Citrus Sinensis ID: 040250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQCSLN
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccEEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHEEEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccc
APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDahqgfklvtdnittrkprsLLWVVGFVTFFLSSILDNLTTTIVMVSLVRklvppseyrKLLGAVVVIAANaggvwspigdvtTTMLWIHgqistlptmkslfipsaVSLAVPLALLSLTSevnrkgqessnvlaseqmaprgqlvstvgtgALIFVPVfkaltglppymGILLGLGVLWILTDaihygeserqklkvpqalsrinmQVPLFFLGILLSVSSLEAAGLMRKIGNyldahipniDLIASAIGVVSAVIDNVPLVAATIGmydltslpqdseFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLaqapiqcsln
apsteiavselsrasaeVSEIVFFLLGAMTIVEIVDAhqgfklvtdnittrkprslLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQCSLN
APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLgavvviaanaggvWSPIGDVTTTMLWIHGQISTLPTMKSLFIpsavslavplallslTSEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMgillglgvlwilTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSgfafagyaagiaaylaVNSLHFSLRATLAQAPIQCSLN
****************EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT***********************QLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPI*****
****EIA*SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNR**************APRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQC***
**************SAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQCSLN
**STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVN***************APRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQCSLN
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
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APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPIQCSLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
O07187428 Uncharacterized transport yes no 0.779 0.719 0.255 4e-08
P0A607429 Uncharacterized transport no no 0.805 0.741 0.239 6e-06
P0A606429 Uncharacterized transport no no 0.805 0.741 0.239 6e-06
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium tuberculosis GN=Rv2685 PE=3 SV=1 Back     alignment and function desciption
 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 159/376 (42%), Gaps = 68/376 (18%)

Query: 20  EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRK---PRSLLWVVGFVTFFLSSILDNLTT 76
           +++F LLG M IV ++     F+ V      R    P  ++ ++  VT   S++LDN+TT
Sbjct: 56  DVIFLLLGMMIIVSVLRHTGVFEYVAIWAVKRANAAPLRIMILLVLVTALGSALLDNVTT 115

Query: 77  TIVMVS---LVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGD-----------VTTTML 122
            +++     LV   +  +    L+  V   A+N GG  + +GD           +T    
Sbjct: 116 VLLIAPVTLLVCDRLGVNSTPFLVAEV--FASNVGGAATLVGDPPNIIIASRAGLTFNDF 173

Query: 123 WIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQLVS 182
            IH   + L  M +L     + L +P  L S+T+E +R     S +   E +  RG L+ 
Sbjct: 174 LIHMAPAVLVVMIAL-----IGL-LPWLLGSVTAEPDRVADVLS-LNEREAIHDRGLLIK 226

Query: 183 TVGTGALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQAL 237
                 ++ V VF A    P     P +  LLG GVL      + +   ER        L
Sbjct: 227 C----GVVLVLVFAAFIAHPVLHIQPSLVALLGAGVL------VRFSGLERSDY-----L 271

Query: 238 SRINMQVPLFFLGILLSVSSLEAAGLMRKI---------GNYLDAHIPNIDLIASAIGVV 288
           S +     LFF G+ + V +L   G++ ++         GN L      + LI      V
Sbjct: 272 SSVEWDTLLFFAGLFVMVGALVKTGVVEQLARAATELTGGNEL----LTVGLILGISAPV 327

Query: 289 SAVIDNVPLVAATIGMYD--LTSLP---QDSEFWQLIAYCASTGGSMLIIGSAAGVAFMG 343
           S +IDN+P VA    +    + ++P       FW  +A  A  GG++  + ++A V  +G
Sbjct: 328 SGIIDNIPYVATMTPIVTELVAAMPGHVHPDTFWWALALSADFGGNLTAVAASANVVMLG 387

Query: 344 MEKVD----FFWYFRK 355
           + +       FW F +
Sbjct: 388 IARRSGTPISFWKFTR 403

Mycobacterium tuberculosis (taxid: 1773)
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1 Back     alignment and function description
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium tuberculosis GN=Rv2684 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
356536180 568 PREDICTED: uncharacterized protein LOC10 0.982 0.683 0.848 0.0
356536178 578 PREDICTED: uncharacterized protein LOC10 0.982 0.671 0.848 0.0
297834856 575 ATNHD1 [Arabidopsis lyrata subsp. lyrata 0.984 0.676 0.871 0.0
255555303 580 na+/h+ antitransporter, putative [Ricinu 0.984 0.670 0.876 0.0
359475433 676 PREDICTED: uncharacterized protein LOC10 0.979 0.572 0.868 0.0
296090451 570 unnamed protein product [Vitis vinifera] 0.979 0.678 0.868 0.0
147775659432 hypothetical protein VITISV_033163 [Viti 0.979 0.895 0.863 0.0
18402254 576 sodium:hydrogen antiporter 1 [Arabidopsi 0.984 0.675 0.861 0.0
224103659 498 predicted protein [Populus trichocarpa] 0.984 0.781 0.863 0.0
38145480434 Na+/H+ antiporter precursor [Populus eup 0.984 0.896 0.858 0.0
>gi|356536180|ref|XP_003536617.1| PREDICTED: uncharacterized protein LOC100779521 isoform 2 [Glycine max] Back     alignment and taxonomy information
 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/389 (84%), Positives = 362/389 (93%), Gaps = 1/389 (0%)

Query: 1   APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVV 60
           APST+IAVSEL+ ASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR PR LLWV+
Sbjct: 176 APSTDIAVSELTHASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRNPRLLLWVI 235

Query: 61  GFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTT 120
           G VTFFLSS+LDNLT+TIVMVSL+RKLVPPSEYRK+LGAVVVIAANAGG W+PIGDVTTT
Sbjct: 236 GIVTFFLSSVLDNLTSTIVMVSLLRKLVPPSEYRKILGAVVVIAANAGGAWTPIGDVTTT 295

Query: 121 MLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQL 180
           MLWIHGQIST+ T+K LF+PSAVSLAVPLAL+SLTSEVN KGQ S NVLASEQ+APRGQL
Sbjct: 296 MLWIHGQISTVQTVKDLFVPSAVSLAVPLALMSLTSEVNGKGQNSPNVLASEQIAPRGQL 355

Query: 181 VSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRI 240
           V +VG GALIFVPVFKALTGLPPYMG+LLGLGVLWILTDAIHYGESERQKLKVPQALSRI
Sbjct: 356 VFSVGLGALIFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQKLKVPQALSRI 415

Query: 241 NMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAA 300
           + Q  LFFLGILLSVSSLEAAG++R+I NYLDAH+P+ +LIAS IG++SAVIDNVPLVAA
Sbjct: 416 DTQGVLFFLGILLSVSSLEAAGILREIANYLDAHVPSSELIASTIGLISAVIDNVPLVAA 475

Query: 301 TIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFA 360
           T+GMYD+TS PQDSEFWQLIA+CA TGGSMLIIGSAAGVAFMGMEKVDFFWY RK+SGFA
Sbjct: 476 TMGMYDVTSFPQDSEFWQLIAFCAGTGGSMLIIGSAAGVAFMGMEKVDFFWYLRKISGFA 535

Query: 361 FAGYAAGIAAYLAVNSLHFSLRATLAQAP 389
           FAGYAAGI AYLA++ L+ SL  TLA+ P
Sbjct: 536 FAGYAAGIVAYLALHKLNISL-PTLAEVP 563

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356536178|ref|XP_003536616.1| PREDICTED: uncharacterized protein LOC100779521 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297834856|ref|XP_002885310.1| ATNHD1 [Arabidopsis lyrata subsp. lyrata] gi|297331150|gb|EFH61569.1| ATNHD1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255555303|ref|XP_002518688.1| na+/h+ antitransporter, putative [Ricinus communis] gi|223542069|gb|EEF43613.1| na+/h+ antitransporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359475433|ref|XP_002285348.2| PREDICTED: uncharacterized protein LOC100265867 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090451|emb|CBI40270.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775659|emb|CAN60494.1| hypothetical protein VITISV_033163 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18402254|ref|NP_566638.1| sodium:hydrogen antiporter 1 [Arabidopsis thaliana] gi|11994472|dbj|BAB02474.1| unnamed protein product [Arabidopsis thaliana] gi|21537143|gb|AAM61484.1| unknown [Arabidopsis thaliana] gi|332642726|gb|AEE76247.1| sodium:hydrogen antiporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224103659|ref|XP_002313143.1| predicted protein [Populus trichocarpa] gi|222849551|gb|EEE87098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38145480|emb|CAD91128.1| Na+/H+ antiporter precursor [Populus euphratica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2090664576 NHD1 "sodium:hydrogen antiport 0.984 0.675 0.727 7.5e-144
TAIR|locus:2007243420 NHD2 "Na+/H+ antiporter 2" [Ar 0.898 0.845 0.649 2.9e-119
UNIPROTKB|Q9EYG4477 nhaD "Na+/H+ antiporter NhaD" 0.843 0.698 0.276 1.6e-24
TIGR_CMR|VC_A1015477 VC_A1015 "Na+/H+ antiporter" [ 0.843 0.698 0.276 1.6e-24
UNIPROTKB|Q47YD4448 nhaD "Na+/H+ antiporter NhaD" 0.830 0.732 0.239 4.6e-22
TIGR_CMR|CPS_3512448 CPS_3512 "Na+/H+ antiporter Nh 0.830 0.732 0.239 4.6e-22
TIGR_CMR|SO_0935489 SO_0935 "Na+/H+ antiporter" [S 0.316 0.255 0.281 1.3e-21
UNIPROTKB|Q480L5414 CPS_2792 "Putative Na+/H+ anti 0.825 0.787 0.250 3.9e-18
TIGR_CMR|CPS_2792414 CPS_2792 "putative Na+/H+ anti 0.825 0.787 0.250 3.9e-18
TIGR_CMR|CHY_2020423 CHY_2020 "arsenic transporter 0.253 0.236 0.366 3.1e-11
TAIR|locus:2090664 NHD1 "sodium:hydrogen antiporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1406 (500.0 bits), Expect = 7.5e-144, P = 7.5e-144
 Identities = 283/389 (72%), Positives = 311/389 (79%)

Query:     1 APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVV 60
             APSTEIAV +L  A+AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKP++LLWVV
Sbjct:   183 APSTEIAVLDLQHATAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPKTLLWVV 242

Query:    61 GFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLXXXXXXXXXXXXXWSPIGDVTTT 120
             GFVTFFLSSILDNLT+TIVMVSL+RKLVP SEYRKLL             W+PIGDVTTT
Sbjct:   243 GFVTFFLSSILDNLTSTIVMVSLIRKLVPQSEYRKLLGGVVVIAANAGGAWTPIGDVTTT 302

Query:   121 MLWIHGQISTLPTMKSLFIXXXXXXXXXXXXXXXTSEVNRKGQESSNVLASEQMAPRGQL 180
             MLWIHGQISTLPTMK LF+               TSEVN K Q+  +VLASE+MAPRG+L
Sbjct:   303 MLWIHGQISTLPTMKDLFLPSVVSLAVPLALMSLTSEVNGKEQDPKDVLASEKMAPRGKL 362

Query:   181 VSTVGTGALIFVPVFKALTGLPPYMXXXXXXXXXXXXTDAIHYGESERQKLKVPQALSRI 240
             V  VG GAL+FVPVFKALTGLPPYM            TDAIHYGESERQKLKVPQALSRI
Sbjct:   363 VFGVGLGALVFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRI 422

Query:   241 NMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAA 300
             + Q  LFFLGILLSVSSLEAAG++R+I NYLDA+IPN++LIASAIGVVSA+IDNVPLVAA
Sbjct:   423 DTQGALFFLGILLSVSSLEAAGILREIANYLDANIPNVELIASAIGVVSAIIDNVPLVAA 482

Query:   301 TIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSXXX 360
             T+GMYDLTS PQDSEFWQLIA+CA TGGSML+IGSAAGVAFMGMEKVDFFWYFRKVS   
Sbjct:   483 TMGMYDLTSFPQDSEFWQLIAFCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYFRKVSGFA 542

Query:   361 XXXXXXXXXXXXXVNSLHFSLRATLAQAP 389
                          V++LHF +  T+AQ P
Sbjct:   543 FAGYAAGIAAYLAVHNLHFEIPTTVAQIP 571
GO:0009507 "chloroplast" evidence=ISM
GO:0015137 "citrate transmembrane transporter activity" evidence=IEA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS
GO:0015746 "citrate transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=ISS
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0006848 "pyruvate transport" evidence=IMP
GO:0050833 "pyruvate transmembrane transporter activity" evidence=IMP
TAIR|locus:2007243 NHD2 "Na+/H+ antiporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9EYG4 nhaD "Na+/H+ antiporter NhaD" [Vibrio cholerae (taxid:666)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A1015 VC_A1015 "Na+/H+ antiporter" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q47YD4 nhaD "Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3512 CPS_3512 "Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0935 SO_0935 "Na+/H+ antiporter" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q480L5 CPS_2792 "Putative Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2792 CPS_2792 "putative Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2020 CHY_2020 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036648001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (505 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
•       0.510
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
•       0.409
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•       0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
PLN00137424 PLN00137, PLN00137, NHAD transporter family protei 0.0
TIGR00775420 TIGR00775, NhaD, Na+/H+ antiporter, NhaD family 1e-103
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 3e-73
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 2e-38
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 4e-31
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 2e-08
pfam03600377 pfam03600, CitMHS, Citrate transporter 3e-04
>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional Back     alignment and domain information 
 Score =  640 bits (1654), Expect = 0.0
 Identities = 316/377 (83%), Positives = 342/377 (90%)

Query: 1   APSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVV 60
           APS EI   EL  A AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTD+ITTR PR+LLWVV
Sbjct: 48  APSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDSITTRSPRTLLWVV 107

Query: 61  GFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTT 120
           GF+TFFLSSILDNLTTTIVMVSL+RKLVPPSEYRKLLGAVVV+AANAGG W+PIGDVTTT
Sbjct: 108 GFITFFLSSILDNLTTTIVMVSLLRKLVPPSEYRKLLGAVVVVAANAGGAWTPIGDVTTT 167

Query: 121 MLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPRGQL 180
           MLWIHGQISTLPTM+ LF+PSAVSLAVPLAL+SLTSE N   Q+SS +LASEQMAPRGQL
Sbjct: 168 MLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENGSPQDSSPLLASEQMAPRGQL 227

Query: 181 VSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRI 240
           V  VG GAL+FVPVFKALTGLPPYMG+LLGLGVLWILTDAIHYGESERQ LKVPQALSRI
Sbjct: 228 VFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRI 287

Query: 241 NMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAA 300
           + Q  LFFLGILLSV SL+AAG++R++ NYLDA+IPN++LIASAIGV SA+IDNVPLVAA
Sbjct: 288 DTQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVELIASAIGVASAIIDNVPLVAA 347

Query: 301 TIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFA 360
           T+GMYDLT  P DSE WQLIA CA TGGS+L+IGSAAGVAFMGMEKVDFFWY RKVSGFA
Sbjct: 348 TMGMYDLTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRKVSGFA 407

Query: 361 FAGYAAGIAAYLAVNSL 377
           FAGY AGIAAYLAVN  
Sbjct: 408 FAGYVAGIAAYLAVNGF 424

Length = 424
>gnl|CDD|129857 TIGR00775, NhaD, Na+/H+ antiporter, NhaD family Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
PLN00137424 NHAD transporter family protein; Provisional 100.0
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 100.0
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 100.0
PLN00136482 silicon transporter; Provisional 100.0
PRK15445427 arsenical pump membrane protein; Provisional 100.0
cd01118416 ArsB_permease Anion permease ArsB. These permeases 100.0
PRK09547513 nhaB sodium/proton antiporter; Reviewed 100.0
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 100.0
cd01117384 YbiR_permease Putative anion permease YbiR. Based 100.0
TIGR00935429 2a45 arsenical pump membrane protein. 100.0
KOG2639685 consensus Sodium sulfate symporter and related ars 100.0
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 100.0
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 100.0
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 100.0
TIGR00785444 dass anion transporter. Functionally characterized 100.0
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 100.0
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 100.0
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 100.0
PF03600351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.97
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.97
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.96
COG2851433 CitM H+/citrate symporter [Energy production and c 99.88
PLN00136 482 silicon transporter; Provisional 99.86
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.78
cd01118 416 ArsB_permease Anion permease ArsB. These permeases 99.78
PRK09412433 anaerobic C4-dicarboxylate transporter; Reviewed 99.78
PRK15445 427 arsenical pump membrane protein; Provisional 99.77
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 99.73
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 99.73
cd01117 384 YbiR_permease Putative anion permease YbiR. Based 99.71
TIGR00935 429 2a45 arsenical pump membrane protein. 99.71
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.71
TIGR00770430 Dcu anaerobic c4-dicarboxylate membrane transporte 99.69
COG1055 424 ArsB Na+/H+ antiporter NhaD and related arsenite p 99.68
PF03600 351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.65
cd00625 396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 99.65
PLN00137 424 NHAD transporter family protein; Provisional 99.64
TIGR00775 420 NhaD Na+/H+ antiporter, NhaD family. These protein 99.64
TIGR00785 444 dass anion transporter. Functionally characterized 99.63
cd01116 413 P_permease Permease P (pink-eyed dilution). Mutati 99.59
PF02040 423 ArsB: Arsenical pump membrane protein; InterPro: I 99.59
cd01115 382 SLC13_permease Permease SLC13 (solute carrier 13). 99.54
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 99.53
PRK12489443 anaerobic C4-dicarboxylate transporter; Reviewed 99.47
TIGR00774 515 NhaB Na+/H+ antiporter NhaB. These proteins are me 99.45
PRK09547 513 nhaB sodium/proton antiporter; Reviewed 99.43
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 99.42
KOG2639 685 consensus Sodium sulfate symporter and related ars 99.41
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 99.36
PRK15060425 L-dehydroascorbate transporter large permease subu 99.34
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 99.33
TIGR00791440 gntP gluconate transporter. This family includes k 99.33
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 99.29
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 99.29
PRK14984438 high-affinity gluconate transporter; Provisional 99.25
PRK09821454 putative transporter; Provisional 99.21
PRK10472445 low affinity gluconate transporter; Provisional 99.21
PF00939 471 Na_sulph_symp: Sodium:sulfate symporter transmembr 99.19
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 99.18
PRK10034447 fructuronate transporter; Provisional 99.16
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 99.16
TIGR00529387 AF0261 converved hypothetical integral membrane pr 99.1
PRK09921445 permease DsdX; Provisional 99.08
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 99.02
COG0471 461 CitT Di- and tricarboxylate transporters [Inorgani 99.0
COG2610442 GntT H+/gluconate symporter and related permeases 98.99
PRK09412 433 anaerobic C4-dicarboxylate transporter; Reviewed 98.95
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 98.95
PF03605364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 98.94
PRK11588506 hypothetical protein; Provisional 98.94
PRK12489 443 anaerobic C4-dicarboxylate transporter; Reviewed 98.82
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 98.82
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 98.81
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 98.67
TIGR00770 430 Dcu anaerobic c4-dicarboxylate membrane transporte 98.64
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 98.63
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 98.56
COG1288481 Predicted membrane protein [Function unknown] 98.56
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 98.53
COG2056444 Predicted permease [General function prediction on 98.52
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 98.51
TIGR00784 431 citMHS citrate transporter, CitMHS family. This fa 98.49
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 98.43
COG2704436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 98.41
PF03806502 ABG_transport: AbgT putative transporter family; I 98.38
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 98.29
PRK09695 560 glycolate transporter; Provisional 98.08
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 98.04
COG4756367 Predicted cation transporter [General function pre 98.01
PRK10420551 L-lactate permease; Provisional 98.0
COG1906388 Uncharacterized conserved protein [Function unknow 97.94
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 97.92
TIGR00795530 lctP L-lactate transport. The only characterized m 97.92
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 97.89
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 97.89
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 97.87
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.78
PRK15060425 L-dehydroascorbate transporter large permease subu 97.75
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.42
TIGR00931 454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 97.39
COG1620522 LldP L-lactate permease [Energy production and con 97.3
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 97.28
COG2978516 AbgT Putative p-aminobenzoyl-glutamate transporter 97.27
COG4666642 TRAP-type uncharacterized transport system, fused 97.12
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 97.11
TIGR00791 440 gntP gluconate transporter. This family includes k 97.07
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 97.03
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 96.88
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 96.79
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 96.64
PRK10472 445 low affinity gluconate transporter; Provisional 96.62
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 96.62
PF03605 364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 96.61
PRK09821 454 putative transporter; Provisional 96.37
PRK10034 447 fructuronate transporter; Provisional 96.22
PF02447 441 GntP_permease: GntP family permease; InterPro: IPR 96.18
TIGR00529387 AF0261 converved hypothetical integral membrane pr 96.11
TIGR00366438 conserved hypothetical integral membrane protein. 95.91
PRK14984 438 high-affinity gluconate transporter; Provisional 95.88
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 95.84
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 95.8
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 95.44
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 95.42
PRK11588506 hypothetical protein; Provisional 95.29
PRK09921 445 permease DsdX; Provisional 95.16
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 94.88
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 94.87
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 94.44
COG2851 433 CitM H+/citrate symporter [Energy production and c 94.38
COG3817313 Predicted membrane protein [Function unknown] 94.35
COG4756367 Predicted cation transporter [General function pre 94.25
COG2610 442 GntT H+/gluconate symporter and related permeases 94.14
COG1906388 Uncharacterized conserved protein [Function unknow 91.15
PRK10420551 L-lactate permease; Provisional 90.54
TIGR00795530 lctP L-lactate transport. The only characterized m 89.81
PRK09695560 glycolate transporter; Provisional 89.63
TIGR00366438 conserved hypothetical integral membrane protein. 88.89
PF03806502 ABG_transport: AbgT putative transporter family; I 88.7
COG2056444 Predicted permease [General function prediction on 88.68
PF02690142 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR 87.62
PF13194211 DUF4010: Domain of unknown function (DUF4010) 86.56
COG1620522 LldP L-lactate permease [Energy production and con 86.0
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 85.66
COG4666 642 TRAP-type uncharacterized transport system, fused 83.69
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 83.35
COG2704 436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 80.73
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-51  Score=407.66  Aligned_cols=372  Identities=84%  Similarity=1.273  Sum_probs=294.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040250            3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVS   82 (395)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~P   82 (395)
                      +.+++.+.+.|++.+++|++.+++|+|++++.++|+|++|+++.++.++|+|++++.+++.++++|++++|+++++++.|
T Consensus        50 ~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l~~~g~f~~~a~~~~~~~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p  129 (424)
T PLN00137         50 SLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDSITTRSPRTLLWVVGFITFFLSSILDNLTTTIVMVS  129 (424)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             HHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhcccc
Q 040250           83 LVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRK  161 (395)
Q Consensus        83 i~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~  161 (395)
                      ++.++.+..+.++...+.++++||+||+.||+|||||+++++.++++|.||+.++.||.+++.++.+.++++. |++. +
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~aaNiGg~~TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~-~  208 (424)
T PLN00137        130 LLRKLVPPSEYRKLLGAVVVVAANAGGAWTPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENG-S  208 (424)
T ss_pred             HHHHHhhcccchHHHHHHHHHhccccceeccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence            9988733222223335689999999999999999999999988899999988899999998877666666544 4332 1


Q ss_pred             ccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccC
Q 040250          162 GQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIN  241 (395)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~  241 (395)
                      .++.++.+++++.++|++....+.++.+++...++...|+|+++.++.++.++.+.....+++++++++.+++|.++++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vd  288 (424)
T PLN00137        209 PQDSSPLLASEQMAPRGQLVFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRID  288 (424)
T ss_pred             hhhccccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCC
Confidence            11111112233444555544444443333333566678999998888776655443322222222334578999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCChhHHHHHH
Q 040250          242 MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIA  321 (395)
Q Consensus       242 w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~~~~~~l~  321 (395)
                      |+++++|+|+|+++++++++|+.+++++.+....++...+.++++++|+++||+|.+++++|+....+.+...+.|++++
T Consensus       289 w~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~~~~~i~~~s~ilS~~IsNVP~~~~~~p~~~~~~~~~~~~~w~aLa  368 (424)
T PLN00137        289 TQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVELIASAIGVASAIIDNVPLVAATMGMYDLTDYPMDSELWQLIA  368 (424)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcchHHHHHHhhhhhhccCCcchHHHHHHH
Confidence            99999999999999999999999999999987665555688999999999999999999999976333333357899999


Q ss_pred             HHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250          322 YCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVN  375 (395)
Q Consensus       322 ~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~  375 (395)
                      +++|+|||+|++||.+|++.++.++.+|..+++.--|..++++++++.+++.++
T Consensus       369 lga~lGGn~tliGS~Anvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (424)
T PLN00137        369 LCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYVAGIAAYLAVN  422 (424)
T ss_pred             HHhCccchHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887665655555567899999999999887765

>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] Back     alignment and domain information
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>COG3817 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters Back     alignment and domain information
>PF13194 DUF4010: Domain of unknown function (DUF4010) Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 56/435 (12%), Positives = 108/435 (24%), Gaps = 154/435 (35%)

Query: 36  DAHQGFKLVTDNITTRK---------PRSLL--------WVV-GF-------VTFFLSSI 70
           D     KL   +I                LL             F       +T     +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 71  LDNL---TTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQ 127
            D L   TTT + +      + P E + LL                         ++  +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----------------------KYLDCR 314

Query: 128 ISTLPTMKSLFIPSAVSLAVPLALLS------------LTSEVNRKGQESSNVLASEQMA 175
              LP       P  +S+      +                ++    + S NVL   +  
Sbjct: 315 PQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY- 371

Query: 176 PRGQLVSTVGTGALIF---VPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESER--QK 230
            R            +F     +       P  +     L ++W     +   +      K
Sbjct: 372 -RKMFDRLS-----VFPPSAHI-------PTIL-----LSLIW---FDVIKSDVMVVVNK 410

Query: 231 LKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSA 290
           L     + +   +  +    I L         L  K+ N    H               +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLE--------LKVKLENEYALH--------------RS 448

Query: 291 VIDNVPLVAATIGMY---DLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKV 347
           ++D+  +       +   DL     D  F+  I +       +  I     +    M  +
Sbjct: 449 IVDHYNIPKT----FDSDDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFL 498

Query: 348 DFFWYFRKV--SGFAFAGYAAGIA---------AYLAVNS----------LHFSLRA--T 384
           DF +  +K+     A+    + +           Y+  N           L F  +    
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 385 LAQAP----IQCSLN 395
           L  +     ++ +L 
Sbjct: 559 LICSKYTDLLRIALM 573

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
4f35_D449 Transporter, NADC family; transport protein; HET: 100.0
4f35_D 449 Transporter, NADC family; transport protein; HET: 99.73
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=8.3e-43  Score=350.32  Aligned_cols=348  Identities=17%  Similarity=0.141  Sum_probs=254.8

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 040250           12 SRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL   87 (395)
Q Consensus        12 ~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l   87 (395)
                      +|++++|. |++++++|+++++++++|+|++||+|.++.   |+|++++.+.+++.++++|++++|+++++++.|++..+
T Consensus        73 ~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i  152 (449)
T 4f35_D           73 QAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGV  152 (449)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHHHhchHHHHH
Confidence            45667774 699999999999999999999999999885   57999999999999999999999999999999999775


Q ss_pred             C------CCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccc
Q 040250           88 V------PPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNR  160 (395)
Q Consensus        88 ~------~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~  160 (395)
                      .      ++++..+.+++++++++|+||.+||+|+|+|++..+..+++|.||+.+..|+.++..++.+.+.++. ||+.+
T Consensus       153 ~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~  232 (449)
T 4f35_D          153 LSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLN  232 (449)
T ss_dssp             SCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhhhhcCchHHHHHHHHHHHHHHHhccccc
Confidence            1      1222234457899999999999999999999999888899999999999999998888887777665 44432


Q ss_pred             cccCCcccccccccCCchhHHHHHHH--hHHHH-HHHhh-hhcCCChH--HHHHHHHHHHHHHHHhhhccchhhccCCHH
Q 040250          161 KGQESSNVLASEQMAPRGQLVSTVGT--GALIF-VPVFK-ALTGLPPY--MGILLGLGVLWILTDAIHYGESERQKLKVP  234 (395)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~i~~~--~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~  234 (395)
                      +.++.+  ++..+.+++++.......  ..++. ..... ...+....  .+++.+..++ ...          +.+++|
T Consensus       233 ~~~~~~--~~~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll-~~~----------~~l~~~  299 (449)
T 4f35_D          233 GMFELD--RAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILML-SFA----------RVVHWK  299 (449)
T ss_dssp             -----------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH-HHT----------TSSCHH
T ss_pred             ccchhh--ccchhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHh-hhh----------hccchh
Confidence            221111  111222222222221111  11111 11122 22333332  2333222222 221          347899


Q ss_pred             HHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch--h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc-
Q 040250          235 QALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI--D----LIASAIGVVSAVIDNVPLVAATIGMYDL-  307 (395)
Q Consensus       235 ~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~--~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~-  307 (395)
                      |+.+++||+++++++|++.+++++++||+.+|+++.+.+..++.  .    .+.+++.++|+|+||++++++++|+... 
T Consensus       300 ~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~  379 (449)
T 4f35_D          300 EIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIPVFATV  379 (449)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHHHHHHH
T ss_pred             hhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998754332  1    2334456678999999999999999853 


Q ss_pred             -cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250          308 -TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLA  373 (395)
Q Consensus       308 -~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~  373 (395)
                       .+.|.++ ...++.+++++. +++||+|+++|.++++.++++++||+|.|+|.++++.++...+.+.
T Consensus       380 a~~~g~~p~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~  446 (449)
T 4f35_D          380 AEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAML  446 (449)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHC-CCSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHH-HhHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3445443 344566667765 5899999999999999999999999999999999988777665544
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00