Citrus Sinensis ID: 040200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MASTSKESKSKALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPSHSSL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHHHHcccEEcccccccHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mastskesksKALLLSVNLIFFIFLtsipssaeeqpacsdnfleLDVCVDVLEALsrhlappsknyccSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYceseipsdfqcinlpshssl
Flexible Loop (DISEMBL)
mastskeskskaLLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSrhlappsknYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPSHSSL
Low Complexity Region (SEG)
MAstskeskskalllsVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPSHSSL
Disordered region (IsUnstruct)
***********ALLLSVNLIFFIFLTSIPS*****PACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCIN*******
Disordered Region (DISOPRED)
************LLLSVNLIFFIFLT*************DNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPS****
Disordered Region (DISEMBL)
**********KALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPSHSSL
Disordered Region (DISPRO)
******ESKSKALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLP*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASTSKESKSKALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQCINLPSHSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P14009	137	14 kDa proline-rich prote	N/A	no	0.840	0.810	0.338	5e-09
Q8RW93	128	Putative lipid-binding pr	no	no	0.696	0.718	0.357	3e-07
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.643	0.245	0.377	5e-06
Q01595	129	Cortical cell-delineating	N/A	no	0.674	0.689	0.357	5e-05

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 31/142 (21%)

Query: 5   SKESKSKALLLSVNLIFFIFLTSIPSSAEEQP----------------------ACSDNF 42
           SK S S AL  ++N++FF  +    SS E+ P                       C  + 
Sbjct: 3   SKNSASVALFFTLNILFFALV----SSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDA 58

Query: 43  LELDVCVDVLEALSRH-LAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETI 101
           L+L VC DVL  +    +  P    CCSL+  LV LEA   CLCTA++ N+L   K   +
Sbjct: 59  LKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEA-AVCLCTAIKANILG--KNLNL 115

Query: 102 PSASLSLLWEYCESEIPSDFQC 123
           P A LSL+   C  ++P+ F+C
Sbjct: 116 PIA-LSLVLNNCGKQVPNGFEC 136

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.
Daucus carota (taxid: 4039)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 29  PSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTAL 88
           P + +    C  + L+  VC   L  +S  +  P    CCSLI  L + EA   CLCTAL
Sbjct: 37  PPAKQATTKCPRDTLKFGVCGSWLGLVSEVIGTPPSQECCSLIKGLADFEAA-VCLCTAL 95

Query: 89  EVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
           + ++L V   + IP A L+LL   C   +P  F C
Sbjct: 96  KTSILGVAPVK-IPVA-LTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 35  QPACSDNFLELDVCVDVLEALSRHLAPPS-KNYCCSLIGNLVELEAMGTCLCTALEVNVL 93
           QP C  + L+L  CVDVL  L       S K  CC L+G LV+L+A   CLCT + + +L
Sbjct: 258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDA-AICLCTTIRLKLL 316

Query: 94  DVIKQETIPSASLSLLWEYCESEIPSDFQC 123
           ++     I   +L +L + C    P DF+C
Sbjct: 317 NI---NIILPIALQVLIDDCGKYPPKDFKC 343

Solanum lycopersicum (taxid: 4081)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 31  SAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEV 90
           S+     C  + L+L VC  VL  +   L  P    CC L+  LV+L+A   CLCTA++ 
Sbjct: 41  SSHSHGRCPIDALKLKVCAKVLGLVKVGL--PQYEQCCPLLEGLVDLDA-ALCLCTAIKA 97

Query: 91  NVLDVIKQETIPSASLSLLWEYCESEIPSDFQCIN 125
           NVL +     +P  SL+ +   C    P DF C N
Sbjct: 98  NVLGI--HLNVP-LSLNFILNNCGRICPEDFTCPN 129

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
388497944	132	unknown [Lotus japonicus]	0.818	0.818	0.376	8e-13
18406723	134	protease inhibitor/seed storage/lipid tr	0.871	0.858	0.355	5e-12
15237964	127	bifunctional inhibitor/lipid-transfer pr	0.795	0.826	0.393	7e-12
21553657	127	extA [Arabidopsis thaliana]	0.795	0.826	0.393	7e-12
13661062	114	LEDI-2 protein [Lithospermum erythrorhiz	0.833	0.964	0.433	9e-12
255585177	137	14 kDa proline-rich protein DC2.15 precu	0.871	0.839	0.384	1e-11
224137832	132	predicted protein [Populus trichocarpa]	0.871	0.871	0.390	2e-11
357477499	123	Proline-rich protein [Medicago truncatul	0.818	0.878	0.371	3e-11
388518971	139	unknown [Lotus japonicus]	0.818	0.776	0.343	5e-11
224552010	135	hybrid proline-rich protein [Gossypium h	0.681	0.666	0.447	8e-11

>gi|388497944|gb|AFK37038.1| unknown [Lotus japonicus]

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 22/130 (16%)

Query: 12  ALLLSVNLIFFIFL---TSIPSS---------------AEEQPACSDNFLELDVCVDVLE 53
           A+LL++NL+FF  +   T++P S               + +QP+C  + ++L VC DVL 
Sbjct: 6   AILLALNLVFFFAVVSSTNVPCSPPTKGHKNTPSTKPPSTKQPSCPRDTIKLGVCADVLG 65

Query: 54  ALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYC 113
            ++  L  P K  CCSL+  LV+LEA   CLCTAL+ NVL +     I   +LSL+  YC
Sbjct: 66  LINVQLGKPPKTPCCSLLEGLVDLEA-AVCLCTALKANVLGINLNLPI---NLSLILNYC 121

Query: 114 ESEIPSDFQC 123
              +P  F C
Sbjct: 122 GKGVPKGFVC 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406723|ref|NP_566036.1| protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] gi|15983388|gb|AAL11562.1|AF424568_1 At2g45180/T14P1.1 [Arabidopsis thaliana] gi|2583134|gb|AAB82643.1| expressed protein [Arabidopsis thaliana] gi|21553826|gb|AAM62919.1| unknown [Arabidopsis thaliana] gi|56236110|gb|AAV84511.1| At2g45180 [Arabidopsis thaliana] gi|110739938|dbj|BAF01874.1| putative proline-rich protein [Arabidopsis thaliana] gi|110740479|dbj|BAF02133.1| putative proline-rich protein [Arabidopsis thaliana] gi|110742750|dbj|BAE99283.1| putative proline-rich protein [Arabidopsis thaliana] gi|115311435|gb|ABI93898.1| At2g45180 [Arabidopsis thaliana] gi|330255428|gb|AEC10522.1| protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 20/135 (14%)

Query: 5   SKESKSKALLLSVNLIFFIFLTSIPSSAEE----------------QPACSDNFLELDVC 48
           SK     ALL+++NL+FF F+TS                       +P C  + L+L VC
Sbjct: 3   SKALAVTALLITLNLLFFTFVTSTKCPPTTPKPPKTPKSPKKAPAVKPTCPTDTLKLGVC 62

Query: 49  VDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSL 108
            D+L  ++  +  P K  CC+L+  L  LEA   CLCTAL+ NVL +     +P   L+L
Sbjct: 63  ADLLGLVNVVVGSPPKTPCCTLLQGLANLEA-AVCLCTALKANVLGI--NLNVP-IDLTL 118

Query: 109 LWEYCESEIPSDFQC 123
           L  YC  ++P  FQC
Sbjct: 119 LLNYCGKKVPHGFQC 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237964|ref|NP_199500.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] gi|9759431|dbj|BAB10228.1| extensin-like protein [Arabidopsis thaliana] gi|26450171|dbj|BAC42204.1| putative extensin [Arabidopsis thaliana] gi|28973043|gb|AAO63846.1| putative extensin [Arabidopsis thaliana] gi|332008061|gb|AED95444.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 22/127 (17%)

Query: 12  ALLLSVNLIFFIFLTSI---------------PSSAEEQPACSDNFLELDVCVDVLEALS 56
           ALLL  N+IFF F++S                P++   +P C D  L+L VC +VL+ + 
Sbjct: 7   ALLLVFNVIFFTFVSSTSVPCPPPPPKSYHKKPATPSLKPTCKDA-LKLKVCANVLDVVK 65

Query: 57  RHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESE 116
             L PP+ N CC+LI  LV+LEA   CLCTAL+ NVL +     +P  SL+++  +C  +
Sbjct: 66  VSL-PPTSN-CCALIKGLVDLEA-AVCLCTALKANVLGI--NLNVP-ISLNVVLNHCGKK 119

Query: 117 IPSDFQC 123
           +PS F+C
Sbjct: 120 VPSGFKC 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553657|gb|AAM62750.1| extA [Arabidopsis thaliana]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 22/127 (17%)

Query: 12  ALLLSVNLIFFIFLTSI---------------PSSAEEQPACSDNFLELDVCVDVLEALS 56
           ALLL  N+IFF F++S                P++   +P C D  L+L VC +VL+ + 
Sbjct: 7   ALLLVFNVIFFTFVSSTSVPCPPPPPKSYHKKPATPSPKPTCKDA-LKLKVCANVLDLVK 65

Query: 57  RHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESE 116
             L PP+ N CC+LI  LV+LEA   CLCTAL+ NVL +     +P  SL+++  +C  +
Sbjct: 66  VSL-PPTSN-CCALIKGLVDLEA-AVCLCTALKANVLGI--NLNVP-ISLNVVLNHCGKK 119

Query: 117 IPSDFQC 123
           +PS F+C
Sbjct: 120 VPSGFKC 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13661062|dbj|BAB41107.1| LEDI-2 protein [Lithospermum erythrorhizon]

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 10/120 (8%)

Query: 6   KESKSKALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKN 65
               S A+LL++NLIFF  +T     A+    C  + L+L VC +VL  +  +L      
Sbjct: 2   ASRNSIAILLALNLIFFNLVT-----AQNITTCPVDTLQLGVCANVLGLIDLNLGRVPTQ 56

Query: 66  YCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYC--ESEIPSDFQC 123
            CCSL+GNLV LE +G CLCTAL++N+L++I   TIP  SLSLL   C     IPS + C
Sbjct: 57  PCCSLLGNLVALE-VGACLCTALDLNLLNLI-HLTIP-ISLSLLVNTCNINGTIPSGWSC 113

Source: Lithospermum erythrorhizon

Species: Lithospermum erythrorhizon

Genus: Lithospermum

Family: Boraginaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585177|ref|XP_002533292.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis] gi|223526876|gb|EEF29086.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 23/138 (16%)

Query: 5   SKESKSKALLLSVNLIFFIFLTSI--PSSAEE---------------QPA-CSDNFLELD 46
           S+   S A LLS+NL+FF  ++S   P SA +               +PA C  + L+L 
Sbjct: 3   SRTLASTAFLLSINLLFFTLVSSTYCPPSAPKGHAPHPIKPSPVPSSKPAKCPRDTLKLG 62

Query: 47  VCVDVL-EALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSAS 105
           VCVD+L + LS  +  P K  CCSLI +LV+LEA   CLCT ++ ++L +    ++P   
Sbjct: 63  VCVDLLKDLLSVTVGTPPKTPCCSLIADLVDLEA-AVCLCTTIKASLLGI--NLSVP-VD 118

Query: 106 LSLLWEYCESEIPSDFQC 123
           LSLL  YC  ++P  F+C
Sbjct: 119 LSLLLNYCGKKVPEGFKC 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137832|ref|XP_002326451.1| predicted protein [Populus trichocarpa] gi|222833773|gb|EEE72250.1| predicted protein [Populus trichocarpa]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 18/133 (13%)

Query: 5   SKESKSKALLLSVNLIFFIFLTSIPSS-------------AEEQPACSDNFLELDVCVDV 51
           SK + S AL L+VNL+FF  +T+  SS             +     C  + L+L VC D+
Sbjct: 3   SKSTTSLALFLAVNLLFFSLVTAKRSSCPPPPKPKPTPTPSPSGGKCPKDALKLGVCADL 62

Query: 52  LEA-LSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLW 110
           L + L+  +  P    CCSLI  L++LEA   CLCTA++ N+L +     IP  SLSLL 
Sbjct: 63  LGSLLNVTVGTPPVEPCCSLIQGLLDLEA-AVCLCTAIKANILGI--NLNIP-VSLSLLL 118

Query: 111 EYCESEIPSDFQC 123
             C  ++P DFQC
Sbjct: 119 NVCGKKVPKDFQC 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477499|ref|XP_003609035.1| Proline-rich protein [Medicago truncatula] gi|355510090|gb|AES91232.1| Proline-rich protein [Medicago truncatula] gi|388506146|gb|AFK41139.1| unknown [Medicago truncatula]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 12  ALLLSVNLIFFIFLTS--IP-------SSAEEQPACSDNFLELDVCVDVLEALSRHLAPP 62
           A+LL +N++FF  ++S  +P         + + P C  + ++  VC DVL  ++  L  P
Sbjct: 6   AMLLCLNILFFTVVSSTYVPCPPPPHKDHSHKHPTCPRDTIKFGVCADVLGLINVELGKP 65

Query: 63  SKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQ 122
            K  CCSLI +L  LEA   CLCTAL+ NVL +     I   +LSL+  YC   +P  F 
Sbjct: 66  PKTPCCSLIDDLANLEA-AVCLCTALKANVLGINLNLPI---NLSLVLNYCGKGVPKGFV 121

Query: 123 C 123
           C
Sbjct: 122 C 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518971|gb|AFK47547.1| unknown [Lotus japonicus]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 29/137 (21%)

Query: 12  ALLLSVNLIFFIFLTS--IP-----------------------SSAEEQPACSDNFLELD 46
           A+LL++N++FF  ++S  +P                         + +QP+C  + ++L 
Sbjct: 6   AILLTLNILFFTVVSSSYVPCPPPPKGHKTPPSTPVPNPPSTKPPSTKQPSCPRDTIKLG 65

Query: 47  VCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASL 106
           VC DVL  ++  L  P K  CCSL+  L +LEA   CLCTAL  NVL +     IP  +L
Sbjct: 66  VCADVLGLINVQLGKPPKTPCCSLLQGLADLEA-AVCLCTALRANVLGI--NLNIP-INL 121

Query: 107 SLLWEYCESEIPSDFQC 123
           SL+  YC   +P  F C
Sbjct: 122 SLILNYCGKGVPKGFVC 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224552010|gb|ACN54400.1| hybrid proline-rich protein [Gossypium hirsutum]

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 6/96 (6%)

Query: 29  PSSAEEQPA-CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTA 87
           P SA EQP  C  + L+L VC D+L ++ R +  PS+  CCSLI  L +L+A   CLCTA
Sbjct: 44  PPSAPEQPGTCPRDALKLGVCADLLGSV-RVVVGPSRTKCCSLISGLADLDA-AVCLCTA 101

Query: 88  LEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
           ++ NVL V     +P  SLSLL   CE ++P+ ++C
Sbjct: 102 IKANVLGV--NLNVP-VSLSLLLNSCEKQMPAGYKC 134

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2170972	127	AT5G46900 [Arabidopsis thalian	0.666	0.692	0.421	7.9e-14
TAIR|locus:2170962	127	AT5G46890 [Arabidopsis thalian	0.666	0.692	0.421	1e-13
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.780	0.768	0.373	1.3e-13
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.621	0.463	0.471	4.4e-13
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.628	0.515	0.443	9.1e-13
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.621	0.488	0.459	1.2e-12
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.621	0.450	0.459	1.2e-12
TAIR|locus:2008880	137	ELP "extensin-like protein" [A	0.689	0.664	0.406	3.1e-12
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.772	0.790	0.367	3.9e-12
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.772	0.790	0.367	3.9e-12

TAIR|locus:2170972 AT5G46900 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 40/95 (42%), Positives = 60/95 (63%)

Query:    29 PSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTAL 88
             P++   +P C D  L+L VC +VL+ +   L PP+ N CC+LI  LV+LEA   CLCTAL
Sbjct:    39 PATPSPKPTCKDA-LKLKVCANVLDLVKVSL-PPTSN-CCALIKGLVDLEA-AVCLCTAL 94

Query:    89 EVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
             + NVL +     +P  SL+++  +C  ++PS F+C
Sbjct:    95 KANVLGI--NLNVP-ISLNVVLNHCGKKVPSGFKC 126

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2170962 AT5G46890 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/95 (42%), Positives = 60/95 (63%)

Query:    29 PSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTAL 88
             P++   +P C D  L+L VC +VL+ +   L PP+ N CC+LI  LV+LEA   CLCTAL
Sbjct:    39 PATPSLKPTCKDA-LKLKVCANVLDVVKVSL-PPTSN-CCALIKGLVDLEA-AVCLCTAL 94

Query:    89 EVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
             + NVL +     +P  SL+++  +C  ++PS F+C
Sbjct:    95 KANVLGI--NLNVP-ISLNVVLNHCGKKVPSGFKC 126

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/123 (37%), Positives = 65/123 (52%)

Query:    17 VNLIFFIFLTSI------------PSSAEEQPA----CSDNFLELDVCVDVLEALSRHLA 60
             +NL+FF F+TS             P S ++ PA    C  + L+L VC D+L  ++  + 
Sbjct:    15 LNLLFFTFVTSTKCPPTTPKPPKTPKSPKKAPAVKPTCPTDTLKLGVCADLLGLVNVVVG 74

Query:    61 PPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSD 120
              P K  CC+L+  L  LEA   CLCTAL+ NVL +     +P   L+LL  YC  ++P  
Sbjct:    75 SPPKTPCCTLLQGLANLEA-AVCLCTALKANVLGI--NLNVP-IDLTLLLNYCGKKVPHG 130

Query:   121 FQC 123
             FQC
Sbjct:   131 FQC 133

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/87 (47%), Positives = 49/87 (56%)

Query:    38 CSDNFLELDVCVDVLEALSR-HLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVI 96
             C  + L L VC +VL  L    L  PS   CCSLI  LV+L+A   CLCTAL  NVL + 
Sbjct:    94 CPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDA-AICLCTALRANVLGI- 151

Query:    97 KQETIPSASLSLLWEYCESEIPSDFQC 123
                 +P  SLS+L   C   +PSDFQC
Sbjct:   152 -NLNVP-ISLSVLLNVCNRRLPSDFQC 176

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query:    37 ACSDNFLELDVCVDVLEALSR-HLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDV 95
             +C  + L+L VC +VL +L    L  PS   CCSLI  LV+++A   CLCTAL  NVL +
Sbjct:    77 SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDA-AICLCTALRANVLGI 135

Query:    96 IKQETIPSASLSLLWEYCESEIPSDFQC 123
                  +P  SLS+L   C  ++PS FQC
Sbjct:   136 --NLNVP-ISLSVLLNVCNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/87 (45%), Positives = 50/87 (57%)

Query:    38 CSDNFLELDVCVDVLEALSR-HLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVI 96
             C  + L L VC +VL +L    L  PS   CCSLI  LV+L+A   CLCTAL  NVL + 
Sbjct:    85 CPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDA-AICLCTALRANVLGI- 142

Query:    97 KQETIPSASLSLLWEYCESEIPSDFQC 123
                 +P  SLS+L   C  ++PS FQC
Sbjct:   143 -NLNVP-ISLSVLLNVCNRKVPSGFQC 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/87 (45%), Positives = 49/87 (56%)

Query:    38 CSDNFLELDVCVDVLEALSR-HLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVI 96
             C  + L L VC +VL  L    L  PS   CCSLI  LV+L+A   CLCTAL  NVL + 
Sbjct:    99 CPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDA-AVCLCTALRANVLGI- 156

Query:    97 KQETIPSASLSLLWEYCESEIPSDFQC 123
                 +P  SLS+L   C   +PS+FQC
Sbjct:   157 -NLNVP-ISLSVLLNVCNRRLPSNFQC 181

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2008880 ELP "extensin-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 39/96 (40%), Positives = 51/96 (53%)

Query:    29 PSSAEEQPACSDNFLELDVCVDVLEAL-SRHLAPPSKNYCCSLIGNLVELEAMGTCLCTA 87
             PS +     C  + L+L VC +VL  L    L  P    CCSLI  L ++EA   CLCTA
Sbjct:    46 PSPSSGSSKCPKDTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEA-AVCLCTA 104

Query:    88 LEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
             L+ N+L +     +P  SLSLL   C  ++P  FQC
Sbjct:   105 LKANILGI--NLNLP-ISLSLLLNVCSKQLPPGFQC 137

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/117 (36%), Positives = 59/117 (50%)

Query:    18 NLIFFIFLTSIPSSAEEQP----------ACSDNFLELDVCVDVLEALSR-HLAPPSKNY 66
             N++FF   T+        P          +C  + L+L VC +VL+ L +  L  P    
Sbjct:    16 NILFFTLTTACGGGCSSTPKPKPKPKSTGSCPKDTLKLGVCANVLKDLLKIQLGTPPVKP 75

Query:    67 CCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
             CCSL+  LV+LEA   CLCTAL+  VL +     +P  SLSLL   C  ++PS F C
Sbjct:    76 CCSLLNGLVDLEA-AACLCTALKAKVLGI--NLNVP-VSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/117 (36%), Positives = 59/117 (50%)

Query:    18 NLIFFIFLTSIPSSAEEQP----------ACSDNFLELDVCVDVLEALSR-HLAPPSKNY 66
             N++FF   T+        P          +C  + L+L VC +VL+ L +  L  P    
Sbjct:    16 NILFFTLTTACGGGCSSTPKPKPKPKSTGSCPKDTLKLGVCANVLKDLLKIQLGTPPVKP 75

Query:    67 CCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPSDFQC 123
             CCSL+  LV+LEA   CLCTAL+  VL +     +P  SLSLL   C  ++PS F C
Sbjct:    76 CCSLLNGLVDLEA-AACLCTALKAKVLGI--NLNVP-VSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G45180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN- lipid binding; INVOLVED IN- lipid transport; LOCATED IN- chloroplast thylakoid membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro-IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro-IPR003612), Plant lipid transfer protein and hydrophobic protein, [...] (134 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G40765	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (57 aa)							•		0.880
	AT3G07810	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; heterogeneous nuclear ribo [...] (495 aa)							•		0.782
	AT4G29480	mitochondrial ATP synthase g subunit family protein; mitochondrial ATP synthase g subunit famil [...] (122 aa)							•		0.718
	AT4G26210	mitochondrial ATP synthase g subunit family protein; mitochondrial ATP synthase g subunit famil [...] (122 aa)							•		0.718
	AT2G19680	mitochondrial ATP synthase g subunit family protein; mitochondrial ATP synthase g subunit famil [...] (122 aa)							•		0.718
	BZIP30	bZIP family transcription factor; bZIP family transcription factor; FUNCTIONS IN- transcription [...] (525 aa)							•		0.679
	PSBY	PSBY; PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts wh [...] (189 aa)				•					0.653
	F28P22.20	GER1 (GERMIN-LIKE PROTEIN 1); oxalate oxidase; germin-like protein (GLP1) ; May play a role in [...] (208 aa)				•					0.635
	LHCA3	LHCA3; chlorophyll binding; PSI type III chlorophyll a/b-binding protein (Lhca3*1) (273 aa)				•					0.629
	ELP	ELP (EXTENSIN-LIKE PROTEIN); lipid binding; extensin-like protein (ELP) (137 aa)				•				•	0.629

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	3e-14

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 62.7 bits (153), Expect = 3e-14
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 36  PACSDNFLELDVCVDVLEALSRHLAP-PSKNYCCSLIGNLVELEAMGTCLCTALEVNVLD 94
           P C  + L+L VC +VL  LS  L   P+   CC LIG L +L+A   CLCTA++ N+L 
Sbjct: 2   PTCPRDALKLGVCANVL-GLSLLLLGTPAVQPCCPLIGGLADLDA-AVCLCTAIKANILG 59

Query: 95  VIKQETIPSASLSLLWEYCESEIPSDFQC 123
           +         +LSLL   C   +P  F C
Sbjct: 60  IS---INIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.92
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	96.78
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	96.78
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	95.85
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	92.14
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	90.56
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.26
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	80.4

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=6.3e-38  Score=222.56  Aligned_cols=84  Identities=42%  Similarity=0.882  Sum_probs=82.4

Q ss_pred             CCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCC
Q 040200           36 PACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCES  115 (132)
Q Consensus        36 ~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk  115 (132)
                      ++||+|++|||+|+|||+++++.+|.|+.++|||+|+||+|+|| |+|||||+|+|+||| ++ |+| +++++++|+|||
T Consensus         2 ~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldA-A~CLCtaikan~lgi-~~-~~p-v~l~llln~CGk   77 (85)
T cd01958           2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDA-AVCLCTAIKANILGI-SI-NIP-VALSLLLNSCGR   77 (85)
T ss_pred             CCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhhe-eeeeeeeeeccccCc-cc-ccC-hhHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999 999999999999998 99 999 999999999999


Q ss_pred             CCCCCccc
Q 040200          116 EIPSDFQC  123 (132)
Q Consensus       116 ~~P~gF~C  123 (132)
                      ++|+||+|
T Consensus        78 ~~P~gf~C   85 (85)
T cd01958          78 NVPPGFTC   85 (85)
T ss_pred             cCCCCCcC
Confidence            99999998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=2.1e-37  Score=219.50  Aligned_cols=85  Identities=41%  Similarity=0.862  Sum_probs=82.7

Q ss_pred             CCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCC
Q 040200           37 ACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESE  116 (132)
Q Consensus        37 ~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~  116 (132)
                      +||+|++|||+|+||||++++.+|.|++++|||+|+||+|+|| |+|||||+|+|++|++++ ++| +++++++|.|||+
T Consensus         1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~A-A~CLC~aika~vlg~i~~-~ip-v~l~~lln~CGk~   77 (85)
T PF14547_consen    1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDA-AVCLCTAIKANVLGLINV-NIP-VALNLLLNACGKT   77 (85)
T ss_pred             CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchH-HHHHHHHHhhhccccccc-ccc-cHHHHHHHHhCCc
Confidence            6999999999999999999999999999999999999999999 999999999999995599 999 9999999999999


Q ss_pred             CCCCcccC
Q 040200          117 IPSDFQCI  124 (132)
Q Consensus       117 ~P~gF~C~  124 (132)
                      +|+||+|+
T Consensus        78 ~p~gf~C~   85 (85)
T PF14547_consen   78 VPSGFTCP   85 (85)
T ss_pred             CcCCCcCC
Confidence            99999996

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.92  E-value=0.00019  Score=48.93  Aligned_cols=58  Identities=22%  Similarity=0.476  Sum_probs=34.2

Q ss_pred             cCCCCCCccccccccccccccchhhhhHhhhccc-ccccccCCCCcchHHHHHHHhCCCCCCCccc
Q 040200           59 LAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNV-LDVIKQETIPSASLSLLWEYCESEIPSDFQC  123 (132)
Q Consensus        59 lg~p~~~~CCsli~gL~dldA~avCLCtAikanv-LgI~~l~~ip~v~l~llln~CGk~~P~gF~C  123 (132)
                      -+.+|..+||.-++.+.+.|  ..|||..++... .++ .+ |.  -....|-..||...|. ++|
T Consensus        38 ~~~~Ps~~CC~~l~~~~~~~--~~ClC~~~~~~~~~~~-~i-n~--~~a~~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   38 GGPAPSAACCSALKSVVQAD--PPCLCQLLNSPGAPGF-GI-NV--TRALALPAACGVPVPP-SKC   96 (96)
T ss_dssp             C-----HHHHHHHCC----H--CCHHHCCCC-CCHCHH-CC-TC--HHHHHHHHHCTSS-S-----
T ss_pred             CCCCCCHHHHHHHHHhccCC--CCCHHHhcCccccccC-Cc-CH--HHHHHHHHHcCCCCCC-CCC
Confidence            35667789999999998754  599999999976 444 44 54  3666788999999998 887

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=96.78  E-value=0.00084  Score=42.98  Aligned_cols=77  Identities=27%  Similarity=0.516  Sum_probs=51.7

Q ss_pred             CCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccC--CCCcchHHHHHHHhCC
Q 040200           38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQE--TIPSASLSLLWEYCES  115 (132)
Q Consensus        38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~--~ip~v~l~llln~CGk  115 (132)
                      |.....++..|.+.+....  -..++.++||.-+.++.   . ..|+|.+++....++ ..+  ..+ .....|-+.||.
T Consensus         1 C~~~~~~~~~c~~~~~~~~--~~~~p~~~CC~~l~~~~---~-~~C~C~~~~~~~~~~-~~~~~~~~-~~a~~lp~~C~~   72 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGS--PGAPPSQQCCSQLRGLN---S-AQCRCLALRAAVLGI-LEIPGVNA-QNAASLPSACGV   72 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCC--CCCCCchHHHHHHHHhc---c-cCCcchhhhcccccc-cchhhhhH-HHHHhhHHhcCC
Confidence            4445556667777752110  12456688999999998   4 689999999987665 210  012 567788899999


Q ss_pred             CCCCCccc
Q 040200          116 EIPSDFQC  123 (132)
Q Consensus       116 ~~P~gF~C  123 (132)
                      ..|. +.|
T Consensus        73 ~~~~-~~C   79 (79)
T smart00499       73 PPPY-TDC   79 (79)
T ss_pred             CCCC-CCC
Confidence            9876 544

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=96.78  E-value=0.001  Score=44.81  Aligned_cols=67  Identities=22%  Similarity=0.441  Sum_probs=48.5

Q ss_pred             cccchhHHHhHHHHhhhhcCC---CCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCC
Q 040200           41 NFLELDVCVDVLEALSRHLAP---PSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEI  117 (132)
Q Consensus        41 d~lkL~vCanVL~l~~~~lg~---p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~  117 (132)
                      |..+|..|...+     .-|.   +|.+.||+-|+.+   |.  .|+|..++.....+|   |.  -....|-..||..+
T Consensus         4 ~~~~L~~C~~yl-----~~~~~~~~Ps~~CC~~vk~~---~~--~C~C~~~~~~~~~~i---~~--~~a~~Lp~~Cgv~~   68 (73)
T cd04660           4 DLDLLAECQPYV-----TGPNPPPPPSRECCAALRRA---DL--PCLCRYKTSLVLQII---DP--DKAVYLPAKCGLPL   68 (73)
T ss_pred             CHHHHHHHHHHH-----cCCCCCCCCCHHHHHHHHcC---Cc--CCEeeccCCCccccc---CH--HHHHHHHHHcCCCC
Confidence            344677888875     1122   3567899999974   44  399999988766532   43  46778899999999


Q ss_pred             CCCccc
Q 040200          118 PSDFQC  123 (132)
Q Consensus       118 P~gF~C  123 (132)
                      |. ++|
T Consensus        69 p~-~~C   73 (73)
T cd04660          69 PP-SSC   73 (73)
T ss_pred             CC-CCC
Confidence            99 987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=95.85  E-value=0.0034  Score=42.43  Aligned_cols=62  Identities=19%  Similarity=0.449  Sum_probs=46.2

Q ss_pred             cchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCCC
Q 040200           43 LELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPS  119 (132)
Q Consensus        43 lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P~  119 (132)
                      .+|..|...+     ..|.+|+.+||.-|..     + .-|||.-+|...++. .+ |.|  .-.-|.+.||..+|.
T Consensus         4 ~~L~~C~~ai-----~~~~~Ps~~CC~~Lk~-----~-~~CLC~y~~~p~l~~-~i-~~~--~A~~l~~~Cgv~~P~   65 (66)
T cd01959           4 TQLSPCLPAI-----LGGSPPSAACCAKLKE-----Q-QSCLCQYAKNPSLKQ-YV-NSP--NARKVLAACGVPYPN   65 (66)
T ss_pred             hhcccCHHHH-----hCCCCCCHHHHHHHhc-----C-CCCeeeeecCccHHh-hc-CcH--HHHHHHHHcCCCCCC
Confidence            4678888864     2467889999999986     3 469999998876774 34 555  455678899999874

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=92.14  E-value=0.025  Score=38.38  Aligned_cols=68  Identities=24%  Similarity=0.446  Sum_probs=47.4

Q ss_pred             ccchhHHHhHHHHhhhhcC-CCCCCccccccccccccccchhhhhHhhhccccccc----------ccCCCCcchHHHHH
Q 040200           42 FLELDVCVDVLEALSRHLA-PPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVI----------KQETIPSASLSLLW  110 (132)
Q Consensus        42 ~lkL~vCanVL~l~~~~lg-~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~----------~l~~ip~v~l~lll  110 (132)
                      ...+..|...+.     -+ .++.+.||.-|+++    - ..|.|.+||..+.++.          .+ +.  -....|-
T Consensus        12 ~~~l~~c~~~~~-----~~~~~~~~~CC~~L~~l----~-~~C~C~~i~~~~~~~~~q~~~~~~~~~~-~~--~~a~~LP   78 (90)
T PF00234_consen   12 QVRLSPCLPYLQ-----GGCQQPSQQCCQQLRQL----D-PQCRCEAIRQMVRQVIQQQQQGGQEMQI-MA--QRAQNLP   78 (90)
T ss_dssp             SSHHHGGHHHHT-----TSSSHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHSHHCTSTCSHHHHH-HH--HHHHHHH
T ss_pred             cccccccHHHHh-----cccccchHHHhHHHHHH----h-HHhhCHHHHHHHHhhhhhhhhhHHHHHH-HH--HHHHHHH
Confidence            355777777752     11 23467899999998    3 7999999998887631          12 22  4677788


Q ss_pred             HHhCCCCCCCccc
Q 040200          111 EYCESEIPSDFQC  123 (132)
Q Consensus       111 n~CGk~~P~gF~C  123 (132)
                      +.||..+|. |.|
T Consensus        79 ~~C~v~~~~-~~C   90 (90)
T PF00234_consen   79 SMCNVSPPY-TDC   90 (90)
T ss_dssp             HHTTSSSSS-S-G
T ss_pred             HHCCCCCCC-CCC
Confidence            999999987 555

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=90.56  E-value=0.11  Score=33.13  Aligned_cols=50  Identities=22%  Similarity=0.366  Sum_probs=33.5

Q ss_pred             CCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhC
Q 040200           61 PPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCE  114 (132)
Q Consensus        61 ~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CG  114 (132)
                      .+|..+||+-++.+.+.|.  .|||..+|...... .. .+..-....|-..||
T Consensus        13 ~~Ps~~CC~~l~~~~~~~~--~ClC~~~~~~~~~~-~~-~~~~~~a~~LP~~Cg   62 (63)
T cd00010          13 TAPPSDCCSGLKSVVKSDP--KCLCAALNGPGASL-LG-LKNATRALALPAACG   62 (63)
T ss_pred             CCCChHHHHHHHHHHhcCh--hhHHHHHcCccccc-cC-cccHHHHHhchHhcC
Confidence            3567889999999988766  79999999865442 11 111034555666666

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.26  E-value=0.28  Score=35.37  Aligned_cols=25  Identities=28%  Similarity=0.188  Sum_probs=14.6

Q ss_pred             CCCCccchhHHHHHHHHHHHHHHHhhc
Q 040200            1 MASTSKESKSKALLLSVNLIFFIFLTS   27 (132)
Q Consensus         1 MAsk~~~~~s~Al~L~lnllff~~~s~   27 (132)
                      ||||+.  -.+++||++-||+++-+++
T Consensus         1 MaSK~~--llL~l~LA~lLlisSevaa   25 (95)
T PF07172_consen    1 MASKAF--LLLGLLLAALLLISSEVAA   25 (95)
T ss_pred             CchhHH--HHHHHHHHHHHHHHhhhhh
Confidence            999863  3445555555555555554

Some of them may be involved in resistance to environmental stress [].

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=80.40  E-value=1  Score=30.85  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             ccchhHHHhHHHHhhhhcCCCCCCcccccccccccc----ccchhhhhHhhhcccccccc-cCCCCcchHHHHHHHhCCC
Q 040200           42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL----EAMGTCLCTALEVNVLDVIK-QETIPSASLSLLWEYCESE  116 (132)
Q Consensus        42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl----dA~avCLCtAikanvLgI~~-l~~ip~v~l~llln~CGk~  116 (132)
                      ..+|.-|.+.+.    .-+..|..+||.-++.|.+.    +- ..|+|.-+|....++ . + |.  -.+..|=..||-+
T Consensus         7 ~~~l~~C~~y~~----g~~~~Ps~~CC~~v~~l~~~~~t~~~-~~~~C~C~~~~~~~~-~~i-~~--~~a~~LP~~C~v~   77 (89)
T cd01960           7 TSLLAPCLGYLT----GGGPAPSPACCSGVKSLNGLAKTTAD-RQAACNCLKSAAAGI-SGL-NP--GRAAGLPGKCGVS   77 (89)
T ss_pred             HhhHHhHHHHHh----CCCCCCChHHhhhhHHHhhccCCCCc-hhhhhhccccccccc-CCC-CH--HHHHhChHhcccC
Confidence            346777888763    11235678899999998654    11 246666676655554 2 2 32  3455566789987


Q ss_pred             CC
Q 040200          117 IP  118 (132)
Q Consensus       117 ~P  118 (132)
                      .|
T Consensus        78 ~~   79 (89)
T cd01960          78 IP   79 (89)
T ss_pred             CC
Confidence            65

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 35  QPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLD 94
           +P+C D    L +C+++L          + + CC+LIG L ++EA   CLC  L    + 
Sbjct: 5   RPSCPD----LSICLNILGGS-----LGTVDDCCALIGGLGDIEA-IVCLCIQLRALGIL 54

Query: 95  VIKQETIPSASLSLLWEYCESEIPSDFQC 123
            +      + +L L+   C    PS+  C
Sbjct: 55  NL------NRNLQLILNSCGRSYPSNATC 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 41/142 (28%)

Query: 7   ESKSKALLLSVNLIFFIFLTSIPSSAEEQPACSDNFLELDVCVDVL-EALSRHLAPPSKN 65
             + K+LLL        +L   P     +   + N   L +  + + + L+        N
Sbjct: 300 PDEVKSLLLK-------YLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLAT-----WDN 346

Query: 66  YCCSLIGNLVELEAMGTCLCTALEVNVLD-----------VI--KQETIPSASLSLLWEY 112
           +        V  + + T + ++L  NVL+            +      IP+  LSL+W  
Sbjct: 347 W------KHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 113 CESEIPSDF--QCINLPSHSSL 132
                      +        SL
Sbjct: 399 VIKSDVMVVVNKLHK----YSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.96
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	96.07
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	95.59
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	94.84
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	92.88
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	92.04
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	86.98
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	86.49
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	85.99
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	81.73

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.96  E-value=1.4e-30  Score=182.34  Aligned_cols=75  Identities=33%  Similarity=0.810  Sum_probs=66.2

Q ss_pred             CCCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhC
Q 040200           35 QPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCE  114 (132)
Q Consensus        35 ~~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CG  114 (132)
                      +++||    |||+|+||||.   .+|  +.++|||+|+||+|+|| |+|||||+|+  |||  + |+| +++++|+|+||
T Consensus         5 ~~~CP----kLgvCanvL~g---~~~--~~~~CC~Ll~GL~dleA-AvCLCtaik~--Lgi--l-nlp-v~L~llln~Cg   68 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGG---SLG--TVDDCCALIGGLGDIEA-IVCLCIQLRA--LGI--L-NLN-RNLQLILNSCG   68 (80)
T ss_dssp             -CCSC----CCGGGGGGGGT---CCT--THHHHHHHHHTSCHHHH-HHHHHHHHHH--HTC--S-CHH-HHHHHHHHHTT
T ss_pred             CCCCC----chhHHHHHhCc---CCC--CCCccchhhhCcchhhh-hhhhhhhccc--cce--e-ecC-hhHHHHHHHhC
Confidence            47899    89999999962   122  66899999999999999 9999999995  897  5 889 99999999999


Q ss_pred             CCCCCCcccCC
Q 040200          115 SEIPSDFQCIN  125 (132)
Q Consensus       115 k~~P~gF~C~~  125 (132)
                      |++|+||+|+.
T Consensus        69 k~~P~gF~C~~   79 (80)
T 1hyp_A           69 RSYPSNATCPR   79 (80)
T ss_dssp             CSSCCCCCCSC
T ss_pred             CcCcCCCCCCC
Confidence            99999999984

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=96.07  E-value=0.0024  Score=41.82  Aligned_cols=60  Identities=17%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             chhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200           44 ELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP  118 (132)
Q Consensus        44 kL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P  118 (132)
                      +|..|...+     .-|.+|..+||+-+++     . ..|+|..+|...++. .| |.+  ...-|...||..+|
T Consensus         6 ~L~pC~~~v-----~~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~~-~i-n~~--~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAI-----LSGAKPSGECCGNLRA-----Q-QGCFCQYAKDPTYGQ-YI-RSP--HARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHH-----TTCCCCCHHHHHHHHH-----H-SSHHHHGGGCSTTHH-HH-TCH--HHHHHHHHHTSCCS
T ss_pred             hcccCHHHH-----cCCCCCCHHHHHhhCC-----C-CCCCCccccCccccc-cc-CHH--HHHHHHHHcCCCCC
Confidence            678898876     2355677889999985     4 679999998766653 34 554  44557789999988

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=95.59  E-value=0.0049  Score=40.93  Aligned_cols=70  Identities=19%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             CCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhh---cccccccccCCCCcchHHHHHHH
Q 040200           36 PACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALE---VNVLDVIKQETIPSASLSLLWEY  112 (132)
Q Consensus        36 ~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAik---anvLgI~~l~~ip~v~l~llln~  112 (132)
                      ..|-.+..+|..|...+.   ..-+.+|...||+-+++ +|    ..|||..++   +.-+||    |.+  ...-|-..
T Consensus         3 ~~C~~~~~~L~pC~~yv~---~~~~~~Ps~~CC~~lk~-~~----~~ClC~~~~~~~~~~~gi----n~~--~A~~LP~~   68 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVS---KENPTSPSQPCCTALQH-AD----FACLCGYKNSPWLGSFGV----DPE--LASALPKQ   68 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGB---SSSCCCCCHHHHHHHTT-CC----HHHHHTTTTCHHHHHHTB----CHH--HHHHHHHH
T ss_pred             chHHhHHHhHhhCHHHHc---CCCCCCCCHHHHHHHHh-cC----cCCcCcccCCcchhhcCc----CHH--HHHHHHHH
Confidence            568788888989988751   00014567789999998 23    379999888   443455    433  44557789


Q ss_pred             hCCCCCC
Q 040200          113 CESEIPS  119 (132)
Q Consensus       113 CGk~~P~  119 (132)
                      ||..+|.
T Consensus        69 Cgv~~p~   75 (77)
T 2rkn_A           69 CGLANAP   75 (77)
T ss_dssp             TTCSCCC
T ss_pred             cCCCCCC
Confidence            9999864

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=94.84  E-value=0.0025  Score=41.96  Aligned_cols=61  Identities=18%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             cchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200           43 LELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP  118 (132)
Q Consensus        43 lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P  118 (132)
                      -+|..|...+     .-|.+|..+||+-+++     . ..|+|..+|...++. .| |.+ .+. -|...||..+|
T Consensus         6 ~~L~pC~~~v-----~~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~~-~i-n~~-~A~-~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAI-----AGGARPTAACCSSLRA-----Q-QGCFCQFAKDPRYGR-YV-NSP-NAR-KAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHH-----TTCCSTTHHHHHHHHH-----H-HHHHHHHTTCSSHHH-HT-TTT-TGG-GCCCCCSSCSC
T ss_pred             hhcccCHHHH-----cCCCCCCHHHHHhhCC-----C-CCCCCccccCccccc-cc-CHH-HHH-HHHHHcCCCCC
Confidence            3678898886     2255677889999985     4 789999998765653 34 554 333 36678999887

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=92.88  E-value=0.0097  Score=40.92  Aligned_cols=69  Identities=22%  Similarity=0.355  Sum_probs=45.9

Q ss_pred             CCccccchhHHHhHHHHhhhhcCCCCCCcccccccccc-------ccccchhhhhHhhhcccc-cccccCCCCcchHHHH
Q 040200           38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLV-------ELEAMGTCLCTALEVNVL-DVIKQETIPSASLSLL  109 (132)
Q Consensus        38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~-------dldA~avCLCtAikanvL-gI~~l~~ip~v~l~ll  109 (132)
                      |.....+|.-|.+.+.     -|.++..+||+-+++|.       |-++  .|+|...++.-+ ||    |.+  ....|
T Consensus         4 C~~v~~~L~pCl~y~~-----~~~~p~~~CC~~lk~l~~~a~t~~d~~~--~ClC~~~~~~~~~~i----n~~--~A~~L   70 (92)
T 2alg_A            4 CGQVSSSLAPCIPYVR-----GGGAVPPACCNGIRNVNNLARTTPDRQA--ACNCLKQLSASVPGV----NPN--NAAAL   70 (92)
T ss_dssp             HHHHHHHHGGGHHHHH-----HCSCCCHHHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHSTTC----CHH--HHHHH
T ss_pred             hHHHHHhccCcHHHHc-----CCCCCCHHHHHHHHHHHhhhcccCCCCc--CCccccCcccccCcc----ChH--HHHHH
Confidence            3333446777888762     13345568999999987       4333  799987666656 55    433  44557


Q ss_pred             HHHhCCCCCC
Q 040200          110 WEYCESEIPS  119 (132)
Q Consensus       110 ln~CGk~~P~  119 (132)
                      -..||-.+|-
T Consensus        71 P~~Cgv~~p~   80 (92)
T 2alg_A           71 PGKCGVSIPY   80 (92)
T ss_dssp             HHHTTCCCSS
T ss_pred             HHHcCCCCCC
Confidence            7899998763

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=92.04  E-value=0.065  Score=36.64  Aligned_cols=72  Identities=18%  Similarity=0.391  Sum_probs=46.0

Q ss_pred             CCCccccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHH
Q 040200           37 ACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLW  110 (132)
Q Consensus        37 ~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~lll  110 (132)
                      +|.....+|.-|.+.+.     -|.+|...||+-+++|.+.     |--+.|+|..-.+.-+ ||    |.+  ...-|-
T Consensus         2 ~C~~v~~~L~pCl~yv~-----~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~i----n~~--~A~~LP   70 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQ-----KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI----NPN--NAEALP   70 (91)
T ss_dssp             CTTTTHHHHHHHHHHHT-----SCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSC----CHH--HHHHHH
T ss_pred             CHHHHHHhccCcHHHHh-----CCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCc----CHH--HHHHHH
Confidence            36556667888998862     2344677899999998643     2114799973333334 44    333  345577


Q ss_pred             HHhCCCCCC
Q 040200          111 EYCESEIPS  119 (132)
Q Consensus       111 n~CGk~~P~  119 (132)
                      ..||..+|-
T Consensus        71 ~~Cgv~~p~   79 (91)
T 1siy_A           71 GKCGVNIPY   79 (91)
T ss_dssp             HHHTCCCSS
T ss_pred             HHcCCCCCC
Confidence            899998763

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=86.98  E-value=0.069  Score=36.49  Aligned_cols=67  Identities=15%  Similarity=0.300  Sum_probs=41.3

Q ss_pred             ccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHHHHhCC
Q 040200           42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLWEYCES  115 (132)
Q Consensus        42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~llln~CGk  115 (132)
                      ..+|.-|.+.+.     -|.+|..+||.-+++|...     |--+.|+|..-.+.-+ ||    |.+  ....|-..||-
T Consensus         7 ~~~L~pCl~y~~-----~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~i----n~~--~A~~LP~~C~v   75 (90)
T 1bwo_A            7 DSLVRPCLSYVQ-----GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL----NED--NARSIPPKCGV   75 (90)
T ss_dssp             HHHHGGGHHHHT-----TCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTC----CHH--HHHTHHHHHTC
T ss_pred             HHhhcccHHHHc-----CCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCc----CHH--HHHHHHHHcCC
Confidence            446777877762     2334677899999998732     1014799953333334 44    333  34457789999


Q ss_pred             CCCC
Q 040200          116 EIPS  119 (132)
Q Consensus       116 ~~P~  119 (132)
                      .+|-
T Consensus        76 ~~p~   79 (90)
T 1bwo_A           76 NLPY   79 (90)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            8763

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=86.49  E-value=0.095  Score=35.92  Aligned_cols=71  Identities=15%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             CCccccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHHH
Q 040200           38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLWE  111 (132)
Q Consensus        38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~llln  111 (132)
                      |.....+|.-|.+.+.    .-+.+|..+||+-+++|...     |--+.|+|....+.-+ ||    |..  ....|=.
T Consensus         4 C~~v~~~L~pCl~y~~----~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~i----n~~--~A~~LP~   73 (93)
T 1afh_A            4 CGQVASAIAPCISYAR----GQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL----NAG--NAASIPS   73 (93)
T ss_dssp             SHHHHHHHGGGHHHHT----TSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTC----CHH--HHHHHHH
T ss_pred             hHHHHHhccCcHHHHc----CCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCc----CHH--HHHHHHH
Confidence            5444557788888862    11334566899999998521     1013799976555444 44    333  3444778


Q ss_pred             HhCCCCC
Q 040200          112 YCESEIP  118 (132)
Q Consensus       112 ~CGk~~P  118 (132)
                      .||-.+|
T Consensus        74 ~C~v~~p   80 (93)
T 1afh_A           74 KCGVSIP   80 (93)
T ss_dssp             HHHCCCS
T ss_pred             HcCCCCC
Confidence            8999875

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=85.99  E-value=0.18  Score=34.85  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=47.3

Q ss_pred             ccchhHHHhHHHHhhhhcCCCCCCcccccccccccccc---chhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200           42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEA---MGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP  118 (132)
Q Consensus        42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA---~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P  118 (132)
                      ...|.-|.+.+.     -|..|..+||.=+++|.+.--   -..|+|..+|...-++..+ |.  -...-|=..||-++|
T Consensus         8 ~~~L~pCl~Yv~-----g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~i-n~--~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            8 TSDLSPCLTYLT-----GGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKL-NT--NNAAALPGKCGVNIP   79 (93)
T ss_dssp             HHHHHHHHHHHT-----TSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTC-CH--HHHHHHHHHHTCCCS
T ss_pred             HHHHHhHHHHHc-----CCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCc-CH--HHHHhhhHhcCCCCC
Confidence            345666777651     144466789998888865311   0258888888654332123 33  245557789999998


Q ss_pred             ----CCcccCC
Q 040200          119 ----SDFQCIN  125 (132)
Q Consensus       119 ----~gF~C~~  125 (132)
                          +.+.|..
T Consensus        80 ~~Is~~~dC~~   90 (93)
T 2ljo_A           80 YKISTTTNCNT   90 (93)
T ss_dssp             SCCSTTCCGGG
T ss_pred             CCCCCCCCCCC
Confidence                6777754

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=81.73  E-value=0.28  Score=33.51  Aligned_cols=69  Identities=22%  Similarity=0.440  Sum_probs=42.2

Q ss_pred             CCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccc-----cchhhhhHhhhcccc-cccccCCCCcchHHHHHH
Q 040200           38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELE-----AMGTCLCTALEVNVL-DVIKQETIPSASLSLLWE  111 (132)
Q Consensus        38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dld-----A~avCLCtAikanvL-gI~~l~~ip~v~l~llln  111 (132)
                      |-....+|.-|.+.+.    . |.+|. .||+-+++|...-     --+.|+|..--++-+ ||    |..  ....|-.
T Consensus         4 C~~v~~~L~pCl~y~~----~-~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~i----n~~--~A~~LP~   71 (91)
T 1t12_A            4 CGQVTSNLAPCLAYLR----N-TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGI----NLG--KAAGLPS   71 (91)
T ss_dssp             HHHHHHHTHHHHHHHT----T-SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTC----CHH--HHHHHHH
T ss_pred             hHHHHHhccCcHHHHc----C-CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCc----Chh--HHHHHHH
Confidence            4444456777888762    1 22355 8999999987531     014899963333334 44    332  3445778


Q ss_pred             HhCCCCC
Q 040200          112 YCESEIP  118 (132)
Q Consensus       112 ~CGk~~P  118 (132)
                      .||-.+|
T Consensus        72 ~C~v~~p   78 (91)
T 1t12_A           72 TCGVNIP   78 (91)
T ss_dssp             HTTCCCS
T ss_pred             HcCCCCC
Confidence            9999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	7e-11

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 52.4 bits (126), Expect = 7e-11
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 45  LDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSA 104
           L +C+++L          + + CC+LIG L ++EA   CLC  L    +  +        
Sbjct: 6   LSICLNILGGSL-----GTVDDCCALIGGLGDIEA-IVCLCIQLRALGILNLN------R 53

Query: 105 SLSLLWEYCESEIPSDFQC 123
           +L L+   C    PS+  C
Sbjct: 54  NLQLILNSCGRSYPSNATC 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	91.36
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	91.08
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	90.82
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	82.63

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.96  E-value=6.8e-32  Score=185.39  Aligned_cols=75  Identities=31%  Similarity=0.720  Sum_probs=66.5

Q ss_pred             CCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCC
Q 040200           36 PACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCES  115 (132)
Q Consensus        36 ~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk  115 (132)
                      ++||    |||+|+||||++     .++.++|||+|+||+|+|| |+||||||||+  |+  + |+| |++++|+|+|||
T Consensus         1 PtCP----Klg~C~nvLg~~-----~~~~~~CC~Ll~GL~dleA-AvCLCtaika~--~l--l-nvp-v~l~llln~Cgk   64 (75)
T d1hypa_           1 PSCP----DLSICLNILGGS-----LGTVDDCCALIGGLGDIEA-IVCLCIQLRAL--GI--L-NLN-RNLQLILNSCGR   64 (75)
T ss_dssp             CCSC----CCGGGGGGGGTC-----CTTHHHHHHHHHTSCHHHH-HHHHHHHHHHH--TC--S-CHH-HHHHHHHHHTTC
T ss_pred             CCCC----chhhHHHHhcCc-----cCCCCCcchHHhhHHHHHH-HHHHHHHHHHh--hh--c-ccc-chHHHHHHHcCC
Confidence            5799    899999999842     2567899999999999999 99999999995  44  4 889 999999999999


Q ss_pred             CCCCCcccCCC
Q 040200          116 EIPSDFQCINL  126 (132)
Q Consensus       116 ~~P~gF~C~~~  126 (132)
                      ++|+||+||+.
T Consensus        65 ~~P~gF~CP~t   75 (75)
T d1hypa_          65 SYPSNATCPRT   75 (75)
T ss_dssp             SSCCCCCCSCC
T ss_pred             cCcCCCcCCCC
Confidence            99999999863

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=91.36  E-value=0.011  Score=39.14  Aligned_cols=75  Identities=15%  Similarity=0.377  Sum_probs=49.7

Q ss_pred             ccchhHHHhHHHHhhhhcCCCCCCccccccccccccc----cchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCC
Q 040200           42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELE----AMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEI  117 (132)
Q Consensus        42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dld----A~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~  117 (132)
                      ..+|.-|.+.|.     -|..|.++||.-+++|.+.-    . ..|+|..+|...-++..+ |.  -....|=..||-++
T Consensus         7 ~~~l~pCl~Yl~-----g~~~P~~~CC~gv~~L~~~a~t~~d-~~~lC~cl~~~~~~~~~i-n~--~ra~~LP~~C~v~~   77 (91)
T d1mida_           7 DSKMKPCLTYVQ-----GGPGPSGECCNGVRDLHNQAQSSGD-RQTVCNCLKGIARGIHNL-NL--NNAASIPSKCNVNV   77 (91)
T ss_dssp             HHHHGGGHHHHT-----TCSCCCHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHTCTTC-CH--HHHHHHHHHTTCCC
T ss_pred             HHHHHhhHHHHc-----CCCCCCcchhhhHHHHHHHhcCCCc-HHHHHHhhhhhcccCCCc-CH--HHHHhchHhcCCCC
Confidence            345666777762     24456789999999997642    2 368898888754222122 33  35667788999999


Q ss_pred             C----CCcccCC
Q 040200          118 P----SDFQCIN  125 (132)
Q Consensus       118 P----~gF~C~~  125 (132)
                      |    +.+.|..
T Consensus        78 p~pis~~~dC~~   89 (91)
T d1mida_          78 PYTISPDIDCSR   89 (91)
T ss_dssp             CSCCCTTCCGGG
T ss_pred             CCCCCCCCCCCC
Confidence            8    6777854

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=91.08  E-value=0.045  Score=35.19  Aligned_cols=64  Identities=16%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             cccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCCC
Q 040200           41 NFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPS  119 (132)
Q Consensus        41 d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P~  119 (132)
                      |..+|..|+..+     .-|.+|+..||+-+..     = .-|||.-+|--.+.= .+ +  +.+-+-+++.||-.+|.
T Consensus         3 ~p~~L~~C~~Ai-----~~g~~PS~~CC~kLke-----Q-~~ClC~Y~kdP~~~~-yv-~--spnarkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAI-----LSGAKPSGECCGNLRA-----Q-QGCFCQYAKDPTYGQ-YI-R--SPHARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHH-----HHCCCCCHHHHHHHHH-----H-GGGHHHHTTCTTTHH-HH-T--SHHHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHH-----hcCCCCcHHHHHHHHh-----c-CCccceecCCccHHH-Hc-C--CHHHHHHHHhcCCCCCC
Confidence            345799999885     4588899999987653     2 569999999988873 22 3  25788899999999885

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.82  E-value=0.012  Score=38.94  Aligned_cols=79  Identities=16%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             CCccccchhHHHhHHHHhhhhcCCCCCCcccccccccccc----ccchhhhhHhhhcccccccccCCCCcchHHHHHHHh
Q 040200           38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL----EAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYC  113 (132)
Q Consensus        38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl----dA~avCLCtAikanvLgI~~l~~ip~v~l~llln~C  113 (132)
                      |..-..+|.-|.+.|.    +-+..|.++||.-+++|.+.    +- ..|+|..+|...-+...+ |.  -.+..|=..|
T Consensus         4 C~~v~~~l~pCl~Ylt----g~~~~Ps~~CC~gv~~l~~~a~t~~d-r~~lC~cl~~~~~~~~~i-n~--~ra~~LP~~C   75 (93)
T d1fk5a_           4 CGQVASAIAPCISYAR----GQGSGPSAGCCSGVRSLNNAARTTAD-RRAACNCLKNAAAGVSGL-NA--GNAASIPSKC   75 (93)
T ss_dssp             HHHHHHHHGGGHHHHT----TCSSSCCHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHTCTTC-CH--HHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHHHh----CCCCCCCCchhHHHHHHHHHccCCcc-HHHHHHhhhhcccccCCc-CH--HHHHhhhHhc
Confidence            4444456777888761    22334677899999999874    22 368888888754332122 32  3566677899


Q ss_pred             CCCCC----CCcccC
Q 040200          114 ESEIP----SDFQCI  124 (132)
Q Consensus       114 Gk~~P----~gF~C~  124 (132)
                      |-++|    +.+.|.
T Consensus        76 ~v~l~~pis~~~dCs   90 (93)
T d1fk5a_          76 GVSIPYTISTSTDCS   90 (93)
T ss_dssp             TCCCSSCCSTTCCGG
T ss_pred             CCCCCCCCCCCCCCC
Confidence            99887    566774

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=82.63  E-value=0.049  Score=35.15  Aligned_cols=64  Identities=19%  Similarity=0.328  Sum_probs=48.5

Q ss_pred             cccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCCC
Q 040200           41 NFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIPS  119 (132)
Q Consensus        41 d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P~  119 (132)
                      |..+|..|+..+     .-|.+|+..||+-+..     = .-|||.-+|--.++= .+ +  |.+-+-+++.||-.+|.
T Consensus         4 ~p~~L~~C~~ai-----~~g~~PS~~CC~kLke-----Q-~~ClC~Y~k~P~~~~-yv-~--spnarkv~~aCgvp~P~   67 (69)
T d1l6ha_           4 NAGQLTVCTGAI-----AGGARPTAACCSSLRA-----Q-QGCFCQFAKDPRYGR-YV-N--SPNARKAVSSCGIALPT   67 (69)
T ss_dssp             TTTTHHHHHHHH-----TTCCSTTHHHHHHHHH-----H-HHHHHHHTTCSSHHH-HT-T--TTTGGGCCCCCSSCSCC
T ss_pred             ChhhccccHHHH-----hCCCCCcHHHHHHHHh-----c-CCccceeccCccHHH-Hc-C--CHHHHHHHHhcCCCCCC
Confidence            345799999874     5578889999987764     2 569999999888773 23 3  24677888899998885