Citrus Sinensis ID: 040219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
VAAAPLLLFNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHcc
Coil and Loop (DISEMBL)
VAAAPLLLFNFtaasgrnkkspravsvemplmvpgtggslYEVLRIEPTTMISEIKTVYRSLVKvyhpdlsgngrdftKIHNAyetlsdpkarvvydmsl
Flexible Loop (DISEMBL)
vaaaplllfnftaasgrnkkspravsvemplmvpgtggSLYEVLRIEPTTMISEIKTVYRSLVKVYhpdlsgngrdfTKIHNayetlsdpkarvvydmsl
Low Complexity Region (SEG)
VAAAPLLLFNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMSL
Disordered region (IsUnstruct)
*****LLLFNFT****************MPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETL*************
Disordered Region (DISOPRED)
**********************************GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR*VYDM**
Disordered Region (DISEMBL)
VAAAPLLLFNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMSL
Disordered Region (DISPRO)
**AAPLLLFNFTAAS********************TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VAAAPLLLFNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.81	0.503	0.385	9e-10
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.62	0.200	0.460	2e-09
Q9SDN0	197	Chaperone protein dnaJ 20	no	no	0.62	0.314	0.411	2e-08
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.57	0.151	0.483	2e-08
B8DE39	376	Chaperone protein DnaJ OS	yes	no	0.57	0.151	0.483	2e-08
G2K045	377	Chaperone protein DnaJ OS	yes	no	0.57	0.151	0.483	2e-08
Q92BN9	376	Chaperone protein DnaJ OS	yes	no	0.57	0.151	0.483	2e-08
Q8WW22	397	DnaJ homolog subfamily A	yes	no	0.57	0.143	0.482	2e-08
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.58	0.151	0.451	3e-08
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.57	0.151	0.466	3e-08

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 15/96 (15%)

Query: 9   FNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHP 68
           + +T  S R  + PR ++      VP    SLY+VL +       +IK+ YR L ++ HP
Sbjct: 43  YTYTEDSPRLHQIPRRLTT-----VPA---SLYDVLEVPLGATSQDIKSAYRRLARICHP 94

Query: 69  DLSGNGR-------DFTKIHNAYETLSDPKARVVYD 97
           D++G  R       +F KIH AY TLSDP+ R VYD
Sbjct: 95  DVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYD 130

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-FTKIHNAYETLSDPKARVVYD 97
           +LY++L +  T  + EIKT Y+ L K YHPD++  G D F KI+NAY  LSD   +  YD
Sbjct: 2   TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 98  MSL 100
             L
Sbjct: 62  AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR------DFTKIHNAYETLSDPKA 92
           S Y++L +  +  + EIK  Y+ L + YHPD+S   R       F ++  AYETLSDP+ 
Sbjct: 66  SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRR 125

Query: 93  RVVYDMSL 100
           RV+YD  L
Sbjct: 126 RVLYDRDL 133

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL I  +    EIK  YR L K YHPD+   +G    F +I  AYE LSDP+ R  YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL I  +    EIK  YR L K YHPD+   +G    F +I  AYE LSDP+ R  YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL I  +    EIK  YR L K YHPD+   +G    F +I  AYE LSDP+ R  YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dnaJ PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL I  +    EIK  YR L K YHPD+   +G    F +I  AYE LSDP+ R  YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
          Y++L ++P+    EIK  YR L   YHPD + + G  F  I  AYE LSDPK R VYD
Sbjct: 8  YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

Homo sapiens (taxid: 9606)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVV 95
          LYE+L ++      EIK  YR L K YHPDL+   ++    F +I+ AYE LSDP+ R  
Sbjct: 6  LYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 65

Query: 96 YD 97
          YD
Sbjct: 66 YD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL +  +    EIK  YR L K YHPD+   +G    F +I  AYE LSDP+ R  YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.96	0.648	0.484	8e-17
255579560	168	chaperone protein DNAj, putative [Ricinu	0.62	0.369	0.617	3e-16
224061637	99	predicted protein [Populus trichocarpa]	0.62	0.626	0.637	1e-15
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.84	0.521	0.510	2e-15
224093380	142	predicted protein [Populus trichocarpa]	0.62	0.436	0.565	2e-14
15231204	157	chaperone DnaJ-domain containing protein	0.62	0.394	0.587	3e-14
297834156	157	DNAJ heat shock N-terminal domain-contai	0.62	0.394	0.587	3e-14
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.64	0.450	0.565	5e-14
118487648	171	unknown [Populus trichocarpa]	0.62	0.362	0.534	1e-13
224122088	171	predicted protein [Populus trichocarpa]	0.62	0.362	0.534	1e-13

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)

Query: 5   PLLLFNFTAASGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVK 64
           P+     +A S    ++P   S++  +       SLYEVLR++ T   +EIKT YRSL K
Sbjct: 15  PIHFRAGSAPSMSCSRNPCHASMQTLVEATRKPSSLYEVLRVKQTASPTEIKTAYRSLAK 74

Query: 65  VYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYDMSL 100
           +YHPD S    +GR+F +IHNAYETLSDP AR VYD+SL
Sbjct: 75  MYHPDASPVDSDGRNFIQIHNAYETLSDPAARAVYDLSL 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 6/68 (8%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPD------LSGNGRDFTKIHNAYETLSDPKA 92
           SLYE+LRI+ T  + EIKT YRSL K+YHPD      +  +GRDF +IHNAYETLSDP A
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 93  RVVYDMSL 100
           R +YD+SL
Sbjct: 132 RALYDLSL 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 47/69 (68%), Gaps = 7/69 (10%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-------GNGRDFTKIHNAYETLSDPK 91
           SLYE+LR+ PT    EIKT YRSL KVYHPD           G DF +IHNAYETLSDP 
Sbjct: 1   SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 92  ARVVYDMSL 100
           AR VYDMSL
Sbjct: 61  ARAVYDMSL 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 15  SGRNKKSPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-- 72
           S R + S RAV+  +    P T  SLYEVLR+ P     EIK+ YRSL KVYHPD +   
Sbjct: 37  SNRRRISIRAVTAAVETRRPAT--SLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARR 94

Query: 73  ----NGRDFTKIHNAYETLSDPKARVVYDMSL 100
               N  DF +I NAYETLSDP +R +YD+SL
Sbjct: 95  LQECNDGDFIEIRNAYETLSDPSSRQIYDLSL 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 7/69 (10%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-------NGRDFTKIHNAYETLSDPK 91
           SLYE+L+++ T  ++EIK  +RSL KVYHPD+SG       +G DF +I NAYETLSDP 
Sbjct: 46  SLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSGSDGGEQLDGLDFVEICNAYETLSDPA 105

Query: 92  ARVVYDMSL 100
           AR +YD+SL
Sbjct: 106 ARAMYDLSL 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRDFTKIHNAYETLSDPKARVVYD 97
           SLYE+L++  T  ++EIKT YRSL KVYHPD S  +GRDF +IH AY TL+DP  R +YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 98  MSL 100
            +L
Sbjct: 124 STL 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRDFTKIHNAYETLSDPKARVVYD 97
           SLYE+L++  T  ++EIKT YRSL KVYHPD S  +GRDF +IH AY TL+DP  R +YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 98  MSL 100
            +L
Sbjct: 124 STL 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 37  GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-----GNGRDFTKIHNAYETLSDPK 91
             SLYEVLRI+      EIK+ YR+L KVYHPD +      + RDF +IH+AYETLSDP 
Sbjct: 38  AASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYETLSDPS 97

Query: 92  ARVVYDMSL 100
           AR +YD+SL
Sbjct: 98  ARALYDLSL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 11/73 (15%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDL-----------SGNGRDFTKIHNAYETL 87
           SLY+VLR+ P     EIK+ YRSL K+YHPD              +G DF +IH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 88  SDPKARVVYDMSL 100
           SDP AR VYD+SL
Sbjct: 129 SDPTARAVYDLSL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 11/73 (15%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDL-----------SGNGRDFTKIHNAYETL 87
           SLY+VLR+ P     EIK+ YRSL K+YHPD              +G DF +IH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 88  SDPKARVVYDMSL 100
           SDP AR VYD+SL
Sbjct: 129 SDPTARAVYDLSL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.62	0.394	0.587	6e-16
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.69	0.431	0.460	5.8e-11
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.75	0.465	0.404	1.1e-09
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.62	0.314	0.426	2.9e-09
UNIPROTKB|C9JDE6	211	DNAJA4 "DnaJ homolog subfamily	0.57	0.270	0.482	3.6e-09
UNIPROTKB|F5H170	219	DNAJA4 "DnaJ homolog subfamily	0.57	0.260	0.482	3.9e-09
UNIPROTKB|F1NLH8	402	DNAJA4 "Uncharacterized protei	0.57	0.141	0.482	6.9e-09
UNIPROTKB|Q5ZJV3	397	DNAJA1 "Uncharacterized protei	0.57	0.143	0.482	8.6e-09
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.59	0.151	0.483	1.1e-08
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.57	0.165	0.459	1.9e-08

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query:    39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRDFTKIHNAYETLSDPKARVVYD 97
             SLYE+L++  T  ++EIKT YRSL KVYHPD S  +GRDF +IH AY TL+DP  R +YD
Sbjct:    64 SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query:    98 MSL 100
              +L
Sbjct:   124 STL 126

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 35/76 (46%), Positives = 45/76 (59%)

Query:    28 EMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD------FTKIH 81
             ++P     T  SLYE+L I   +   EIK+ YR L ++ HPD++ N RD      F KIH
Sbjct:    58 QIPQRFSATA-SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIH 116

Query:    82 NAYETLSDPKARVVYD 97
              AY TLSDP+ R VYD
Sbjct:   117 AAYCTLSDPEKRAVYD 132

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query:    21 SPRAVSVEMPLMVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR----- 75
             SPR   +  P  +     SLY+VL +       +IK+ YR L ++ HPD++G  R     
Sbjct:    49 SPRLHQI--PRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSS 106

Query:    76 --DFTKIHNAYETLSDPKARVVYD 97
               +F KIH AY TLSDP+ R VYD
Sbjct:   107 ADEFMKIHAAYCTLSDPEKRSVYD 130

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query:    39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR-----D-FTKIHNAYETLSDPKA 92
             S Y++L +  +  + EIK  Y+ L + YHPD+S   R     D F ++  AYETLSDP+ 
Sbjct:    66 SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRR 125

Query:    93 RVVYDMSL 100
             RV+YD  L
Sbjct:   126 RVLYDRDL 133

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

UNIPROTKB|C9JDE6 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query:    41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
             Y++L ++P+    EIK  YR L   YHPD + + G  F  I  AYE LSDPK R VYD
Sbjct:     8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F5H170 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query:    41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
             Y++L ++P+    EIK  YR L   YHPD + + G  F  I  AYE LSDPK R VYD
Sbjct:     8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NLH8 DNAJA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query:    41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRDFTKIHNAYETLSDPKARVVYD 97
             Y++L+++PT    EIK  YR L   YHPD +   G  F  I  AYE LSDPK R +YD
Sbjct:    12 YDILQVKPTASSEEIKRAYRKLALKYHPDKNPSEGERFKLISQAYEVLSDPKKRDLYD 69

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5ZJV3 DNAJA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 28/58 (48%), Positives = 34/58 (58%)

Query:    41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
             Y+VL + P     E+K  YR L   YHPD + N G  F +I  AYE LSDPK R +YD
Sbjct:     8 YDVLGVSPNASAEELKKAYRKLALKYHPDKNHNEGEKFKQISQAYEVLSDPKKRDLYD 65

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0030317 "sperm motility" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query:    39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-FTKIHNAYETLSDPKARVVYD 97
             +LY+VLR+ P     EIK  YR L K +HPD + +  D F +I  AYE LSDP+ R +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
 Identities = 28/61 (45%), Positives = 35/61 (57%)

Query:    41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTK----IHNAYETLSDPKARVVY 96
             Y VL + P     EIK  Y + +K  HPDLSGN  + T     I++ YE LSDP  R+VY
Sbjct:    78 YAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVY 137

Query:    97 D 97
             D
Sbjct:   138 D 138

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033470001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (148 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.498
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.497
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)			•						0.495
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.495
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.495
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.494
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.494
	GSVIVG00019978001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (574 aa)			•						0.490
	GSVIVG00024357001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)			•						0.489
	GSVIVG00018506001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)			•						0.489

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-16
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-13
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-13
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-12
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-11
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-11
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-11
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	7e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	8e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-10
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	8e-10
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-09
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-09
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-09
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	5e-09
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	9e-09
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-08
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-08
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-08
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-08
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-08
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-08
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	7e-08
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	8e-08
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	9e-08
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-07
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	8e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	6e-06
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	9e-06
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	4e-05
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-04
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	6e-04

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 66.4 bits (163), Expect = 2e-16
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSDPKARVV 95
           YE+L +       EIK  YR L   YHPD +         F +I+ AYE LSDP+ R +
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 96 YD 97
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 59.2 bits (144), Expect = 2e-13
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPK 91
            YE+L +     + EIK  YR L   YHPD +          F +I+ AYE LSDP+
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS----GNGRDFTKIHNAYETLSDPKARV 94
            YE+L +       EIK  YR L K YHPD +         F +I+ AYE LSDP+ R 
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 95 VYDM 98
           YD 
Sbjct: 65 AYDQ 68

Length = 371

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 28/58 (48%), Positives = 34/58 (58%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97
          LYEVL +      SEIK  YR L   +HPD  G+   F +I  AYE LSDP+ R +YD
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 56.0 bits (136), Expect = 3e-12
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSD 89
          Y++L + P     EIK  YR L   YHPD + +       F +I+ AYE LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YE+L +       EIK  YR L K YHPD +        F +I+ AYE LSDP+ R  YD
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 98 M 98
           
Sbjct: 63 Q 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNG---RDFTKIHNAYETLSDPKARVV 95
           YE+L ++      EIK  YR L K YHPDL+ G+    + F +I+ AYE LSDP+ R  
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 96 YD 97
          YD
Sbjct: 67 YD 68

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVY 96
           Y+ L +       EIK  YR L K YHPD++   G    + ++  AYETLSDP+ R  Y
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65

Query: 97 D 97
          D
Sbjct: 66 D 66

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
          YE+L +       EIK  YR L + YHPD + N      F +I+ AY+ LSDP+ R +YD
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 98 M 98
           
Sbjct: 66 Q 66

Length = 382

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL +  +    EIK  YR L K YHPD++   G    F +I  AYE LSD + R  YD
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAYETLSDPKARVV 95
          YE+L +       EIK  Y+ LVK +HPD     R      F +I  AYE LSDP+ R +
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 96 YD 97
          YD
Sbjct: 67 YD 68

Length = 369

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 53.7 bits (128), Expect = 8e-10
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YEVL I+      EIK  +R L K YHPD      D    F +I+ A + LS+PK R  Y
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 97 D 97
          D
Sbjct: 64 D 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
          Y ++ ++PT  +  IKT YR L + YHPD+S        F ++  A+E LSD + R  YD
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL-SGNG---RDFTKIHNAYETLSDPKARVVY 96
          Y +L +  T    EIK  YR L   YHPD   G+    + F ++  AYE LSD + R  Y
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 97 D 97
          D
Sbjct: 64 D 64

Length = 391

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YE+L +  T    EIK+ YR L   YHPD +   G    F +I+ AY  LSD + R  YD
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD------FTKIHNAYETLSDPKARV 94
          YEVL +       EIK  YR L   YHPD   N  D      F +I  AYE LSDP+ R 
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 95 VYD 97
           YD
Sbjct: 65 AYD 67

Length = 371

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG--NGRD-FTKIHNAYETLSDPKARVVYD 97
          YEVL ++    + E+K  YR L + YHPD++   +  D F ++  AY+TLSDP+ +  YD
Sbjct: 7  YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRD----FTKIHNAYETLSDPKARVV 95
          Y++L ++      +IK  +R L K +HPDL  GN  +    F +I  AYE LSDP+ R  
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 96 YD 97
          YD
Sbjct: 66 YD 67

Length = 365

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYD 97
          Y +L +      +EIK  YR L +  HPD++ +      F +I  AYE LSDP+ R + D
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65

Query: 98 M 98
          +
Sbjct: 66 L 66

Length = 378

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 50.2 bits (119), Expect = 9e-09
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 39  SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAYETLSDPKAR 93
             YE+L + P   + EIK  YR L   YHPD +          F +I+ AYE LSDP+ R
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 94  VVYDMSL 100
             YD   
Sbjct: 67  AEYDKIG 73

Length = 237

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARV 94
             YE+L +       E+K  YR L + YHPD++   G    F +I+ AYE LSDP+ R 
Sbjct: 3  ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 95 VYD 97
           YD
Sbjct: 63 RYD 65

Length = 374

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL ++      EIK  YR L + YHPD+S   G    F +I  AY  LSD + R  YD
Sbjct: 8  YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YE+L +       EIK  YR L   YHPD +   ++    F +   AYE LSDPK R +Y
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 97 D 97
          D
Sbjct: 67 D 67

Length = 366

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YEVL +E      EIK  +R L   YHPD +   ++    F +I+ AY+ LSDP+ +  Y
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 97 D 97
          D
Sbjct: 67 D 67

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGR---DFTKIHNAYETLSDPKARVVY 96
          Y+VL +      +EIK  YR L + YHPD + G+ +    F +I  AY+ LSD K R  Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 97 D 97
          D
Sbjct: 72 D 72

Length = 389

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YEVL +  T  + EIK  YR     YHPD +   ++    F +   AY+ LSDP  R  Y
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 97 D 97
          D
Sbjct: 68 D 68

Length = 386

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 48.5 bits (115), Expect = 6e-08
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
          Y++L +  T   +++K  Y  L K YHPD +      + F +I+ AY+ L D + R  YD
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
          S YE+L +E  +    IK  YR L   YHPD +   ++    F  I+ AY  LSD K R 
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 95 VYD 97
          +YD
Sbjct: 64 LYD 66

Length = 369

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          YEVL +  T    EI+  YR L K YHPDL           +I+ A + L D   R  YD
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66

Length = 372

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 8e-08
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
          S Y++L +  +    EIK+ YR L   YHPD +   ++    F +   AYE L DPK R 
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 95 VYD 97
           YD
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YE+L +     + +IK  YR L   YHPD +        F +I  AY  LSD + R  YD
Sbjct: 8  YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67

Length = 377

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YEVL +  +    EIK  YR L   YHPD + + ++    F +++ AYE LS+   R  Y
Sbjct: 6  YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 97 D 97
          D
Sbjct: 66 D 66

Length = 397

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          Y +L +       EIK  ++ L + YHPD++   G    F +I+ AY  LSDP+ R +YD
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YE+L +       EIK  YR +   YHPD +   ++    F +   AYE L D   R  Y
Sbjct: 6  YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 97 D 97
          D
Sbjct: 66 D 66

Length = 365

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YEVL +       EIK  YR L   YHPD + +  +    F +   AYE L D + R  Y
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 97 D 97
          D
Sbjct: 67 D 67

Length = 373

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 44  LRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD------FTKIHNAYETLSDPKARVVYD 97
            R +      +I   ++  V  YHPD +  G +      F  I  A E L D K R+ YD
Sbjct: 54  YRTKAIP--PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111

Length = 379

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 59  YRSLVKVYHPDLSGNGRDF-------TKIHNAYETLSDPKARVVYDMSL 100
           YR L   YHPD SG  ++        T ++ AY TL DP  R  Y + L
Sbjct: 12  YRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKL 60

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GN---GRDFTKIHNAYETLSDPKARVVY 96
          Y+ L +       EIK  YR L +  HPD + G+      F  +  A++ LSDP  R  Y
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71

Query: 97 D 97
          D
Sbjct: 72 D 72

Length = 392

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 41  YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTK---------IHNAYETLSDPK 91
           YE+L I+  T   +IK  YR L   +HPD +    +  +         I  AY  L+D K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 92  ARVVY 96
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 41  YEVLRIEPTTMISEIKTVYRSLVKVYHPD-LSGNGR----------DFTKIHNAYETL 87
            +VL +E       IK  YR L+   HPD  +  G              +I  AYE +
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.92
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.87
PRK14288	369	chaperone protein DnaJ; Provisional	99.86
PRK14296	372	chaperone protein DnaJ; Provisional	99.85
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.84
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14279	392	chaperone protein DnaJ; Provisional	99.83
PRK14286	372	chaperone protein DnaJ; Provisional	99.83
PRK14282	369	chaperone protein DnaJ; Provisional	99.82
PRK14287	371	chaperone protein DnaJ; Provisional	99.82
PRK14299	291	chaperone protein DnaJ; Provisional	99.82
PRK14276	380	chaperone protein DnaJ; Provisional	99.81
PRK14298	377	chaperone protein DnaJ; Provisional	99.81
PRK14285	365	chaperone protein DnaJ; Provisional	99.81
PRK14283	378	chaperone protein DnaJ; Provisional	99.81
PRK14291	382	chaperone protein DnaJ; Provisional	99.81
PRK14295	389	chaperone protein DnaJ; Provisional	99.81
PRK14278	378	chaperone protein DnaJ; Provisional	99.81
PRK14277	386	chaperone protein DnaJ; Provisional	99.81
PRK14280	376	chaperone protein DnaJ; Provisional	99.8
PRK14294	366	chaperone protein DnaJ; Provisional	99.8
PRK14301	373	chaperone protein DnaJ; Provisional	99.8
PRK14284	391	chaperone protein DnaJ; Provisional	99.8
PRK14297	380	chaperone protein DnaJ; Provisional	99.8
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14281	397	chaperone protein DnaJ; Provisional	99.79
PRK10767	371	chaperone protein DnaJ; Provisional	99.79
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14300	372	chaperone protein DnaJ; Provisional	99.78
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14290	365	chaperone protein DnaJ; Provisional	99.78
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.78
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.77
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.77
PRK14292	371	chaperone protein DnaJ; Provisional	99.77
PRK14293	374	chaperone protein DnaJ; Provisional	99.77
PRK14289	386	chaperone protein DnaJ; Provisional	99.77
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.75
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.75
PHA03102	153	Small T antigen; Reviewed	99.74
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.72
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.71
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK05014	171	hscB co-chaperone HscB; Provisional	99.7
PRK01356	166	hscB co-chaperone HscB; Provisional	99.7
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.67
PRK00294	173	hscB co-chaperone HscB; Provisional	99.66
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.66
PRK03578	176	hscB co-chaperone HscB; Provisional	99.66
PTZ00100	116	DnaJ chaperone protein; Provisional	99.62
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.59
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PHA02624	647	large T antigen; Provisional	99.52
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.52
PRK01773	173	hscB co-chaperone HscB; Provisional	99.49
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.39
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.33
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.29
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.08
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.04
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.92
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.72
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.49
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.32
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.54
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.47
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.29
KOG0431	453	consensus Auxilin-like protein and related protein	96.95
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	94.5
PF13446	62	RPT: A repeated domain in UCH-protein	94.41
KOG3442	132	consensus Uncharacterized conserved protein [Funct	90.93
KOG0724	335	consensus Zuotin and related molecular chaperones	89.58
COG5552	88	Uncharacterized conserved protein [Function unknow	89.15
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	88.96

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.7e-25  Score=165.24  Aligned_cols=63  Identities=41%  Similarity=0.694  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-N---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .+|||+||||+++||.+|||+|||+|+++||||+++ +   +++|++|++||+|||||++|+.||++
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~f   69 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQF   69 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence            589999999999999999999999999999999999 3   67999999999999999999999975

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=7.5e-24  Score=154.93  Aligned_cols=65  Identities=40%  Similarity=0.650  Sum_probs=61.3

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...+|||+||||+.+|+..|||+|||+|++++|||++++    ++.|+.|+.||+|||||.+|+.||++
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~   81 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY   81 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            356999999999999999999999999999999999997    56899999999999999999999974

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.87  E-value=4.1e-22  Score=151.15  Aligned_cols=62  Identities=45%  Similarity=0.722  Sum_probs=60.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++||.+|||+|||+++++||||++++.++|++|++||++|+||.+|..||+
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~   88 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE   88 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence            47999999999999999999999999999999999888999999999999999999999996

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=5.5e-22  Score=148.35  Aligned_cols=62  Identities=40%  Similarity=0.614  Sum_probs=58.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++||.+|||+|||+++++||||+++.    .++|++|++||+||+||.+|+.||+.
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~   68 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRY   68 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            799999999999999999999999999999999873    57899999999999999999999973

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.7e-21  Score=145.85  Aligned_cols=63  Identities=37%  Similarity=0.554  Sum_probs=59.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|+.||+.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~   68 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF   68 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence            3799999999999999999999999999999999864   57899999999999999999999973

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.84  E-value=2.8e-21  Score=111.64  Aligned_cols=59  Identities=46%  Similarity=0.776  Sum_probs=55.7

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHhCChhHHHHhh
Q 040219           39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-G----RDFTKIHNAYETLSDPKARVVYD   97 (100)
Q Consensus        39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~----~~~~~i~~Ay~~L~dp~~R~~Yd   97 (100)
                      |||+||||+++++.++|+++|+++++.+|||+++. .    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999765 3    58999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.3e-21  Score=141.94  Aligned_cols=63  Identities=43%  Similarity=0.772  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...+|+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||++||||++|..||+.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~   66 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQY   66 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            5789999999999999999999999999999999997 57999999999999999999999974

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=4.9e-21  Score=144.19  Aligned_cols=63  Identities=32%  Similarity=0.539  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    .++|++|++||++|+||.+|+.||+.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~   74 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET   74 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence            4799999999999999999999999999999999873    47899999999999999999999973

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1e-20  Score=141.65  Aligned_cols=63  Identities=38%  Similarity=0.624  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||+++.    .++|++|++||+||+||.+|+.||+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~   69 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQF   69 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            3699999999999999999999999999999999863    47999999999999999999999963

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.1e-20  Score=139.79  Aligned_cols=63  Identities=40%  Similarity=0.685  Sum_probs=58.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||+++.     .++|++|++||++|+||.+|+.||+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~   70 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRF   70 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhc
Confidence            3799999999999999999999999999999999864     46899999999999999999999963

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.6e-20  Score=139.44  Aligned_cols=62  Identities=37%  Similarity=0.748  Sum_probs=58.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   +++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~   67 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ   67 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence            3699999999999999999999999999999999864   4689999999999999999999996

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3.3e-20  Score=135.00  Aligned_cols=63  Identities=33%  Similarity=0.645  Sum_probs=59.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|..||+.
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~   68 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTY   68 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence            3799999999999999999999999999999999864   57899999999999999999999963

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.1e-20  Score=139.33  Aligned_cols=62  Identities=39%  Similarity=0.716  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|+.||+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   67 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQ   67 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence            3799999999999999999999999999999999864   5789999999999999999999996

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=2.9e-20  Score=139.43  Aligned_cols=63  Identities=35%  Similarity=0.613  Sum_probs=58.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|+.||+.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~   69 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRF   69 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence            3699999999999999999999999999999999864   56899999999999999999999973

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.7e-20  Score=138.34  Aligned_cols=62  Identities=34%  Similarity=0.527  Sum_probs=58.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++    .++|++|++||++|+||.+|..||+.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~   68 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRF   68 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence            699999999999999999999999999999999874    46899999999999999999999973

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.2e-20  Score=138.55  Aligned_cols=62  Identities=40%  Similarity=0.662  Sum_probs=58.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|..||+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~   68 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ   68 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence            4799999999999999999999999999999999863   5799999999999999999999996

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.4e-20  Score=138.12  Aligned_cols=63  Identities=40%  Similarity=0.721  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.++||+|||+++++||||++++   .++|++|++||++|+||.+|..||+.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~   67 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQF   67 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence            3799999999999999999999999999999999864   57899999999999999999999974

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.8e-20  Score=138.74  Aligned_cols=62  Identities=39%  Similarity=0.635  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||++|+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            3699999999999999999999999999999999863    4789999999999999999999997

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.4e-20  Score=137.99  Aligned_cols=61  Identities=36%  Similarity=0.632  Sum_probs=58.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|..||+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~   66 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDL   66 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence            699999999999999999999999999999999875   4589999999999999999999996

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=6.3e-20  Score=137.95  Aligned_cols=61  Identities=44%  Similarity=0.774  Sum_probs=58.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||++|+||.+|..||+
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~   69 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ   69 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            699999999999999999999999999999999874    4689999999999999999999996

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=6.9e-20  Score=137.33  Aligned_cols=62  Identities=42%  Similarity=0.688  Sum_probs=58.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+||.+|+.||+.
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~   68 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQF   68 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhc
Confidence            699999999999999999999999999999999864   57999999999999999999999973

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9e-20  Score=136.28  Aligned_cols=63  Identities=40%  Similarity=0.605  Sum_probs=58.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    .+.|++|++||++|+||.+|+.||+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~   69 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQY   69 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            3799999999999999999999999999999999874    46899999999999999999999963

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.4e-20  Score=136.78  Aligned_cols=63  Identities=37%  Similarity=0.573  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.++||+|||+++++||||++++    .++|++|++||++|+||.+|+.||+.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~   69 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRF   69 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence            3799999999999999999999999999999999874    45899999999999999999999963

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.5e-20  Score=137.16  Aligned_cols=62  Identities=37%  Similarity=0.599  Sum_probs=58.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++    .++|++|++||++|+||.+|+.||+.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~   66 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRY   66 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence            489999999999999999999999999999999874    56899999999999999999999963

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=7.9e-20  Score=137.14  Aligned_cols=62  Identities=39%  Similarity=0.641  Sum_probs=58.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||++|+||.+|+.||+.
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   69 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF   69 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence            699999999999999999999999999999999874    46899999999999999999999973

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.4e-19  Score=131.64  Aligned_cols=63  Identities=40%  Similarity=0.710  Sum_probs=59.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+..|||+||++|+++||||.+.+   .+.|++|.+||++|+|+++|.+||..
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~  107 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVY  107 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            3499999999999999999999999999999999886   56899999999999999999999975

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.6e-19  Score=136.18  Aligned_cols=62  Identities=37%  Similarity=0.598  Sum_probs=58.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++    .+.|++|++||++|+||.+|..||+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   68 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQF   68 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            699999999999999999999999999999999874    46899999999999999999999963

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.2e-19  Score=134.35  Aligned_cols=63  Identities=41%  Similarity=0.667  Sum_probs=58.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    .+.|++|++||++|+||.+|..||+.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~   69 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQY   69 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence            3799999999999999999999999999999999873    46899999999999999999999963

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.8e-19  Score=127.79  Aligned_cols=63  Identities=44%  Similarity=0.696  Sum_probs=59.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..++|+||||+++++.++||++||++++++|||++++    .++|++||+||+||+||.+|..||..
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~   96 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY   96 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence            5789999999999999999999999999999999886    46899999999999999999999975

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.9e-19  Score=133.15  Aligned_cols=62  Identities=32%  Similarity=0.624  Sum_probs=58.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++|+.+|||+|||+++++||||++++   .++|++|++||++|+|+.+|..||++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   67 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRF   67 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhc
Confidence            699999999999999999999999999999999863   56899999999999999999999973

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3e-19  Score=135.04  Aligned_cols=65  Identities=43%  Similarity=0.636  Sum_probs=60.7

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      +...+.||+||||..+++..+||++||+++++||||+++.     .++|+.|+.||+|||||..|+.||.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~   73 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS   73 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence            4466899999999999999999999999999999999885     5689999999999999999999995

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=4.4e-19  Score=132.52  Aligned_cols=61  Identities=38%  Similarity=0.696  Sum_probs=57.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++|+.+|||+|||++++++|||++++     .++|++|++||++|+||.+|..||.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~   68 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ   68 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence            699999999999999999999999999999999864     3689999999999999999999996

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.78  E-value=4.9e-19  Score=131.66  Aligned_cols=60  Identities=43%  Similarity=0.749  Sum_probs=57.0

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      |||+||||+++|+.+|||+||++++++||||+++.   .++|++|++||++|+|+.+|..||+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~   63 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQ   63 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence            79999999999999999999999999999999863   5789999999999999999999996

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.77  E-value=6.4e-19  Score=100.25  Aligned_cols=54  Identities=41%  Similarity=0.720  Sum_probs=50.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChh
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPK   91 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~   91 (100)
                      +|||+||||+++++.++||++|+++++.+|||++++     .+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999883     578999999999999985

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.77  E-value=6e-19  Score=129.16  Aligned_cols=61  Identities=38%  Similarity=0.705  Sum_probs=57.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++++.+|||+|||++++++|||+++.   ++.|++|++||++|+||.+|+.||.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~   67 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ   67 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            699999999999999999999999999999999863   6799999999999999999999996

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.4e-19  Score=131.84  Aligned_cols=61  Identities=39%  Similarity=0.652  Sum_probs=58.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++|+.++||+||+++++++|||++++   +++|++|++||++|+||.+|+.||+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~   65 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDR   65 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence            589999999999999999999999999999999874   5789999999999999999999996

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=8.5e-19  Score=131.34  Aligned_cols=61  Identities=39%  Similarity=0.728  Sum_probs=58.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .|||+||||+++++.+|||+|||++++++|||++++   .++|++|++||++|+||.+|+.||.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~   66 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQ   66 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence            699999999999999999999999999999999864   5789999999999999999999996

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=9.9e-19  Score=131.42  Aligned_cols=62  Identities=39%  Similarity=0.641  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    .++|++|++||++|+||.+|+.||+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~   69 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQ   69 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3799999999999999999999999999999999874    4689999999999999999999996

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.4e-18  Score=126.52  Aligned_cols=63  Identities=35%  Similarity=0.588  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||.||||+.+++..+|+++|+..+++||||++++    .+.|+.+.+||+||+|+..|..||..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~   70 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKL   70 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5899999999999999999999999999999999997    46899999999999999999999974

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.75  E-value=3.2e-18  Score=95.72  Aligned_cols=51  Identities=41%  Similarity=0.729  Sum_probs=48.2

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCC
Q 040219           39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSD   89 (100)
Q Consensus        39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d   89 (100)
                      |||+||||+++++.++||++|+++++.+|||++++    .+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999885    5689999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.74  E-value=2.4e-18  Score=115.07  Aligned_cols=62  Identities=13%  Similarity=0.301  Sum_probs=59.1

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..+|+||||++++  |.++||+|||++++++|||++++++.|++|++||++|+|+..|..||..
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~   68 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDG   68 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcccccc
Confidence            5679999999999  9999999999999999999999999999999999999999999999863

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.1e-18  Score=129.85  Aligned_cols=63  Identities=38%  Similarity=0.692  Sum_probs=58.8

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .+.+||.+|+|+++||.+||++|||++++.+|||+..+       ++.|+.|.+||+||+||.+|+.||.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~   76 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN   76 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            35699999999999999999999999999999999874       5689999999999999999999995

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.72  E-value=1.3e-17  Score=135.05  Aligned_cols=64  Identities=25%  Similarity=0.417  Sum_probs=59.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...+||+||||+++|+..+||+|||+++++||||++++   ..+|+.|++||++|+||.+|..||..
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~  637 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKF  637 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence            45899999999999999999999999999999999874   46899999999999999999999973

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.4e-17  Score=117.26  Aligned_cols=65  Identities=35%  Similarity=0.559  Sum_probs=59.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|+|+||||..+|+..+|++||+++++++|||++..      .+.|++++.+|.||+|..+|+.||.+
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet   81 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDET   81 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            345699999999999999999999999999999999963      45899999999999999999999964

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.2e-17  Score=115.04  Aligned_cols=63  Identities=35%  Similarity=0.547  Sum_probs=58.0

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG----NGRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~----~~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..-|+||||||+++++..|||++||+|++++|||+.+    +++.+..|.+||+.|+|+..|+.|..
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ek  163 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEK  163 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            4579999999999999999999999999999999954    46689999999999999999999975

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=4.5e-17  Score=110.88  Aligned_cols=62  Identities=24%  Similarity=0.425  Sum_probs=55.3

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++  ++..+|+++|+++++++|||+..+         .+.+..|++||++|+||.+|+.|+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            489999999996  688999999999999999999764         23688999999999999999999854

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=5.2e-17  Score=110.10  Aligned_cols=63  Identities=24%  Similarity=0.373  Sum_probs=55.9

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGNG-------RDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~-------~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      .|||+||||+++  ++..+|+++|+++.+++|||+..+.       +.+..|++||+||+||.+|+.|+..|
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            589999999987  6899999999999999999998752       24679999999999999999997643

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.1e-16  Score=109.06  Aligned_cols=63  Identities=41%  Similarity=0.690  Sum_probs=59.0

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ...+||+||||+++++..||+++|+++++++|||+++.     .+.|..|++||++|+|+..|..||.
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~   71 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDK   71 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence            35799999999999999999999999999999999885     3789999999999999999999996

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=2.5e-16  Score=107.38  Aligned_cols=64  Identities=23%  Similarity=0.455  Sum_probs=57.2

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      +..|||++|||++.  .+..+|+++|+++++++|||+..+         .+.+..||+||++|+||.+|+.|+..
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~   76 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA   76 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            45899999999998  578999999999999999999764         23689999999999999999999864

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.66  E-value=1.8e-16  Score=126.10  Aligned_cols=62  Identities=40%  Similarity=0.612  Sum_probs=58.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++++..+||++||++++++|||++++   ...|+.|++||++|+||.+|..||..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~f   66 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKY   66 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence            689999999999999999999999999999999875   35799999999999999999999963

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=3.1e-16  Score=107.18  Aligned_cols=63  Identities=22%  Similarity=0.346  Sum_probs=55.6

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++  ++..+|+++|+++++++|||++++         .+.+..||+||++|+||.+|+.|+..
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            3799999999986  589999999999999999999764         22468999999999999999999854

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.62  E-value=9.6e-16  Score=98.24  Aligned_cols=53  Identities=26%  Similarity=0.400  Sum_probs=50.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS   88 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   88 (100)
                      ...++|+||||+++++.+||+++||++++++|||++++.+.+.+|++||++|.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999988999999999999985

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.59  E-value=1.2e-15  Score=113.46  Aligned_cols=65  Identities=31%  Similarity=0.503  Sum_probs=60.1

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChH-------HHHHHHHHHHHhCChhHHHHhhc
Q 040219           34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR-------DFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~-------~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ....+|||+||||.++|+..||.+|||+++.+||||...+++       +|..|..|-+||+||++|..||.
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn  461 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN  461 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence            346799999999999999999999999999999999988743       69999999999999999999996

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.8e-15  Score=114.61  Aligned_cols=65  Identities=26%  Similarity=0.395  Sum_probs=61.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      ...|+|.+|||+.+++.++||+.||+++...||||+..   +|.|+.++.||++|+|+.+|..||.++
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            37999999999999999999999999999999999874   789999999999999999999999764

>PHA02624 large T antigen; Provisional

Probab=99.52  E-value=1.4e-14  Score=113.73  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=58.4

Q ss_pred             CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219           36 TGGSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY   96 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y   96 (100)
                      ...++|++|||++++  +.++||+|||++++++|||++++.+.|++|++||++|+|+.++..|
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            357899999999999  9999999999999999999999999999999999999999999998

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=6.4e-15  Score=105.28  Aligned_cols=65  Identities=35%  Similarity=0.541  Sum_probs=60.2

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ++..|+|+||||.+.++..||.+|||+|++++|||++.+   .+.|..|..||++|.|.+.|..||-.
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            467899999999999999999999999999999999886   45799999999999999999999853

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=8.3e-14  Score=95.00  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=55.5

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||++|||++.  .+...+++.|+++.+.+|||+..+         .+....||+||.+|+||.+|+.|-..
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~   74 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA   74 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence            689999999987  799999999999999999999764         23578999999999999999999654

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.45  E-value=1e-13  Score=100.11  Aligned_cols=54  Identities=31%  Similarity=0.400  Sum_probs=48.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHhCC
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETLSD   89 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d   89 (100)
                      ...++|+||||++++|.++||++||+++++||||+..+           .++|++|++||++|+.
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999632           3689999999999974

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.1e-13  Score=104.41  Aligned_cols=65  Identities=35%  Similarity=0.560  Sum_probs=59.9

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHHhhc
Q 040219           34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .++..+||.||||..+++..||+++||++++.+|||++.+.     ..|+++.+||.+|+||.+|.+||.
T Consensus       369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds  438 (486)
T KOG0550|consen  369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS  438 (486)
T ss_pred             HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence            34578999999999999999999999999999999998863     379999999999999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.5e-13  Score=95.59  Aligned_cols=63  Identities=41%  Similarity=0.694  Sum_probs=57.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..++|+||||.++++..+|++||+++++.+|||+++..     .+|.+|.+||++|+|+.+|..||+.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~   69 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQY   69 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence            46899999999999999999999999999999997754     3588999999999999999999974

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.33  E-value=1.4e-12  Score=99.37  Aligned_cols=62  Identities=35%  Similarity=0.501  Sum_probs=57.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .-|+||||||..+++..+||++||+|+.++|||+.+.         ++.+.+|++||..|+|...|+.|-.
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~  167 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN  167 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            4689999999999999999999999999999999876         5679999999999999999999864

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.29  E-value=7.7e-12  Score=84.14  Aligned_cols=51  Identities=33%  Similarity=0.519  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           50 TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        50 a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      .+..+|+++|+++++++|||+.++         .+.+..||+||++|+||.+|+.|+..|
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            478899999999999999998653         246899999999999999999998653

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.3e-10  Score=84.21  Aligned_cols=65  Identities=29%  Similarity=0.385  Sum_probs=57.7

Q ss_pred             CCCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           34 PGTGGSLYEVLRIEP---TTMISEIKTVYRSLVKVYHPDLSG------NGRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~~------~~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .++..|+|.+|||+.   .++..+|.++.++.+.+||||+..      ..+.|..|+.||++|+|+..|.+||-
T Consensus        39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS  112 (379)
T COG5269          39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS  112 (379)
T ss_pred             hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence            446699999999975   588999999999999999999963      26789999999999999999999983

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=3.7e-10  Score=78.52  Aligned_cols=60  Identities=32%  Similarity=0.506  Sum_probs=54.1

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHH
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVV   95 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~   95 (100)
                      -+-|+|+||.|.|..+.++||+.||+++...|||+++++     ..|.-+.+||..|-|+..|..
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            357999999999999999999999999999999999974     468999999999999986654

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.9e-09  Score=67.05  Aligned_cols=54  Identities=24%  Similarity=0.293  Sum_probs=49.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCh
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDP   90 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp   90 (100)
                      .+..-.||||.+.++.+.||.++|+++...|||++++......||+|+++|...
T Consensus        55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            356677999999999999999999999999999999999999999999999753

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.5e-08  Score=72.17  Aligned_cols=54  Identities=22%  Similarity=0.437  Sum_probs=48.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HhCC
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYE-TLSD   89 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~-~L~d   89 (100)
                      .-..+|.||||+.+|+.++++.+|..+++++|||.+.+   .+.|.+|.+||. +|+.
T Consensus        45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999998775   568999999998 6653

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.8e-07  Score=77.87  Aligned_cols=52  Identities=31%  Similarity=0.473  Sum_probs=45.7

Q ss_pred             ccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhC
Q 040219           37 GGSLYEVLRIEPT----TMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLS   88 (100)
Q Consensus        37 ~~~~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~   88 (100)
                      .-+.|+||.|+-+    ...++||++|++++.+|||||++. -+.|..+++||+.|.
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            3568999999765    345889999999999999999996 679999999999997

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=7.9e-07  Score=59.64  Aligned_cols=63  Identities=27%  Similarity=0.517  Sum_probs=52.6

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ...+||.+||....  .++..++.-|....+++|||+.+.         .+...++++||.+|.||-+|+.|-.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            35789999987554  567777779999999999998542         5679999999999999999999964

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.54  E-value=0.00023  Score=46.47  Aligned_cols=54  Identities=22%  Similarity=0.271  Sum_probs=42.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChh
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPK   91 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~   91 (100)
                      ..-.+||||++..+.++|.+.|..|....+|+++++...-..|..|.+.|....
T Consensus        58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            466899999999999999999999999999999999888888889988886443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=6.3e-05  Score=51.23  Aligned_cols=50  Identities=30%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHh
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETL   87 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L   87 (100)
                      .+.|.+||+....+..+|+++|+++....|||+-.+           .+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            688999999999999999999999999999998543           45688888888753

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00019  Score=48.83  Aligned_cols=60  Identities=28%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           39 SLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        39 ~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      +++..+|..+.+  ..+.++..|+.+.+.+|||+...         -+.+..++.||.+|.||..|+.|-.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            456667776654  56678999999999999999774         2367889999999999999999964

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.95  E-value=0.0011  Score=51.44  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 040219           45 RIEPTTMISEIKTVYRSLVKVYHPDLSGN   73 (100)
Q Consensus        45 gv~~~a~~~eIk~ayr~l~~~~hPD~~~~   73 (100)
                      ++..-.+.++||++||+.++.+||||.+.
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq  423 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQ  423 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccC
Confidence            34445799999999999999999999764

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=94.50  E-value=0.13  Score=35.86  Aligned_cols=38  Identities=21%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219           47 EPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS   88 (100)
Q Consensus        47 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   88 (100)
                      +++|+.+||.+|+.++..+|    .++++....|..||+.+.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence            47899999999999999988    445667889999999864

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=94.41  E-value=0.11  Score=29.31  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS   88 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~   88 (100)
                      .+.|++|||+++.+.+.|-.+|+.... ..|      .....+.+|..++.
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia   48 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA   48 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence            467999999999999999999999888 222      34445566666654

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.93  E-value=0.5  Score=30.79  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=38.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETL   87 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L   87 (100)
                      ..--+||+|++..+.++|.+.|..|-....+.++++...-..+-.|-+-|
T Consensus        59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl  108 (132)
T KOG3442|consen   59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL  108 (132)
T ss_pred             HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence            45678999999999999999999999988888888744333344444333

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=89.58  E-value=0.43  Score=35.29  Aligned_cols=48  Identities=27%  Similarity=0.445  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHhCChhHHHHhh
Q 040219           50 TMISEIKTVYRSLVKVYHPDLSG--------NGRDFTKIHNAYETLSDPKARVVYD   97 (100)
Q Consensus        50 a~~~eIk~ayr~l~~~~hPD~~~--------~~~~~~~i~~Ay~~L~dp~~R~~Yd   97 (100)
                      ++..+|..+|+......||++..        ..+.+..|.+||.+|++...|...|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~   59 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD   59 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence            56788999999999999999873        2567999999999999865544433

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=89.15  E-value=2.9  Score=24.96  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG   72 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~   72 (100)
                      ++|.-+++|+++.++..||+.+-.+.++++.--..+
T Consensus         2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P   37 (88)
T COG5552           2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP   37 (88)
T ss_pred             ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence            456778999999999999999999999988544433

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=88.96  E-value=0.72  Score=29.39  Aligned_cols=41  Identities=17%  Similarity=0.378  Sum_probs=29.5

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHhCC
Q 040219           49 TTMISEIKTVYRSLVKVYHPDLSGN--------GRDFTKIHNAYETLSD   89 (100)
Q Consensus        49 ~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~i~~Ay~~L~d   89 (100)
                      ..+..+++.+.|..-+..|||..+.        ++-++.++.-.+.|..
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            4567899999999999999998765        2335555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		8e-09
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-08
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		3e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-06
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		3e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-06
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		4e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		7e-05
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
          + Y+VL ++P     E+K  YR L   YHPD + N G  F +I  AYE LSD K R +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 32 MVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-RDFTKIHNAYETLSDP 90
          MV  TG   Y+VL ++P    +E+K  YR +   +HPD + +G   F +I  AYE LSD 
Sbjct: 4  MVKETG--YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61
Query: 91 KARVVYDM 98
          K R +YD 
Sbjct: 62 KKRQIYDQ 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDL-SGNGRDFTKIHNAYETLSDPKARVVYDM 98
          LY++L + P+    E+K  YR     YHPD  +G+   F +I  A+E L+DP+ R +YD 
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS----GNGRDFTKIHNAYETLSDPKARVVY 96
          Y ++ ++PT  +  IKT YR L + YHPD+S       R F ++  A+E LSD + R  Y
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 97 DM 98
          D 
Sbjct: 67 DQ 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
          Y +L ++PT  +  IKT YR L + YHPD+S        F  +  A+E L D + R  YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YE+L +  T    EI+  Y+ L   YHPD +   ++    F +I  AYE L+D + R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 97 DM 98
          D 
Sbjct: 66 DQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
            YE+L +  T    EI+  Y+ L   YHPD +   ++    F +I  AYE L+D + R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 VYDM 98
           YD 
Sbjct: 64 AYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
            YE+L +  T    EI+  Y+ L   YHPD +   ++    F +I  AYE L+D + R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 VYDM 98
           YD 
Sbjct: 64 AYDQ 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSDP 90
          G+ G  Y++L +       EIK  Y  L K YHPD + +       F+++  AYE LSD 
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 91 KARVVYD 97
            R  YD
Sbjct: 64 VKRKQYD 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 35 GTGGS-----LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAY 84
          G+ GS      YEVL ++ +    +IK  YR L   +HPD + + ++     F  +  AY
Sbjct: 1  GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 85 ETLSDPKARVVYD 97
          E LSD K R +YD
Sbjct: 61 EVLSDSKKRSLYD 73

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPK 91
          +G SLY VL ++      +IK  YR L   YHPD + +  +    F +I+NA+  L+D  
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 92 ARVVYD 97
           R +YD
Sbjct: 75 KRNIYD 80

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 35 GTGGS-----LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAY 84
          G+ GS      YEVL +        IK  YR L   +HPD +   ++     F ++  AY
Sbjct: 1  GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAY 60
Query: 85 ETLSDPKARVVYD 97
          E LSD K R +YD
Sbjct: 61 EVLSDAKKRDIYD 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKAR 93
          G   Y+ L +       EIK  YR     YHPD +   G    F +I  AY+ LSDP+ R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 94 VVYD 97
           ++D
Sbjct: 62 EIFD 65

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPK 91
          G+ G  YE+L +       ++K  YR L   +HPD +   G    F  I  AY  LS+P+
Sbjct: 4  GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 92 ARVVYDM 98
           R  YD 
Sbjct: 64 KRKQYDQ 70

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFT-----KIHNAYETLSDPKAR 93
          S YE+L +  +    +IK  YR     +HPD + + ++F      ++  AYE LSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 94 VVYD 97
           +YD
Sbjct: 63 EIYD 66

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          Y VL +  T   ++IK  Y+ L + +HPD +   G    F +I  AYE LS+ + R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR----DFTKIHNAYETLSDPKARV 94
          + Y +L +  T    EI+  ++ L    HPD + N      DF KI+ AYE L D   R 
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 95 VYD 97
           YD
Sbjct: 82 KYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSDPKARV 94
          + Y +L +  T    EI+  ++ L    HPD + N      DF KI+ AYE L D   R 
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 95 VYD 97
           YD
Sbjct: 63 KYD 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-17
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-15
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-14
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-13
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	5e-13
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	5e-13
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	5e-13
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	6e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-13
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	8e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-12
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-12
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	1e-12
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-12
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	7e-12
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	7e-12
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	7e-12
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	8e-12
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-11
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-11
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-11
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-11
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	9e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-08
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	8e-08
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-04

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 70.7 bits (173), Expect = 6e-17
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 40 LYEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97
          L ++L +E +   +   ++  Y    K +HPD  G+     K++  Y+ + D        
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 72

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 67.5 bits (165), Expect = 2e-16
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 40 LYEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97
          L ++L +E +   +   ++  Y    K +HPD  G+     K++  Y+ + D        
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 64.9 bits (158), Expect = 6e-15
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPD-LSGNGRD---------FTKIHNAYETLSDP 90
          Y +L  +P+  IS++K  Y+ L+ +YHPD  S +            F +I  A++ L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 91 KARVVYDM 98
          + +  YD+
Sbjct: 73 ETKREYDL 80

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 62.7 bits (153), Expect = 1e-14
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRDFTKIHNAYETLSDPKARVVYD 97
          LY++L + P+    E+K  YR     YHPD   G+   F +I  A+E L+DP+ R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 61.5 bits (150), Expect = 2e-14
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-FTKIHNAYETLSDPKARVVYD 97
           Y+VL ++P    +E+K  YR +   +HPD + +G + F +I  AYE LSD K R +YD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          Y +L +  T    EI+  ++ L    HPD + N  +    F KI+ AYE L D   R  Y
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 97 D 97
          D
Sbjct: 65 D 65

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 59.0 bits (143), Expect = 5e-13
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPK 91
          +G SLY VL ++      +IK  YR L   YHPD + +  +    F +I+NA+  L+D  
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 92 ARVVYD 97
           R +YD
Sbjct: 75 KRNIYD 80

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 58.6 bits (142), Expect = 5e-13
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVV 95
          LY++L +  T   ++IK  Y     +YHPD +    +    FT+I  AY  L     R  
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 96 YD 97
          YD
Sbjct: 79 YD 80

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 58.6 bits (142), Expect = 5e-13
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 41 YEVLRIEPT-TMISEIKTVYRSLVKVYHPDLSGNGRD-------FTKIHNAYETLSDPKA 92
          Y+VL +        ++   YR+L + +HPD   N  +       F  I  AYETL D +A
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 93 RVVYD 97
          +  YD
Sbjct: 78 KTNYD 82

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 58.2 bits (141), Expect = 6e-13
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          Y VL +  T   ++IK  Y+ L + +HPD +   G    F +I  AYE LS+ + R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 60.0 bits (145), Expect = 6e-13
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 41  YEVLRIEPTTMI--SEIKTVYRSLVKVYHPDLSGNGRD---------FTKIHNAYETLSD 89
           + +  +     +    +   ++ L + YHPD   +G              I+ A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 90  PKARVVYDMSL 100
           P  R  Y +SL
Sbjct: 64  PLMRAEYLLSL 74

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 57.8 bits (140), Expect = 8e-13
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL-SGNGRD---------FTKIHNAYETLSDP 90
          Y +L  +P+  +S++K  Y+ L+ +YHPD  S +            F +I  A++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 91 KARVVYDM 98
          + +  YD+
Sbjct: 79 ETKKKYDL 86

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 57.2 bits (139), Expect = 1e-12
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDL---SGNGRDFTKIHNAYETLSDPKARVVYD 97
          Y+ L +       EIK  YR     YHPD     G    F +I  AY+ LSDP+ R ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 56.9 bits (138), Expect = 1e-12
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
          YE+L +       ++K  YR L   +HPD +   G    F  I  AY  LS+P+ R  YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 57.8 bits (140), Expect = 1e-12
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          Y +L  +  + + +I   ++      HPD           F K+  A E L++ ++R  Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 97 D 97
          D
Sbjct: 83 D 83

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.9 bits (138), Expect = 1e-12
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          Y++L +       EIK  Y  L K YHPD + +       F+++  AYE LSD   R  Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 97 D 97
          D
Sbjct: 70 D 70

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 56.1 bits (136), Expect = 4e-12
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          YE+L +  T    EI+  Y+ L   YHPD +   ++    F +I  AYE L+D + R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 97 D 97
          D
Sbjct: 66 D 66

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 55.4 bits (134), Expect = 7e-12
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRD----FTKIHNAYETLSDPKARVV 95
          YEVL ++ +    +IK  YR L   +HPD +  N  +    F  +  AYE LSD K R +
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 96 YD 97
          YD
Sbjct: 72 YD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 55.0 bits (133), Expect = 7e-12
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRD----FTKIHNAYETLSDPKARVV 95
          YEVL +        IK  YR L   +HPD +  N  +    F ++  AYE LSD K R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 96 YD 97
          YD
Sbjct: 72 YD 73

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 57.3 bits (138), Expect = 7e-12
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 53  SEIKTVYRSLVKVYHPDLSGNGRD-FTKIHNAYETLSDPKARVVYDMSL 100
           S ++  YR L   +HPD++  G +  + ++ AY TL DP  R  Y + L
Sbjct: 33  SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 55.4 bits (134), Expect = 8e-12
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAYETLSDPKARVV 95
          YE+L +  +    +IK  YR     +HPD + + ++     F ++  AYE LSD   R +
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 96 YD 97
          YD
Sbjct: 65 YD 66

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
          Y++L +  +    +IK  +  L   YHPD + +      F +I  AYETLSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRD--FTKIHNAYETLSDPKAR 93
          +++L ++P     E+   YR L  + HPD     G +  F  + NA   L      
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKS 85

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
          Y +L +  T    EI+  ++ L    HPD + N  +    F KI+ AYE L D   R  Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 97 DM 98
          D 
Sbjct: 84 DK 85

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS-GNGRD--FTKIHNAYETLSDPKARVVYD 97
          Y +L ++PT  +  IKT YR L + YHPD+S  N  +  F  +  A+E L D + R  YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 51.5 bits (123), Expect = 2e-10
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 40 LYEVLRIEPTTM--ISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97
          L E+L++          ++  Y+    + HPD  G+     ++++ + T       +  +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72

Query: 98 MS 99
          + 
Sbjct: 73 LG 74

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 49.3 bits (118), Expect = 9e-10
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 41 YEVLRIEPTTM-ISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93
           ++L +   T+   ++K V+R ++   HPD  G+    TKI+ A + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 52.0 bits (124), Expect = 1e-09
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 41  YEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRD---------FTKIHNAYETLSD 89
           + ++    +  +   +++  Y+ L ++ HPD                 T +++AY+TL  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 90  PKARVVYDMS 99
           P +R +Y + 
Sbjct: 106 PLSRGLYLLK 115

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 41  YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-------RDFTKIHNAYETLSDPKAR 93
           Y++L ++      EI   YR L   +HPD   N        + F  I  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 94  VVYDM 98
             +D 
Sbjct: 445 KKFDD 449

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 37  GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPD-LSGNGRD------FTKIHNAYETLSD 89
           G + ++ + +       ++K VYR  V V HPD  +G   +      F ++++A+    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 90  PKARVVY 96
              + +Y
Sbjct: 176 QGQKPLY 182

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 45.1 bits (107), Expect = 8e-08
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAYETLSDPKARVV 95
            V+        SE K + R L   +HPD +    D     F  + N    L     +  
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAF 75

Query: 96 YD 97
           D
Sbjct: 76 LD 77

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPD-LSGNGRD------FTKIHNAYETLSD 89
          G + ++ + +       ++K VYR  V V HP   +G   +      F ++++A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.89
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.88
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.88
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.88
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.88
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.88
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.87
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.87
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.87
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.86
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.86
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.85
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.85
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.82
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.81
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.81
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.8
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.8
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.8
2guz_A	71	Mitochondrial import inner membrane translocase su	99.78
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.77
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.76
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.76
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.72
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.7
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.67
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.66
2guz_B	65	Mitochondrial import inner membrane translocase su	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.66

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=130.07  Aligned_cols=67  Identities=31%  Similarity=0.522  Sum_probs=61.8

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      .....|||+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||+.|
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            3456899999999999999999999999999999999874    678999999999999999999999865

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=3.7e-23  Score=123.39  Aligned_cols=65  Identities=37%  Similarity=0.650  Sum_probs=60.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||..
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   72 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY   72 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            346899999999999999999999999999999999875    57899999999999999999999975

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=4.3e-23  Score=121.59  Aligned_cols=64  Identities=36%  Similarity=0.667  Sum_probs=60.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   70 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG   70 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            35799999999999999999999999999999999886 68999999999999999999999974

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=4.6e-23  Score=122.80  Aligned_cols=65  Identities=34%  Similarity=0.606  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   71 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQF   71 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            346899999999999999999999999999999999865   56899999999999999999999975

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.88  E-value=1.9e-23  Score=128.24  Aligned_cols=66  Identities=26%  Similarity=0.555  Sum_probs=60.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----------GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      ....|||+||||+++++.++||++|+++++++|||+++.          .+.|++|++||++|+||.+|..||..|
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            356899999999999999999999999999999999763          468999999999999999999999864

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.88  E-value=8.4e-23  Score=121.40  Aligned_cols=63  Identities=35%  Similarity=0.611  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   67 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3689999999999999999999999999999999864   57899999999999999999999975

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=7.4e-23  Score=124.60  Aligned_cols=65  Identities=37%  Similarity=0.637  Sum_probs=60.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~   71 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTL   71 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHT
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            346899999999999999999999999999999999986   56899999999999999999999975

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=122.27  Aligned_cols=64  Identities=38%  Similarity=0.564  Sum_probs=59.8

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|||+||||+++++.++||++|+++++++|||++++     .+.|+.|++||++|+||.+|..||..
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   75 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRY   75 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHT
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            45899999999999999999999999999999999876     35899999999999999999999975

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=1.4e-22  Score=123.39  Aligned_cols=65  Identities=32%  Similarity=0.528  Sum_probs=60.4

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||..
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   81 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHY   81 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence            356899999999999999999999999999999999874   57899999999999999999999974

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-22  Score=124.28  Aligned_cols=64  Identities=34%  Similarity=0.639  Sum_probs=59.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|||+||||+++++.++||++|+++++++|||+++ +.+.|++|++||++|+||.+|..||..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   70 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY   70 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3579999999999999999999999999999999985 477999999999999999999999974

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.6e-22  Score=128.12  Aligned_cols=65  Identities=22%  Similarity=0.344  Sum_probs=60.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||++++    .+.|++|++||++|+||.+|..||+.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   85 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW   85 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            346899999999999999999999999999999999885    67999999999999999999999974

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=6.2e-22  Score=124.89  Aligned_cols=65  Identities=37%  Similarity=0.621  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....++|+||||+++++.++||++|+++++++|||++++    .+.|+.|++||++|+||.+|..||..
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   82 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKY   82 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            345899999999999999999999999999999999985    56899999999999999999999974

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.7e-22  Score=122.88  Aligned_cols=64  Identities=36%  Similarity=0.620  Sum_probs=59.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||+.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~   75 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA   75 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            45799999999999999999999999999999999875     46899999999999999999999974

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=5.1e-22  Score=123.48  Aligned_cols=62  Identities=34%  Similarity=0.617  Sum_probs=58.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++++.++||++|+++++++|||++++     .+.|+.|++||++|+||.+|..||..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~   68 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY   68 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            589999999999999999999999999999999875     46899999999999999999999964

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=5.7e-22  Score=131.58  Aligned_cols=65  Identities=28%  Similarity=0.596  Sum_probs=60.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----------RDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----------~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||++|+++++++|||++++.          +.|..|++||++|+||.+|+.||..
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~   81 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ   81 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3468999999999999999999999999999999998752          6899999999999999999999964

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.85  E-value=2.7e-22  Score=126.31  Aligned_cols=65  Identities=32%  Similarity=0.475  Sum_probs=60.5

Q ss_pred             CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTT-MISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||++++ +.++||++|+++++++|||++++       .+.|++|++||++|+||.+|..||..
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~   84 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY   84 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            3468999999999999 99999999999999999999876       56899999999999999999999974

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.85  E-value=3.7e-22  Score=124.68  Aligned_cols=63  Identities=35%  Similarity=0.613  Sum_probs=59.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++++.++||++|+++++++|||++++    .+.|++|++||++|+||.+|..||..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   68 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3799999999999999999999999999999999874    56899999999999999999999975

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.82  E-value=3.3e-21  Score=115.39  Aligned_cols=62  Identities=15%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhh
Q 040219           36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD   97 (100)
Q Consensus        36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd   97 (100)
                      ...++|+||||+++  ++.++||++||++++++|||++++.+.|++|++||++|+|+.+|..++
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            34689999999999  999999999999999999999999999999999999999999998764

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=5.9e-21  Score=116.71  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHH
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVV   95 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~   95 (100)
                      ..|||+||||+++++.++||++|+++++++|||++++   .+.|++|++||++|+||.+|..
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            4899999999999999999999999999999999853   6799999999999999998753

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.81  E-value=6.5e-22  Score=125.90  Aligned_cols=62  Identities=19%  Similarity=0.324  Sum_probs=59.2

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           37 GGSLYEVLRIEPTTMI--SEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ..++|+||||+++++.  ++||++||++++++|||++++.+.|++|++||++|+||.+|..||.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            4689999999999998  9999999999999999999999999999999999999999999984

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.81  E-value=1.4e-20  Score=126.98  Aligned_cols=63  Identities=22%  Similarity=0.388  Sum_probs=57.8

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           38 GSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        38 ~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      .|||+||||++++  +..+||++|+++++++|||++++         .+.|..|++||++|+||.+|..||..|
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            3799999999999  99999999999999999999875         247999999999999999999999754

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.80  E-value=6e-20  Score=127.22  Aligned_cols=67  Identities=21%  Similarity=0.446  Sum_probs=59.0

Q ss_pred             CCCCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           33 VPGTGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        33 ~~~~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ++....|||+||||+++  ++..+||++||++++++|||++++         .+.|..|++||++|+||.+|+.||..
T Consensus        38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            33446899999999986  789999999999999999999874         24689999999999999999999854

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.80  E-value=1.4e-21  Score=132.28  Aligned_cols=64  Identities=20%  Similarity=0.343  Sum_probs=57.5

Q ss_pred             CccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTM--ISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|+|+||||+++++  .++||+|||++++++|||++++++.|++|++||++|+||.+|+.||+.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~   74 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   74 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            3579999999999998  699999999999999999999999999999999999999999999973

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.80  E-value=4.1e-20  Score=126.17  Aligned_cols=62  Identities=35%  Similarity=0.558  Sum_probs=58.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .|||+||||+++++.++||++||++++++|||++++    .+.|+.|++||++|+||.+|..||..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~   67 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY   67 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            589999999999999999999999999999999863    56899999999999999999999963

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.2e-20  Score=107.75  Aligned_cols=57  Identities=25%  Similarity=0.292  Sum_probs=53.1

Q ss_pred             ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219           37 GGSLYEVLRIEP-TTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR   93 (100)
Q Consensus        37 ~~~~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R   93 (100)
                      ..++|+||||++ +++.++||++||++++++|||++++.+.|++|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            478999999998 799999999999999999999999999999999999999987654

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.77  E-value=1.5e-19  Score=123.01  Aligned_cols=65  Identities=29%  Similarity=0.514  Sum_probs=58.9

Q ss_pred             CccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           36 TGGSLYEVL------RIEP-TTMISEIKTVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        36 ~~~~~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      ...|||+||      |+++ +++..+||++||++++++|||+++ +.+.|..|++||++|+||.+|..||..|
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            458999999      4665 899999999999999999999988 5779999999999999999999999753

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.76  E-value=4.4e-20  Score=135.35  Aligned_cols=63  Identities=37%  Similarity=0.645  Sum_probs=0.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++|+.+|||+|||+++++||||++++   .+.|++|++||++|+||.+|..||+.
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            4799999999999999999999999999999999864   56899999999999999999999974

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.76  E-value=1.8e-19  Score=109.91  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHH
Q 040219           34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARV   94 (100)
Q Consensus        34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~   94 (100)
                      +....++|+||||+++++.++||++|++++++||||++++     .+.|++|++||++|+|...|.
T Consensus        12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3456899999999999999999999999999999999986     468999999999999977663

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.72  E-value=6.4e-19  Score=119.89  Aligned_cols=59  Identities=20%  Similarity=0.401  Sum_probs=55.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHh
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVY   96 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Y   96 (100)
                      .++|+||||+++++.++||++||++++++|||++++       .+.|+.|++||++|+|+.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999764       35899999999999999999877

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.70  E-value=3.7e-18  Score=107.26  Aligned_cols=55  Identities=15%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHhCChh
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETLSDPK   91 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~dp~   91 (100)
                      ...+||+|||++. ++.++||+|||++++++|||++++           .+.|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3479999999996 999999999999999999999652           468999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.67  E-value=1.6e-17  Score=102.03  Aligned_cols=52  Identities=19%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCC
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSD   89 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d   89 (100)
                      .++|++|||+++++.++||+|||++++++|||++++       ++.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            588999999999999999999999999999999764       3479999999999964

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.66  E-value=9.9e-18  Score=132.26  Aligned_cols=65  Identities=34%  Similarity=0.526  Sum_probs=40.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ....|||+||||+++++.++||+|||++++++|||++++    .+.|++|++||++|+||.+|..||+.
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~   86 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY   86 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhh
Confidence            346899999999999999999999999999999999863    56899999999999999999999974

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=6.9e-13  Score=76.46  Aligned_cols=52  Identities=21%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCC
Q 040219           38 GSLYEVLRIEPT---TMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSD   89 (100)
Q Consensus        38 ~~~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d   89 (100)
                      ...|+||||+++   ++.++|+++||+++..+|||++++......|++|++.|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            356899999999   9999999999999999999999999999999999999864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.26  E-value=3.8e-12  Score=91.89  Aligned_cols=61  Identities=34%  Similarity=0.532  Sum_probs=52.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCChhHHHHhhc
Q 040219           38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-------RDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-------~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      .++|++||+...++.++|+++|+++++++|||+.+..       +.|..|.+||++|+||.+|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            5899999999999999999999999999999998764       379999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.66  E-value=0.051  Score=42.23  Aligned_cols=47  Identities=19%  Similarity=0.179  Sum_probs=36.3

Q ss_pred             CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 040219           36 TGGSLYEVLRIEPTTMI--SEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYET   86 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~   86 (100)
                      ...++|.+||++-+...  .+|+++||++++..+++    .+++..+..|+.|
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            34569999999766544  67999999999966554    4678888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-14
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-11
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	7e-11
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-10
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	5e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	7e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-07
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-06

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 59.6 bits (144), Expect = 4e-14
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 39 SLYEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96
           L E+L++          ++  Y+    + HPD  G+     ++++ + T       +  
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71

Query: 97 DM 98
          ++
Sbjct: 72 NL 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (129), Expect = 1e-11
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----------FTKIHNAYETLSDP 90
          Y +L  +P+  +S++K  Y+ L+ +YHPD                 F +I  A++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 91 KARVVYDM 98
          + +  YD+
Sbjct: 79 ETKKKYDL 86

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (123), Expect = 7e-11
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 41  YEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRD---------FTKIHNAYETLSD 89
           + +  +     +    +   ++ L + YHPD   +G              I+ A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 90  PKARVVYDMSL 100
           P  R  Y +SL
Sbjct: 64  PLMRAEYLLSL 74

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.1 bits (122), Expect = 1e-10
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSD 89
          G + ++ + +       ++K VYR  V V HPD +            F ++++A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 90 PKARVVY 96
             + +Y
Sbjct: 92 QGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (117), Expect = 5e-10
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVV 95
           YE+L +  T    EI+  Y+ L   YHPD +   ++    F +I  AYE L+D + R  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 96 YDM 98
          YD 
Sbjct: 65 YDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 49.8 bits (118), Expect = 7e-10
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 40 LYEVLRIEPTTMIS--EIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97
          L ++L +E +   +   ++  Y    K +HPD  G+     K++  Y+ + D        
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-07
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDF---TKIHNAYETLSDPKARVVYD 97
          Y+ L +       EIK  YR     YHPD +          +I  AY+ LSDP+ R ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 98 M 98
           
Sbjct: 66 R 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAYETLSDPKAR 93
          +  V+        SE K + R L   +HPD +    D     F  + N    L      
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.87
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.85
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.83
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.7
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	88.44

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.3e-25  Score=128.85  Aligned_cols=63  Identities=35%  Similarity=0.613  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      .+|||+||||++++|.++||+||+++++.+|||++++    .+.|..|++||+||+||.+|..||+.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~   68 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY   68 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            4799999999999999999999999999999999875    45799999999999999999999974

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8.8e-24  Score=129.00  Aligned_cols=64  Identities=27%  Similarity=0.589  Sum_probs=58.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----------GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ...|||+||||+++++.++||++|+++++++|||++..          .+.|..|++||++|+||.+|..||..
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~   87 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            45799999999999999999999999999999999764          35699999999999999999999964

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=122.94  Aligned_cols=63  Identities=35%  Similarity=0.611  Sum_probs=58.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..|||+||||+++++.++|+++|+++++++|||++..   .+.|..|++||+||+||.+|..||+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~   67 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY   67 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence            3699999999999999999999999999999999775   46899999999999999999999974

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.87  E-value=1.9e-24  Score=135.99  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219           37 GGSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMS   99 (100)
Q Consensus        37 ~~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~~   99 (100)
                      ..++|+||||+.+|  +.++||+||+++++++|||++++.+.|++|++||+||+||.+|..||..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            47899999999998  7889999999999999999999999999999999999999999999964

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.85  E-value=1.2e-22  Score=120.34  Aligned_cols=63  Identities=14%  Similarity=0.307  Sum_probs=60.0

Q ss_pred             CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219           36 TGGSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM   98 (100)
Q Consensus        36 ~~~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~   98 (100)
                      ...++|+||||++++  +.++||+||+++++++|||++++++.|++|++||++|+|+.+|..||.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHcc
Confidence            457899999999987  999999999999999999999999999999999999999999999985

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.2e-21  Score=115.07  Aligned_cols=63  Identities=22%  Similarity=0.388  Sum_probs=55.7

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219           38 GSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMSL  100 (100)
Q Consensus        38 ~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l  100 (100)
                      .|||+||||++++  +.++|+++|+++++.+|||+..+         .+.|..|++||++|+||.+|..|+..|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            3899999999864  58999999999999999999654         346889999999999999999998765

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2.3e-19  Score=109.87  Aligned_cols=60  Identities=22%  Similarity=0.431  Sum_probs=54.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHh
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVY   96 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Y   96 (100)
                      ..+.|++|||...++.++||++|+++++.+|||++++       .+.|..|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4578999999999999999999999999999998664       35799999999999999999887

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.2e-19  Score=105.77  Aligned_cols=55  Identities=22%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChh
Q 040219           37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPK   91 (100)
Q Consensus        37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~   91 (100)
                      ..++|+||||.++++.+|||+||++++++||||++++     .+.|+.|++||++|+++.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~   74 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999875     457999999999997543

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.44  E-value=0.43  Score=24.71  Aligned_cols=46  Identities=15%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHHHh-CCh-hHHHHhhcc
Q 040219           54 EIKTVYRSLVKVYHPDLSGN-GRDFTKI---HNAYETL-SDP-KARVVYDMS   99 (100)
Q Consensus        54 eIk~ayr~l~~~~hPD~~~~-~~~~~~i---~~Ay~~L-~dp-~~R~~Yd~~   99 (100)
                      |.+++|+++.+..+=+..-+ +..+..|   ..-|..| +|| .++..||.+
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y   52 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY   52 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHH
Confidence            46889999999876555555 4455544   3689999 687 688888865