--CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTE  231 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL---~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~  231 (407)
                      .++.|+.++..++..-....     ..  .++.++.++   .  ..++.++..++++|..++..-.......  ..+++.
T Consensus       480 ~~eaal~~l~~iae~~~~~~-----~~--~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~  550 (971)
T 2x1g_F          480 KLEACIYSFQSVAEHFGGEE-----KR--QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINL  550 (971)
T ss_dssp             HHHHHHHHHHHTTTC-----------C--HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcChhh-----hH--HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHH
Confidence            48889889988876543211     11  345554444   2  2378899999999999875422221111  246777


Q ss_pred             HHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhccc-chhHHHHHHHHHHHHhcC--HhhH
Q 040073          232 IVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRC--AEGR  306 (407)
Q Consensus       232 Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~--~~~r  306 (407)
                      |+..|. .     .++..|+.+|.+++..  .+..+..  ...+..|.+++..+. +...+..++.++..++..  ++.+
T Consensus       551 l~~~l~-~-----~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~  622 (971)
T 2x1g_F          551 LVRGLN-S-----SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI  622 (971)
T ss_dssp             HHHHHH-S-----SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHhC-h-----HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence            777663 3     4688999999999852  2333332  234555556665531 456777778888777653  2444


Q ss_pred             HHHHhccCchHHHHHHHHcC------CchhhHHHHHHHHHHhcc---CCch-----------HHHHHHHHhChHHHHHHH
Q 040073          307 AELLKHGAGLAVVSKKILRV------SHAASDRAVRILCSVCKF---SATA-----------RVLQEMLQVGVVSKLCLV  366 (407)
Q Consensus       307 ~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~l~~~---~~~~-----------~~~~~~~~~g~i~~Ll~l  366 (407)
                      .....  ..++.++..+...      ++..+......+..++..   -...           .... -.....++.+..+
T Consensus       623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~  699 (971)
T 2x1g_F          623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRI  699 (971)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHH
Confidence            44333  2345555544321      222233333444443321   0000           0001 1123567777777


Q ss_pred             HhcC-CCHHHHHHHHHHHHHHHhhcc
Q 040073          367 LQVD-ASVKTKERAREILKLNARAWR  391 (407)
Q Consensus       367 l~~~-~~~~~k~~A~~lL~~l~~~~~  391 (407)
                      +... .++...+.|..+++.+...+.
T Consensus       700 l~~~~~~~~v~e~~~~~~~~~~~~~~  725 (971)
T 2x1g_F          700 AEMWVEEIDVLEAACSAMKHAITNLR  725 (971)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHhhh
Confidence            7543 367889999998888766543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.42  E-value=17  Score=34.36  Aligned_cols=179  Identities=15%  Similarity=0.124  Sum_probs=108.3

Q ss_pred             HHHHhcCCC-hH-HHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCC---------CCchHHHHHHHHHhcCC
Q 040073          103 ILNDAKKSP-ST-GRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDA---------GSDECDEALSILYHLNV  170 (407)
Q Consensus       103 ll~~L~~~~-~~-~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~---------~~~~~~~a~~~L~~L~~  170 (407)
                      .++.|.+.. .. -.+.+..|+...+.+ ......+. .+|+..|+.+|.....         ....+...+..|..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            345555443 21 123455555433332 34444554 6778888888864311         11236677788888887


Q ss_pred             ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhc---------hhhhHHHHHHHccc
Q 040073          171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISV---------KQEFFTEIVNVLRD  238 (407)
Q Consensus       171 ~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~---------~~g~i~~Lv~lL~~  238 (407)
                      +..+...++...+  ++..|+..|.+.++.++..+..+|..++..++  + ...+..         ...-+..||+.+.+
T Consensus        88 ~~~Gl~~vl~~~~--~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           88 NKFGIKTMLETEE--GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             SHHHHHHHHHSSS--HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             CHHHHHHHHcCcH--HHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            7777777777655  79999999988899999999999998887654  3 222211         01134557777765


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHhcCchHHHHHHhhcccchh
Q 040073          239 HHQFSQQASKAALKLLVELCPWGR-------NRIKAVEGGGVSVLVDLLLDVTERR  287 (407)
Q Consensus       239 ~~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~~~~~  287 (407)
                      .  .+.+.+.+.+..+-.|....+       -|..+...| +..+++.|....++.
T Consensus       166 ~--~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~  218 (386)
T 2bnx_A          166 G--TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENED  218 (386)
T ss_dssp             T--SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHH
T ss_pred             C--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChh
Confidence            4  266766666665555655444       245555667 555566666643433

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=88.35  E-value=4.2  Score=37.88  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=116.3

Q ss_pred             HHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhH
Q 040073          209 LKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRV  288 (407)
Q Consensus       209 L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~  288 (407)
                      |.+|..++.+...=++..+++..+-.+++-.   +.++.+++...|...+....-...-. ...+|-+++.+.-.++.++
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdv  341 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEV  341 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcce
Confidence            3445555555443333345688888888877   99999999999999876444222212 2468888888876557888


Q ss_pred             HHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCc-------hhhHHHHHHHHHHhcc--------C----C---
Q 040073          289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH-------AASDRAVRILCSVCKF--------S----A---  346 (407)
Q Consensus       289 ~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~-------~~~e~a~~~L~~l~~~--------~----~---  346 (407)
                      .-...+.|.+...+...-+++.-..++|+.|-+.+.++.+       ..+..|++++++.-+.        -    +   
T Consensus       342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~  421 (619)
T 3c2g_A          342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETK  421 (619)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCC
T ss_pred             EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccc
Confidence            8999999999988766544444336889999998887632       2355566655543211        0    0   


Q ss_pred             --chHHHHHHH---HhChHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 040073          347 --TARVLQEML---QVGVVSKLCLVLQVDA--SVKTKERAREILKLNARAWRDSPCVPAHL  400 (407)
Q Consensus       347 --~~~~~~~~~---~~g~i~~Ll~ll~~~~--~~~~k~~A~~lL~~l~~~~~~~~~~~~~~  400 (407)
                        .+.-.+++.   +-..+.+|+..|.-++  .+-.-+--..+|+.+-- ..++|.+|.+.
T Consensus       422 ~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~L-vlRTP~~Pkd~  481 (619)
T 3c2g_A          422 TAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFIL-LLRTPFVPKDG  481 (619)
T ss_dssp             CCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHH-HHTCTTSCCTT
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHH-HhcCCCCchhh
Confidence              011123333   3467778888886543  34444444445654433 23677777665

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=88.24  E-value=0.12  Score=35.25  Aligned_cols=38  Identities=8%  Similarity=0.257  Sum_probs=27.5

Q ss_pred             CCCCccccccccccCCCCC-CccHHH-HHHHHHHHHhccCCC
Q 040073           45 NNTCPVTKQVLQETDLTST-TPNHTL-RRLIQAWCTINACHG   84 (407)
Q Consensus        45 ~~~cP~~~~~~~~~~~~~l-~~n~~l-~~~I~~~~~~~~~~~   84 (407)
                      ++.||+|++.+.+ ++ .. ...+++ |+.|+.|...++.+.
T Consensus         3 ~~~CpIs~~~m~d-PV-~~~~sG~~yer~~I~~~l~~~~~cP   42 (61)
T 2bay_A            3 HMLCAISGKVPRR-PV-LSPKSRTIFEKSLLEQYVKDTGNDP   42 (61)
T ss_dssp             -CCCTTTCSCCSS-EE-EETTTTEEEEHHHHHHHHHHHSBCT
T ss_pred             eEEecCCCCCCCC-CE-EeCCCCcEEcHHHHHHHHHhCCCCc
Confidence            5789999999987 53 33 234555 899999999887543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=87.52  E-value=1.2  Score=39.02  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..|.+.|...++..+-.|+.+|-.+..+.+. .+..++.+...+..|..++.....+.+|+++.++++.........|
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  124 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP  124 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            355677777777889999999999999887665 3677777778888888888776788999999999988777655443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.82  E-value=5.7  Score=38.61  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH
Q 040073          196 CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV  275 (407)
Q Consensus       196 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~  275 (407)
                      .|+...+..|+..|......=+.   .  ...+|..++++..++   +..++..|.+.|..+|.. ++..+     ++..
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~---l--~~~Ai~a~lDLcEDe---d~~IR~qaik~Lp~~ck~-~~i~k-----iaDv  104 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPE---L--ADSAINAQLDLCEDE---DVSIRRQAIKELPQFATG-ENLPR-----VADI  104 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGG---G--HHHHHHHHHHHHTCS---SHHHHHHHHHHGGGGCCT-TCHHH-----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChh---h--HHHHHHHHHHHHhcc---cHHHHHHHHHhhHHHhhh-hhhhh-----HHHH
Confidence            47889999999999877544332   1  135789999999998   999999999999999987 55444     4678


Q ss_pred             HHHHhhcc
Q 040073          276 LVDLLLDV  283 (407)
Q Consensus       276 Lv~lL~~~  283 (407)
                      |+++|...
T Consensus       105 L~QlLqtd  112 (507)
T 3u0r_A          105 LTQLLQTD  112 (507)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHhcc
Confidence            89999875

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=86.19  E-value=1.7  Score=37.89  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      +..|.+.|...++..+-.|+.+|-.+..+.+. .+..++.+...+..|+.++.......+|+++.++++.-.......|
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  121 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD  121 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence            45667777777888999999999999887654 4667777778888888888776678999999999988777655544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=86.15  E-value=1.3  Score=44.10  Aligned_cols=153  Identities=16%  Similarity=0.112  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHH
Q 040073          199 YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD  278 (407)
Q Consensus       199 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~  278 (407)
                      ..+|+.++.+|..+ .+-+..      ..++..|+..+...   .-+++..++-.|..+.   +--..  =.++++.++.
T Consensus       242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~---~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~  306 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG---DWQVQFSGLIALGYLK---EFVED--KDGLCRKLVS  306 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS---CHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHH
T ss_pred             eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC---CeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHh
Confidence            45899999999998 543332      23566666666666   8999999999999991   11000  1356788888


Q ss_pred             HhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHH----HHcCC--chhhHHHHHHHHHHhccCCchHHHH
Q 040073          279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKK----ILRVS--HAASDRAVRILCSVCKFSATARVLQ  352 (407)
Q Consensus       279 lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~----l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~  352 (407)
                      -|.+. +.+++..|+.+|.-++ .+          ..++.++..    |.+.+  ..........|..+|....+.    
T Consensus       307 GL~D~-DDDVRAVAAetLiPIA-~p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----  370 (800)
T 3oc3_A          307 LLSSP-DEDIKLLSAELLCHFP-IT----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----  370 (800)
T ss_dssp             HTTCS-SHHHHHHHHHHHTTSC-CS----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC----
T ss_pred             hcCCc-ccHHHHHHHHHhhhhc-ch----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc----
Confidence            88876 8899999999999888 22          234444443    33332  234566677888888876431    


Q ss_pred             HHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          353 EMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       353 ~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                       ......+|.|--+++ +....+|+.+..+|.
T Consensus       371 -~~dp~LVPRL~PFLR-HtITSVR~AVL~TL~  400 (800)
T 3oc3_A          371 -SIPPERLKDIFPCFT-SPVPEVRTSILNMVK  400 (800)
T ss_dssp             -CCCSGGGGGTGGGGT-CSSHHHHHHHHHHTT
T ss_pred             -ccChHHHHHHHhhhc-CCcHHHHHHHHHHHH
Confidence             112367888888888 557888887665543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.47  E-value=2.3  Score=34.52  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++..     ...+.+|++...+++.-...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            355777778777899999999999999988775 377788888899999998863     25789999999999887776


Q ss_pred             ccCC
Q 040073          390 WRDS  393 (407)
Q Consensus       390 ~~~~  393 (407)
                      +...
T Consensus       128 f~~~  131 (149)
T 3g2s_A          128 LPEE  131 (149)
T ss_dssp             CTTC
T ss_pred             hCCC
Confidence            5443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=85.23  E-value=5.4  Score=37.86  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             CchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073          271 GGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS  340 (407)
Q Consensus       271 G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~  340 (407)
                      ||+..|+..|..-          .+......++.+|..|..+..|...+..+..++..++..|....+..+..++.+|..
T Consensus        47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~a  126 (386)
T 2bnx_A           47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  126 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            4566666665431          023556789999999999999999999999889888887655567788889999999


Q ss_pred             HhccCC--c-hHHHHHHHH-------hChHHHHHHHHhcCCCHHHHHHH
Q 040073          341 VCKFSA--T-ARVLQEMLQ-------VGVVSKLCLVLQVDASVKTKERA  379 (407)
Q Consensus       341 l~~~~~--~-~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~k~~A  379 (407)
                      +|..+.  . ....-+++.       ..-+..|+..+..+.+...+..+
T Consensus       127 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~  175 (386)
T 2bnx_A          127 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC  175 (386)
T ss_dssp             HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH
T ss_pred             HHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHH
Confidence            998764  2 222222221       23455677766544444444333

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.96  E-value=2.8  Score=33.60  Aligned_cols=78  Identities=13%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..+.+.|...++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.. ..+.+|++...+++.....+...|
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~  120 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP  120 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC
Confidence            355677777777788899999999888887765 366677777788888888864 588999999999988777666554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.84  E-value=2.1  Score=34.75  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++..     .....+|+++..+++.-...
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            356777778777899999999999999988765 477788888899999888763     24789999999999877766


Q ss_pred             ccCCC
Q 040073          390 WRDSP  394 (407)
Q Consensus       390 ~~~~~  394 (407)
                      ....|
T Consensus       118 f~~~p  122 (148)
T 1mhq_A          118 FPEDI  122 (148)
T ss_dssp             CTTCH
T ss_pred             cCCCc
Confidence            54433

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=83.67  E-value=2.3  Score=35.49  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..|.+.|.+.++..+-.|+.+|-.+.++++. .+..++.+...+..|+.++..     .....+|+++..+++.-...
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355677777777889999999999999987654 477788888899999998862     23689999999999877665


Q ss_pred             cc
Q 040073          390 WR  391 (407)
Q Consensus       390 ~~  391 (407)
                      ..
T Consensus       130 f~  131 (171)
T 1juq_A          130 LP  131 (171)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=83.29  E-value=0.26  Score=29.14  Aligned_cols=15  Identities=20%  Similarity=0.614  Sum_probs=11.8

Q ss_pred             cccCccccccCcCce
Q 040073            9 HFLCPISLQLMRDPV   23 (407)
Q Consensus         9 ~~~Cpi~~~~~~dPv   23 (407)
                      -|.||+|+.-+..|-
T Consensus         5 GFiCP~C~~~l~s~~   19 (34)
T 3mjh_B            5 GFICPQCMKSLGSAD   19 (34)
T ss_dssp             EEECTTTCCEESSHH
T ss_pred             ccCCcHHHHHcCCHH
Confidence            489999998777763

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=82.01  E-value=6  Score=42.75  Aligned_cols=144  Identities=7%  Similarity=0.075  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHhcCCChhH--HHhHhhccchhhHHHHHHHHhc-----CChhHHHHHHHHHHHhhccCCchhhhhchhhhH
Q 040073          157 ECDEALSILYHLNVSESY--LKSIVINNGEEFLESLMRVLKC-----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF  229 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~--~~~~i~~~gg~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i  229 (407)
                      .+|.++++++.++.+-..  .+.++..    +++.|+.++.+     ....++..++++|+..+.--.......  ..++
T Consensus       469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~----vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          469 NINTLSWAIGSISGTMSEDTEKRFVVT----VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             HHHHHHHHHHHTTTSSCHHHHHHHHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHH----HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            488999999998765422  2344432    78889998864     223344556677776554221112221  2355


Q ss_pred             HHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh------cCchHHHHHHhhcc---cchhHHHHHHHHHHHHh
Q 040073          230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE------GGGVSVLVDLLLDV---TERRVCELMLNVLDLLC  300 (407)
Q Consensus       230 ~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~------~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~L~  300 (407)
                      ..|++.+.+.   ++.++.+|++++.+||.  +.+..++.      .-.++.+++.+..-   -+......+..++..+.
T Consensus       543 ~~L~~~l~~~---~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          543 LKLFEFMHET---HEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHTTCS---CHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcC---CHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            6666666665   78999999999999996  23334432      12345554433331   13444456666666665


Q ss_pred             cC---HhhHHHHHh
Q 040073          301 RC---AEGRAELLK  311 (407)
Q Consensus       301 ~~---~~~r~~i~~  311 (407)
                      ..   ...+...+.
T Consensus       618 ~~~~~~~~~~~~l~  631 (1023)
T 4hat_C          618 SEERSVAERNRLLS  631 (1023)
T ss_dssp             TTCCSHHHHHHHHH
T ss_pred             HhCCCHhhHHHHHH
Confidence            53   233444444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=81.75  E-value=29  Score=36.76  Aligned_cols=155  Identities=13%  Similarity=0.052  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccC-CCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSD-AGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL  190 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L  190 (407)
                      ..+..++..+..++......     ....++.++..|..-. +...++..+++++..++..-....+.+.  .  +++.|
T Consensus       464 ~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~--vl~~l  534 (963)
T 2x19_B          464 QHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN--S--VLPLV  534 (963)
T ss_dssp             HHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT--T--THHHH
T ss_pred             HHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH--H--HHHHH
Confidence            55667777888777552210     1223455555553322 2234688888899887643222223332  2  78888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC--chHHHH
Q 040073          191 MRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG--RNRIKA  267 (407)
Q Consensus       191 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~~  267 (407)
                      +..|.+  +.++..|+.++..++....  ..+.- ....+..|..++..+ ..+.+.+.....++..+...-  +.....
T Consensus       535 ~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          535 LHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            888854  7899999999999985432  11211 124555566666642 135788888889998887633  333333


Q ss_pred             HhcCchHHHHHHhh
Q 040073          268 VEGGGVSVLVDLLL  281 (407)
Q Consensus       268 v~~G~v~~Lv~lL~  281 (407)
                      ++ ..++++.+.+.
T Consensus       610 ~~-~l~~~l~~~l~  622 (963)
T 2x19_B          610 LH-SLISPYIQQLE  622 (963)
T ss_dssp             HH-HHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHH
Confidence            33 34555555543

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=80.88  E-value=5.1  Score=32.77  Aligned_cols=79  Identities=19%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             chHHHHHHHHc-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHH-HHHHHhc--CCCHHHHHHHHHHHHHHHhhc
Q 040073          315 GLAVVSKKILR-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSK-LCLVLQV--DASVKTKERAREILKLNARAW  390 (407)
Q Consensus       315 ~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~-Ll~ll~~--~~~~~~k~~A~~lL~~l~~~~  390 (407)
                      ++..+.+.|.+ .++..+-.|+.+|-.+.++++. .+..++.+...+.. |+.++..  +....+|+++..+++.-....
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f  132 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF  132 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence            34566777753 5678889999999999988765 47777777788888 7888742  234689999999998877766


Q ss_pred             cCCC
Q 040073          391 RDSP  394 (407)
Q Consensus       391 ~~~~  394 (407)
                      +..|
T Consensus       133 ~~~p  136 (157)
T 1elk_A          133 RSSP  136 (157)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            6554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=80.59  E-value=68  Score=34.66  Aligned_cols=103  Identities=14%  Similarity=0.005  Sum_probs=60.2

Q ss_pred             hHHHHHHHHhc----CChhHHHHHHHHHHHhhc----cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          186 FLESLMRVLKC----GNYQSRSYAIMLLKSIFE----VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       186 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                      .+..+..++.+    .++.+++.+..++..|..    ....+..-.. .-+...|.+.+..+   +.+-+..++++|.|+
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~---~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA---KEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC---ChHHHHHHHHHhhcc
Confidence            45555566654    456666666666666643    2222111001 12334444555566   788889999999999


Q ss_pred             CCCCchHHHHHhcCchHHHHHHhhc-----c-cchhHHHHHHHHHHHHhcC
Q 040073          258 CPWGRNRIKAVEGGGVSVLVDLLLD-----V-TERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       258 ~~~~~n~~~~v~~G~v~~Lv~lL~~-----~-~~~~~~~~al~~L~~L~~~  302 (407)
                      ...          +.++.|...+..     . ....++..|+.+|..++..
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~  508 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR  508 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence            752          246666666642     1 1235667888888888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-17
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-13
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-10
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	8e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	6e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 73.2 bits (179), Expect = 5e-17
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 7/82 (8%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          E P +F CPISL+LM+DPV VSTG TY+R +I++WL    + TCP +++ L    L   T
Sbjct: 4  EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGL---T 59

Query: 65 PNHTLRRLIQAWCTINACHGIE 86
          PN+ L+ LI  WC     +GIE
Sbjct: 60 PNYVLKSLIALWC---ESNGIE 78

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (153), Expect = 2e-13
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT 64
          ++P +    IS +LMR+P    +GITYDR +IE        +  PVT+  L +       
Sbjct: 3  DIPDYLCGKISFELMREPCITPSGITYDRKDIEEH-LQRVGHFNPVTRSPLTQEQ---LI 58

Query: 65 PNHTLRRLIQAWCTIN 80
          PN  ++ +I A+ + N
Sbjct: 59 PNLAMKEVIDAFISEN 74

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTST 63
          +    FL PI   LM DPV + +  +T DR  I R L +    T P  +  L        
Sbjct: 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLTMDQ---I 72

Query: 64 TPNHTLRRLIQAWC 77
           PN  L+  IQ W 
Sbjct: 73 RPNTELKEKIQRWL 86

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 8e-10
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNN-TCPVTKQVLQETDLTST 63
           +     CPI L+L+++PV+      + +  + + L   K    CP+ K  + +  L   
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL--- 73

Query: 64 TPNHTLRRLIQ 74
            +    +L++
Sbjct: 74 QESTRFSQLVE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65
          LC I  +  +D      G       +  W  + +   CP  +  ++ T+     P
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVVDP 78

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 5  EVPAHFL----CPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL 60
          + PAHF+    C I   ++ DPV  S    + R+ I R L     + CP  +     TDL
Sbjct: 15 DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCL-KVMGSYCPSCRYPCFPTDL 73

Query: 61 TSTTPNHTLRRLIQA 75
           S  P  +   ++ +
Sbjct: 74 ES--PVKSFLNILNS 86

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 LCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66
          LC IS ++ R PV    +   +++  +E++         P+T + L   ++    P+
Sbjct: 2  LCAISGKVPRRPVLSPKSRTIFEKSLLEQY--VKDTGNDPITNEPLSIEEIVEIVPS 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.9
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.9
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.62
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.61
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.56
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.25
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.17
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.14
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.0
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.98
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.75
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.62
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.57
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.52
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.47
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.43
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.32
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.1
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.93
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.84
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.77
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.71
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.68
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.64
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.53
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.45
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.41
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.37
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.12
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.02
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.01
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	92.8
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.79
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.93
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.79
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	90.48
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.26
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	89.75
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	88.49
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.09
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	81.9
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	80.51

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.4e-23  Score=199.44  Aligned_cols=284  Identities=13%  Similarity=0.162  Sum_probs=234.5

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.|++.|++. + +.|..|++.|.+++..+++.+..+++.|+++.|+.+|.+++.  .+++.|+++|.+++.+++.
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~--~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCH--HHHHHHHHHHHHHhccchH
Confidence            46688999999654 3 678899999999999888999999999999999999987765  5699999999999877655


Q ss_pred             HHhHhhccch---------------------------------------------hhHHHHHHHHhcCChhHHHHHHHHH
Q 040073          175 LKSIVINNGE---------------------------------------------EFLESLMRVLKCGNYQSRSYAIMLL  209 (407)
Q Consensus       175 ~~~~i~~~gg---------------------------------------------~~i~~Lv~lL~~~~~~~~~~a~~~L  209 (407)
                      .+..+.+.|+                                             +.++.|+.++.+++.+++..++++|
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhh
Confidence            4544444332                                             2456677777788888999999999


Q ss_pred             HHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhH
Q 040073          210 KSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRV  288 (407)
Q Consensus       210 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~  288 (407)
                      .+++..++.........|+++.|+.+++++   +.+++..++.+|.+++... ..+..+++.|+++.|+.+|.+. +.++
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~---~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v  288 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI  288 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccc---hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhh
Confidence            999877665655555678999999999998   9999999999999999855 4677888999999999999886 7889


Q ss_pred             HHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHH
Q 040073          289 CELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVL  367 (407)
Q Consensus       289 ~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll  367 (407)
                      ++.++++|.+++.+.. .+..+.+ .|+++.++..+.+.+...+..|+.+|.+++.+... +....+++.|+++.|+.++
T Consensus       289 ~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~l~~~~~i~~L~~ll  366 (434)
T d1q1sc_         289 QKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLL  366 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHHT
T ss_pred             hHHHHHHHhhhccccchhHHHHhh-hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHh
Confidence            9999999999998554 4555555 67999999988888899999999999999987543 4567788999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHhh
Q 040073          368 QVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       368 ~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +++ +++.+..+...|..|-++
T Consensus       367 ~~~-d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         367 SAK-DTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             TSS-CHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHHHHH
Confidence            865 788888888877666543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-23  Score=208.95  Aligned_cols=277  Identities=13%  Similarity=0.153  Sum_probs=234.9

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      ...||.|++.|++.+ ..+..|+..|..++.. +..|..+.. .|+++.|+++|.+..+. ..++.|+.+|.+++.+++.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~-~~~~~a~~~L~~l~~~~~~   93 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhCCchh
Confidence            456899999998877 8899999999999976 555666555 67899999999876653 3599999999999987764


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                       +..+.+.|  +++.|+.+|++++.+++..|+++|.+|+...+..+..+...|+|+.|+.+|+++   +++++..++.+|
T Consensus        94 -~~~i~~~g--~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L  167 (529)
T d1jdha_          94 -LLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCL  167 (529)
T ss_dssp             -HHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHH
T ss_pred             -HHHHHHCC--CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc---ChHHHHHHHHHH
Confidence             45566666  699999999999999999999999999988887777666679999999999998   999999999999


Q ss_pred             HHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          255 VELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       255 ~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      .+|+..+ .++..+.+.|+++.|+.+|.......++..++.+|.+++.+++++..+++ .|+++.|+.++...+...+++
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~  246 (529)
T d1jdha_         168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhh-hhhhhhHHHHhcccchhhhhh
Confidence            9999754 57777889999999999998765678889999999999999999998888 589999999887778889999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ++.+|.+++.....     .....|+++.|+.++.+ +++..++.|..+|..|..
T Consensus       247 a~~~l~~ls~~~~~-----~~~~~~~i~~Lv~ll~~-~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         247 CLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HHHHHHHHHTTCTT-----CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHhccccccc-----hhhhhhcchhhhhhccc-ccHHHHHHHHHHHHhhcc
Confidence            99999999865433     22235899999999985 488899999999988753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-23  Score=208.12  Aligned_cols=279  Identities=17%  Similarity=0.098  Sum_probs=236.3

Q ss_pred             hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.++.++..|..+ + +.+..|+..|..++.+ ++++..+++.|++|.|+.+|.+++.  .++..|+++|.+++.+.+.
T Consensus        58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Li~lL~~~~~--~v~~~a~~aL~~l~~~~~~  134 (529)
T d1jdha_          58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHCCCHHHHHHHhCCCCH--HHHHHHHHHHHHhhcccch
Confidence            45578888888654 4 7888999999999864 8899999999999999999988765  5699999999999988777


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL  254 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL  254 (407)
                      .+..+.+.|  +++.|+.+|++++.+++..++.+|.+++..++..+......|++++|+.+++..  .+...+..++.+|
T Consensus       135 ~~~~~~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~~~~~l  210 (529)
T d1jdha_         135 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVL  210 (529)
T ss_dssp             HHHHHHHHT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             hhhHHHhcC--CchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh--hhHHHHHHHHHHH
Confidence            777787776  699999999999999999999999999877666655666678899999999876  2678999999999


Q ss_pred             HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073          255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA  334 (407)
Q Consensus       255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a  334 (407)
                      .+++.+++++..+++.|+++.|+.++.+. +..++..++++|.+++.....+  ... .|+++.|++++...+...++.|
T Consensus       211 ~~ls~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~l~~ls~~~~~~--~~~-~~~i~~Lv~ll~~~~~~~~~~a  286 (529)
T d1jdha_         211 KVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhhccccccchhhhhhhhhhHHHHhccc-chhhhhhhhhHHHhccccccch--hhh-hhcchhhhhhcccccHHHHHHH
Confidence            99999999999999999999999999886 7889999999999998654432  222 4689999998777778899999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 040073          335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-DASVKTKERAREILKLNAR  388 (407)
Q Consensus       335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.+|++++..  +.+.+..+.+.|+++.|+.++.. ...+..++.|..+|+.+..
T Consensus       287 ~~~L~~l~~~--~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         287 AGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhccc--hhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            9999999974  34467778899999999998854 3467888999999988753

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.5e-22  Score=197.41  Aligned_cols=283  Identities=11%  Similarity=0.104  Sum_probs=240.7

Q ss_pred             ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      +.+.++.|+..++.+.  ..+..|++.|.+++..++.....+.+.|+++.|+.+|.+.+.  .+++.|+++|.+++..+.
T Consensus       117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~--~i~~~a~~~L~nia~~~~  194 (503)
T d1wa5b_         117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--EVKEQAIWALGNVAGDST  194 (503)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--HHHHHHHHHHHHHHTTCH
T ss_pred             HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCCh--hHHHHHHHHHHHHhhhhH
Confidence            3567889999887543  678899999999998888888999999999999999998765  569999999999998777


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      ..+..+...|  +++.|+.++.+.+...+..++++|.+++...+.........|+++.|+.++.+.   +++.+..++++
T Consensus       195 ~~r~~l~~~~--~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~---d~~~~~~~~~~  269 (503)
T d1wa5b_         195 DYRDYVLQCN--AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWA  269 (503)
T ss_dssp             HHHHHHHHTT--CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred             HHHHHHHhhc--ccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc---cHHHHHHHHHH
Confidence            7788887776  699999999999999999999999999976654443433457899999999988   99999999999


Q ss_pred             HHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073          254 LVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASD  332 (407)
Q Consensus       254 L~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e  332 (407)
                      |.+|+.... ....+++.|+++.|+.++.++ +..+...++.+|.+++.+.+.....+...|+++.+..++...++..++
T Consensus       270 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~  348 (503)
T d1wa5b_         270 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK  348 (503)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred             HHhhccCCchhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHH
Confidence            999998655 456788999999999999987 789999999999999987665555544468899999977766788899


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .++.+|.+++.++  ......+++.|+++.++.++..+ +.+++..|.++|..+...
T Consensus       349 ~~~~~l~nl~~~~--~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         349 EACWTISNITAGN--TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc--HHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhc
Confidence            9999999999754  34677888999999999999864 889999999999888764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.3e-24  Score=160.23  Aligned_cols=75  Identities=48%  Similarity=0.896  Sum_probs=69.5

Q ss_pred             CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      ..++|++|.||||+++|+|||+++|||+|||.||++|+..+ ...||.|+.+++..   ++.||+.||++|+.|+++|+
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~-~~~cP~~~~~l~~~---~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQETLLHA---GLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCCBCSSC---CCEECTTTHHHHHHHHHHSC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC-CCCCCcccccCCcc---cccchHHHHHHHHHHHHHhC
Confidence            35799999999999999999999999999999999999763 67899999999874   89999999999999999987

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.8e-24  Score=160.26  Aligned_cols=74  Identities=34%  Similarity=0.572  Sum_probs=69.1

Q ss_pred             CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      .++|++|.||||+++|+|||+++|||||||.||.+|+..+ +.+||.|+++++.+   ++.||..|+++|++|+.+|+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~-~~~cP~c~~~l~~~---~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQE---QLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGG---GCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC-CccCCCcccccccc---ccccHHHHHHHHHHHHHHCC
Confidence            4799999999999999999999999999999999999874 67899999999875   89999999999999999887

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8.8e-22  Score=191.28  Aligned_cols=285  Identities=13%  Similarity=0.112  Sum_probs=233.3

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .+.|..+++.+.+++ +.+..|+..|+++...+. ...+.+++.|++|.|+++|.+.+.. .++..|+++|.+++..+.+
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~v~~~a~~~L~~la~~~~~   90 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS-PIQFESAWALTNIASGTSE   90 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGH-HHHHHHHHHHHHHHTSCHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCH-HHHHHHHHHHHHHhcCChh
Confidence            466899999999988 999999999999865422 2357889999999999999765442 4688999999999877666


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC--CCHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ--FSQQASKAALK  252 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~~A~~  252 (407)
                      .+..+.+.|  +++.|+.+|.+++.++++.|+++|.+++...+..+......|+++.|+.++.....  ........+++
T Consensus        91 ~~~~i~~~~--~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  168 (434)
T d1q1sc_          91 QTKAVVDGG--AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  168 (434)
T ss_dssp             HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred             hhhHhhhcc--chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence            677777776  79999999999999999999999999997766655555556889999999976410  13466778889


Q ss_pred             HHHHhCCCCch-HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073          253 LLVELCPWGRN-RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS  331 (407)
Q Consensus       253 aL~~L~~~~~n-~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~  331 (407)
                      ++.+++..... .......++++.|+.++.+. +.+++..++++|.+|+.++..+.......|+++.+++++.+.+...+
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~  247 (434)
T d1q1sc_         169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  247 (434)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhh
Confidence            99999986543 33345567899999999886 78999999999999998776666666557899999998887788999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          332 DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       332 e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ..++.+|.+++.+  ++.....+++.|+++.|+.+|++ .++..++.|..+|..+..
T Consensus       248 ~~al~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         248 TPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITA  301 (434)
T ss_dssp             HHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred             hchhhhhhhHHhh--hhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhcc
Confidence            9999999999974  34467888899999999999985 588899999999988865

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-21  Score=187.58  Aligned_cols=281  Identities=12%  Similarity=0.086  Sum_probs=224.8

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS  177 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  177 (407)
                      .||.|++.|.+++ +.|..|+..|.+++.+++++|..+++.|+||.|+++|++++.  .+++.|+++|.+|+.++++++.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--NVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHH
Confidence            3789999999888 999999999999999889999999999999999999987665  5799999999999987777788


Q ss_pred             HhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchh------------------------------------
Q 040073          178 IVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQ------------------------------------  220 (407)
Q Consensus       178 ~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~------------------------------------  220 (407)
                      .+.+.|  +++.|+.++.+ .+.+++..|+.+|.+++.......                                    
T Consensus        81 ~i~~~g--~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQN--GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTT--CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCC--ChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            888777  59999998865 577888888888888876432211                                    


Q ss_pred             --------------------hhhchhhhHHHHHHHcccC-----------------------------------------
Q 040073          221 --------------------LISVKQEFFTEIVNVLRDH-----------------------------------------  239 (407)
Q Consensus       221 --------------------~i~~~~g~i~~Lv~lL~~~-----------------------------------------  239 (407)
                                          ......|+++.|+.++++.                                         
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence                                1112245667776654210                                         


Q ss_pred             -------------------------------------------------------CCCCHHHHHHHHHHHHHhCCCCc--
Q 040073          240 -------------------------------------------------------HQFSQQASKAALKLLVELCPWGR--  262 (407)
Q Consensus       240 -------------------------------------------------------~~~~~~~~~~A~~aL~~L~~~~~--  262 (407)
                                                                             ...+++.+..+..++.+++....  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                                   00134566777888888887543  


Q ss_pred             ----hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC------CchhhH
Q 040073          263 ----NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV------SHAASD  332 (407)
Q Consensus       263 ----n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~------s~~~~e  332 (407)
                          .+..+.+.|+++.|+++|.+. +..++..++.+|.+|+.+++++..+..  ++++.++.++...      ++..++
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHH
Confidence                345556789999999999886 789999999999999999999888765  5799999977543      135788


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .|+.+|.+++..+.+  .++.+++.|++++|+.++++..++..++.|+.+|..|..
T Consensus       396 ~a~~~L~~l~~~~~~--~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         396 SACYTVRNLMASQPQ--LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHTTCTH--HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhcCCHH--HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            899999999976543  688888999999999999987789999999999998744

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.9e-21  Score=191.13  Aligned_cols=280  Identities=10%  Similarity=0.088  Sum_probs=233.3

Q ss_pred             hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073           97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus        97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      .+.++.++..|.+++ +.+..|++.|.+++.+++.+|..+.+.|+++.|+.++.+...  .++..++++|.+++.+....
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCH--HHHHHHHHHHHHHhcCCccc
Confidence            456778888888777 889999999999999999999999999999999999987665  45889999999999766444


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                      .......+  +++.|+.++.+++.+.+..++++|.+++...+.........|+++.|+.++.++   +..++..|+.+|.
T Consensus       239 ~~~~~~~~--~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~l~  313 (503)
T d1wa5b_         239 PDWSVVSQ--ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---STLVQTPALRAVG  313 (503)
T ss_dssp             CCHHHHGG--GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC---chhhhhhHHHHHH
Confidence            44433344  799999999999999999999999999976665544445568999999999998   9999999999999


Q ss_pred             HhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073          256 ELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAASDR  333 (407)
Q Consensus       256 ~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~  333 (407)
                      +++...+ ....+++.|+++.|..++.+. +..++..++++|.+++.+. +....+.+ .++++.++..+.+.+...+..
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~-~~~l~~li~~l~~~~~~v~~~  391 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVID-ANLIPPLVKLLEVAEYKTKKE  391 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHH-ccccchhHHhcccCChhHHHH
Confidence            9998655 455667899999999999886 7899999999999998854 45556665 689999999998888899999


Q ss_pred             HHHHHHHHhccCCc-hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073          334 AVRILCSVCKFSAT-ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN  386 (407)
Q Consensus       334 a~~~L~~l~~~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l  386 (407)
                      |+.+|.+++....+ .+....+++.|+++.|+.+|+.. +......+-..|..+
T Consensus       392 a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~-d~~~~~~~L~~l~~l  444 (503)
T d1wa5b_         392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENI  444 (503)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            99999999986543 34677888999999999999864 677777776665544

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-22  Score=155.48  Aligned_cols=73  Identities=33%  Similarity=0.526  Sum_probs=67.0

Q ss_pred             CCCCCcccCccccccCcCceecCCc-ccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073            4 IEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA   81 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dPv~~~~g-~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~   81 (407)
                      .++|++|.||||+++|+|||+++|| |||||.||.+|+..  +.+||.|++++..+   +++||+.||+.|+.|+.++.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~--~~~~P~~~~~l~~~---~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMD---QIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTT---TSEECHHHHHHHHHHHHHST
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh--cCCcccccccccch---hhcchHHHHHHHHHHHHHHH
Confidence            4799999999999999999999866 69999999999975  66899999999875   89999999999999999876

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.9e-18  Score=155.39  Aligned_cols=201  Identities=16%  Similarity=0.144  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHH-HhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073          112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLAT-IITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL  190 (407)
Q Consensus       112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L  190 (407)
                      +.+..|+..|..++.+ .+++..+...|+++.|+. +|.+++.  .++..|+++|.+++.+++..+..+.+.|  +++.|
T Consensus        32 ~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~--~vr~~A~~~L~~l~~~~~~~~~~~~~~~--~i~~L  106 (264)
T d1xqra1          32 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLG--ALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHH
T ss_pred             HHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC--chHHH
Confidence            7788999999999964 789999999999999986 5665544  5699999999999998877777777776  69999


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHH
Q 040073          191 MRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAV  268 (407)
Q Consensus       191 v~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v  268 (407)
                      +.+|.+ .+..++..++.+|.+++...+.....+...|+++.|+.+++++   +.+++..++++|.+|+. .++++..++
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~  183 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLC  183 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC---chHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999975 5788999999999999987776666655678899999999998   99999999999999987 567899999


Q ss_pred             hcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHH
Q 040073          269 EGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSK  321 (407)
Q Consensus       269 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~  321 (407)
                      +.|+++.|+++|.+. +.++++.|+.+|.+|+.. +..+..+.....+...++.
T Consensus       184 ~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~  236 (264)
T d1xqra1         184 SMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR  236 (264)
T ss_dssp             HTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHH
T ss_pred             HhhhHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHH
Confidence            999999999999886 899999999999999984 4445555443333444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-17  Score=151.86  Aligned_cols=192  Identities=15%  Similarity=0.092  Sum_probs=158.9

Q ss_pred             chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073          156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN  234 (407)
Q Consensus       156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~  234 (407)
                      ..++.|+.+|.+|+.+.+ ++..+...||  ++.++ .+|++++.++|..|+.+|.+++.+.+..+......|+++.|+.
T Consensus        32 ~~~~~Al~~L~~L~~~~d-~a~~l~~~gg--~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          32 QEREGALELLADLCENMD-NAADFCQLSG--MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHH-HHHHHHHTTH--HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHH-HHHHHHHcCC--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            358889999999997665 4455556674  77766 5788899999999999999999877666655555789999999


Q ss_pred             HcccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhc
Q 040073          235 VLRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKH  312 (407)
Q Consensus       235 lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~  312 (407)
                      +|.++  .+++++..++++|.+|+.+. .++..+.+.|+++.|+.+|.+. +..++..++.+|.+++. +++.+..+.. 
T Consensus       109 lL~~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-  184 (264)
T d1xqra1         109 LLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-  184 (264)
T ss_dssp             HHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred             HhhcC--CCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence            99765  37899999999999999854 5788889999999999999987 88999999999999886 5677877777 


Q ss_pred             cCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH
Q 040073          313 GAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ  356 (407)
Q Consensus       313 ~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~  356 (407)
                      .|++|.|+.++.+.++..++.|+.+|++|+..+++  ....+..
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~--~~~~~~~  226 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ--GVRECRE  226 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH--HHHHHHC
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH--HHHHHHH
Confidence            68999999988878899999999999999976543  4555543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.5e-16  Score=151.00  Aligned_cols=178  Identities=17%  Similarity=0.125  Sum_probs=145.8

Q ss_pred             CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073          139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      +.||.|+++|.+++.  .++..|+++|.+||.++++++..+.+.|  +||.|+++|++++.+++..|+++|.+|+..++.
T Consensus         2 ~~ip~lv~~L~~~~~--~~~~~a~~~l~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~   77 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDE--KYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CCHHHHHHHHHSSCT--HHHHHHHHHHHHHTSSCSSHHHHHHHTT--HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CCHHHHHHHhCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCC--cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            469999999998887  5799999999999988777888888887  699999999999999999999999999966554


Q ss_pred             hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhc---------------c
Q 040073          219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLD---------------V  283 (407)
Q Consensus       219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~---------------~  283 (407)
                      .+......|+++.|+.++...  .+++++..|+++|.+|+..+..+......| ++.++..+..               .
T Consensus        78 ~~~~i~~~g~v~~li~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~  154 (457)
T d1xm9a1          78 NKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSSTDELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREV  154 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTC--CCHHHHHHHHHHHHHHHTSSSTHHHHHHHH-HHHHHHHTTHHHHTCC---------C
T ss_pred             HHHHHHHCCChHHHHHHHhcc--CcHHHHHHHHHHHHHHHhhhhhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhccc
Confidence            444444568899999998765  388999999999999999888887777765 5555555421               1


Q ss_pred             cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH
Q 040073          284 TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI  323 (407)
Q Consensus       284 ~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l  323 (407)
                      .+..+.+.++.+|..++.+++++.......|+++.++.++
T Consensus       155 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll  194 (457)
T d1xm9a1         155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV  194 (457)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHH
Confidence            2567889999999999999988888777667777777654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.6e-16  Score=117.20  Aligned_cols=65  Identities=26%  Similarity=0.453  Sum_probs=53.2

Q ss_pred             CCCCc----ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCC-ccHHHHHHH
Q 040073            5 EVPAH----FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT-PNHTLRRLI   73 (407)
Q Consensus         5 ~~p~~----~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~-~n~~l~~~I   73 (407)
                      ++|++    |.||||.++|.|||+++|||+||+.||++|++.+ ..+||.|+.++...   ++. |..++.+.+
T Consensus        15 d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~p~~~~---~l~~P~~~~l~~l   84 (86)
T d1rmda2          15 DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPT---DLESPVKSFLNIL   84 (86)
T ss_dssp             CCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCBCCCHHHHHHH
T ss_pred             cchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhC-CCcCcccCCCCChh---hccCHHHHHHHHh
Confidence            45555    5899999999999999999999999999999763 67899999998764   443 566665554

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=4.5e-17  Score=110.75  Aligned_cols=51  Identities=22%  Similarity=0.408  Sum_probs=45.4

Q ss_pred             ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc
Q 040073           10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP   65 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~   65 (407)
                      +.||||+++|+|||++ .|||+|||.||.+|+.+  +.+||.|+++++.+   +++|
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~--~~~CP~c~~~l~~~---dLip   52 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIE---EIVE   52 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGG---GCEE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh--ccCCCccCCcCCHH---hcee
Confidence            4799999999999987 59999999999999986  66899999999875   6665

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.6e-17  Score=124.36  Aligned_cols=68  Identities=21%  Similarity=0.436  Sum_probs=58.3

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHHHHhcCC-CCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCK-NNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT   78 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~-~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~   78 (407)
                      ++|.||||.++|.|||+++|||+||+.||.+|+...+ ...||.|++++...   .+.+|..++++++.+..
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~---~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR---SLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT---TCBCCCSSSHHHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh---hCCcCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999997532 36899999999774   78899888777777643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-16  Score=119.80  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=58.2

Q ss_pred             CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073            6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI   79 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~   79 (407)
                      ++++|.||||.++|.|||++ +|||+||+.||.+|+..    .||.|+.++...   ++.+|..++++++.+...
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~~~~~~---~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCYTPAWIQ---DLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT----BCSSSCCBCSCS---SCCCCHHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc----cccccCCcCchh---hCcccHHHHHHHHHHHHH
Confidence            45678999999999999986 79999999999999842    499999998774   889999999999877543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=100.74  Aligned_cols=47  Identities=17%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      ..||||.+.+.|||+++|||+||+.||.+|+.. +.+.||.|++.+..
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~-~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHT-TCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHH-CcCcCCCCCcCccC
Confidence            469999999999999999999999999999975 36789999999865

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.9e-13  Score=90.45  Aligned_cols=45  Identities=13%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073            8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      +.+.||||++.|.|||+++|||+||+.||++|     ...||.|++++..
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~-----~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC-----CCcCcCCCCcccC
Confidence            44799999999999999999999999998754     5679999998765

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.17  E-value=5.5e-12  Score=88.88  Aligned_cols=45  Identities=29%  Similarity=0.496  Sum_probs=39.8

Q ss_pred             cCccccccCcCcee-cCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRDPVT-VSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~dPv~-~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      .||||.+.|.+|++ ++|||+||..||.+|++.  +.+||.|++++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh--CCcCCCCCcchHh
Confidence            49999999999865 799999999999999986  6789999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.8e-12  Score=87.44  Aligned_cols=50  Identities=14%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             CcccCccccccCcCc-----eecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073            8 AHFLCPISLQLMRDP-----VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET   58 (407)
Q Consensus         8 ~~~~Cpi~~~~~~dP-----v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~   58 (407)
                      ++..||||++.+..+     ++++|||+||+.||.+|+..+ +..||.|++++..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC-cCCCCCCCcCcccc
Confidence            568999999865332     567899999999999999763 67899999988653

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.1e-11  Score=78.15  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             cCccccccCcC----ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           11 LCPISLQLMRD----PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        11 ~Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -||||.+.|.+    +++++|||+|++.||.+|+.. ++..||.|++++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~-~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT-SCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh-cCCCCCccCCcCCC
Confidence            59999998854    345589999999999999975 36789999998865

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.98  E-value=1e-10  Score=78.22  Aligned_cols=48  Identities=19%  Similarity=0.464  Sum_probs=40.1

Q ss_pred             CCCcccCccccccCcCc---eec-CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073            6 VPAHFLCPISLQLMRDP---VTV-STGITYDRVNIERWLFTCKNNTCPVTKQVL   55 (407)
Q Consensus         6 ~p~~~~Cpi~~~~~~dP---v~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~   55 (407)
                      +.++..||||++-|.+.   +++ +|||.|+..||.+|+..  +.+||.|++++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh--CCcCCCCCCEe
Confidence            45778899999999763   344 59999999999999975  77899999764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=2.6e-09  Score=83.16  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             CCCCCcccCccccccCcCc------------------eecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073            4 IEVPAHFLCPISLQLMRDP------------------VTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE   57 (407)
Q Consensus         4 ~~~p~~~~Cpi~~~~~~dP------------------v~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~   57 (407)
                      +..+.+..||||++.|.++                  .+++|||.|++.||.+|+...   ++.+||.|+..+..
T Consensus        20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             hcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            4556677899999998764                  357899999999999999752   24689999987654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.62  E-value=8.1e-09  Score=70.26  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             CCcccCccccccCcCceecCC-----cccccHHHHHHHHhcCCCCCCcccccccc
Q 040073            7 PAHFLCPISLQLMRDPVTVST-----GITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus         7 p~~~~Cpi~~~~~~dPv~~~~-----g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      .+...|+||++-+.++.+.+|     +|.|.+.||++|+...++.+||.|++++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            355679999999999988776     49999999999997655789999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.9e-06  Score=82.77  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhC-h-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQS-E-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~-~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      |..|+..|++.+ ..|..|++.|..++..- + +.+     ...+|.|.+++++.+   .++..++..|.++...-. ..
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~lip~l~~~~~~~~---ev~~~~~~~l~~~~~~~~-~~   82 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTR-----SELLPFLTDTIYDED---EVLLALAEQLGTFTTLVG-GP   82 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHH-----HTHHHHHHHTCCCCH---HHHHHHHHHHTTCSGGGT-SG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHcC-Ch
Confidence            566888888888 88888999888886541 2 222     235777777765432   245555566655442110 01


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV  215 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~  215 (407)
                      +.+   + ..++.+..++...+..+|..|+.+|..+...
T Consensus        83 ~~~---~-~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~  117 (588)
T d1b3ua_          83 EYV---H-CLLPPLESLATVEETVVRDKAVESLRAISHE  117 (588)
T ss_dssp             GGG---G-GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             hHH---H-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence            111   1 1566666777777778888888888777654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.3e-08  Score=73.56  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=37.0

Q ss_pred             cCccccccCcC------------------ceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073           11 LCPISLQLMRD------------------PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ   56 (407)
Q Consensus        11 ~Cpi~~~~~~d------------------Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~   56 (407)
                      .|+||.+.|.+                  +++++|||.|...||.+|++.  +.+||.|++++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH--CCcCCCCCCccc
Confidence            49999888876                  245689999999999999975  778999998763

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.2e-05  Score=67.79  Aligned_cols=230  Identities=13%  Similarity=0.047  Sum_probs=143.7

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI  178 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  178 (407)
                      ...|++.|.+++ .+|..|+..|..+..+           .+++.|+++|.+.+.  .++..|+.+|..+...... ...
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~d~~~--~vr~~a~~aL~~l~~~~~~-~~~   86 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNY--IRRDIGAFILGQIKICKKC-EDN   86 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSH--HHHHHHHHHHHHSCCCTTT-HHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHcCCCH--HHHHHHHHHHHHhcccccc-ccc
Confidence            456777788777 8899999999877432           247999999987665  5689999999887643321 111


Q ss_pred             hhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073          179 VINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL  257 (407)
Q Consensus       179 i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L  257 (407)
                             .++.+. .++++.+..++..++.+|..+......     .....++.+...+.+.   ++.++..|+.++...
T Consensus        87 -------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~~~~~~~~l~~~~~d~---~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 -------VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK---STNVRRATAFAISVI  151 (276)
T ss_dssp             -------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS---CHHHHHHHHHHHHTC
T ss_pred             -------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch-----hhHHHHHHHHHHhcCc---chHHHHHHHHHHhhc
Confidence                   233333 456678999999999999998654321     1134677888888887   888888888877654


Q ss_pred             CCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh----------------HHHH------HhccCc
Q 040073          258 CPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG----------------RAEL------LKHGAG  315 (407)
Q Consensus       258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~----------------r~~i------~~~~g~  315 (407)
                      ..          ...++.++.++... +..+...+..++.........                +...      ......
T Consensus       152 ~~----------~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  220 (276)
T d1oyza_         152 ND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV  220 (276)
T ss_dssp             -------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGG
T ss_pred             ch----------HHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhh
Confidence            32          23344455555443 333333333333332221110                0000      011235


Q ss_pred             hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073          316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK  384 (407)
Q Consensus       316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~  384 (407)
                      ++.|+..+.  ++..+..++.+|..+.    +         .++++.|..+|..+.+..++..|...|+
T Consensus       221 ~~~L~~~l~--d~~vr~~a~~aL~~ig----~---------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         221 LSVLCDELK--KNTVYDDIIEAAGELG----D---------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHHHT--SSSCCHHHHHHHHHHC----C---------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhC--ChHHHHHHHHHHHHcC----C---------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            677777554  3456677777777664    1         2578889888887667888888877653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.5e-06  Score=80.27  Aligned_cols=256  Identities=12%  Similarity=0.112  Sum_probs=161.8

Q ss_pred             cCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhh
Q 040073          108 KKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEF  186 (407)
Q Consensus       108 ~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~  186 (407)
                      ...+ ..|..++..+..+++.-..   .......++.+..++.+.+.  .++..|+.++..++..-.. .. .. .  ..
T Consensus       174 ~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~i~~~~~~-~~-~~-~--~i  243 (588)
T d1b3ua_         174 SDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQD--SVRLLAVEACVNIAQLLPQ-ED-LE-A--LV  243 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCH--HHHTTHHHHHHHHHHHSCH-HH-HH-H--HT
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHhhccCCH-HH-HH-H--HH
Confidence            3344 7778888888888765221   12234456777777766554  4577888888776532111 11 11 1  15


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--CchH
Q 040073          187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--GRNR  264 (407)
Q Consensus       187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~n~  264 (407)
                      ++.+..++++.+..+|..++.+|..+...-...  ... ...++.+..++++.   +++++..|+.+|..++..  ....
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~ll~d~---~~~vr~~a~~~l~~~~~~l~~~~~  317 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhh--hhh-hhhhHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhhhh
Confidence            788888888889999999999999987543221  112 35789999999988   999999999999888753  2333


Q ss_pred             HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073          265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF  344 (407)
Q Consensus       265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~  344 (407)
                      ....-...+|.+...+.+. +..++..++.++..++.. -++.....  ..+|.+...+.+.++..+..++..+..+...
T Consensus       318 ~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~~~~-~~~~~~~~--~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~  393 (588)
T d1b3ua_         318 ENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPI-LGKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHH-HCHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhhhhc-cchhHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence            3333345788888888775 677777777776666531 12323333  2467777766666667777777666666543


Q ss_pred             CCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          345 SATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       345 ~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      .......     ...++.+..+++ +.+.+.|+.+...+..+...
T Consensus       394 ~~~~~~~-----~~ll~~l~~~~~-d~~~~~r~~~~~~l~~l~~~  432 (588)
T d1b3ua_         394 IGIRQLS-----QSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             SCHHHHH-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhh-----hHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            2221111     234556666665 34667777777776666543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.4e-05  Score=72.35  Aligned_cols=282  Identities=12%  Similarity=0.126  Sum_probs=166.8

Q ss_pred             hhHHHHHHHhcCCC---hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073           98 TQIVKILNDAKKSP---STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY  174 (407)
Q Consensus        98 ~~i~~ll~~L~~~~---~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  174 (407)
                      .-++.++..+.++.   ..+..++..+..+..........-.....++.++..+.+.+.+..++..|+..+..+......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            44666777776543   445567777777765432211111112346777888877665555688888888887754432


Q ss_pred             HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073          175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKAALKL  253 (407)
Q Consensus       175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a  253 (407)
                      ....-.... ...+.+...+.+++.+++..+..+|..+.......- .... ....+.+...+.+.   +.+.+..|+..
T Consensus       207 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~---~~~~~~~a~~~  281 (458)
T d1ibrb_         207 NFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVALQGIEF  281 (458)
T ss_dssp             HHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS---SHHHHHHHHHH
T ss_pred             hhhhHHHHH-HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccc---cHHHHHHHHHH
Confidence            211111111 156677788888899999999999999875433211 1111 22334455556666   88888888888


Q ss_pred             HHHhCCCCc---------------------hHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhcCHhhH
Q 040073          254 LVELCPWGR---------------------NRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCRCAEGR  306 (407)
Q Consensus       254 L~~L~~~~~---------------------n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~~~~~r  306 (407)
                      +..++....                     .-....-...++.+.+.+....      +..++..+..++..++..... 
T Consensus       282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-  360 (458)
T d1ibrb_         282 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-  360 (458)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH-
Confidence            887752110                     1111111223455555554321      224667777777777652211 


Q ss_pred             HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073          307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN  386 (407)
Q Consensus       307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l  386 (407)
                       .+..  ..++.+...+.+.+...++.|+.+|..++....... ... .-...++.|+..++ +.++.+|..|.+.|..+
T Consensus       361 -~~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~-~~~-~l~~i~~~l~~~l~-d~~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         361 -DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ-LKP-LVIQAMPTLIELMK-DPSVVVRDTAAWTVGRI  434 (458)
T ss_dssp             -THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT-TCT-TTTTHHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred             -hhhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhH-HHH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence             1222  134455554444456788889999999886433221 111 11357888999888 56999999999999988


Q ss_pred             Hhhcc
Q 040073          387 ARAWR  391 (407)
Q Consensus       387 ~~~~~  391 (407)
                      .+...
T Consensus       435 ~~~~~  439 (458)
T d1ibrb_         435 CELLP  439 (458)
T ss_dssp             HHHGG
T ss_pred             HHHhh
Confidence            87653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.3e-06  Score=64.77  Aligned_cols=46  Identities=9%  Similarity=0.139  Sum_probs=34.6

Q ss_pred             cccCccccccCc--C-ceecCCcccccHHHHHHHHhcC---C---CCCCcccccc
Q 040073            9 HFLCPISLQLMR--D-PVTVSTGITYDRVNIERWLFTC---K---NNTCPVTKQV   54 (407)
Q Consensus         9 ~~~Cpi~~~~~~--d-Pv~~~~g~t~~r~~i~~~~~~~---~---~~~cP~~~~~   54 (407)
                      ..-||||.+.+.  + |+.+.|||.||+.||.+|+...   +   ...||.|+.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            357999998874  3 4556899999999999999641   2   2369987653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.3e-05  Score=80.72  Aligned_cols=273  Identities=9%  Similarity=0.065  Sum_probs=169.6

Q ss_pred             hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073           98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK  176 (407)
Q Consensus        98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  176 (407)
                      ..|..+++++.+++ +.|+-|+..|......+...-+.-....+++.|+++|.+.+.  .++..|+..|..+...-.+  
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~--~Vq~~A~k~l~~l~~~~~~--   78 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG--EVQNLAVKCLGPLVSKVKE--   78 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTSCH--
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhCcH--
Confidence            45788999999998 889999998888654321100000111257889999976654  6799999988887644321  


Q ss_pred             hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC-chh--hhhc--hhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073          177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD-PFQ--LISV--KQEFFTEIVNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~--~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~A~  251 (407)
                      ..+ . .  .++.|...+.+++...+..+..+|..+...-. ...  .+..  ....++.|...+.+.  .+..++..|+
T Consensus        79 ~~~-~-~--l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~v~~~al  152 (1207)
T d1u6gc_          79 YQV-E-T--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL  152 (1207)
T ss_dssp             HHH-H-H--HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred             hhH-H-H--HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC--CCHHHHHHHH
Confidence            112 1 1  67788888888888889888888887643211 110  0110  112344455544443  3778888999


Q ss_pred             HHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-Cchh
Q 040073          252 KLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAA  330 (407)
Q Consensus       252 ~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~  330 (407)
                      .+|..+......-..-.....++.|+..|.+. +..++..|+.+|..++..-..  ...  ...++.+++.+... +...
T Consensus       153 ~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~-~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~  227 (1207)
T d1u6gc_         153 DIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMST  227 (1207)
T ss_dssp             HHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHH
Confidence            88888765222110001123456666666665 678999999999999874321  111  23466777766544 3556


Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      +..++.++..++...+.. ....  -...++.++..++. .++..|+.|...+..+...
T Consensus       228 ~~~~~~~l~~l~~~~~~~-~~~~--l~~i~~~l~~~l~~-~~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         228 TRTYIQCIAAISRQAGHR-IGEY--LEKIIPLVVKFCNV-DDDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             CTTHHHHHHHHHHHSSGG-GTTS--CTTHHHHHHHHHSS-CCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcchh-hHHH--HHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHh
Confidence            667788888888755432 1111  13578888888875 4788899999888877653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.0022  Score=64.52  Aligned_cols=275  Identities=13%  Similarity=0.069  Sum_probs=162.6

Q ss_pred             CChhhHHHHHHH-hcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           95 VDKTQIVKILND-AKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        95 ~~~~~i~~ll~~-L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      |+.+++..++.. +.+++ ..|..|-..|..+...++        .+.+..|.+.+.+...+..++..|+-.|.+.-...
T Consensus         1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~   72 (861)
T d2bpta1           1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK   72 (861)
T ss_dssp             CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence            355677777765 56777 778888888888765532        13567788888765544344666666676654322


Q ss_pred             hHH-Hh--------Hhhcc--chhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC
Q 040073          173 SYL-KS--------IVINN--GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ  241 (407)
Q Consensus       173 ~~~-~~--------~i~~~--gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  241 (407)
                      ... ..        .+...  . ..-..++..|.+.+..+|..++.++..++..+-..   ..-...++.|++.+.+.  
T Consensus        73 ~~~~~~~~~~~~~~~i~~~~~~-~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~---~~wpeli~~L~~~~~s~--  146 (861)
T d2bpta1          73 DSVKTQQFAQRWITQVSPEAKN-QIKTNALTALVSIEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAE--  146 (861)
T ss_dssp             SHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTT--
T ss_pred             cchhhhhHHhhhHhcCCHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc---CchHHHHHHHHHHhcCC--
Confidence            110 00        01100  0 12345667778889999999999999987543211   01135788899888776  


Q ss_pred             CCHHHHHHHHHHHHHhCCCCchHH-HHHh--cCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhH---HHHHhccC
Q 040073          242 FSQQASKAALKLLVELCPWGRNRI-KAVE--GGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGR---AELLKHGA  314 (407)
Q Consensus       242 ~~~~~~~~A~~aL~~L~~~~~n~~-~~v~--~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r---~~i~~~~g  314 (407)
                      .+...+..|+.+|..++..-+... .+..  ...+..+++.+... .+..++..++.+|..+...-...   ....  ..
T Consensus       147 ~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~  224 (861)
T d2bpta1         147 QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER--NY  224 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh--hH
Confidence            256678888999998875322211 1111  12334444444332 25678888999998877632211   1111  12


Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      .++.+...+...++..+..+..+|..++...... ....+.+  .+..+......+.++..+..|..++..+.+
T Consensus       225 ~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF-MKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG-CHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            3455556555566788889999999988644331 1222111  244444444445578888888888776654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.0007  Score=58.76  Aligned_cols=97  Identities=13%  Similarity=0.073  Sum_probs=75.9

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      ..+.|+++|+++++.+|..|+.+|..+..           ..+++.|+.+++++   ++.++..|+.+|..+........
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~---~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK---NYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCC---CHHHHHHHHHHHHHhcccccccc
Confidence            47788999999999999999999987631           35689999999998   99999999999999876544433


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR  301 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~  301 (407)
                      .     .++.|...+.+..+..++..++.+|..++.
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence            3     244555555444478889999999988765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.64  E-value=6.7e-05  Score=56.74  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=72.6

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073          186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI  265 (407)
Q Consensus       186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~  265 (407)
                      .++.|+..|++++..+|..|+.+|.++.           ..++++.|+.+|+++   ++.++..|+.+|..+..      
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~---~~~VR~~a~~aL~~i~~------   82 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDD---SGFVRSGAARSLEQIGG------   82 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHC---CTHHHHHHHHHHHHHCS------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHHhhhccc---hhHHHHHHHHHHHHhCc------
Confidence            5888999999999999999999987652           135789999999998   99999999999988742      


Q ss_pred             HHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073          266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLD  297 (407)
Q Consensus       266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~  297 (407)
                          .++++.|..++.+. +..++..|+.+|.
T Consensus        83 ----~~~~~~L~~ll~d~-~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ----ERVRAAMEKLAETG-TGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             ----cchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence                24688888888876 8889998888774

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0015  Score=67.02  Aligned_cols=268  Identities=10%  Similarity=-0.000  Sum_probs=147.1

Q ss_pred             HHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh--HHHhHhhc
Q 040073          105 NDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES--YLKSIVIN  181 (407)
Q Consensus       105 ~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~i~~  181 (407)
                      +.+.+++ ..|..|+.++..++....+.-.... ...++.|+..|.+.+.  .++..|+++|..++..-.  .....+. 
T Consensus       402 ~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~--~Vr~~a~~~l~~~~~~~~~~~~~~~~~-  477 (888)
T d1qbkb_         402 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKA--LVRSITCWTLSRYAHWVVSQPPDTYLK-  477 (888)
T ss_dssp             HTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCH--HHHHHHHHHHHHTHHHHHSSCHHHHTT-
T ss_pred             HhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhhhhhh-
Confidence            4445665 7788888999888765433211111 2346778888876554  568999999988763211  1122222 


Q ss_pred             cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073          182 NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW  260 (407)
Q Consensus       182 ~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~  260 (407)
                       .  .++.++..+.++++.++..|+.+|.++....... ...  ....++.|+..+...   +......+..++..++..
T Consensus       478 -~--~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~---~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         478 -P--LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKY---QHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             -T--HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHHH
T ss_pred             -h--hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHh
Confidence             2  7888898888899999999999999997543321 111  135677888888766   666666666666665431


Q ss_pred             ---CchHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc--CHh---hHHHHHhccCchHHHHHHH-------H
Q 040073          261 ---GRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR--CAE---GRAELLKHGAGLAVVSKKI-------L  324 (407)
Q Consensus       261 ---~~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~--~~~---~r~~i~~~~g~i~~Lv~~l-------~  324 (407)
                         .-++..+.+ ..++.+++...... +.......+..|..++.  ...   ....+...  .+..+...+       .
T Consensus       550 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~  626 (888)
T d1qbkb_         550 VGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR--CVNLVQKTLAQAMLNNA  626 (888)
T ss_dssp             HGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence               112223332 24555555543321 22222334444444332  111   11111110  111111111       0


Q ss_pred             cC------CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073          325 RV------SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA  389 (407)
Q Consensus       325 ~~------s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..      .......++.++..+...-+.. ....+.....++.++..++ +.++.+|+.|..++.-+.++
T Consensus       627 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~-~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~llgdl~~~  695 (888)
T d1qbkb_         627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGN-IEQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLTKA  695 (888)
T ss_dssp             CTTTSCCCCTHHHHHHHHHHHHHHHHHTTT-THHHHHTSCHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhh-hhhhhhHhhHHHHHHHHhC-CCChHHHHHHHHHHHHHHHh
Confidence            10      1233445555666555432221 2233334456777777776 56899999999999887765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0016  Score=68.96  Aligned_cols=231  Identities=12%  Similarity=0.042  Sum_probs=140.7

Q ss_pred             hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh----cCCChh
Q 040073           99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH----LNVSES  173 (407)
Q Consensus        99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~----L~~~~~  173 (407)
                      -++.+++.|..++ ++|..|+++|..++..-++...    ...++.|+..+.+...  ..+..+..+|..    +.....
T Consensus        46 i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~--~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCch--hhhHHHHHHHHHHHHhcccccc
Confidence            3566777777666 9999999999999876443321    1245667666655443  335555544443    222111


Q ss_pred             HH--HhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHH
Q 040073          174 YL--KSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA  250 (407)
Q Consensus       174 ~~--~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A  250 (407)
                      ..  ...+..   ..++.+...+.+ .+..++..+..+|..+.........- ....+++.|+..+.+.   ++.+++.|
T Consensus       120 ~~~~~~~~~~---~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~---~~~vR~~A  192 (1207)
T d1u6gc_         120 GSALAANVCK---KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP---RLAVRKRT  192 (1207)
T ss_dssp             -CCTHHHHHH---HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS---SHHHHHHH
T ss_pred             cchhHHHHHH---HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCC---CHHHHHHH
Confidence            10  111111   134455554444 46788889999998886543322111 1235788888888887   89999999


Q ss_pred             HHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHcCCch
Q 040073          251 LKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILRVSHA  329 (407)
Q Consensus       251 ~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~~s~~  329 (407)
                      +.+|..|+..-...   .-...++.+++.|....+...+..++.+|..++.....+  +..+ ...++.+++.+...++.
T Consensus       193 ~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~  267 (1207)
T d1u6gc_         193 IIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDE  267 (1207)
T ss_dssp             HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTT
T ss_pred             HHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHH
Confidence            99999998743221   112357777877765434555666777777776522111  2222 34577777776666788


Q ss_pred             hhHHHHHHHHHHhccCCc
Q 040073          330 ASDRAVRILCSVCKFSAT  347 (407)
Q Consensus       330 ~~e~a~~~L~~l~~~~~~  347 (407)
                      .++.++.++..+....++
T Consensus       268 ~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         268 LREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             THHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhChh
Confidence            999999999988876554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0086  Score=60.17  Aligned_cols=273  Identities=13%  Similarity=0.113  Sum_probs=157.8

Q ss_pred             hhHHHHHHHhcCCC---hHHHHHHHHHHHHhhhChhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073           98 TQIVKILNDAKKSP---STGRKCLRRLRSITLQSERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE  172 (407)
Q Consensus        98 ~~i~~ll~~L~~~~---~~~~~al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  172 (407)
                      +-++.+++.+.+++   ..+..++..|..++++-..  ..+..  ...++.++..+.+.+.+..++..|+.++.+....-
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence            45677777776554   3466788899888765221  11221  34578888888766654456777887776644322


Q ss_pred             hHHH--hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073          173 SYLK--SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQQASKA  249 (407)
Q Consensus       173 ~~~~--~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~  249 (407)
                      ....  ....  . ..++.+...+.+++.+++..+..++..+....... ..... ......+...+.+.   +.+.+..
T Consensus       206 ~~~~~~~~~~--~-~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~---~~~~~~~  278 (876)
T d1qgra_         206 KANFDKESER--H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVALQ  278 (876)
T ss_dssp             HHHHTSHHHH--H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCS---SHHHHHH
T ss_pred             hhhhhHHHHH--H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccc---cHHHHHH
Confidence            1111  1111  1 15666677778889999999999999987654322 11111 23445555666666   7788887


Q ss_pred             HHHHHHHhCCCCc---------------------hHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhcC
Q 040073          250 ALKLLVELCPWGR---------------------NRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCRC  302 (407)
Q Consensus       250 A~~aL~~L~~~~~---------------------n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~~  302 (407)
                      +...+..++....                     .-........++.+...+....      +..+...+..+|..++..
T Consensus       279 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~  358 (876)
T d1qgra_         279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  358 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence            7776666653110                     1111111223444444443321      223566677777766642


Q ss_pred             HhhHHHHHhccCchHHHHHHHH----cCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073          303 AEGRAELLKHGAGLAVVSKKIL----RVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER  378 (407)
Q Consensus       303 ~~~r~~i~~~~g~i~~Lv~~l~----~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~  378 (407)
                      ..        ...++.++..+.    ..+...++.++..+..+....... .... .-...++.++..++ +.++.+|..
T Consensus       359 ~~--------~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~l~~~l~-d~~~~vr~~  427 (876)
T d1qgra_         359 CE--------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKP-LVIQAMPTLIELMK-DPSVVVRDT  427 (876)
T ss_dssp             HG--------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHH-HHHHHHHHHHHHHT-CSSHHHHHH
T ss_pred             hh--------hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHH-HHHH-HHHHHHHHHHHhhc-CCccHHHHH
Confidence            21        123444444333    234566777777777776543332 2222 22346788888887 568999999


Q ss_pred             HHHHHHHHHhhc
Q 040073          379 AREILKLNARAW  390 (407)
Q Consensus       379 A~~lL~~l~~~~  390 (407)
                      |.+.+..+.+..
T Consensus       428 a~~~l~~~~~~~  439 (876)
T d1qgra_         428 AAWTVGRICELL  439 (876)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHc
Confidence            999998888754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=0.00032  Score=52.77  Aligned_cols=87  Identities=21%  Similarity=0.114  Sum_probs=70.5

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF  219 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~  219 (407)
                      .++.|+..|.+.+.  .++..|+.+|.++..            . ++++.|+.+|++.++.+|..|+.+|..+.      
T Consensus        23 ~~~~L~~~l~d~~~--~vR~~a~~~L~~~~~------------~-~~~~~L~~~l~d~~~~VR~~a~~aL~~i~------   81 (111)
T d1te4a_          23 AFEPLLESLSNEDW--RIRGAAAWIIGNFQD------------E-RAVEPLIKLLEDDSGFVRSGAARSLEQIG------   81 (111)
T ss_dssp             THHHHHHGGGCSCH--HHHHHHHHHHGGGCS------------H-HHHHHHHHHHHHCCTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcCCCH--HHHHHHHHHHHhcch------------h-hhHHHHHhhhccchhHHHHHHHHHHHHhC------
Confidence            57889999986655  468999998876431            1 26889999999999999999999998873      


Q ss_pred             hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073          220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV  255 (407)
Q Consensus       220 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~  255 (407)
                          . .+.++.|..+++++   ++.+++.|+.+|.
T Consensus        82 ----~-~~~~~~L~~ll~d~---~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 ----G-ERVRAAMEKLAETG---TGFARKVAVNYLE  109 (111)
T ss_dssp             ----S-HHHHHHHHHHTTSC---CTHHHHHHHHHGG
T ss_pred             ----c-cchHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence                1 35688899999988   9999999998874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.026  Score=52.64  Aligned_cols=224  Identities=13%  Similarity=0.164  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHhcCCChhHHHhHhh-ccchhhHHHHHHHHhc--C---------------ChhHHHHHHHHHHHhhccCCc
Q 040073          157 ECDEALSILYHLNVSESYLKSIVI-NNGEEFLESLMRVLKC--G---------------NYQSRSYAIMLLKSIFEVADP  218 (407)
Q Consensus       157 ~~~~a~~~L~~L~~~~~~~~~~i~-~~gg~~i~~Lv~lL~~--~---------------~~~~~~~a~~~L~~Ls~~~~~  218 (407)
                      .+.-++..+..+...++ .+..+- ..+ ..++.|+.+|..  +               ..+..=++.-++.-|+...+.
T Consensus       181 ~~~i~v~~lq~llr~~~-~R~~fw~~~~-~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~  258 (477)
T d1ho8a_         181 TCYVCIRLLQELAVIPE-YRDVIWLHEK-KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF  258 (477)
T ss_dssp             HHHHHHHHHHHHHTSHH-HHHHHHTTHH-HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHHHHHHHHHHHhcCcc-HHHHHHHccc-chHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence            46667777777776665 455543 223 367788887754  1               234567888889999865554


Q ss_pred             hhhhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--h----HHHHHhcCchHHHHHHhhcc--cchhHH
Q 040073          219 FQLISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--N----RIKAVEGGGVSVLVDLLLDV--TERRVC  289 (407)
Q Consensus       219 ~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n----~~~~v~~G~v~~Lv~lL~~~--~~~~~~  289 (407)
                      ...+... .+.|+.|+++++..  ....+.+.++.+|+|+.....  +    ...++..+++ ++++.|..+  .|+++.
T Consensus       259 ~~~l~~~~~~~i~~l~~i~~~s--~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl~  335 (477)
T d1ho8a_         259 ANELVQKYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELR  335 (477)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHHHH
Confidence            4444332 25689999999876  467899999999999987532  2    3334555644 556667654  255554


Q ss_pred             HHHHHHH-------HHHhcCHhhHHHHHh----------------c---------cCchHHHHHHHHc--------C--C
Q 040073          290 ELMLNVL-------DLLCRCAEGRAELLK----------------H---------GAGLAVVSKKILR--------V--S  327 (407)
Q Consensus       290 ~~al~~L-------~~L~~~~~~r~~i~~----------------~---------~g~i~~Lv~~l~~--------~--s  327 (407)
                      +..-.+-       ..++..++.+.++-.                .         ...+..|+++|..        .  +
T Consensus       336 edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D  415 (477)
T d1ho8a_         336 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  415 (477)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCC
Confidence            3322221       223333344433321                1         1245677776642        1  2


Q ss_pred             chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      +.....|+.=+..++++.++.  +..+-+.|+=..++.+|. +.++.+|..|-..++.+=.
T Consensus       416 ~~~lAVAc~DiGefvr~~P~g--r~il~~lg~K~~vM~Lm~-h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         416 KIIIQVALNDITHVVELLPES--IDVLDKTGGKADIMELLN-HSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTH--HHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHH
T ss_pred             cceeehhhhhHHHHHHHCcch--hHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            445566777788888887774  555557899888899997 5699999999888866544

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.017  Score=53.86  Aligned_cols=248  Identities=12%  Similarity=0.048  Sum_probs=157.4

Q ss_pred             cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH---HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC
Q 040073          140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESY---LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA  216 (407)
Q Consensus       140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~---~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~  216 (407)
                      ++..++++|...... +.....+..+..|-..++.   ......+.....-+.+...|.+++.-....+..++..++...
T Consensus        75 ~~~~~l~lL~~~sk~-d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNE-DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCH-HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcH-HHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            578888999876552 3456666655554433321   122333222113345556665566666677777777776554


Q ss_pred             Cchhhhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcc----------
Q 040073          217 DPFQLISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDV----------  283 (407)
Q Consensus       217 ~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~----------  283 (407)
                      ......... ......+-.+...+   +.+.+..|+..|..|...++.|..+..  ...+++|++.|...          
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~---~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIE---QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTT---CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccccchHHHHHHhhHHHHHhhccc---ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            433222111 11122222233445   788888899999999999999988854  45688888888651          


Q ss_pred             ------cchhHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCc---hHHHH
Q 040073          284 ------TERRVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSAT---ARVLQ  352 (407)
Q Consensus       284 ------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~---~~~~~  352 (407)
                            .+..+.-.++-+++.|+-.++....+..+. +-|+.++.++... .++....++.+|.|++.....   .....
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                  123456789999999999888877776642 3488888866544 378899999999999875332   22445


Q ss_pred             HHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhccC
Q 040073          353 EMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARAWRD  392 (407)
Q Consensus       353 ~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~~~~  392 (407)
                      .|+..+++ +++..|+..  .++...+--..+-..|.+....
T Consensus       311 ~~v~~~~l-~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~  351 (477)
T d1ho8a_         311 LLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQE  351 (477)
T ss_dssp             HHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcchh-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            56666655 666777765  4888888877777777765433

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0074  Score=55.56  Aligned_cols=271  Identities=10%  Similarity=0.037  Sum_probs=152.4

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhc-CCChhHHHh
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHL-NVSESYLKS  177 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~~~~  177 (407)
                      +..+++.+.+++ +.+..|-+.|..+...++.        +.+..|..++.+...+..++..|+-.|.+. .........
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            456777777887 8888888899888765321        246777788876544333455565566553 222211111


Q ss_pred             Hhhc---------cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073          178 IVIN---------NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       178 ~i~~---------~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      ...+         .. .....++..+.+.+. .+..++.++..++......   ..-.+.++.|+..+.++. .+...+.
T Consensus        74 ~~~~~~~~l~~~~~~-~i~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~-~~~~~~~  147 (458)
T d1ibrb_          74 QYQQRWLAIDANARR-EVKNYVLQTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPN-STEHMKE  147 (458)
T ss_dssp             HHHHHHHTSCHHHHH-HHHHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTT-CCHHHHH
T ss_pred             HHhhhhccCCHHHHH-HHHHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhc-chHHHHH
Confidence            1100         01 134456666655543 3344555666554332111   112367888998887531 2567788


Q ss_pred             HHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHH--HHHhccCchHHHHHHHH
Q 040073          249 AALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRA--ELLKHGAGLAVVSKKIL  324 (407)
Q Consensus       249 ~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~--~i~~~~g~i~~Lv~~l~  324 (407)
                      .++.+|..++... .....-.-...++.+++.+.+. .+..++..++.++..+........  .... ....+.+...+.
T Consensus       148 ~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~  226 (458)
T d1ibrb_         148 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQ  226 (458)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhc
Confidence            8888888876522 2211112223567777777654 246788899999998876433211  1111 123344444444


Q ss_pred             cCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          325 RVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       325 ~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ..++..+..++.+|..++...+.. .... +.......+...+. +..+..+..|...+..+.+
T Consensus       227 ~~~~~~~~~~~~~l~~i~~~~~~~-~~~~-l~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         227 CPDTRVRVAALQNLVKIMSLYYQY-METY-MGPALFAITIEAMK-SDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGG-CTTT-TTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHHH-HHHH-HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence            446778889999999988654431 1111 11122223334344 4578888888888877755

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.042  Score=54.62  Aligned_cols=275  Identities=11%  Similarity=0.081  Sum_probs=152.8

Q ss_pred             hhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073           98 TQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVSES  173 (407)
Q Consensus        98 ~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  173 (407)
                      .-++.++..+.+++  ..+..|+..|..++......-..+..  ...+..+++.+.+.+.+..++..|+.++.++...-.
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  213 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHh
Confidence            45667777776554  45667888898887653221111111  112333344444444444568888888887654322


Q ss_pred             HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHH-HHHcccCCCCCHHHHHHHH
Q 040073          174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEI-VNVLRDHHQFSQQASKAAL  251 (407)
Q Consensus       174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~L-v~lL~~~~~~~~~~~~~A~  251 (407)
                      .......... ..++.+...+++++.+++..+..++..+....... ....  ...+..+ ....++.   +++++..+.
T Consensus       214 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l--~~~l~~l~~~~~~~~---~~~v~~~~~  287 (861)
T d2bpta1         214 NNMEREGERN-YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM--EQALYALTIATMKSP---NDKVASMTV  287 (861)
T ss_dssp             HHHTSHHHHH-HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH--HHTHHHHHHHHTTCS---SHHHHHHHH
T ss_pred             HhHHhhhhhh-HHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCc---cHHHHHHHH
Confidence            2211111111 15777888888899999999999999987543221 1111  1223333 3344455   788888888


Q ss_pred             HHHHHhCCCCch------------------HHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhcCHhhHH
Q 040073          252 KLLVELCPWGRN------------------RIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCRCAEGRA  307 (407)
Q Consensus       252 ~aL~~L~~~~~n------------------~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~~~~~r~  307 (407)
                      ..+..++.....                  ..... ...++.+...+....      +......+..+|..++.....  
T Consensus       288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  364 (861)
T d2bpta1         288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--  364 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--
Confidence            887766532111                  01111 124555555554321      123455566666666542211  


Q ss_pred             HHHhccCchHHHHHHH----HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          308 ELLKHGAGLAVVSKKI----LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       308 ~i~~~~g~i~~Lv~~l----~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                            ..++.+...+    ...+...++.|+.++..+....... ...... ...++.++..+. +.++.+|..|.+.+
T Consensus       365 ------~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~-~~~~~l-~~~l~~l~~~l~-d~~~~vr~~a~~~l  435 (861)
T d2bpta1         365 ------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV-QRTYYV-HQALPSILNLMN-DQSLQVKETTAWCI  435 (861)
T ss_dssp             ------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHH-HHHHHHHHHGGG-CSCHHHHHHHHHHH
T ss_pred             ------hhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchh-hHHHHH-HHHHHHHHHHhc-CcchhhhhHHHHHH
Confidence                  1233333322    2334567888888888888654332 222222 246777888777 56899999999999


Q ss_pred             HHHHhhc
Q 040073          384 KLNARAW  390 (407)
Q Consensus       384 ~~l~~~~  390 (407)
                      ..+.+..
T Consensus       436 ~~l~~~~  442 (861)
T d2bpta1         436 GRIADSV  442 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.026  Score=57.39  Aligned_cols=216  Identities=13%  Similarity=0.102  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhcCCCh-hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073          158 CDEALSILYHLNVSE-SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL  236 (407)
Q Consensus       158 ~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL  236 (407)
                      ...++.++..+...- .....++....  .++.+...+++.+.++|+.|..++..++........-.. ..+++.|+.-|
T Consensus       639 ~~~~l~~l~~l~~~l~~~~~~~~~~~~--l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L  715 (888)
T d1qbkb_         639 MIVALDLLSGLAEGLGGNIEQLVARSN--ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNL  715 (888)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHTSC--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHhh--HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHh
Confidence            444555554443211 11234444443  688888999999999999999999998765433221111 35788888888


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc-CHhhHHHHHhcc
Q 040073          237 RDHHQFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR-CAEGRAELLKHG  313 (407)
Q Consensus       237 ~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~-~~~~r~~i~~~~  313 (407)
                      .+.   +.+++.+|++++..|+..- +.-...+. .+++.|+.+|.+.. +..++++++.+|..|+. +++.-....  +
T Consensus       716 ~~~---~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l--~  789 (888)
T d1qbkb_         716 NPE---FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML--Q  789 (888)
T ss_dssp             CGG---GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG--G
T ss_pred             CcC---CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH--H
Confidence            887   8899999999999888632 22222222 47788888887642 45688999999999876 333221112  2


Q ss_pred             CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 040073          314 AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARA  389 (407)
Q Consensus       314 g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~  389 (407)
                      ..++.+...|... +...++.|...++.+....+.. +      ..-+..++..+-+.  ..+..+.....+|..+...
T Consensus       790 ~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~-~------~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~  861 (888)
T d1qbkb_         790 QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG-V------IQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQ  861 (888)
T ss_dssp             GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGG-T------GGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHH-H------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3677788877654 4667888888888888754431 1      12355555555443  4788899999998887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.043  Score=54.83  Aligned_cols=270  Identities=10%  Similarity=0.027  Sum_probs=153.0

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC-CChhHHHh
Q 040073          100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN-VSESYLKS  177 (407)
Q Consensus       100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~  177 (407)
                      +..+++...+++ +.+..|-..|..+.+.++        .|.+..|.+.+.+...+..++..|+-.|.|.- ........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~   74 (876)
T d1qgra_           3 LITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhh
Confidence            456677777777 777778788888766532        13577788888766544334666666666633 22111111


Q ss_pred             H-------hhc--cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073          178 I-------VIN--NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK  248 (407)
Q Consensus       178 ~-------i~~--~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  248 (407)
                      .       +..  .. .....++..|.+.+. .+..++.++..++..+-..   ..-.+.++.|++.+.+++ .+...+.
T Consensus        75 ~~~~~~~~i~~~~k~-~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~---~~Wpeli~~L~~~l~~~~-~~~~~~~  148 (876)
T d1qgra_          75 QYQQRWLAIDANARR-EVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPN-STEHMKE  148 (876)
T ss_dssp             HHHHHHHTSCHHHHH-HHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTT-CCHHHHH
T ss_pred             hhhcccccCCHHHHH-HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCc---cccHHHHHHHHHHhcCCC-CcHHHHH
Confidence            0       100  01 134566777776553 4556788888887543111   111368999999886541 2467888


Q ss_pred             HHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHH--HHHhccCchHHHHHHH
Q 040073          249 AALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRA--ELLKHGAGLAVVSKKI  323 (407)
Q Consensus       249 ~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~--~i~~~~g~i~~Lv~~l  323 (407)
                      .++.+|..++..-.. ..+..  ...++.+++.+.+. .+..++..++.++...........  .... .-.+..+...+
T Consensus       149 ~~l~~l~~i~~~~~~-~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~i~~~l~~~~  226 (876)
T d1qgra_         149 STLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEAT  226 (876)
T ss_dssp             HHHHHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHh
Confidence            899999988752221 11111  24677788877654 245778888888877655322111  0111 11223333333


Q ss_pred             HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073          324 LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR  388 (407)
Q Consensus       324 ~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  388 (407)
                      ...+...+..+..+|..++....+. .... +....++.+...+. ...+..+..|...+..+.+
T Consensus       227 ~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         227 QCPDTRVRVAALQNLVKIMSLYYQY-METY-MGPALFAITIEAMK-SDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHSGGG-CHHH-HTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHH-HHHH-HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence            3345778889999999988765432 2222 22234444445555 3467777777766655544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=2.2  Score=37.00  Aligned_cols=193  Identities=15%  Similarity=0.159  Sum_probs=130.8

Q ss_pred             HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHH----HHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073          101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNR----SCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL  175 (407)
Q Consensus       101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r----~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  175 (407)
                      ..|+..|..=+ +.|..+......+.+.....|    +.+.. . .+.|..++...+.+. .--.+=..|.....++. .
T Consensus        72 ~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~-~-~eil~~L~~gye~~e-iAl~~G~mLREcik~e~-l  147 (330)
T d1upka_          72 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-Q-QNILFMLLKGYESPE-IALNCGIMLRECIRHEP-L  147 (330)
T ss_dssp             HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-C-THHHHHHHHGGGSTT-THHHHHHHHHHHHTSHH-H
T ss_pred             HHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc-C-HHHHHHHHhhcCCcc-hhhhhhHHHHHHHhhHH-H
Confidence            34444444445 777777777777766543333    44443 2 244444444333322 34555557778777765 4


Q ss_pred             HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhh--chhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073          176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLIS--VKQEFFTEIVNVLRDHHQFSQQASKAALK  252 (407)
Q Consensus       176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~  252 (407)
                      .+++...+  .+..+....+.++-++...|..++..|...+... ....  ....++...-.+|.++   +--+++.++.
T Consensus       148 ak~iL~s~--~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~---NYVtrRqSlK  222 (330)
T d1upka_         148 AKIILWSE--QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE---NYVTKRQSLK  222 (330)
T ss_dssp             HHHHHHSG--GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---SHHHHHHHHH
T ss_pred             HHHHHccH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC---chHHHHHHHH
Confidence            45555554  5888889999999999999999999886544321 1111  1234667777899888   9999999999


Q ss_pred             HHHHhCCCCchHHHHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073          253 LLVELCPWGRNRIKAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       253 aL~~L~~~~~n~~~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~  303 (407)
                      .|..+.....|...|..    ..-+..++.+|++. +..++-+|..++.....++
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCC
Confidence            99999998888777644    23577888889887 7899999998888776654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.79  E-value=2.9  Score=36.70  Aligned_cols=196  Identities=12%  Similarity=0.109  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHh----cCc---
Q 040073           68 TLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEA----AGA---  140 (407)
Q Consensus        68 ~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~----~G~---  140 (407)
                      .+.+.+++.++.+... +    .   .-.+..+..|++.+..-+.   +.+..++.-....+..|..+.+    .|.   
T Consensus        21 ~~~~~l~~L~~~~~~~-v----~---~~~~~kF~~Lv~~lR~~~~---e~l~~v~~~~~~~~~~r~~~lDal~~~GT~~a   89 (336)
T d1lsha1          21 EIHTVLKHLVENNQLS-V----H---EDAPAKFLRLTAFLRNVDA---GVLQSIWHKLHQQKDYRRWILDAVPAMATSEA   89 (336)
T ss_dssp             HHHHHHHHHHHHCSSS-C----C---TTHHHHHHHHHHHHTTSCH---HHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHH
T ss_pred             HHHHHHHHHHHhcccc-c----C---cchHHHHHHHHHHHHCCCH---HHHHHHHHHHhcChhHHHHHHHHHHHhCCHHH
Confidence            4566667666665421 1    1   0114567788888876642   2233344444445666665554    454   


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc----CChhHHHHHHHHHHHhhcc-
Q 040073          141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEV-  215 (407)
Q Consensus       141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~-  215 (407)
                      +..+.+++.+..-+   ..+|...|..+.....-..+        .+..+..++++    +++.++..+.-++.++... 
T Consensus        90 ~~~i~~~I~~~~ls---~~ea~~~l~~l~~~~~Pt~~--------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~  158 (336)
T d1lsha1          90 LLFLKRTLASEQLT---SAEATQIVASTLSNQQATRE--------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY  158 (336)
T ss_dssp             HHHHHHHHHTTCSC---HHHHHHHHHHHHHTCCCCHH--------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC---HHHHHHHHHHHhccCCCCHH--------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence            45566666655542   33444444443322211122        34444555543    4677777777777776532 


Q ss_pred             ---CCchhhhhchhhhHHHHHHHc----ccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-----
Q 040073          216 ---ADPFQLISVKQEFFTEIVNVL----RDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-----  283 (407)
Q Consensus       216 ---~~~~~~i~~~~g~i~~Lv~lL----~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-----  283 (407)
                         .+.+.     ...++.+.+.+    ..+   +.+-+..++.+|.|+..          .+.++.|...+.+.     
T Consensus       159 c~~~~~~~-----~~~~~~l~~~l~~~~~~~---~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~  220 (336)
T d1lsha1         159 CANTVSCP-----DELLQPLHDLLSQSSDRA---KEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLD  220 (336)
T ss_dssp             HTTCSSCC-----GGGTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCC
T ss_pred             hcCCCCCc-----HHHHHHHHHHHHHhhccc---chHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccc
Confidence               22211     12344444444    445   67777888999999853          12456666666432     


Q ss_pred             -cchhHHHHHHHHHHHHhcCH
Q 040073          284 -TERRVCELMLNVLDLLCRCA  303 (407)
Q Consensus       284 -~~~~~~~~al~~L~~L~~~~  303 (407)
                       .+..++..|+.+|..++...
T Consensus       221 ~~~~~vR~aAi~Alr~~~~~~  241 (336)
T d1lsha1         221 EYSTRVQAEAIMALRNIAKRD  241 (336)
T ss_dssp             CSCHHHHHHHHHTTTTGGGTC
T ss_pred             cccHHHHHHHHHHHHHhhhcC
Confidence             13568889999999887753

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=4.7  Score=35.32  Aligned_cols=178  Identities=15%  Similarity=0.133  Sum_probs=110.0

Q ss_pred             HHHhcCCC--hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccC----C--C---CchHHHHHHHHHhcCCC
Q 040073          104 LNDAKKSP--STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSD----A--G---SDECDEALSILYHLNVS  171 (407)
Q Consensus       104 l~~L~~~~--~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~----~--~---~~~~~~a~~~L~~L~~~  171 (407)
                      +..|++..  +.....+..|+--.+. .......+ ..+|+..|+.+|..-.    .  .   ...+.+.+..|..+...
T Consensus         8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~   86 (343)
T d2bnxa1           8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   86 (343)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence            44454432  3233445555443333 33444455 5667888888885321    1  1   11355677888888878


Q ss_pred             hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC---chhhhh---------chhhhHHHHHHHcccC
Q 040073          172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD---PFQLIS---------VKQEFFTEIVNVLRDH  239 (407)
Q Consensus       172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~~~i~---------~~~g~i~~Lv~lL~~~  239 (407)
                      ..+...++...+  .+..++..|.+....++..|..+|..++...+   ....+.         ...+-+.++|+.++++
T Consensus        87 ~~G~~~vl~~~~--~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          87 KFGIKTMLETEE--GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             HHHHHHHHHSSS--HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             HHHHHHHHcChH--HHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            777777777665  79999999999999999999999999875432   222221         1123456778777766


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHhcCchHHHHHHhhcccchh
Q 040073          240 HQFSQQASKAALKLLVELCPWGR-------NRIKAVEGGGVSVLVDLLLDVTERR  287 (407)
Q Consensus       240 ~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~~~~~  287 (407)
                        .+.+.+...+..+-.|..+.+       -|..+...| +..+++.|....++.
T Consensus       165 --~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~G-l~~il~~l~~~~~~~  216 (343)
T d2bnxa1         165 --TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENED  216 (343)
T ss_dssp             --SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHH
T ss_pred             --ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCC-hHHHHHHHHccCChH
Confidence              366777766666666666544       255556677 556677776643333

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.79  E-value=2  Score=37.88  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             hcCchHHHHHHhhcc--------c--chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHH
Q 040073          269 EGGGVSVLVDLLLDV--------T--ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL  338 (407)
Q Consensus       269 ~~G~v~~Lv~lL~~~--------~--~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L  338 (407)
                      ..+|+..|+.+|..-        .  +....-.++.+|..|..+..|...+..+..++..++..|.......+..|+.+|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            445677777777431        0  234556899999999999999999999999999999877766788999999999


Q ss_pred             HHHhccCCc---hHHHH-------HHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073          339 CSVCKFSAT---ARVLQ-------EMLQVGVVSKLCLVLQVDASVKTKERAREIL  383 (407)
Q Consensus       339 ~~l~~~~~~---~~~~~-------~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL  383 (407)
                      ..+|..+..   ....-       ...+.+-+..++..|+...+...+..+-.++
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lI  177 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI  177 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHH
Confidence            999965321   11111       1223466777877777554444444433333

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.48  E-value=0.048  Score=46.20  Aligned_cols=63  Identities=5%  Similarity=-0.091  Sum_probs=35.6

Q ss_pred             hHHHHHHHHcCCchhhHHHHHH-----HHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073          316 LAVVSKKILRVSHAASDRAVRI-----LCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE  381 (407)
Q Consensus       316 i~~Lv~~l~~~s~~~~e~a~~~-----L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~  381 (407)
                      .+.|..++.+.++..+..++..     |..+.. ..+..++..+++... +.++..|. +.++.+|+.|+.
T Consensus       164 ~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~-D~d~~VR~aaae~~~-~~ll~~L~-D~d~~VR~aA~~  231 (233)
T d1lrva_         164 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLH-DPDWTVRLAAVEHAS-LEALRELD-EPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGG-CSSHHHHHHHHHHSC-HHHHHHCC-CCCHHHHHHHHC
T ss_pred             HHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHh-CCCHHHHHHHHHhcc-HHHHHHhC-CCCHHHHHHHHH
Confidence            4445544444445555555542     333333 345557777766543 45667775 678888888763

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.26  E-value=0.36  Score=37.27  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP  394 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~  394 (407)
                      ++..|.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+.+.+..|..++.......+|+++..+++.....+...|
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~-~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  121 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD  121 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch-HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            345677777777889999999999999887654 4677777788999999998877788899999999998887665554

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.75  E-value=0.21  Score=34.07  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=36.1

Q ss_pred             ccCccccccC-----cCceecC--CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073           10 FLCPISLQLM-----RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQE   57 (407)
Q Consensus        10 ~~Cpi~~~~~-----~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~   57 (407)
                      -.|.||++-.     -+|.+.+  ||.-.||.|.+-=.++ |+..||.|+.++..
T Consensus        17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCkt~Ykr   70 (93)
T d1weoa_          17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR   70 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred             chhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhc-cCccCcccCChhhh
Confidence            4799998643     3555553  8999999999887765 59999999987754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.49  E-value=0.038  Score=46.90  Aligned_cols=12  Identities=25%  Similarity=0.288  Sum_probs=9.5

Q ss_pred             HHHHHHHHHhcc
Q 040073           70 RRLIQAWCTINA   81 (407)
Q Consensus        70 ~~~I~~~~~~~~   81 (407)
                      .+.|+.|+..|+
T Consensus        33 ~~~~drf~~~~p   44 (233)
T d1lrva_          33 GRQIDRFFRNNP   44 (233)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHhcCH
Confidence            467888888887

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.68  Score=35.50  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..+.+.|.++++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++..     .....+|+++..+++..+..
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~-~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355677778777889999999999999887765 477888888899999888863     24688999999999988777


Q ss_pred             ccCCC
Q 040073          390 WRDSP  394 (407)
Q Consensus       390 ~~~~~  394 (407)
                      +++.|
T Consensus       118 f~~~~  122 (143)
T d1mhqa_         118 FPEDI  122 (143)
T ss_dssp             CTTCH
T ss_pred             cCCCc
Confidence            66544

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=2.2  Score=32.53  Aligned_cols=75  Identities=19%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073          315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA  389 (407)
Q Consensus       315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~  389 (407)
                      ++..+-+.|.+.++..+-.|+.+|-.+..+++. .+..++.+.+.+..|+.++..     .....+|+++..+++.-...
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~-~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhH-HHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            355677778777888999999999998887665 488888888999999999862     24678999998888876554


Q ss_pred             c
Q 040073          390 W  390 (407)
Q Consensus       390 ~  390 (407)
                      .
T Consensus       125 f  125 (145)
T d1ujka_         125 L  125 (145)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=80.51  E-value=0.24  Score=29.81  Aligned_cols=13  Identities=23%  Similarity=0.761  Sum_probs=11.3

Q ss_pred             CCCCcccCccccc
Q 040073            5 EVPAHFLCPISLQ   17 (407)
Q Consensus         5 ~~p~~~~Cpi~~~   17 (407)
                      ++|+++.||+|+-
T Consensus        25 ~LP~dw~CP~C~a   37 (45)
T d6rxna_          25 QLPDDWCCPVCGV   37 (45)
T ss_dssp             GSCTTCBCTTTCC
T ss_pred             HCCCCCCCcCCCC
Confidence            5899999999974