Citrus Sinensis ID: 040228


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-
MAVDPIPKKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKDEHRTSGTTSDDNTIDESTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRSKLIVGK
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccccccccccEEEEEcccccccccccccHHccHHHHHHHccHHHHHHHHHHcEEEEEEcccEEEccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEHHHHHHHHccccccEEEEEHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEEccccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHccccccEEEccccccEEEEEcc
mavdpipkkwkdvwddwNIRGIILLSLSLQTFLILfapsrkgsgnKLLVMLIWSAYLLADWAANYAVGlisdsqgdnpgpsdpkhnnqllaFWPTFLLlhlggpdtiTALALEDNELWLRHSLGLITQAASAVYVFLLSlpnnkvlvpSILMFIAGVIKYFERSRALYLGSVDRFresmlsdadpgpnYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSfrerddsrnffrtlhaEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVkkdeyegfdvgiTYTLFWGAIALDVVAFFMFIFSDWTLAALtrdrdsnsgFRIIKMVKSFFAKILQLFLYfkspwwqdyhweenvtdksnvklkhqllatptlfrrwsgyvsghNLIRFClrrrpekrhrVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKcirkfnevSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIiyvshepftKELWQFIFKEIEtkaqyaddpeaaesissakgewimqdwdpdgmrIKELLSYVTDVAYDESILLWHIATELLyfedkkdehrtsgttsddntidESTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQtyvkpsavkgdrsksvlfDGSILAKELKKLEKRDRWELMSKVWLELLSYAAthcdprahaqlvssgGELITFVWLLMAHfglgeqfkinkgqgrsklivgk
mavdpipkkwkdvwdDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRnffrtlhaedslKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATptlfrrwsgyvsGHNLIRFclrrrpekrhRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKkdehrtsgttsddntideSTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFkrkvlsdekeacekilnvqtyvkpsavkgdrsksvlfdgsilakelkklekrdrWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGeqfkinkgqgrsklivgk
MAVDPIPKKWKDVWDDWNIRGiillslslqtflilfAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPeaekklkvelkkralTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKDEHRTSGTTSDDNTIDESTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRSKLIVGK
*******KKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLI*****************QLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFR*******************Y*SKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQY**************GEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFE*****************************YNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKIN************
******P*KWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLI*****************QLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYL*****************PNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIET**************SSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKD*************************YNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQ***********L****
MAVDPIPKKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQ************SAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKK*****************STKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRSKLIVGK
**VDPIPKKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDS***********HNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKL*VELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDK**************************EYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKP***KGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRSKLIVGK
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVDPIPKKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEKTIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKDEHRTSGTTSDDNTIDESTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDRWELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRSKLIVGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query831
255575740769 conserved hypothetical protein [Ricinus 0.903 0.976 0.517 0.0
15242414877 uncharacterized protein [Arabidopsis tha 0.955 0.905 0.462 0.0
297791185870 hypothetical protein ARALYDRAFT_494436 [ 0.959 0.916 0.462 0.0
15242429803 uncharacterized protein [Arabidopsis tha 0.942 0.975 0.472 0.0
297791187838 hypothetical protein ARALYDRAFT_494437 [ 0.957 0.949 0.451 0.0
297791169796 hypothetical protein ARALYDRAFT_494429 [ 0.937 0.978 0.461 0.0
15242412866 uncharacterized protein [Arabidopsis tha 0.951 0.913 0.428 0.0
297791173798 hypothetical protein ARALYDRAFT_494430 [ 0.941 0.979 0.456 0.0
449469424757 PREDICTED: uncharacterized protein LOC10 0.861 0.945 0.464 0.0
15242428798 uncharacterized protein [Arabidopsis tha 0.926 0.964 0.448 0.0
>gi|255575740|ref|XP_002528769.1| conserved hypothetical protein [Ricinus communis] gi|223531772|gb|EEF33591.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/846 (51%), Positives = 557/846 (65%), Gaps = 95/846 (11%)

Query: 3   VDPIPKKWKDVWDDWNIRGIILLSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWA 62
           V+PIP   K +W+ WNIRG ++ SL LQT L+LFAPSRK +  KL+++LIWS YLLAD  
Sbjct: 2   VNPIPDSVKKIWEHWNIRGALMFSLLLQTLLVLFAPSRKRTSRKLIILLIWSGYLLADAT 61

Query: 63  ANYAVGLISDSQGD-------NPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDN 115
           A +AVGLIS+SQ +           +  + N+ LLAFW  FLL+HLGGPDTITA ALEDN
Sbjct: 62  ATFAVGLISNSQSNFGSDRKAQKTKNSDRENSDLLAFWAPFLLVHLGGPDTITAFALEDN 121

Query: 116 ELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRF 175
           ELWLRH L L+ QA +  YVF+ +LP NKV++P+ L+F+AG+IKY ER+R+LYL S+DRF
Sbjct: 122 ELWLRHLLALVFQAVATGYVFIQTLPENKVMIPTFLLFLAGIIKYSERTRSLYLASMDRF 181

Query: 176 RESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRAL---TNLDV 232
           R+SML + DPGPNYAKLMEEY SK +A+LP +II IPE EK     + +  +     L+V
Sbjct: 182 RDSMLKEPDPGPNYAKLMEEYASKKQAKLPTQIIMIPEPEKVNTTGIAREKIILKNQLEV 241

Query: 233 VHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVN 292
           V  A+ +F +F+GL+VD+I+SF+ER+DSR FF  + AED+L++IE ELNF+YEV +TKV 
Sbjct: 242 VQKAYEFFQVFRGLIVDLIFSFKERNDSREFFYNISAEDALRVIEAELNFMYEVLFTKVV 301

Query: 293 VTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMF 352
           V  S WG  FRL + GSV AALC F+F VKK+ ++GFDVG+TY L +GAI LD+VAF M 
Sbjct: 302 VVQSKWGYFFRLISFGSVVAALCVFHFYVKKESFDGFDVGVTYALLFGAIGLDIVAFLMA 361

Query: 353 IFSDWTLAALTRDRDSNSG---FRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDK 409
           IFSDW  AAL +  D+ S      I + V +    I   FL  K   W+ Y  E +V   
Sbjct: 362 IFSDWR-AALHKSSDNISESCWSYIAEFVSNQAMMIFSKFLTIKKSKWRKYEIEPDVN-- 418

Query: 410 SNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGI 469
                    L TP  FRRWSG +SGHNL+R+CL+ RP K   +K            C  +
Sbjct: 419 ------FMFLDTPIFFRRWSGCISGHNLVRYCLKGRPSKICSIKK---------RTCCAV 463

Query: 470 GPFLEKMASSIKIFVRSGIEKTIQC--LAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLW 527
                 +   I   + +G EK IQ   +  P K L   K             D VI    
Sbjct: 464 ------ITKKIHQSISNGTEKVIQFTHMETPIKQLGILK-------------DTVI---- 500

Query: 528 IKFILAVGCWILDFVGIKELLDGIIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESI 587
                       +F+G+K+ +D I YVS EPFTKELW+FIF E+  K+ +ADDPE A+ I
Sbjct: 501 ------------EFIGLKDFVDEITYVSKEPFTKELWEFIFDELRGKSSFADDPETAKRI 548

Query: 588 SSAKGEWIMQDWDPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKDEHRTSGTT 647
            +A+G+W++Q+ D D  + +EL+ YV+DV YD+SILLWH+ATELLY            T 
Sbjct: 549 YAARGDWVLQNNDSD--KYQELMPYVSDVGYDQSILLWHVATELLY-----------NTD 595

Query: 648 SDDNTIDESTKEALQKEYNDLEFSKLLSDYMMYLLIMQPTMMSAVAGIGKIRFRDTLAEA 707
           +DD+           K Y+  EFSK ++DYM+YLLIMQP +M AVAGIGKIRFRDT AE 
Sbjct: 596 ADDS-----------KSYSYREFSKTIADYMLYLLIMQPGIMQAVAGIGKIRFRDTCAET 644

Query: 708 KRFFKRKVLS--DEKEACEKILNVQTYVKPSAVKGDRSKSVLFDGSILAKELKKLEKRDR 765
            RFF RK L   +EK AC+ IL V T VKP AVKGDRSKSVLFDGS+LA+EL+KL K  +
Sbjct: 645 VRFFVRKGLRSHEEKRACQCILEVDTEVKPIAVKGDRSKSVLFDGSMLAQELQKL-KEKK 703

Query: 766 WELMSKVWLELLSYAATHCDPRAHAQLVSSGGELITFVWLLMAHFGLGEQFKINKGQGRS 825
           WE MSKVW+ELLSYAA+HC   AHAQ VS GGELIT VWLLMAH GLG+QF+IN+G  R+
Sbjct: 704 WETMSKVWVELLSYAASHCRANAHAQQVSKGGELITLVWLLMAHLGLGQQFQINEGHARA 763

Query: 826 KLIVGK 831
           KLIVGK
Sbjct: 764 KLIVGK 769




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242414|ref|NP_199361.1| uncharacterized protein [Arabidopsis thaliana] gi|9758738|dbj|BAB09176.1| unnamed protein product [Arabidopsis thaliana] gi|332007874|gb|AED95257.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791185|ref|XP_002863477.1| hypothetical protein ARALYDRAFT_494436 [Arabidopsis lyrata subsp. lyrata] gi|297309312|gb|EFH39736.1| hypothetical protein ARALYDRAFT_494436 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242429|ref|NP_199367.1| uncharacterized protein [Arabidopsis thaliana] gi|9758744|dbj|BAB09182.1| unnamed protein product [Arabidopsis thaliana] gi|332007883|gb|AED95266.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791187|ref|XP_002863478.1| hypothetical protein ARALYDRAFT_494437 [Arabidopsis lyrata subsp. lyrata] gi|297309313|gb|EFH39737.1| hypothetical protein ARALYDRAFT_494437 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297791169|ref|XP_002863469.1| hypothetical protein ARALYDRAFT_494429 [Arabidopsis lyrata subsp. lyrata] gi|297309304|gb|EFH39728.1| hypothetical protein ARALYDRAFT_494429 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242412|ref|NP_199360.1| uncharacterized protein [Arabidopsis thaliana] gi|9758737|dbj|BAB09175.1| unnamed protein product [Arabidopsis thaliana] gi|110742213|dbj|BAE99033.1| hypothetical protein [Arabidopsis thaliana] gi|332007873|gb|AED95256.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791173|ref|XP_002863471.1| hypothetical protein ARALYDRAFT_494430 [Arabidopsis lyrata subsp. lyrata] gi|297309306|gb|EFH39730.1| hypothetical protein ARALYDRAFT_494430 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449469424|ref|XP_004152420.1| PREDICTED: uncharacterized protein LOC101209159 [Cucumis sativus] gi|449488744|ref|XP_004158159.1| PREDICTED: uncharacterized protein LOC101224461 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15242428|ref|NP_199366.1| uncharacterized protein [Arabidopsis thaliana] gi|9758743|dbj|BAB09181.1| unnamed protein product [Arabidopsis thaliana] gi|332007882|gb|AED95265.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query831
TAIR|locus:2163518803 AT5G45540 "AT5G45540" [Arabido 0.557 0.576 0.451 6.3e-192
TAIR|locus:2163558877 AT5G45480 "AT5G45480" [Arabido 0.436 0.413 0.529 5.6e-191
TAIR|locus:2163543866 AT5G45470 "AT5G45470" [Arabido 0.438 0.420 0.469 1.3e-176
TAIR|locus:2163598798 AT5G45530 "AT5G45530" [Arabido 0.611 0.636 0.406 6.1e-170
TAIR|locus:2117204751 AT4G19090 "AT4G19090" [Arabido 0.270 0.299 0.480 6.8e-102
TAIR|locus:2163523703 AT5G45460 "AT5G45460" [Arabido 0.438 0.517 0.480 2e-88
TAIR|locus:2117194327 AT4G19080 "AT4G19080" [Arabido 0.344 0.874 0.424 2.2e-57
TAIR|locus:2163518 AT5G45540 "AT5G45540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1046 (373.3 bits), Expect = 6.3e-192, Sum P(2) = 6.3e-192
 Identities = 218/483 (45%), Positives = 293/483 (60%)

Query:     4 DPIPKKWKDVWDDWNIRGXXXXXXXXXXXXXXXAPSRKGSGNKLLVMLIWSAYLLADWAA 63
             D IP   + +WD WNIRG               APSR+ +  KL ++LIWSAYLLADWAA
Sbjct:     3 DMIPPHLRKLWDKWNIRGVIILSLFLQTILIFFAPSRRRTAKKLFLVLIWSAYLLADWAA 62

Query:    64 NYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSL 123
             +YAVG ISDSQ +    + P  N +LLAFW  FLLLHLGGPDTITALALEDNELW RH  
Sbjct:    63 DYAVGQISDSQEEEAESNKPSKNRELLAFWSPFLLLHLGGPDTITALALEDNELWDRHLF 122

Query:   124 GLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDA 183
              L+ QA + VYV LLS+PN ++L P+++MF+ GVIKY ER+ AL+  S+D+F++SML D 
Sbjct:   123 SLVCQAVATVYVILLSIPN-RLLTPTLIMFVGGVIKYVERTAALFSASLDKFKDSMLDDP 181

Query:   184 DPGPNYAKLMEEYESKIKAQLPARIITI--PXXXXXXXXXXX-XXXXTNLDVVHYAHHYF 240
             DPG NYAKLMEEYE++ K  +P  +I +  P                T L V+ YA+ YF
Sbjct:   182 DPGANYAKLMEEYEARKKMNMPTDVIVVKDPEKGREGNTPVRPDNELTALQVIQYAYKYF 241

Query:   241 SIFKGLLVDIIYSFRERDDSRNFFRTLHAEDSLKIIEVELNFIYEVFYTKVNVTHSWWGV 300
             +IFKGL+VD+I++ +ERD+SR FF  L AE++L+IIEVEL  IY+  +TK  + H+W G 
Sbjct:   242 NIFKGLIVDLIFTNQERDESRKFFDKLTAEEALRIIEVELGLIYDCLFTKAEILHNWTGA 301

Query:   301 IFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTLA 360
             +FR  A G + A+LC F    KKD+Y+GFDV +TY L    IALD +A  MF  SDWT+A
Sbjct:   302 VFRFIALGCLVASLCLFKMN-KKDQYDGFDVVLTYALLICGIALDSIALLMFCVSDWTIA 360

Query:   361 ALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLA 420
              L + ++       ++   +   ++L   L FK+       W+ +   +      HQ+L 
Sbjct:   361 RLRKLKED------LEEKDTLTDRVLNWILDFKT-----LRWKRSKCSQDG----HQVLN 405

Query:   421 TPTLFRRWSGYVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSI 480
                +FRRWS YV  +NLI FCL  RP++ H  K        + +  L I   +E      
Sbjct:   406 RNFMFRRWSEYVHAYNLIGFCLGIRPKRIHYTKGKIHSFFHQTVHILSIDTAIENATRGT 465

Query:   481 KIF 483
             + F
Sbjct:   466 RQF 468


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2163558 AT5G45480 "AT5G45480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163543 AT5G45470 "AT5G45470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163598 AT5G45530 "AT5G45530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117204 AT4G19090 "AT4G19090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163523 AT5G45460 "AT5G45460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117194 AT4G19080 "AT4G19080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT5G45480
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF594 (InterPro-IPR007658); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G45540.1); Has 790 Blast hits to 501 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (877 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G45460
unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular [...] (703 aa)
      0.446
AT5G45510
leucine-rich repeat family protein; leucine-rich repeat family protein; FUNCTIONS IN- protein b [...] (1222 aa)
       0.422

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query831
pfam13968362 pfam13968, DUF4220, Domain of unknown function (DU 1e-105
pfam0457859 pfam04578, DUF594, Protein of unknown function, DU 1e-20
>gnl|CDD|222480 pfam13968, DUF4220, Domain of unknown function (DUF4220) Back     alignment and domain information
 Score =  329 bits (845), Expect = e-105
 Identities = 156/406 (38%), Positives = 210/406 (51%), Gaps = 55/406 (13%)

Query: 52  IWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALA 111
           +W AYLLAD  A YA+GL+S S GD          +QL+AFW  FLLLHLGGPDTITA +
Sbjct: 1   LWLAYLLADSIATYALGLLSLSSGDP-------ARHQLVAFWAPFLLLHLGGPDTITAYS 53

Query: 112 LEDNELWLRHSLGLITQAASAVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGS 171
           LEDNELWLRH LGL+ Q   A+YV   S P   +LVP++LMF+ GVIKY ER  AL   S
Sbjct: 54  LEDNELWLRHLLGLLVQVFLALYVLYKSWPGQPLLVPAVLMFVVGVIKYGERIWALRSAS 113

Query: 172 VDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALT--- 228
           ++  R SML + DPGPNYAK ME Y+  +   L A+I+   E +  L    +        
Sbjct: 114 MESIRSSMLGEPDPGPNYAKFMEGYKYLVAEGLQAKIVIGREEDVDLNSVEQVWEQLLLI 173

Query: 229 ------NLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLHA-EDSLKIIEVELN 281
                     +  AH  F + + L VD+I S ++R  S+ FFR L   E + K++E+EL+
Sbjct: 174 ILKDGDEEKDLCLAHALFKLLRRLFVDLILSEQDRRKSQEFFRRLSDHERAFKVVEIELS 233

Query: 282 FIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKD-EYEGFDVGITYTLFWG 340
           F+Y++ YTK  V H+W G + R  +  S  AAL  F+  VK   +Y   DV ITY L  G
Sbjct: 234 FMYDILYTKAPVIHTWGGYVLRFISLLSTVAALLLFWLAVKDRHDYSRVDVVITYVLLVG 293

Query: 341 AIALDVVAFFMFIFSDWTLAALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDY 400
           A+ L++ +    +FSDWT  AL+    S            + + +L+L            
Sbjct: 294 ALILEIYSLLRLVFSDWTKVALSCRYRSWLRHH------GWLSSLLRLLRRLSR------ 341

Query: 401 HWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIRFCLRRRP 446
                                    RRWS  +  +NLI  CL+ R 
Sbjct: 342 -------------------------RRWSNSMGQYNLIDSCLKERR 362


This family is found in plants and is often associated with DUF294, pfam04578. Length = 362

>gnl|CDD|218157 pfam04578, DUF594, Protein of unknown function, DUF594 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 831
PF13968362 DUF4220: Domain of unknown function (DUF4220) 100.0
PF0457859 DUF594: Protein of unknown function, DUF594; Inter 99.91
>PF13968 DUF4220: Domain of unknown function (DUF4220) Back     alignment and domain information
Probab=100.00  E-value=7.1e-80  Score=688.71  Aligned_cols=349  Identities=40%  Similarity=0.670  Sum_probs=296.0

Q ss_pred             HHHHHhhhhhHHHHHhhHhhccCCCCCCCCCCCCcccccchhhHHHHHhhcCCCcccccccchhhhhhHHHHhhhhheee
Q 040228           52 IWSAYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAAS  131 (831)
Q Consensus        52 lWlAYl~ad~vA~YaLG~Ls~~~~~~~~~~~~~~~~~L~~fWAPfLLlHLGG~DtITAySlEDN~LW~Rhll~L~~Qv~~  131 (831)
                      +|+||++||++|+||||+|++++.        +.+++|++|||||||+||||||||||||+|||+||+||++++++|+++
T Consensus         1 lWlay~~sd~~a~Y~LG~l~~~~~--------~~~~~l~~~WAp~LLlhlgg~d~itaysleDn~lw~R~ll~ll~qv~~   72 (362)
T PF13968_consen    1 LWLAYLLSDSLATYALGLLQSSSS--------PFKSQLFPFWAPFLLLHLGGQDTITAYSLEDNELWLRHLLTLLVQVIW   72 (362)
T ss_pred             CchHHhhhHHHHHHHHHHHhcCCC--------CCCcchhhhHHHHHHHHhCCCcceeeeecccchHHHHHHHHHHHHhhh
Confidence            699999999999999999999862        577999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEccCCCchHHHHHHHHHHHHHhhhhhHHHHhhCChhhhhhcccCCCCCCCchHHhHHHHHHHhhhcCCcccccc
Q 040228          132 AVYVFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITI  211 (831)
Q Consensus       132 a~YV~~ks~~~~~l~~~~ilmFv~GviKygER~wAL~~as~~~~~~S~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  211 (831)
                      ++||++++|+|.++.+|+++||++|++||+||+|||++||.+.+++||..+++++++|+..|++|++....+.+.+....
T Consensus        73 a~Yv~~~~~~g~~l~~~~~lLfv~gi~K~~eR~~AL~~As~~~i~~s~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~  152 (362)
T PF13968_consen   73 ALYVFYKSWSGSRLLAPAILLFVVGIIKYGERIWALRRASSRSIRSSMMGEPDPGPNYAETMEGYKYLVEEEYPKEIRIL  152 (362)
T ss_pred             hheeeeeecccchHHHHHHHHHHHHHHHHHHHHHHHHccchhhhHHhhhhhhcccccchhhccccchhccccccceeeec
Confidence            99999999998889999999999999999999999999999999999999999999999999999876655544443221


Q ss_pred             chhhh-----HHHH-----HHhhhccCchHHHHHHhHHHHHhhhhhhccccccccchhhHHHHhhc-ChhhHHHHHHHHH
Q 040228          212 PEAEK-----KLKV-----ELKKRALTNLDVVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTL-HAEDSLKIIEVEL  280 (831)
Q Consensus       212 ~e~~~-----~~~~-----~~~~~~~~~~~~l~~A~~lf~~~k~lfvD~~~s~~~~~~s~~~~~~~-~~~~afkvvE~EL  280 (831)
                      .+.+.     ..+.     ....++.++++++|.||++|+++|++|+|++++++++.+++++|.++ ++++||||+|+||
T Consensus       153 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~k~l~ls~aLf~llrr~f~d~~~~~~~~~~~~~~~~~l~~~~~af~vie~EL  232 (362)
T PF13968_consen  153 KEEDLETLVTVDKVWESLLDSREESDPELKDLCLSFALFKLLRRRFVDFPLSESGRLKTRDFFRGLDDAERAFRVIEMEL  232 (362)
T ss_pred             cccccccCCccceecccccchhcccccHHHHHHHHHHHHHHHHhhhhCCCcchhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence            11110     0000     01123456788999999999999999999999999999999999886 4899999999999


Q ss_pred             HHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHhhccc-CCcccccchhhHHHHHHHHHHHHHHHHHHHHhchhhH
Q 040228          281 NFIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVK-KDEYEGFDVGITYTLFWGAIALDVVAFFMFIFSDWTL  359 (831)
Q Consensus       281 sfmYD~LYTKa~v~~t~~G~~~R~is~~~t~aAl~lF~~~~~-k~~y~~~DV~ITYvLl~gai~LE~~si~~~~~S~Wt~  359 (831)
                      |||||+||||++|+||+.|+++|+++++++++|+++|...++ +++|+++||+|||+||+|++++|+++++++++|+||+
T Consensus       233 sf~yD~~YTk~~v~~~~~~~~~~~~s~~~~~~a~~lf~~~~~~~~~~~~~Dv~ITy~Ll~~~~~lE~~~~~~~~~S~W~~  312 (362)
T PF13968_consen  233 SFLYDYLYTKAPVVHTWLGLFLRVISLLSTVAALVLFWLSHKKKHGYSRVDVIITYVLLVGAVLLEVWSLLVYLFSDWTK  312 (362)
T ss_pred             HHHHHheeccceeeeeccchHHHHHHHHHHHHHHHHhhccccccccCCccCeehHHHHHHHHHHHHHHHHHHHHcCccHH
Confidence            999999999999999999999999999999999999998732 3789999999999999999999999999999999999


Q ss_pred             HHhhccCCCCcchhhHhhhhhhHHHHHHHHhhhcCCCcccccccccccccchhhhhhhhhcCCCCCcccccccchhhhhH
Q 040228          360 AALTRDRDSNSGFRIIKMVKSFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIR  439 (831)
Q Consensus       360 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~rrWs~sigQyNLl~  439 (831)
                      +++.|+.....          +.   ..|+..                       ..+.+.+. ..+|||++|||||||+
T Consensus       313 v~l~~~~~~~~----------~~---~~~~~~-----------------------~~~~~~~~-~~~rWs~~~gQynll~  355 (362)
T PF13968_consen  313 VSLLCRYRPWW----------RH---SRWVRR-----------------------LIRCLRRW-SRRRWSNKMGQYNLLD  355 (362)
T ss_pred             HHhhhccCccc----------cc---cHHHHH-----------------------HHHHhccc-ccCCcCCccccHHHHH
Confidence            99987531110          00   111111                       11112222 4567999999999999


Q ss_pred             HhhhcC
Q 040228          440 FCLRRR  445 (831)
Q Consensus       440 ~c~~~~  445 (831)
                      +|++++
T Consensus       356 ~c~~~~  361 (362)
T PF13968_consen  356 SCLRER  361 (362)
T ss_pred             HHHhCC
Confidence            999875



>PF04578 DUF594: Protein of unknown function, DUF594; InterPro: IPR007658 This is a family of uncharacterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query831
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 85/613 (13%), Positives = 188/613 (30%), Gaps = 177/613 (28%)

Query: 172 VDRFRESMLSDADPGPNYAKLMEEYESKIKAQLPARIITIPEAEKKLKVELKKRALTNLD 231
           V +F E +L       NY  LM   +++ +          P    ++ +E + R L N D
Sbjct: 79  VQKFVEEVLR-----INYKFLMSPIKTEQRQ---------PSMMTRMYIEQRDR-LYN-D 122

Query: 232 VVHYAHHYFSIFKGLLVDIIYSFRERDDSRNFFRTLH----------AEDSLKIIEVELN 281
              +A +  S  +   + +  +  E   ++N    +           A D     +V+  
Sbjct: 123 NQVFAKYNVSRLQ-PYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 282 FIYEVFYTKVNVTHSWWGVIFRLTASGSVAAALCYFYFRVKKDEYEGFDVGITYTLFWGA 341
             +++F+  +   +S   V+  L         L Y   ++  +     D      L   +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQK-------LLY---QIDPNWTSRSDHSSNIKLRIHS 229

Query: 342 IALDVVAFFM--------FIFSD----WTLAAL---------TRDR---DSNSG-----F 372
           I  ++              +  +        A          TR +   D  S       
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 373 RIIKMVKSFF-AKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLAT-PTLFRRWSG 430
            +     +    ++  L L                 D     L  ++L T P        
Sbjct: 290 SLDHHSMTLTPDEVKSLLL--------------KYLDCRPQDLPREVLTTNPRR------ 329

Query: 431 YVSGHNLIRFCLRRRPEKRHRVKNWFLFASERVLDCLGIGPFLEKMASSIKIFVRSGIEK 490
                ++I   +R          NW      + ++C       +K+ + I+         
Sbjct: 330 ----LSIIAESIRDGL---ATWDNW------KHVNC-------DKLTTIIESS------- 362

Query: 491 TIQCLAFPFKWLTQFKCIRKFNEVSVYIWDIVIYYLWIKFILAVGCWILDFVGIKELLDG 550
            +  L  P ++   F  +  F   S +I  I++  +W   I +    +++ +    L++ 
Sbjct: 363 -LNVLE-PAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 551 IIYVSHEPFTKELWQFIFKEIETKAQYADDPEAAESISSAKGEWIMQDWDPDGMRIKELL 610
                 +  T  +        E K +  ++     SI       I + +D D +    L 
Sbjct: 420 ----QPKESTISIPSIYL---ELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLD 470

Query: 611 SYVTDVAYDESILLWHIA--------------TELLY----FEDKKDEHRTSGTTSDDNT 652
            Y     Y       HI                 +++    F ++K  H ++   +  + 
Sbjct: 471 QYF----Y------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 653 IDESTKEALQKEY---NDLEFSKLLSDYMMYLL-------------IMQPTMMSAVAGIG 696
           ++   +    K Y   ND ++ +L++  + +L              +++  +M+    I 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI- 579

Query: 697 KIRFRDTLAEAKR 709
              F +   + +R
Sbjct: 580 ---FEEAHKQVQR 589


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00