Citrus Sinensis ID: 040258

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKRLEYHETVEEDDKPEEPVESEKPEENPEESQPLVEAEEGPQPREEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVQMALLAQQQQQHQHLQQMMLQQQQQQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFLALPNGSTPQQGNHMLL
cccHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHcccccccEEEEEEEcccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEEcccccccccccccccccccccEEEEEEcccccccccHHccccccccHHHHccccHHHHHHHHHHHccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccc
MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKAtnhvecppkerhvRKLFsatsvirpraDVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYshrghilqisnfkddssplawdcSAWVRTYALFLEERLECFRILRYDieserltksspgatkvhsrtrlLNCDELLEQLPALQQLLFRLigcspegaaYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLElarnfqfptlrqpppsfLATMEEYIreapqsgtvqKRLEYHetveeddkpeepvesekpeenpeesqplveaeegpqpreeevepaplipaeatgdllglneevnpkaaELEESNALALAIVqpgndplssnralkeisgsgWELALvttpsnnncqvvdsklagGFDKLLLDSLYEDDSARRHIQLQnagyghagmavpnpfehqqhdpfavsnsiapptNVQMALLAQQQQQHQHLQQMMLQQQQQQHQQMNMMVSYqnqtqypqqsqlpqhQQQMQqmnysnpfgdpflalpngstpqqgnhmll
mgtfqsfrkaygalkdstkvgLAKVNSEFKDLDIAIVKatnhvecppkerhvrklfsatsvirpradVAYCIHALAkrlsktrnwiVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDieserltksspgatkvhsrTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIReapqsgtvqkRLEYHEtveeddkpeepvesekpeenpeesqplveaeegpqpreEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVQMALLAQQQQQHQHLQQMMLQQQQQQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFLALPngstpqqgnhmll
MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDelleqlpalqqllFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKRLEYHetveeddkpeepvesekpeenpeesQPLVeaeegpqpreeevepAPLIPAEATGDLLGLNEEVNPKaaeleesnalalaIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVqmallaqqqqqhqhlqqmmlqqqqqqhqqmNMMVsyqnqtqypqqsqlpqhqqqmqqmnysnpFGDPFLALPNGSTPQQGNHMLL
**********YGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIES*************HSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLR******************************************************************************************************************************ISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGM***************************************************************************************************************
******F***YGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDI********************LLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLA****************************************************************************************************************************************************************************************************SI*******************************************************************************************
MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKRLEY********************************************PAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVQMAL**************************NMMVSYQ*******************QMNYSNPFGDPFLALPNGSTP********
*****SFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESE****************RLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAP*****************************************************************GDLLGLNEEVNPKAAELEESNALALAIVQPGN************SGSGWELALVTTPSNNNCQVV*SKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVQMALLAQQQQQHQHLQQMMLQQQQQQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFLALPNG***********
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MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKRLEYHETVEEDDKPEEPVESEKPEENPEESQPLVEAEEGPQPREEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGMAVPNPFEHQQHDPFAVSNSIAPPTNVQMALxxxxxxxxxxxxxxxxxxxxxQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFLALPNGSTPQQGNHMLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query590 2.2.26 [Sep-21-2011]
Q8VYT2601 Putative clathrin assembl yes no 0.966 0.948 0.679 0.0
Q9LVD8591 Putative clathrin assembl no no 0.947 0.945 0.675 0.0
Q8LBH2571 Putative clathrin assembl no no 0.920 0.950 0.581 1e-176
P94017 692 Putative clathrin assembl no no 0.825 0.703 0.597 1e-169
Q9LHS0544 Putative clathrin assembl no no 0.877 0.952 0.493 1e-137
Q9SA65599 Putative clathrin assembl no no 0.901 0.888 0.333 3e-71
Q8S9J8635 Probable clathrin assembl no no 0.837 0.777 0.306 9e-64
Q8GX47611 Putative clathrin assembl no no 0.872 0.842 0.306 3e-61
Q9ZVN6653 Clathrin coat assembly pr no no 0.510 0.460 0.349 4e-49
Q8LF20653 Putative clathrin assembl no no 0.245 0.222 0.476 3e-35
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function desciption
 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/621 (67%), Positives = 476/621 (76%), Gaps = 51/621 (8%)

Query: 1   MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATS 60
           M TF SFRKA GA+KDST V +AKVNSEFKDLD+AIVKATNHVE  PKERH+R++FSATS
Sbjct: 1   MATFNSFRKAVGAIKDSTTVSIAKVNSEFKDLDVAIVKATNHVESAPKERHIRRIFSATS 60

Query: 61  VIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHIL 120
           V++PRADVAYCIHALAKRLSKTRNW+VAIK LIVIHRTLREGDPTFREELLNYSHRGHIL
Sbjct: 61  VVQPRADVAYCIHALAKRLSKTRNWVVAIKVLIVIHRTLREGDPTFREELLNYSHRGHIL 120

Query: 121 QISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHS-- 178
           +ISNFKDD+SPLAWDCSAW+RTYALFLEERLEC+R+L+YDIE+ERL K S  ++K     
Sbjct: 121 RISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFN 180

Query: 179 -----RTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYC 233
                RTR+L+ +ELLEQLPALQQLL+RLIGC PEG+AY NYL+QYALALVLKESFKIYC
Sbjct: 181 ASQTYRTRMLSDEELLEQLPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYC 240

Query: 234 AINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLR 293
           AINDGIINLVDMFF+MSRHDAVKALNIYKRAGQQAE+LADFYEYCKGLELARNFQFPTLR
Sbjct: 241 AINDGIINLVDMFFEMSRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLR 300

Query: 294 QPPPSFLATMEEYIREAPQSGTVQKRLEYHETVEEDD---------KPEEPVESEKPEEN 344
           QPPPSFLATME+YI+EAPQSG+VQK+LEY E  EE+          +PEEP E++  +EN
Sbjct: 301 QPPPSFLATMEDYIKEAPQSGSVQKKLEYQEKEEEEQEEEEAEHSVQPEEPAEADNQKEN 360

Query: 345 PEESQPLVEAEEGPQPREEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIV 404
            E  QPL+E EE  Q + EE +  P    + T DLLGLN E+NPKAAE+E+ NALALAI 
Sbjct: 361 SEGDQPLIEEEEEDQEKIEEEDAKPSFLID-TDDLLGLN-EINPKAAEIEDRNALALAIY 418

Query: 405 QPGND-PLSSN-RALKEISGSGWELALVT----TPSNNNCQVVDSKLAGGFDKLLLDSLY 458
            PG++ P  SN  +L E  GSGWELALVT      +NN     ++KLAGGFD LLLDSLY
Sbjct: 419 PPGHEAPGPSNILSLIETGGSGWELALVTPQNNNNNNNPRPAPNTKLAGGFDNLLLDSLY 478

Query: 459 EDDSARRHIQLQNAGYGHAGM----AVPNPFEHQQHDPFAVSNSIAPPTNVQMALLAQQQ 514
           EDDSARR IQL NAGYGH G+    A PNPF+ QQ DPFA+SN+IAPPTNVQMA      
Sbjct: 479 EDDSARRQIQLTNAGYGHGGIDTTAAPPNPFQMQQ-DPFAMSNNIAPPTNVQMA------ 531

Query: 515 QQHQHLQQMMLQQQQQQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFL 574
                       QQQQQ Q   M  S  N T      Q   H Q     + SNPFGD FL
Sbjct: 532 -----------MQQQQQQQMTMMHQSPYNYTHPHDYHQNHHHHQFSAGPSPSNPFGDAFL 580

Query: 575 AL---PNGSTPQQGN--HMLL 590
           AL   P  + PQQ N  HMLL
Sbjct: 581 ALPPPPGSAGPQQNNHHHMLL 601

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
449521830596 PREDICTED: LOW QUALITY PROTEIN: putative 0.989 0.979 0.767 0.0
255573771566 clathrin assembly protein, putative [Ric 0.950 0.991 0.754 0.0
449463585581 PREDICTED: putative clathrin assembly pr 0.962 0.977 0.757 0.0
224142705580 predicted protein [Populus trichocarpa] 0.977 0.994 0.708 0.0
225470666591 PREDICTED: putative clathrin assembly pr 0.989 0.988 0.716 0.0
224087311578 predicted protein [Populus trichocarpa] 0.974 0.994 0.713 0.0
356532686595 PREDICTED: putative clathrin assembly pr 0.983 0.974 0.699 0.0
356550726579 PREDICTED: putative clathrin assembly pr 0.957 0.975 0.683 0.0
357449589646 hypothetical protein MTR_2g037980 [Medic 0.986 0.900 0.697 0.0
356564823579 PREDICTED: putative clathrin assembly pr 0.952 0.970 0.680 0.0
>gi|449521830|ref|XP_004167932.1| PREDICTED: LOW QUALITY PROTEIN: putative clathrin assembly protein At4g25940-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/602 (76%), Positives = 503/602 (83%), Gaps = 18/602 (2%)

Query: 1   MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATS 60
           MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRK+FSATS
Sbjct: 1   MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKIFSATS 60

Query: 61  VIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHIL 120
           V+RPRADVAYCIHALAKRLSKTRNWIVA+KTLIV+HRTLREGDPTFREELLNYSHRGHIL
Sbjct: 61  VVRPRADVAYCIHALAKRLSKTRNWIVALKTLIVVHRTLREGDPTFREELLNYSHRGHIL 120

Query: 121 QISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRT 180
           QISNFKDDSSPLAWDCSAWVRTYALFLEERLEC+RIL+YDIESERLTK+SPG+TKVHSRT
Sbjct: 121 QISNFKDDSSPLAWDCSAWVRTYALFLEERLECYRILKYDIESERLTKTSPGSTKVHSRT 180

Query: 181 RLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGII 240
           RLLN DELLEQLPALQQLL+RL+GC PEG AY NYL+QYALALVLKESFKIYCAINDGII
Sbjct: 181 RLLNSDELLEQLPALQQLLYRLMGCQPEGGAYSNYLIQYALALVLKESFKIYCAINDGII 240

Query: 241 NLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFL 300
           NLVDMFFDM RHDAVKALNIYKRA  QAE+LADFYEYCKGLELAR FQFPTL+QPPPSFL
Sbjct: 241 NLVDMFFDMPRHDAVKALNIYKRASNQAENLADFYEYCKGLELARTFQFPTLKQPPPSFL 300

Query: 301 ATMEEYIREAPQSGTVQKRLEYHET---VEEDDKPEEPVESEKPEENPEESQPLVEAEEG 357
           +TMEEYIREAPQ+G+V KRLEY E     +E DKPEEP E  K  EN E+++P VE EE 
Sbjct: 301 STMEEYIREAPQTGSVNKRLEYREAEQLTQEQDKPEEPGEIXKEVENVEDNKPPVETEEE 360

Query: 358 PQPREEEV-EPAPLIPAEATGDLLGLNEEVNPKAAELEESNALALAIVQPGNDPLSSNRA 416
           PQ +E EV EP PLI      DLLGLN E+NP+AAE+EESNALALAI+  GNDP SSNRA
Sbjct: 361 PQQKEGEVAEPPPLIATHDASDLLGLN-EINPRAAEIEESNALALAIITNGNDPSSSNRA 419

Query: 417 LKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGH 476
           L EI GSGWELALVTTPSNN    V+ KLAGGFDKLLLDSLYED+ ARRH+QLQNAGYG 
Sbjct: 420 LSEIGGSGWELALVTTPSNNAGPSVEGKLAGGFDKLLLDSLYEDEHARRHLQLQNAGYGP 479

Query: 477 AG-MAVPNPFEHQQHDPFAVSNSIAPPTNVQMALLAQQQQQHQHLQQMML-------QQQ 528
            G M V NPFE  QHDPF++S++IAPP +VQMA++AQQQQ     QQ          QQQ
Sbjct: 480 YGEMMVHNPFE--QHDPFSLSSNIAPPPSVQMAMMAQQQQMLFQHQQQQPLQSNAFPQQQ 537

Query: 529 QQQHQQMNMMVSYQNQTQYPQQSQLPQHQQQMQQMNYSNPFGDPFLALPNGSTPQQGNHM 588
           QQ H   +MM+    Q          Q  QQMQQ+  SNPFGDPFL+ P  S P  G+H 
Sbjct: 538 QQLHSNDSMMMVPYQQQ---LPQYPQQQMQQMQQIGPSNPFGDPFLSFPQTSVPPGGHHN 594

Query: 589 LL 590
           L+
Sbjct: 595 LI 596

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573771|ref|XP_002527806.1| clathrin assembly protein, putative [Ricinus communis] gi|223532802|gb|EEF34578.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449463585|ref|XP_004149514.1| PREDICTED: putative clathrin assembly protein At4g25940-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142705|ref|XP_002324695.1| predicted protein [Populus trichocarpa] gi|222866129|gb|EEF03260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225470666|ref|XP_002269299.1| PREDICTED: putative clathrin assembly protein At5g57200 [Vitis vinifera] gi|296090283|emb|CBI40102.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087311|ref|XP_002308116.1| predicted protein [Populus trichocarpa] gi|222854092|gb|EEE91639.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532686|ref|XP_003534902.1| PREDICTED: putative clathrin assembly protein At5g57200-like [Glycine max] Back     alignment and taxonomy information
>gi|356550726|ref|XP_003543735.1| PREDICTED: putative clathrin assembly protein At4g25940-like [Glycine max] Back     alignment and taxonomy information
>gi|357449589|ref|XP_003595071.1| hypothetical protein MTR_2g037980 [Medicago truncatula] gi|355484119|gb|AES65322.1| hypothetical protein MTR_2g037980 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564823|ref|XP_003550647.1| PREDICTED: putative clathrin assembly protein At4g25940-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.850 0.849 0.666 3.4e-180
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.528 0.546 0.753 2.9e-146
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.545 0.535 0.793 1.1e-144
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.528 0.450 0.721 8.9e-143
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.516 0.560 0.566 7.3e-111
TAIR|locus:2040115653 AT2G25430 [Arabidopsis thalian 0.245 0.222 0.476 2.7e-62
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.245 0.228 0.476 2.2e-61
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.516 0.509 0.356 4.1e-59
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.276 0.266 0.426 6.1e-55
TAIR|locus:2205558653 AT1G05020 [Arabidopsis thalian 0.467 0.422 0.342 6e-37
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 3.4e-180, Sum P(2) = 3.4e-180
 Identities = 350/525 (66%), Positives = 392/525 (74%)

Query:     1 MGTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATS 60
             MGTF SFRKAYGALKD+T VGLAKVNSEFKDLDIAIVKATNHVE PPKERHVRK+FSATS
Sbjct:     1 MGTFTSFRKAYGALKDTTTVGLAKVNSEFKDLDIAIVKATNHVESPPKERHVRKIFSATS 60

Query:    61 VIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHIL 120
             VI+PRADVAYCIHAL+KRLSKTRNW+VA+K LIVIHRTLREGDPTFREELLNYSHR HIL
Sbjct:    61 VIQPRADVAYCIHALSKRLSKTRNWVVAMKVLIVIHRTLREGDPTFREELLNYSHRRHIL 120

Query:   121 QISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRT 180
             +ISNFKDD+SPLAWDCSAWVRTYALFLEERLEC+R+L+YDIE+ERL K+S  A+K H RT
Sbjct:   121 RISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTH-RT 179

Query:   181 RLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGII 240
             R+L+ +             +RLIGC PEGAAY NYL+QYALALVLKESFKIYCAINDGII
Sbjct:   180 RMLSGEDLLEQLPALQQLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGII 239

Query:   241 NLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFL 300
             NLVDMFF+MSRHDAVKALNIYKRAGQQAE+LA+FY+YCKGLELARNFQFPTLRQPPPSFL
Sbjct:   240 NLVDMFFEMSRHDAVKALNIYKRAGQQAENLAEFYDYCKGLELARNFQFPTLRQPPPSFL 299

Query:   301 ATMEEYIREAPQSGTVQKRLEYHXXXXXXXXXXXX-----XXXXXXXXXXXXXQPLVXXX 355
             ATMEEYI+EAPQSG+VQK+LEY                               QPL+   
Sbjct:   300 ATMEEYIKEAPQSGSVQKKLEYQEKEEEEQEQEEEQPEEPAEEENQNENTENDQPLIEEE 359

Query:   356 XXXXXXXXXXXXAPLIPAEATGDLLGLNEEVNPKXXXXXXXXXXXXXIVQPGNDPLSSNR 415
                         A   P   T DLLGL+E +NPK             I  PG++  + + 
Sbjct:   360 EEEPKEEIEVEEAKPSPLIDTDDLLGLHE-INPKAAEIEQNNAFSLAIYPPGHETSAPSN 418

Query:   416 ALK--EISGSGWELALVTTPSNNNCQ-----VVDSKLAGGFDKLLLDSLYEDDSARRHIQ 468
             +L   E  GSGWELALVT  +NNN       V+ +KL GGFD LLLDSLYEDD+ARR IQ
Sbjct:   419 SLSLIEAGGSGWELALVTPQNNNNNNNNPRPVIATKLGGGFDNLLLDSLYEDDTARRQIQ 478

Query:   469 LQNAGYGHAGMAVP--------NPFEHQQHDPFAVSNSIAPPTNV 505
             L NAGYG    A+P        NPF  QQ DPFA+SN++APPTNV
Sbjct:   479 LTNAGYGFGATAIPGALASSNPNPFGVQQ-DPFAMSNNMAPPTNV 522
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYT2CAP6_ARATHNo assigned EC number0.67950.96610.9484yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00181261
hypothetical protein (580 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
pfam07651278 pfam07651, ANTH, ANTH domain 1e-116
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 8e-44
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 6e-38
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-05
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-05
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-04
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 1e-04
pfam01417124 pfam01417, ENTH, ENTH domain 1e-04
PRK10927319 PRK10927, PRK10927, essential cell division protei 1e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-04
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 2e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  345 bits (887), Expect = e-116
 Identities = 127/282 (45%), Positives = 179/282 (63%), Gaps = 5/282 (1%)

Query: 29  FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVA 88
             DL++A+VKAT+H E PPK++HVR++   TS     A VA    AL++RL  TRNW+VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREILVGTS---SPAKVAALFWALSRRLPLTRNWVVA 57

Query: 89  IKTLIVIHRTLREGDPTFREELLNYSHRG-HILQISNFKDDSSPLAWDCSAWVRTYALFL 147
           +K LI++H+ LREG P+  +ELL    R   +L+IS+F DDS  L WD  A++R YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 148 EERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSP 207
           +ERL+  R L  D   ER+   S  A    +    ++ ++LL+ +P LQ+LL  L+ C P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 208 EGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQ 267
            G A  N  +  AL L++KESF +Y AIN+GIINL++ FF+MS+ DA  AL IYKR   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 268 AESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIRE 309
            E L +FYE CK L   R+ + P L   PP+ L  +EE++R+
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.36
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.18
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.1
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.7
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.99
KOG2057499 consensus Predicted equilibrative nucleoside trans 97.56
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.62
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.48
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.42
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.33
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.2
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.08
cd03561133 VHS VHS domain family; The VHS domain is present i 94.78
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 86.43
KOG2199462 consensus Signal transducing adaptor protein STAM/ 86.39
KOG0414 1251 consensus Chromosome condensation complex Condensi 85.37
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2e-91  Score=759.09  Aligned_cols=461  Identities=42%  Similarity=0.652  Sum_probs=357.9

Q ss_pred             HHHhhhccccceeeeeecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHH
Q 040258            9 KAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVA   88 (590)
Q Consensus         9 ka~GalKD~tsig~Akv~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVA   88 (590)
                      +|+|++||++|||+|+|++.++++++||+|||+|+++|||+|||+.|+.+|+.++  +++.+|+++|++||++||||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            5789999999999999998889999999999999999999999999999999875  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 040258           89 IKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTK  168 (590)
Q Consensus        89 lKtLIllHrLLreG~psf~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d~~~~~l~~  168 (590)
                      +||||||||||++|+++|.+++..+   .++|+|++|+|++++.+|||++|||+|++||++|++||+.+++|++..+..+
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~~---~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~  155 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLSR---NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGK  155 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhc---ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence            9999999999999999999888554   4799999999999999999999999999999999999999999998543211


Q ss_pred             CCCCCCccccccccCC-HHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040258          169 SSPGATKVHSRTRLLN-CDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFF  247 (590)
Q Consensus       169 ~~~~~~~~~~~~r~l~-~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fF  247 (590)
                             .....+++. ++.+|+.+++||.+|+++|+|+|.+.+++|.||++||.+||+|||+||++||+||++|||+||
T Consensus       156 -------~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff  228 (491)
T KOG0251|consen  156 -------EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF  228 (491)
T ss_pred             -------cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   123345566 778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHHhCCCCCccccc-ccccccC
Q 040258          248 DMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKR-LEYHETV  326 (590)
Q Consensus       248 eM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylrda~~~~~~~~~-~~~~~~~  326 (590)
                      ||+++||+++|+|||||.+|+|+|.+||++||.+|+.|.++||+|+++|.++|++|||||++.+..+...+. ...+...
T Consensus       229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~  308 (491)
T KOG0251|consen  229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFS  308 (491)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccc
Confidence            999999999999999999999999999999999999999999999999999999999999997643322111 1111100


Q ss_pred             CCCCCCCC--C-CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCchhhhhhhhccc
Q 040258          327 EEDDKPEE--P-VESEKPEENPEESQPLV----EAEEGPQPREEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNAL  399 (590)
Q Consensus       327 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~dll~l~~~~~~~~~~~~~~~~l  399 (590)
                      .+.+..+.  . ....+..+ .  ++..+    ..+..|.+.++.++..+.. ...++|++.+.+ ..+..++.+..|+|
T Consensus       309 ~~~~~~e~~~~~~~~~e~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l  383 (491)
T KOG0251|consen  309 TDFESSESSSRLEEPEEQKE-V--IEELQEPLEQEEDQPSPNSENPEANDQA-GIATDDLLLQPD-NLPMFSASTAPNAL  383 (491)
T ss_pred             cchhccccccccccchhhhh-c--cccccccccccccCCCCCCCCccccccc-cccCcchhhccc-CCCccccccCcchh
Confidence            11000110  0 00001110 0  11111    1111111110011111110 012234444443 46788999999999


Q ss_pred             hhccccCCCCCCCCcccccccCCCcceeeeccCCCCCccccccccccCCcchhhhhccchHHHHHHHHhhhcCCCCCCCC
Q 040258          400 ALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGM  479 (590)
Q Consensus       400 ala~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~~~~~~l~Gg~d~l~Ld~~y~~~~~~~~~~~~~~~~g~~~s  479 (590)
                      |||+ . .+          .++++|||+++|+..++.-...+..++||||   +||||| ++.+|+.++.++.++|++.+
T Consensus       384 ~~~~-~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~  447 (491)
T KOG0251|consen  384 ALAL-P-FP----------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPF  447 (491)
T ss_pred             hcCC-C-CC----------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCcc
Confidence            9998 2 21          3467889999998776554322212899999   999999 88888876554556676666


Q ss_pred             CC-CCCCCC--CCCCcccccCCCCCC
Q 040258          480 AV-PNPFEH--QQHDPFAVSNSIAPP  502 (590)
Q Consensus       480 ~a-~~p~~~--~~~dpFaaS~~v~pp  502 (590)
                      ++ |+..+.  .+.+||+.|..+++|
T Consensus       448 ~~~p~~~~~~~~~~~~~~~~~~~a~~  473 (491)
T KOG0251|consen  448 GAQPMPAMAALPQPYPVGQPPFPAQL  473 (491)
T ss_pred             ccCCchhhhcccccCCCCCCCCcCcc
Confidence            54 322222  355899999988887

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 5e-23
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 7e-23
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 9e-20
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 2e-19
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 5e-17
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 15/273 (5%)
Query: 35  AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
            + KAT H    PK++H+  L   T+ +    ++     +L +R + + +W+V  K+LI 
Sbjct: 32  TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95  IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154
            H  +  G+  F + L   + R  +  +SNF D S    +D S ++R Y+ +L E+   +
Sbjct: 89  THHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHN 214
           R + +D      TK   GA  V    R +N +               L+  +       N
Sbjct: 146 RQVAFD-----FTKVKRGADGV---MRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTN 197
Query: 215 YLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADF 274
            ++  A  L+ K++ +++ A N+GIINL++ +FDM ++   + L+IYK+   +   +++F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YEYCKGLELARNFQFPTLRQPPPSFLATMEEYI 307
            +  + + + R    P L Q P S L  +E+++
Sbjct: 258 LKVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 1e-91
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 3e-90
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 3e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 3e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-04
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 2e-05
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 4e-05
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 5e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  282 bits (722), Expect = 1e-91
 Identities = 65/285 (22%), Positives = 133/285 (46%), Gaps = 16/285 (5%)

Query: 2   GTFQSFRKAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSV 61
           G+      +  +L D        V      +   + KAT H    PK++H+  L   T+ 
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTN- 57

Query: 62  IRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQ 121
                ++     +L +R + + +W+V  K+LI  H  +  G+  F + L   + R  +  
Sbjct: 58  -EMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYL---ASRNTLFN 112

Query: 122 ISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTR 181
           +SNF D S    +D S ++R Y+ +L E+   +R + +D    +               R
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGA--------DGVMR 164

Query: 182 LLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIIN 241
            +N ++LL+ +P +Q  +  L+  +       N ++  A  L+ K++ +++ A N+GIIN
Sbjct: 165 TMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIIN 224

Query: 242 LVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARN 286
           L++ +FDM ++   + L+IYK+   +   +++F +  + + + R 
Sbjct: 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.5
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.48
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.23
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.21
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.36
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.71
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.47
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.37
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.28
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.25
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.13
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.1
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 94.7
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.24
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 80.47
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=1.9e-72  Score=582.19  Aligned_cols=284  Identities=25%  Similarity=0.471  Sum_probs=244.9

Q ss_pred             CcchhHHHHHHhhhc-cccceeeeeecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhh
Q 040258            1 MGTFQSFRKAYGALK-DSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRL   79 (590)
Q Consensus         1 m~~~~~~rka~GalK-D~tsig~Akv~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL   79 (590)
                      |++ ++||+++|++| |+|++          ++++||+|||+|+++|||+||||+||.+|+.++  +++++|+++|.+| 
T Consensus         3 ~~~-~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-   68 (299)
T 1hx8_A            3 MAG-QTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-   68 (299)
T ss_dssp             --------------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-
T ss_pred             Cch-HHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-
Confidence            453 78999999999 98874          688899999999999999999999999999865  7899999999999 


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCcchHHHHHhhhhcCcccccccccCCCC-----------CCCCcccHHHHHHHHHHH
Q 040258           80 SKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSS-----------PLAWDCSAWVRTYALFLE  148 (590)
Q Consensus        80 ~kTrnWiVAlKtLIllHrLLreG~psf~~ell~y~rr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLd  148 (590)
                      .+++||+||||||||||||||||||+|.+++.   +++++|+|++|+|+++           +.+||||.|||+|++||+
T Consensus        69 ~~~~~w~va~K~LivlH~llreG~~~~~~~l~---~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~  145 (299)
T 1hx8_A           69 SQNANWVVVYKSLITTHHLMAYGNERFMQYLA---SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN  145 (299)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence            58999999999999999999999999988873   3567999999999865           357899999999999999


Q ss_pred             HHHHHhhhhcccccccccccCCCCCCccccccccCCHHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHH
Q 040258          149 ERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKES  228 (590)
Q Consensus       149 eRL~~~r~l~~d~~~~~l~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS  228 (590)
                      +|+.+|+.+++|++..+     .+  .+..++++|+++.||++++.||++||++++|+|.+.+.+|+|+++||++||+||
T Consensus       146 ~r~~~f~~~~~d~~~~~-----~~--~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds  218 (299)
T 1hx8_A          146 EKSLSYRAMAFDFCKVK-----RG--KEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDL  218 (299)
T ss_dssp             HHHHHHHHHSSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCccccc-----cC--ccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHH
Confidence            99988999999987321     11  134578899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHH
Q 040258          229 FKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIR  308 (590)
Q Consensus       229 ~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylr  308 (590)
                      ++||+++|+||++|||+||+|++.||++||+||+||.+|+++|++||++||++++++ ++||+|+++|++||++|||||+
T Consensus       219 ~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~  297 (299)
T 1hx8_A          219 IRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLA  297 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999977 8999999999999999999998


Q ss_pred             h
Q 040258          309 E  309 (590)
Q Consensus       309 d  309 (590)
                      +
T Consensus       298 ~  298 (299)
T 1hx8_A          298 T  298 (299)
T ss_dssp             T
T ss_pred             h
Confidence            6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 590
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 6e-54
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 2e-53
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 4e-45
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 2e-42
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 6e-25
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  177 bits (451), Expect = 6e-54
 Identities = 34/131 (25%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 178 SRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAIND 237
              R +N ++LL+ LP LQ  L  L+    +     N ++  +  L+ ++  +++   ND
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 238 GIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPP 297
           GIINL++ +FDM++  A  AL++YK+   + + + +F +  + + + +    P L + P 
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKG-DIPDLTKAPS 120

Query: 298 SFLATMEEYIR 308
           S L  +E+++ 
Sbjct: 121 SLLDALEQHLA 131
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.83
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.5
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.4
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.36
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.58
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 93.83
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=5.9e-39  Score=293.05  Aligned_cols=130  Identities=26%  Similarity=0.531  Sum_probs=127.5

Q ss_pred             ccccCCHHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH
Q 040258          179 RTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKAL  258 (590)
Q Consensus       179 ~~r~l~~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaL  258 (590)
                      ++|+|++++||++++++|++|+|+++|+|.|++.+|+||++||++||+|||+||+.+|+|||||||+||||+++||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHHh
Q 040258          259 NIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIRE  309 (590)
Q Consensus       259 eIYkRf~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylrd  309 (590)
                      +|||||++|+++|..||+|||++|++| .+||+|+++|+++|++|||||++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999988 69999999999999999999985
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure