Citrus Sinensis ID: 040215

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEcEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNdnledagneliltdediVRFQIGevfahvpreEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGkfrdsinleed
Flexible Loop (DISEMBL)
aeksdtvvtwedqqninkfsklnnRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNElkkilygkfrdsinleed
Low Complexity Region (SEG)
AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPreeveirieemkevNSktleklekeketVLAQMNELKKILYGKFRDSINLEED
Disordered region (IsUnstruct)
*********W*****INKFSKLNNRFHELEDEIKFA******LEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRI*********************LAQMNELKKILYGKF*********
Disordered Region (DISOPRED)
***SDTV*TWEDQQNINKFSKLNNRFHEL*************LEDAGNELILTDEDIVRFQIGEVFAHVPREEVE***************************MNELKKILYGKFRDSINL***
Disordered Region (DISEMBL)
**********EDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED
Disordered Region (DISPRO)
***SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSIN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AEKSDTVVTWEDQQNINKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNELILTDEDIVRFQIGEVFAHVPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLYGKFRDSINLEED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q9M4B5	129	Probable prefoldin subuni	yes	no	0.975	0.930	0.716	5e-45
Q9M4C4	126	Probable prefoldin subuni	N/A	no	1.0	0.976	0.715	2e-42
Q9NQP4	134	Prefoldin subunit 4 OS=Ho	yes	no	0.967	0.888	0.404	1e-15
Q2TBR6	134	Prefoldin subunit 4 OS=Bo	yes	no	0.967	0.888	0.404	3e-15
P53900	129	Prefoldin subunit 4 OS=Sa	yes	no	0.983	0.937	0.360	5e-13
Q54TB7	132	Probable prefoldin subuni	yes	no	0.894	0.833	0.384	8e-11
Q17435	126	Probable prefoldin subuni	yes	no	0.943	0.920	0.352	2e-10
A8X0Z1	126	Probable prefoldin subuni	N/A	no	0.926	0.904	0.358	8e-10
Q9VRL3	138	Probable prefoldin subuni	yes	no	0.951	0.847	0.355	8e-07
Q9UTD4	123	Probable prefoldin subuni	yes	no	0.926	0.926	0.355	3e-05

>sp|Q9M4B5|PFD4_ARATH Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1 SV=3

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 104/120 (86%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+  VTWEDQQNIN FS+LNNR H+L+D+IK AKE  +NLEDAGNELIL DE++VRFQIG
Sbjct: 10  SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIG 69

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVPR++VE +IEEMKE   K+LEKLE+EKE+++ QM  LKK+LY KF+DSINLEED
Sbjct: 70  EVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M4C4|PFD4_AVEFA Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 108/123 (87%)

Query: 1   AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRF 60
            + ++  VTWEDQQNIN+F +LNNRFHEL DEI+ AKE N+NLEDAGNELIL DED+VRF
Sbjct: 4   GDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRF 63

Query: 61  QIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINL 120
           QIGEVFAH+P ++VE R+E+MKE  +K LE+LE+EKE++LAQM ELKKILYGKF+D+INL
Sbjct: 64  QIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINL 123

Query: 121 EED 123
           EED
Sbjct: 124 EED 126

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Avena fatua (taxid: 4499)

>sp|Q9NQP4|PFD4_HUMAN Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 78/121 (64%), Gaps = 2/121 (1%)

Query: 5   DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
           D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++ +QI
Sbjct: 12  DVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQI 71

Query: 63  GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEE 122
           G+VF    +EE +  +EE K+   + ++ LE   E++   + +LK  LY KF  +INLE 
Sbjct: 72  GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query: 123 D 123
           D
Sbjct: 132 D 132

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q2TBR6|PFD4_BOVIN Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 2/121 (1%)

Query: 5   DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
           D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++ +QI
Sbjct: 12  DVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQI 71

Query: 63  GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEE 122
           G+VF    +EE +  +EE K+   + ++ LE   E++   + +LK  LY KF  +INLE 
Sbjct: 72  GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query: 123 D 123
           D
Sbjct: 132 D 132

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|P53900|PFD4_YEAST Prefoldin subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM3 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 77/122 (63%), Gaps = 1/122 (0%)

Query: 1   AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVR 59
            ++++T VT+EDQQ IN+FSKL  R   +  E+   +E  + L+D   E+ L DED  V+
Sbjct: 7   GQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQ 66

Query: 60  FQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSIN 119
           +++G++F  + + +V  ++E+  E     +E LE ++  + ++++ LK ILY KF D+IN
Sbjct: 67  YKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNIN 126

Query: 120 LE 121
           LE
Sbjct: 127 LE 128

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54TB7|PFD4_DICDI Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 15/125 (12%)

Query: 6   TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRFQIGE 64
           T V   DQ+ IN F +LNNR HEL  E K  +E  +   D+ ++L + D+D   ++ +GE
Sbjct: 15  TEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGE 74

Query: 65  VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN-------ELKKILYGKFRDS 117
            F  V +E+ E  IE       K + KLE++ + + + +N       ELK ILY KF++S
Sbjct: 75  AFLEVNKEDAESLIE-------KYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNS 127

Query: 118 INLEE 122
           INLEE
Sbjct: 128 INLEE 132

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q17435|PFD4_CAEEL Probable prefoldin subunit 4 OS=Caenorhabditis elegans GN=pfd-4 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 6   TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE-LILTDEDI--VRFQI 62
           T V+ EDQ  +NKF++      +L+ ++K AK   DN+ +A +E L+L DED   +  +I
Sbjct: 5   TKVSAEDQALLNKFARSYQTQTQLKADVKEAKTLIDNINEASDEILLLDDEDSASIPCRI 64

Query: 63  GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
           G  F H   + +   +E  K    K L +   E + + A M ++KK+LY KF D INL+
Sbjct: 65  GSCFVHFNGDSLNEHLEGKKTTAEKVLSEKTSELDAISADMEQIKKVLYAKFGDQINLD 123

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|A8X0Z1|PFD4_CAEBR Probable prefoldin subunit 4 OS=Caenorhabditis briggsae GN=pfd-4 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 8   VTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE-LILTDEDI--VRFQIGE 64
           V+ EDQ  +NKF++      +L+ E K  K   +N+ +A +E L+L DED   +  +IG 
Sbjct: 7   VSAEDQALLNKFARSYQLQTQLKAECKEMKTLVENINEATDEVLLLDDEDSASIPCRIGS 66

Query: 65  VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
            F H   + +   +E  K      L +   E ET+ A+M  +KK+LYGKF D INL+
Sbjct: 67  CFVHFNSDSLNEHLEAKKASTETVLAEKTNELETITAEMERIKKVLYGKFGDQINLD 123

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Appears to play a non-essential role.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9VRL3|PFD4_DROME Probable prefoldin subunit 4 OS=Drosophila melanogaster GN=CG10635 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 5   DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIG 63
           D  +++EDQQ IN+F+K N R  + + E++  +    +LE+A  E+ L DED  + F +G
Sbjct: 18  DVHISFEDQQRINRFAKHNARMDDFKAELETKRNELKSLEEALEEIELFDEDEDIPFLVG 77

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
           EVF     E+ +  ++E KE   K +  +E + + + A+M+ELK  LY +F  +I+LE
Sbjct: 78  EVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLE 135

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q9UTD4|PFD4_SCHPO Probable prefoldin subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.05 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 8   VTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED----IVRFQIG 63
           V  EDQ+N+N+FS L++R    E +IK  K   +++ DA NE  L DED    I   ++G
Sbjct: 6   VLAEDQRNLNEFSVLHSRKAIQELDIKNLKTQIEDIVDAKNECELLDEDDGDDIPALKVG 65

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
           + F  V    +  ++E+ +E   K ++ L    E    ++ ELK +LY KF D INL+
Sbjct: 66  DAFFQVSLPVLLDQLEQSEESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQINLD 123

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
255580927	126	Prefoldin subunit, putative [Ricinus com	0.975	0.952	0.825	2e-50
224131242	126	predicted protein [Populus trichocarpa]	0.943	0.920	0.827	3e-48
351734418	126	uncharacterized protein LOC100306048 [Gl	0.983	0.960	0.793	5e-48
224123444	126	predicted protein [Populus trichocarpa]	0.975	0.952	0.8	3e-47
388501348	126	unknown [Medicago truncatula]	0.975	0.952	0.775	4e-47
449442953	126	PREDICTED: probable prefoldin subunit 4-	0.975	0.952	0.75	4e-46
115454217	126	Os03g0628900 [Oryza sativa Japonica Grou	1.0	0.976	0.699	2e-45
225453014	126	PREDICTED: probable prefoldin subunit 4	0.975	0.952	0.825	2e-44
297849180	129	hypothetical protein ARALYDRAFT_334161 [	0.975	0.930	0.716	8e-44
351726536	126	uncharacterized protein LOC100499849 [Gl	0.975	0.952	0.816	1e-43

>gi|255580927|ref|XP_002531282.1| Prefoldin subunit, putative [Ricinus communis] gi|223529115|gb|EEF31095.1| Prefoldin subunit, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 111/120 (92%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+TVVTWEDQQNINKF +LNNRFHELEDEIK AKETNDNLEDA NELILTDE++VRFQIG
Sbjct: 7   SETVVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAH+P+EEVE RIEEMKEV +K LEKLE+EK+++L QM ELKK+LYGKF DSINLEED
Sbjct: 67  EVFAHIPKEEVETRIEEMKEVTNKNLEKLEEEKDSILTQMAELKKVLYGKFGDSINLEED 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131242|ref|XP_002328490.1| predicted protein [Populus trichocarpa] gi|118485506|gb|ABK94607.1| unknown [Populus trichocarpa] gi|222838205|gb|EEE76570.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 106/116 (91%)

Query: 8   VTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFA 67
           VTWEDQQNINKF +LNNRFHELEDEIK AKETNDNLEDA NELILTDE++VRFQIGEVFA
Sbjct: 11  VTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIGEVFA 70

Query: 68  HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           HVP++EVE RIE+MKEV  + LEKLE+EK +VLAQM ELKKILYGKF +SINLEED
Sbjct: 71  HVPKDEVETRIEQMKEVTGQNLEKLEEEKNSVLAQMTELKKILYGKFGESINLEED 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734418|ref|NP_001236750.1| uncharacterized protein LOC100306048 [Glycine max] gi|255627387|gb|ACU14038.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 110/121 (90%)

Query: 3   KSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQI 62
           +S+T VTWEDQQNINKF +LNNRFHELEDEIK AKETNDNLEDA NELILTDE+++RFQI
Sbjct: 6   RSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQI 65

Query: 63  GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEE 122
           GEVFAHVP++EVE RIE++KEV S+ L KLE+EKE++LAQM ELKKILY KF DSINLEE
Sbjct: 66  GEVFAHVPKDEVENRIEQIKEVTSQKLAKLEEEKESILAQMAELKKILYAKFNDSINLEE 125

Query: 123 D 123
           D
Sbjct: 126 D 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123444|ref|XP_002319080.1| predicted protein [Populus trichocarpa] gi|222857456|gb|EEE95003.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 107/120 (89%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           SD  VTWEDQQNIN F +LNNR HELEDEIK AKETNDNLEDA NELILTDE++VRFQIG
Sbjct: 7   SDKEVTWEDQQNINNFGRLNNRLHELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVPR+EVE RIE+MKEV SK +EKL++EKE V+AQM +LKKILYGKF DSINLEE+
Sbjct: 67  EVFAHVPRDEVETRIEQMKEVTSKNMEKLDEEKEFVVAQMAKLKKILYGKFGDSINLEEN 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501348|gb|AFK38740.1| unknown [Medicago truncatula]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/120 (77%), Positives = 109/120 (90%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+T VTWEDQQNINKF +LNNR HEL DEIK AKE+NDNLEDA NELILTDE++VRFQIG
Sbjct: 7   SETEVTWEDQQNINKFGRLNNRLHELHDEIKIAKESNDNLEDASNELILTDEEVVRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVP++EVE RIE+M+E  S+ LEKLE+EK++V+AQM+ELKKILYGKF +SINLEED
Sbjct: 67  EVFAHVPKDEVESRIEQMQEATSQKLEKLEEEKQSVVAQMSELKKILYGKFGESINLEED 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442953|ref|XP_004139245.1| PREDICTED: probable prefoldin subunit 4-like [Cucumis sativus] gi|449483025|ref|XP_004156473.1| PREDICTED: probable prefoldin subunit 4-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 112/120 (93%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S++ VTWEDQQNINKFS+LNNRFHELEDEI+ AKETN+NLEDA NELIL+D+D++RFQIG
Sbjct: 7   SESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNENLEDASNELILSDDDVIRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAH+P+EEVE R+E+MKE N + LEKL++EK++++AQM ELKKILYGKF+DSINLE+D
Sbjct: 67  EVFAHIPKEEVEGRLEQMKEENVENLEKLKEEKDSIVAQMAELKKILYGKFKDSINLEDD 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115454217|ref|NP_001050709.1| Os03g0628900 [Oryza sativa Japonica Group] gi|62733483|gb|AAX95600.1| hypothetical protein [Oryza sativa Japonica Group] gi|108709941|gb|ABF97736.1| prefoldin subunit 4, putative, expressed [Oryza sativa Japonica Group] gi|113549180|dbj|BAF12623.1| Os03g0628900 [Oryza sativa Japonica Group] gi|125544957|gb|EAY91096.1| hypothetical protein OsI_12705 [Oryza sativa Indica Group] gi|125587195|gb|EAZ27859.1| hypothetical protein OsJ_11811 [Oryza sativa Japonica Group]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 109/123 (88%)

Query: 1   AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRF 60
            + ++  VTWEDQQNIN+F +LNNR HEL DEIK AKE N+NL+DAGNELIL+DED+VRF
Sbjct: 4   GDGTEAQVTWEDQQNINRFGRLNNRLHELHDEIKLAKEANENLDDAGNELILSDEDVVRF 63

Query: 61  QIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINL 120
           QIGEVFAH+PR++VE R+E+MKE  +K LE+LE+EKE++++QM ELKKILYGKF+D+INL
Sbjct: 64  QIGEVFAHMPRDDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELKKILYGKFKDAINL 123

Query: 121 EED 123
           EED
Sbjct: 124 EED 126

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453014|ref|XP_002264422.1| PREDICTED: probable prefoldin subunit 4 [Vitis vinifera] gi|296087923|emb|CBI35206.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 112/120 (93%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+T VTWEDQQNINKF +LNNRFHELEDEIK AKETN+NLEDA NELILTDE++VRFQIG
Sbjct: 7   SETEVTWEDQQNINKFGRLNNRFHELEDEIKMAKETNENLEDASNELILTDEEMVRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVP+EEVE RIE+MKEV SK LEKLE+EK++V+AQM ELKKILYGKF++SINLEED
Sbjct: 67  EVFAHVPKEEVEERIEQMKEVTSKKLEKLEEEKDSVVAQMAELKKILYGKFKESINLEED 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849180|ref|XP_002892471.1| hypothetical protein ARALYDRAFT_334161 [Arabidopsis lyrata subsp. lyrata] gi|297338313|gb|EFH68730.1| hypothetical protein ARALYDRAFT_334161 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 105/120 (87%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+  VTWEDQQNIN FS+LNNRFH+L+DEIK AKE  +NL+DAGNELIL DE++VRFQIG
Sbjct: 10  SEMEVTWEDQQNINTFSRLNNRFHDLDDEIKSAKEKCENLDDAGNELILADEEMVRFQIG 69

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVPR++VE +IEEMKE   K+LEKLE+EK++++ QM  LKK+LY KF+DSINLEED
Sbjct: 70  EVFAHVPRDDVETKIEEMKEATCKSLEKLEEEKKSIVTQMAALKKVLYAKFKDSINLEED 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726536|ref|NP_001236874.1| uncharacterized protein LOC100499849 [Glycine max] gi|255627115|gb|ACU13902.1| unknown [Glycine max]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 110/120 (91%)

Query: 4   SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
           S+T VTWEDQQNINKF +LNNRFHELEDEIK AKETNDNLEDA NELILTDE+++RFQIG
Sbjct: 7   SETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQIG 66

Query: 64  EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
           EVFAHVP++EVE RIE++KEV S+ LEKLE+EKE+VLAQM ELKKILY KF DSINLEED
Sbjct: 67  EVFAHVPKDEVENRIEQIKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:2025655	129	AIP3 "ABI3-interacting protein	0.975	0.930	0.566	1.4e-30
ZFIN|ZDB-GENE-100922-122	136	pfdn4 "prefoldin subunit 4" [D	0.967	0.875	0.347	3e-14
ASPGD|ASPL0000058618	138	AN0862 [Emericella nidulans (t	0.951	0.847	0.330	5.6e-13
UNIPROTKB|F1NP43	137	PFDN4 "Uncharacterized protein	1.0	0.897	0.333	9.1e-13
UNIPROTKB|E9PQY2	136	PFDN4 "Prefoldin subunit 4" [H	1.0	0.904	0.336	9.1e-13
UNIPROTKB|Q9NQP4	134	PFDN4 "Prefoldin subunit 4" [H	1.0	0.917	0.336	9.1e-13
UNIPROTKB|A5GHK3	134	PFDN4 "Uncharacterized protein	1.0	0.917	0.336	9.1e-13
UNIPROTKB|Q2TBR6	134	PFDN4 "Prefoldin subunit 4" [B	1.0	0.917	0.336	1.2e-12
UNIPROTKB|F1PHE6	135	LOC100855575 "Uncharacterized	0.967	0.881	0.338	1.5e-12
DICTYBASE|DDB_G0281873	132	pfdn4 "prefoldin subunit 4" [D	0.552	0.515	0.376	1.8e-12

TAIR|locus:2025655 AIP3 "ABI3-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/120 (56%), Positives = 80/120 (66%)

Query:     4 SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
             S+  VTWEDQQNIN FS+LNNR H+L+D+IK AKE  +NLEDAGNELIL DE++VRFQIG
Sbjct:    10 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIG 69

Query:    64 EVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 123
             EVFAHVP                            ++ QM  LKK+LY KF+DSINLEED
Sbjct:    70 EVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-100922-122 pfdn4 "prefoldin subunit 4" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/121 (34%), Positives = 64/121 (52%)

Query:     5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
             D  VT+EDQQ INKF++  NR  EL+DEI+  K++  NLEDA ++L++ ++D  ++ +QI
Sbjct:    14 DVNVTFEDQQKINKFARNTNRMSELKDEIEAKKKSLQNLEDASDDLMMCEDDSMLIPYQI 73

Query:    63 GEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEE 122
             G+VF                                +   + +LK  LY KF ++INLE 
Sbjct:    74 GDVFISHSQEETQEMLEAAKEALQEEIKALEGRVSSIQGVLGDLKVQLYAKFGNNINLEA 133

Query:   123 D 123
             D
Sbjct:   134 D 134

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ASPGD|ASPL0000058618 AN0862 [Emericella nidulans (taxid:162425)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 39/118 (33%), Positives = 61/118 (51%)

Query:     5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIG 63
             DT V  EDQ+ IN+FS+L+ R   LE+++K  ++  ++LE+   EL L DED ++ ++IG
Sbjct:    20 DTEVRREDQEKINRFSRLHQRETVLEEKLKGKQKDKEDLEEISTELELADEDELIPYKIG 79

Query:    64 EVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLE 121
             + F H+P                            +  +M +LK  LY +F  SINLE
Sbjct:    80 DSFVHLPLEEAQTLLASSTEQIDSEVAKLEETLSDLRDEMQQLKVALYARFGRSINLE 137

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0015631 "tubulin binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

UNIPROTKB|F1NP43 PFDN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 42/126 (33%), Positives = 66/126 (52%)

Query:     1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IV 58
             A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA +++++ D+D  ++
Sbjct:    11 AAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMMLDDDSLLI 70

Query:    59 RFQIGEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSI 118
              +QIG+VF                                +   +++LK  LY KF ++I
Sbjct:    71 PYQIGDVFISHSQEETQEMLEEAKKSLQEEIETLESRVESIQRVLSDLKVQLYAKFGNNI 130

Query:   119 NLE-ED 123
             NLE ED
Sbjct:   131 NLEAED 136

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E9PQY2 PFDN4 "Prefoldin subunit 4" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 42/125 (33%), Positives = 63/125 (50%)

Query:     1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IV 58
             A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++
Sbjct:     8 AAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMI 67

Query:    59 RFQIGEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSI 118
              +QIG+VF                                +   + +LK  LY KF  +I
Sbjct:    68 PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNI 127

Query:   119 NLEED 123
             NLE D
Sbjct:   128 NLEAD 132

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q9NQP4 PFDN4 "Prefoldin subunit 4" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 42/125 (33%), Positives = 63/125 (50%)

Query:     1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IV 58
             A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++
Sbjct:     8 AAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMI 67

Query:    59 RFQIGEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSI 118
              +QIG+VF                                +   + +LK  LY KF  +I
Sbjct:    68 PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNI 127

Query:   119 NLEED 123
             NLE D
Sbjct:   128 NLEAD 132

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0051087 "chaperone binding" evidence=TAS

GO:0005829 "cytosol" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

UNIPROTKB|A5GHK3 PFDN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 42/125 (33%), Positives = 62/125 (49%)

Query:     1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IV 58
             A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++
Sbjct:     8 AAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMI 67

Query:    59 RFQIGEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSI 118
              +QIG+VF                                +   + +LK  LY KF  +I
Sbjct:    68 PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVASIQRVLADLKVQLYAKFGSNI 127

Query:   119 NLEED 123
             NLE D
Sbjct:   128 NLEAD 132

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q2TBR6 PFDN4 "Prefoldin subunit 4" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 42/125 (33%), Positives = 62/125 (49%)

Query:     1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IV 58
             A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++
Sbjct:     8 AAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMI 67

Query:    59 RFQIGEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSI 118
              +QIG+VF                                +   + +LK  LY KF  +I
Sbjct:    68 PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNI 127

Query:   119 NLEED 123
             NLE D
Sbjct:   128 NLEAD 132

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|F1PHE6 LOC100855575 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 41/121 (33%), Positives = 61/121 (50%)

Query:     5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
             D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++ +QI
Sbjct:    13 DVNVTFEDQQKINKFARNTSRITELKEEIEIKKKQLQNLEDACEDIMLADDDCLMIPYQI 72

Query:    63 GEVFAHVPXXXXXXXXXXXXXXNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEE 122
             G+VF                                +   + +LK  LY KF  +INLE 
Sbjct:    73 GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLADLKVQLYAKFGSNINLEA 132

Query:   123 D 123
             D
Sbjct:   133 D 133

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

DICTYBASE|DDB_G0281873 pfdn4 "prefoldin subunit 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 110 (43.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query:     2 EKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRF 60
             E  +T V   DQ+ IN F +LNNR HEL  E K  +E  +   D+ ++L + D+D   ++
Sbjct:    11 EVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKY 70

Query:    61 QIGEVFAHV 69
              +GE F  V
Sbjct:    71 SMGEAFLEV 79

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54TB7	PFD4_DICDI	No assigned EC number	0.384	0.8943	0.8333	yes	no
Q9VRL3	PFD4_DROME	No assigned EC number	0.3559	0.9512	0.8478	yes	no
Q2TBR6	PFD4_BOVIN	No assigned EC number	0.4049	0.9674	0.8880	yes	no
Q17435	PFD4_CAEEL	No assigned EC number	0.3529	0.9430	0.9206	yes	no
Q9NQP4	PFD4_HUMAN	No assigned EC number	0.4049	0.9674	0.8880	yes	no
P53900	PFD4_YEAST	No assigned EC number	0.3606	0.9837	0.9379	yes	no
Q9M4B5	PFD4_ARATH	No assigned EC number	0.7166	0.9756	0.9302	yes	no
Q9M4C4	PFD4_AVEFA	No assigned EC number	0.7154	1.0	0.9761	N/A	no
Q9UTD4	PFD4_SCHPO	No assigned EC number	0.3559	0.9268	0.9268	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00700054	SubName- Full=Putative uncharacterized protein; (126 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IV4438	hypothetical protein (125 aa)				•	•	•	•		0.699
	estExt_fgenesh4_pm.C_LG_VI0254	SubName- Full=Putative uncharacterized protein; (129 aa)				•	•	•	•		0.439
	grail3.0068014301	SubName- Full=Putative uncharacterized protein; (145 aa)				•	•	•	•		0.433
	eugene3.00081447	hypothetical protein (145 aa)				•	•	•	•		0.415
	estExt_fgenesh4_pm.C_LG_VII0256	SubName- Full=Putative uncharacterized protein; (158 aa)				•	•	•	•		0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	2e-12
COG1382	119	COG1382, GimC, Prefoldin, chaperonin cofactor [Pos	3e-04

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 13  QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHVPR 71
           Q+ INKF +L  +   L  +IK  +     +E    EL L DED  V   IG+V     +
Sbjct: 1   QELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDK 60

Query: 72  EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDS 117
           EEV+  +EE KE   K ++ LEK+ E +  ++ ELK+ LY  F   
Sbjct: 61  EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQQ 106

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 11  EDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHV 69
           E Q  + +  +L  +  ++  + +  +     +E A  EL   DED  V  ++G +   V
Sbjct: 7   EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKV 66

Query: 70  PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
            +EE    +EE KE     ++ LEK++E +  ++ EL+  +     D+ N  
Sbjct: 67  SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	100.0
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.84
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.67
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.55
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.41
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.75
PRK09343	121	prefoldin subunit beta; Provisional	98.58
PRK03947	140	prefoldin subunit alpha; Reviewed	98.11
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	97.77
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	97.68
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	97.59
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	97.36
PRK14011	144	prefoldin subunit alpha; Provisional	97.26
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	96.31
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	94.69
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	94.39
KOG3501	114	consensus Molecular chaperone Prefoldin, subunit 1	94.24
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	92.89
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	91.83
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	91.05
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	91.02
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	90.74
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	86.19
PRK09343	121	prefoldin subunit beta; Provisional	84.56
PF10186	302	Atg14: UV radiation resistance protein and autopha	82.34
PF13758	99	Prefoldin_3: Prefoldin subunit	82.09
PRK01203	130	prefoldin subunit alpha; Provisional	81.67
PRK02224	880	chromosome segregation protein; Provisional	80.5

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-50  Score=293.10  Aligned_cols=121  Identities=49%  Similarity=0.760  Sum_probs=117.9

Q ss_pred             CccccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCC-ccceeeecceeeecChhHHHHHHHH
Q 040215            3 KSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDE-DIVRFQIGEVFAHVPREEVEIRIEE   80 (123)
Q Consensus         3 ~~dveVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd-~~i~ykiGe~Fv~~~~~~a~e~LE~   80 (123)
                      ..+|+|||||||+||+|||+|+|.++++.+|+.+|+++++|+||++|| |+|+| ++|||+||+||+|++.+.++++||.
T Consensus         9 ~e~v~Vt~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe   88 (131)
T KOG1760|consen    9 PEDVKVTFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEE   88 (131)
T ss_pred             cccCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999999999 99987 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCC
Q 040215           81 MKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED  123 (123)
Q Consensus        81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~INLE~~  123 (123)
                      .++.+.++|+.|+++++.|..+|.+||++||||||++||||++
T Consensus        89 ~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdnINLeae  131 (131)
T KOG1760|consen   89 KKETLEKEIEELESELESISARMDELKKVLYAKFGDNINLEAE  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCC
Confidence            9999999999999999999999999999999999999999986

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.84  E-value=8.4e-20  Score=126.00  Aligned_cols=105  Identities=33%  Similarity=0.428  Sum_probs=100.0

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK   91 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~   91 (123)
                      |+.|++|++++.++..+...+..+..++..++++..|| .+++|.+++..||.|||..|.+++.+.|+...+.++.+++.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999 88887788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040215           92 LEKEKETVLAQMNELKKILYGKFRDS  117 (123)
Q Consensus        92 le~~~~~i~~~m~eLK~~LYaKFG~~  117 (123)
                      |+..+..+..+|.+++..||++||++
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~~~~q  106 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYELFGQQ  106 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999985

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.5e-15  Score=111.19  Aligned_cols=115  Identities=22%  Similarity=0.289  Sum_probs=110.2

Q ss_pred             cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215            7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN   85 (123)
Q Consensus         7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~   85 (123)
                      ++..+.|..+++|..|.+++..+-.+......++....+|..|| .+++|.+|.+.+|+.||.++.++|...|+...+.+
T Consensus         3 ~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L   82 (119)
T COG1382           3 QLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETL   82 (119)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999999999999999999 88998888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC
Q 040215           86 SKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE  121 (123)
Q Consensus        86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~INLE  121 (123)
                      +-+|..|+...+.+++++.+|+..||++||..+|..
T Consensus        83 e~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~  118 (119)
T COG1382          83 ELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG  118 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            999999999999999999999999999999999875

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.55  E-value=7.1e-14  Score=98.53  Aligned_cols=100  Identities=19%  Similarity=0.300  Sum_probs=95.7

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK   91 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~   91 (123)
                      |+.|+.|-.|-..+..+...+..+...+....+|.+|| ++++|.++++.||.|||..|.++|...|+...+.++.++..
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~   81 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR   81 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999 88888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 040215           92 LEKEKETVLAQMNELKKILYG  112 (123)
Q Consensus        92 le~~~~~i~~~m~eLK~~LYa  112 (123)
                      ++.+++.+..+|.+||..|-.
T Consensus        82 l~~~~~~l~~~~~elk~~l~~  102 (105)
T cd00632          82 LERQEEDLQEKLKELQEKIQQ  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998743

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.41  E-value=7.5e-12  Score=88.89  Aligned_cols=102  Identities=29%  Similarity=0.333  Sum_probs=94.7

Q ss_pred             HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcC-------------CCccceeeec-ceeeecChhHHHH
Q 040215           12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILT-------------DEDIVRFQIG-EVFAHVPREEVEI   76 (123)
Q Consensus        12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~d-------------dd~~i~ykiG-e~Fv~~~~~~a~e   76 (123)
                      =|+.|+.|++.++++.....+++..+..+..|.++..+. +..             +++.|++.|| .+||.++.++|.+
T Consensus        11 l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~   90 (129)
T cd00890          11 LQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIE   90 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHH
Confidence            378999999999999999999999999999999999988 553             5567999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215           77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK  113 (123)
Q Consensus        77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK  113 (123)
                      .|++..+.+++.++.++..+..+..+|..|+..|=.+
T Consensus        91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887544

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.75  E-value=3.3e-07  Score=65.20  Aligned_cols=107  Identities=19%  Similarity=0.287  Sum_probs=97.4

Q ss_pred             cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHH
Q 040215            9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSK   87 (123)
Q Consensus         9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~   87 (123)
                      ..+=|..|+.|.++..++..+...+..+..++....=+-.|| -+++|.++.-.||-+||..+.++|...|+...+.++.
T Consensus         2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~   81 (110)
T TIGR02338         2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLEL   81 (110)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999 7777654544599999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215           88 TLEKLEKEKETVLAQMNELKKILYGKFR  115 (123)
Q Consensus        88 ei~~le~~~~~i~~~m~eLK~~LYaKFG  115 (123)
                      .+..|+.+...+..++.++...|..-++
T Consensus        82 ~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        82 RVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999887553

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK09343 prefoldin subunit beta; Provisional

Probab=98.58  E-value=1.5e-06  Score=63.25  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=96.9

Q ss_pred             cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215            7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN   85 (123)
Q Consensus         7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~   85 (123)
                      .+..+=|..|+.|-.+-.++..+...+..+..++...+=+..|| .+++|.+|-=.||-+||..|.++|...|++..+-+
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999 77776544444999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215           86 SKTLEKLEKEKETVLAQMNELKKILYGKF  114 (123)
Q Consensus        86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKF  114 (123)
                      +.+|..|+.+...++..+.++...|..-+
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll  112 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKINEML  112 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988876544

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.11  E-value=0.00017  Score=52.56  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=83.3

Q ss_pred             HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC--CCccceeeec---------------------c
Q 040215           10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT--DEDIVRFQIG---------------------E   64 (123)
Q Consensus        10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d--dd~~i~ykiG---------------------e   64 (123)
                      .+=|+....|..+......|...+..+...+..+..+...|  |..  ++..+.+.||                     .
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g   85 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG   85 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Confidence            44577778888888888888888888888888888887777  432  3335777777                     6


Q ss_pred             eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           65 VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        65 ~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      +||..+.++|.+.|++..+.+.+.++.+...+..+..++..+...|
T Consensus        86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  131 (140)
T PRK03947         86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL  131 (140)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999999999999999888765

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=97.77  E-value=0.0018  Score=46.31  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCC-Cccceeee---------------------cceeee
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTD-EDIVRFQI---------------------GEVFAH   68 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~dd-d~~i~yki---------------------Ge~Fv~   68 (123)
                      |+.+..+..+-.....+...+..+...+..+..+.+-|  |... ...+++.+                     +..||.
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            45566677777777777777777777777777766666  3322 22355544                     456777


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY  111 (123)
Q Consensus        69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY  111 (123)
                      .+.++|.+.|++..+.+.+.++.++..+..+..++..+-..|=
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999877663

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.68  E-value=0.0028  Score=45.46  Aligned_cols=58  Identities=26%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             cceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215           57 IVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF  114 (123)
Q Consensus        57 ~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF  114 (123)
                      .|...|| .+||.++.++|.+.+.+..+.+++.++.++..+..+..+++.+-..|=.++
T Consensus        70 ~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584          70 KVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             EEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3556655 689999999999999999999999999999999999999999887765544

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0012  Score=48.45  Aligned_cols=98  Identities=17%  Similarity=0.251  Sum_probs=77.6

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK   91 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~   91 (123)
                      |..+|++..|-......-...+.+..+|..=.=.-.|| |+++|.+|-=.||-+.|..++++|..-..+..+=+.++|..
T Consensus         8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr   87 (120)
T KOG3478|consen    8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKR   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44566776666655555555555555665555677899 88887655555999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040215           92 LEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        92 le~~~~~i~~~m~eLK~~L  110 (123)
                      +++.+.+++.++..-+..+
T Consensus        88 ~e~~i~d~q~e~~k~R~~v  106 (120)
T KOG3478|consen   88 LENQIRDSQEEFEKQREAV  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887654

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=97.36  E-value=0.004  Score=43.66  Aligned_cols=57  Identities=28%  Similarity=0.327  Sum_probs=49.5

Q ss_pred             ccceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           56 DIVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG  112 (123)
Q Consensus        56 ~~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa  112 (123)
                      +.|...|| .+|+.++.++|.+.+.+....+++.++.+..++..+..++..+-..+-.
T Consensus        59 ~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~  116 (120)
T PF02996_consen   59 DKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ  116 (120)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666 5899999999999999999999999999999999999999888776543

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.26  E-value=0.026  Score=42.50  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=79.3

Q ss_pred             HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC-------------------CCccceeeec-ceee
Q 040215           10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT-------------------DEDIVRFQIG-EVFA   67 (123)
Q Consensus        10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d-------------------dd~~i~ykiG-e~Fv   67 (123)
                      .|=|+.+...-.++.+...|...+..++.-...+..+..-|  +..                   |.+.|..-|| ..||
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V   82 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL   82 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence            45577777777777777777777777766555554444333  211                   2234555565 4789


Q ss_pred             ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215           68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF  114 (123)
Q Consensus        68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF  114 (123)
                      ..+.++|.+.+++..+.+++..+.|...+.++...+.+|...|=+|+
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~  129 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRA  129 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887764

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.31  E-value=0.07  Score=37.49  Aligned_cols=98  Identities=23%  Similarity=0.300  Sum_probs=79.8

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCC--Ccccee--------------eecceeeecC-hhHH
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTD--EDIVRF--------------QIGEVFAHVP-REEV   74 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~dd--d~~i~y--------------kiGe~Fv~~~-~~~a   74 (123)
                      |+.+..+..+..++..+...+..+...+..+..+-++| -+.+  ++..+.              .-+.|+|++. .--+
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v   81 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence            56677888899999999999999999999999999999 4442  222222              3566888888 5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .--+++..+-++.+++.++..++.+...+..+..++
T Consensus        82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~  117 (129)
T cd00890          82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQI  117 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999998765

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=1.4  Score=33.38  Aligned_cols=54  Identities=20%  Similarity=0.256  Sum_probs=46.0

Q ss_pred             cceeeecc-eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           57 IVRFQIGE-VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        57 ~i~ykiGe-~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .+...||. .++..+.++|.+.|.+.++.+.+.+..++..+.++..++..|-..+
T Consensus        77 kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~  131 (145)
T COG1730          77 KVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA  131 (145)
T ss_pred             eEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555653 6788999999999999999999999999999999999998886654

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.28  Score=36.17  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=80.3

Q ss_pred             cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHH
Q 040215            7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKE   83 (123)
Q Consensus         7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e   83 (123)
                      +.....|+..+.++.+..++..++.+|+..++-++.|+.+.++  + -.-++  +.++.--.=+.-..++=.+.|+-...
T Consensus        10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~--llvk~~k~~~~~eL~er~E~Le~ri~   87 (119)
T COG1382          10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN--LLVKVSKEEAVDELEERKETLELRIK   87 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh--HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999988888887766  3 32332  55555555566677888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 040215           84 VNSKTLEKLEKEKETVLAQMNEL  106 (123)
Q Consensus        84 ~~~~ei~~le~~~~~i~~~m~eL  106 (123)
                      .+++..+.+++++++++..+...
T Consensus        88 tLekQe~~l~e~l~eLq~~i~~~  110 (119)
T COG1382          88 TLEKQEEKLQERLEELQSEIQKA  110 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887653

>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.35  Score=35.27  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=60.1

Q ss_pred             HHHHhHHhhHHHHHH-------HHHHHHHhhhhhhhhhhhhhcCCCccceee-ecceeeecChhHHHHHHHHHHHHHHHH
Q 040215           17 NKFSKLNNRFHELED-------EIKFAKETNDNLEDAGNELILTDEDIVRFQ-IGEVFAHVPREEVEIRIEEMKEVNSKT   88 (123)
Q Consensus        17 N~FsrLn~r~~~l~~-------~l~~~k~~le~L~Da~~ElL~ddd~~i~yk-iGe~Fv~~~~~~a~e~LE~~~e~~~~e   88 (123)
                      |.||.|-.+..+-..       +++.+...+.-..-+..|++.+.|++-+|. +|--||.-|..-...++++......+.
T Consensus         3 kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~   82 (114)
T KOG3501|consen    3 KAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEK   82 (114)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHH
Confidence            345555544444333       444455555555667778744444455554 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 040215           89 LEKLEKEKETVLAQMN  104 (123)
Q Consensus        89 i~~le~~~~~i~~~m~  104 (123)
                      |+.|+.+-+=++...+
T Consensus        83 IeaLqkkK~YlEk~v~   98 (114)
T KOG3501|consen   83 IEALQKKKTYLEKTVS   98 (114)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988877665554443

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=92.89  E-value=1.2  Score=33.89  Aligned_cols=68  Identities=26%  Similarity=0.378  Sum_probs=42.5

Q ss_pred             hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKE   95 (123)
Q Consensus        16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~   95 (123)
                      |+++..+..++..+++.++..+++.+....+...+                           .....+....+++++..+
T Consensus       117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~---------------------------~~~~~~~~~~ei~~lk~e  169 (192)
T PF05529_consen  117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL---------------------------LKEENKKLSEEIEKLKKE  169 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---------------------------hhhhhhhhHHHHHHHHHH
Confidence            56666666677777777776666665544433322                           444555666667777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 040215           96 KETVLAQMNELKKIL  110 (123)
Q Consensus        96 ~~~i~~~m~eLK~~L  110 (123)
                      ++..+.++..||++.
T Consensus       170 l~~~~~~~~~LkkQ~  184 (192)
T PF05529_consen  170 LEKKEKEIEALKKQS  184 (192)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777777653

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.83  E-value=3.2  Score=31.38  Aligned_cols=102  Identities=20%  Similarity=0.179  Sum_probs=78.6

Q ss_pred             ccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCcccee-eecceeeecChhHHHHHHHHHHH
Q 040215            6 TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRF-QIGEVFAHVPREEVEIRIEEMKE   83 (123)
Q Consensus         6 veVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~y-kiGe~Fv~~~~~~a~e~LE~~~e   83 (123)
                      ...-..-|.-++.|-.|-+++..|-..+-.+..++..-.=.-+=| =+|.+- -.| .||.+.|.-+.-++.=-|+..++
T Consensus        11 ~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~R-KCfRmIgGvLVErTVkeVlP~L~~nke   89 (140)
T KOG4098|consen   11 AKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTR-KCFRMIGGVLVERTVKEVLPILQTNKE   89 (140)
T ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhh-HHHHHhccchhhhhHHHHhHHHHhhHH
Confidence            344556778889999888888888887777776665544343333 334432 444 49999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           84 VNSKTLEKLEKEKETVLAQMNELKK  108 (123)
Q Consensus        84 ~~~~ei~~le~~~~~i~~~m~eLK~  108 (123)
                      -++.-|..|...+.....+++.-|+
T Consensus        90 ~i~~~i~~l~~qL~~k~kElnkfk~  114 (140)
T KOG4098|consen   90 NIEKVIKKLTDQLVQKGKELNKFKK  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999888888775

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=91.05  E-value=1.1  Score=31.21  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             cceeeecChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           63 GEVFAHVPREE-VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        63 Ge~Fv~~~~~~-a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      +.+||++...- ++--++++.+-++.++..++..++.+...+..++.++
T Consensus        59 ~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~  107 (120)
T PF02996_consen   59 DKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQI  107 (120)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555443 2456899999999999999999999999999998765

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=91.02  E-value=1.8  Score=30.50  Aligned_cols=91  Identities=18%  Similarity=0.149  Sum_probs=70.9

Q ss_pred             HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCc-cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDED-IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK   96 (123)
Q Consensus        19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~-~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~   96 (123)
                      +-.+-+++..+..++...-..+..|+--..|. ++.++= .++ -=+.||-.+..--+..-.+.....+.++++.++..+
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~-~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i   83 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP-DDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV   83 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Confidence            34556777888888888888888888888888 766532 232 356678888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHH
Q 040215           97 ETVLAQMNELKKIL  110 (123)
Q Consensus        97 ~~i~~~m~eLK~~L  110 (123)
                      +.+..++..|...+
T Consensus        84 ~~lek~~~~l~~~l   97 (110)
T TIGR02338        84 KTLQRQEERLREQL   97 (110)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888887765

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=90.74  E-value=1.5  Score=30.51  Aligned_cols=85  Identities=19%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCc-cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           24 NRFHELEDEIKFAKETNDNLEDAGNEL-ILTDED-IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA  101 (123)
Q Consensus        24 ~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~-~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~  101 (123)
                      .++..+..++..+-..+..|+.-..|. ++-++- .++ -=+.||..+..--+..-.+.....+..+++.++.+++.+..
T Consensus         6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~   84 (105)
T cd00632           6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA-DDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER   84 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555 433321 111 23344444444444555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 040215          102 QMNELKKI  109 (123)
Q Consensus       102 ~m~eLK~~  109 (123)
                      .+..|-+.
T Consensus        85 ~~~~l~~~   92 (105)
T cd00632          85 QEEDLQEK   92 (105)
T ss_pred             HHHHHHHH
Confidence            55554443

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=86.19  E-value=6.4  Score=26.46  Aligned_cols=88  Identities=19%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215           16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL   92 (123)
Q Consensus        16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l   92 (123)
                      =..+..+++++..++.++.....-++.|..+.++  + ..-++.-|.....  -+.-..+.-.+.++...+.+.+.+..+
T Consensus        11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~--~~~~~L~~~~~~~~~~i~~l~~~~~~l   88 (106)
T PF01920_consen   11 NQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKE--EAIEELEERIEKLEKEIKKLEKQLKYL   88 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777888877777777777777777666  4 3334322333333  344555666777788888888888888


Q ss_pred             HHHHHHHHHHHHH
Q 040215           93 EKEKETVLAQMNE  105 (123)
Q Consensus        93 e~~~~~i~~~m~e  105 (123)
                      +.++.+++..+.+
T Consensus        89 ~~~l~~~~~~l~~  101 (106)
T PF01920_consen   89 EKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887777653

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK09343 prefoldin subunit beta; Provisional

Probab=84.56  E-value=7.9  Score=27.91  Aligned_cols=48  Identities=19%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215           68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR  115 (123)
Q Consensus        68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG  115 (123)
                      .-+.+.-.+.++...+.+++....++.++.+++..+.++-..+|.+=|
T Consensus        73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~  120 (121)
T PRK09343         73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG  120 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            344555666666777777777777777777777777777766666544

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=82.34  E-value=17  Score=28.45  Aligned_cols=83  Identities=25%  Similarity=0.310  Sum_probs=44.7

Q ss_pred             HhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           23 NNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQ  102 (123)
Q Consensus        23 n~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~  102 (123)
                      |+++..+...+..++...+.|..-.+++|..+...      ...-..........+......+...++.+..++...+.+
T Consensus        19 ~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~   92 (302)
T PF10186_consen   19 NNRLLELRSELQQLKEENEELRRRIEEILESDSNG------QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRER   92 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777778888888888887777775433221      111111112223333444445555555555555555555


Q ss_pred             HHHHHHHHH
Q 040215          103 MNELKKILY  111 (123)
Q Consensus       103 m~eLK~~LY  111 (123)
                      +.++|..|-
T Consensus        93 l~~~~~~l~  101 (302)
T PF10186_consen   93 LEELRESLE  101 (302)
T ss_pred             HHHHHHHHH
Confidence            555555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=82.09  E-value=6.8  Score=28.07  Aligned_cols=47  Identities=21%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             cceeeecc-eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           57 IVRFQIGE-VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM  103 (123)
Q Consensus        57 ~i~ykiGe-~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m  103 (123)
                      .|...+|+ ..+.=+.+++...|.....-++..|..|+.+++.-+.++
T Consensus        51 Ei~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl   98 (99)
T PF13758_consen   51 EIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL   98 (99)
T ss_pred             HHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47777887 566788999999999999999999999999998877654

>PRK01203 prefoldin subunit alpha; Provisional

Probab=81.67  E-value=19  Score=26.78  Aligned_cols=51  Identities=25%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             cceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           57 IVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK  107 (123)
Q Consensus        57 ~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK  107 (123)
                      .|..-|| ..||..+.+++.+.|.+..++++.-+......+..+...+++|-
T Consensus        70 kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         70 DLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             eEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555565 47899999999999999999999999999999999999999886

>PRK02224 chromosome segregation protein; Provisional

Probab=80.50  E-value=23  Score=32.49  Aligned_cols=82  Identities=21%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           26 FHELEDEIKFAKETNDNLEDAGNEL--ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM  103 (123)
Q Consensus        26 ~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m  103 (123)
                      +..+...+...+..+..+..+-.++  ++.+  .....+|-.|=.-+.......+......+...++.++.+++++....
T Consensus       421 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~  498 (880)
T PRK02224        421 RDELREREAELEATLRTARERVEEAEALLEA--GKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL  498 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444455554444  2222  24455777665555555555566666666667777777777777666


Q ss_pred             HHHHHH
Q 040215          104 NELKKI  109 (123)
Q Consensus       104 ~eLK~~  109 (123)
                      ..|+..
T Consensus       499 e~l~~~  504 (880)
T PRK02224        499 ERAEDL  504 (880)
T ss_pred             HHHHHH
Confidence            655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.9
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.9
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	97.91
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	97.88
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	94.69
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	88.34
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	86.68
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	85.69
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	85.21
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	85.2
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.43

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.90  E-value=1.3e-22  Score=142.14  Aligned_cols=110  Identities=14%  Similarity=0.228  Sum_probs=107.3

Q ss_pred             cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215            7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN   85 (123)
Q Consensus         7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~   85 (123)
                      ++..++|++||+|+++++++..+..++..++.++..++++.+|| ++++|..|++.||.|||+.+.++|...|+..++.+
T Consensus         3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A            3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL   82 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999 88888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215           86 SKTLEKLEKEKETVLAQMNELKKILYGKFRD  116 (123)
Q Consensus        86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~  116 (123)
                      +.+|+.|+.++..+..+|.+||..||++||.
T Consensus        83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999986

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.90  E-value=9.6e-23  Score=141.18  Aligned_cols=104  Identities=16%  Similarity=0.271  Sum_probs=101.7

Q ss_pred             HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215           12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLE   90 (123)
Q Consensus        12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~   90 (123)
                      =|+.||+|+++++++..+..++..++.++..++++.+|| ++++|.+|++.||.|||+.+.++|...|+..++.++.+|+
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999999999999999999 9898888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215           91 KLEKEKETVLAQMNELKKILYGKFR  115 (123)
Q Consensus        91 ~le~~~~~i~~~m~eLK~~LYaKFG  115 (123)
                      .|+.++..+..+|.+||..||++||
T Consensus        83 ~le~~~~~~~~~l~~lk~~l~~~~~  107 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999996

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=97.91  E-value=0.00043  Score=48.94  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=71.4

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC-CC--------------------ccceeeecc-eeee
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT-DE--------------------DIVRFQIGE-VFAH   68 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d-dd--------------------~~i~ykiGe-~Fv~   68 (123)
                      |+....+..+-.....+...+..++..+..+..+.+.|  |.. ++                    +.|..-||. +||.
T Consensus         4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE   83 (133)
T 1fxk_C            4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence            44555555555555666666666655555555555555  321 11                    125566994 9999


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .+.++|.+.|++..+.++..++.++..+..+..++..+-..|
T Consensus        84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l  125 (133)
T 1fxk_C           84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887665

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=97.88  E-value=0.00028  Score=51.30  Aligned_cols=101  Identities=11%  Similarity=0.134  Sum_probs=79.7

Q ss_pred             HHHHHHhHHHHhHHhhHHHHHHHHHHH---HHhhhhhhhhhhhh-hcC-CCccceeeec---------------------
Q 040215           10 WEDQQNINKFSKLNNRFHELEDEIKFA---KETNDNLEDAGNEL-ILT-DEDIVRFQIG---------------------   63 (123)
Q Consensus        10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~---k~~le~L~Da~~El-L~d-dd~~i~ykiG---------------------   63 (123)
                      .+=|+....+..+-.....+...+..+   ...+..+..+-+.| ... ++..+++.+|                     
T Consensus         9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~   88 (151)
T 2zdi_C            9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS   88 (151)
T ss_dssp             THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence            344566666677777777777777777   77777777777777 444 4444666655                     


Q ss_pred             ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        64 e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .+||..+.++|.+.|++..+.+...++.++..+..+..++..+...|
T Consensus        89 g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l  135 (151)
T 2zdi_C           89 GYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA  135 (151)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999988887765

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=94.69  E-value=0.58  Score=31.85  Aligned_cols=83  Identities=17%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           26 FHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE  105 (123)
Q Consensus        26 ~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e  105 (123)
                      ...|...++-+-++++|-+-..+-+  -.+-.+.--+.|..|.++.++|-+++|.+--....+|++|..+-.+|-.+++.
T Consensus        16 ir~lr~~~elkmkeleyaegiit~~--k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~   93 (99)
T 3aei_A           16 IRTLRQSLELKMKELEYAEGIITSL--KSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSK   93 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSS--CSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456666666777777755544333  11223444589999999999999999999999999999999999999999988


Q ss_pred             HHHHH
Q 040215          106 LKKIL  110 (123)
Q Consensus       106 LK~~L  110 (123)
                      |.+-|
T Consensus        94 l~~pl   98 (99)
T 3aei_A           94 LRAPL   98 (99)
T ss_dssp             C----
T ss_pred             hccCC
Confidence            87543

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=88.34  E-value=0.87  Score=30.62  Aligned_cols=88  Identities=16%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215           16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL   92 (123)
Q Consensus        16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l   92 (123)
                      -+++..+.+++..++.++.....-++.|+.+.++  + -.-++.-|.--+++  +.-..+.-.+.++...+.+.+.+..+
T Consensus        19 ~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~e--a~~~L~~~~e~ie~~i~~le~~~~~l   96 (117)
T 2zqm_A           19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDK--AVAELKEKIETLEVRLNALERQEKKL   96 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555554444433333333221  3 11121112222222  33334444555555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 040215           93 EKEKETVLAQMNE  105 (123)
Q Consensus        93 e~~~~~i~~~m~e  105 (123)
                      +.++.+++..+.+
T Consensus        97 ~~~l~~lk~~l~~  109 (117)
T 2zqm_A           97 NEKLKELTAQIQS  109 (117)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=86.68  E-value=5  Score=26.35  Aligned_cols=89  Identities=11%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215           14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLE   90 (123)
Q Consensus        14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~   90 (123)
                      +.-++...+.+++..++.++.....-++.|+.+.++  + -.-++.-|.--.++  +.-..+.-.+.++...+.+++.+.
T Consensus        12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e--~~~~L~~~~e~i~~~i~~le~~~~   89 (107)
T 1fxk_A           12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDE--LTEELQEKLETLQLREKTIERQEE   89 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555556666665555555444444433322  3 11221223333333  334445555666666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q 040215           91 KLEKEKETVLAQMN  104 (123)
Q Consensus        91 ~le~~~~~i~~~m~  104 (123)
                      .++.++.+++..+.
T Consensus        90 ~~~~~l~~lk~~l~  103 (107)
T 1fxk_A           90 RVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666665543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=85.69  E-value=2.2  Score=26.11  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           80 EMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .+.+.+..+.+.|..++..+..+..+|++.|
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777788888888888888888888766

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=85.21  E-value=5.2  Score=30.65  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             cceeeecceeeec--ChhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215           57 IVRFQIGEVFAHV--PREEV------------------EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF  114 (123)
Q Consensus        57 ~i~ykiGe~Fv~~--~~~~a------------------~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF  114 (123)
                      .|-+++|..=+.-  +..++                  ...|.+....++..++.+.++++++-..-.++=..||+||
T Consensus       103 ~I~~rLGsi~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF  180 (213)
T 1ik9_A          103 DVSFRLGSFNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF  180 (213)
T ss_dssp             SCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677778766663  33444                  2334444455666667777777777777777778899999

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=85.20  E-value=6.4  Score=26.21  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY  111 (123)
Q Consensus        73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY  111 (123)
                      ......+.....+..++..+..++..+..++..|...+-
T Consensus        64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777788888888888888888888877644

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.43  E-value=3.4  Score=25.35  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY  111 (123)
Q Consensus        75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY  111 (123)
                      ...|+...+.+..+...|..++..+..++..||..|-
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5667888888888888888999999999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.16
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.55

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.16  E-value=6.5e-10  Score=75.94  Aligned_cols=98  Identities=17%  Similarity=0.293  Sum_probs=94.2

Q ss_pred             HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215           13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK   91 (123)
Q Consensus        13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~   91 (123)
                      |..|+.|..+-..+..+...+..+..++...+-+.+|| ..++|.++...||.+||..+.++|...|...++.++.+++.
T Consensus         4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~   83 (107)
T d1fxka_           4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT   83 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999 88888878888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040215           92 LEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        92 le~~~~~i~~~m~eLK~~L  110 (123)
                      |+..+..+..+|.+++..|
T Consensus        84 l~~q~~~l~~~l~~~~~~l  102 (107)
T d1fxka_          84 IERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=0.0018  Score=43.85  Aligned_cols=54  Identities=20%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             cceeeecc-eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215           57 IVRFQIGE-VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL  110 (123)
Q Consensus        57 ~i~ykiGe-~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L  110 (123)
                      .|.+-||. +|+.++.++|.+.+++..+.++..++.+..++..+...+..+...+
T Consensus        71 ~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          71 EVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555554 7899999999999999999999999999999999999999988765