Citrus Sinensis ID: 040274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
EISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF
Secondary Structure (PSIPRED)
cccccccccEEEEEccccEEEEEccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEcccccEEEEEcccccEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccEEEcccccEEEEEcccEEEEcccccccccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHEEEccccEEEEEEccccEEEEEccccccHHHHEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccHcccccccccEEEccccEEEEEcccEEEEEEcccccccccccEEccccccccEEEEEEEcHHHEEEEccccccEEEEEcccccccccHHcccccccHHHHHHHHHHHHHHHccccHEEccHcHccccccccHHHHHHHHHHHHHHccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccc
Coil and Loop (DISEMBL)
EISYELDTKVKKYLrgedfkrqklkgqlplreeLYGKSAKAAAKVEKNLVHILWILpssgrymavagrrtdlmrvnpfngvvslghsggtvtmwKPTTSALLIKMLYhqgpvsalafhpnghlmattgkecKIKIWDLRKYEVLQTLTGhaktldfsqkgllavgtGSFAQILGdfsgshnysrymgnsmvkgyqigkvsfrpyedvlgighsmgwsgilvprssepnfdswvanpfetskQRREKEVHSLLDKLLLETIMlnpskigtvreakkkekptkqgREAEMEAAVEAIKGFVWknktkgrnkpskkAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEevelpaslrrf
Flexible Loop (DISEMBL)
eisyeldtkvkkylrgedfkrqklkgqlplreELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSlghsggtvTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPfetskqrrEKEVHSLLDKLLletimlnpskigtvreakkkekptkqgreaeMEAAVEAIKgfvwknktkgrnkpskkakkkqeliaharrpfldqQLKEEQSlskkkqklfeevelpaslrrf
Low Complexity Region (SEG)
EISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFLDqqlkeeqslskkkqklfeeVELPASLRRF
Disordered region (IsUnstruct)
*********************************LYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR*****FDSWV****************SLLDKLLLETIMLN*****************************EAIKGFVW***********************************************************
Disordered Region (DISOPRED)
EISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVR*********************************************************************************PASLRRF
Disordered Region (DISEMBL)
EISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFET*********HSLLDKLLLETIMLNPSKIGTV*****************MEAAVEAIKGFVWKNKT***************LIAHARRPFLDQ***********KQKLFEEVELPASLRRF
Disordered Region (DISPRO)
*ISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREA************************SKKAKKKQELIAHARRPFLDQQLKEEQSLSK******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EISYELDTKVKKYLRGEDFKRQKLKGQLPLREELYGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFxxxxxxxxxxxxxxxxxxxxxVELPASLRRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q9P4X3	520	Probable U3 small nucleol	yes	no	0.757	0.523	0.375	8e-43
Q5TJE7	612	WD repeat-containing prot	yes	no	0.782	0.459	0.372	2e-40
Q9Z0H1	622	WD repeat-containing prot	yes	no	0.802	0.463	0.374	5e-40
O15213	610	WD repeat-containing prot	no	no	0.771	0.454	0.368	9e-40
P40055	554	U3 small nucleolar RNA-as	yes	no	0.746	0.483	0.327	1e-38
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.437	0.238	0.245	1e-08
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.437	0.239	0.245	1e-08
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.431	0.101	0.254	3e-08
Q7ZVF0	416	POC1 centriolar protein h	no	no	0.306	0.264	0.324	7e-08
Q5JTN6	314	WD repeat-containing prot	no	no	0.214	0.245	0.3	1e-07

>sp|Q9P4X3|UTP7_SCHPO Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=3 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 162/290 (55%), Gaps = 18/290 (6%)

Query: 70  TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK 129
           + ++  NP N V  +GH+ G VT+W P+++  L+KML H+GPV  LA + +G  M T G 
Sbjct: 226 SHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGA 285

Query: 130 ECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMG 187
           +  +K+WDLR Y+ L +      A+ L  S +GLLAVG G  A I  D   +     YM 
Sbjct: 286 DSLLKVWDLRTYKELHSYYTPTPAQRLTLSDRGLLAVGWGPHATIWKDALRTKQNFPYM- 344

Query: 188 NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKE 247
           N ++    +  + + PYED+LGIGH+ G+  I+VP S EPN+DS+  +PF + KQR+E E
Sbjct: 345 NHLLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQETE 404

Query: 248 VHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGR 307
           V  LL+KL  E I LN   IG V      ++     R+AE E      + +V K K +G+
Sbjct: 405 VRQLLEKLRPEMISLNADFIGNV------DRAAPSLRKAEAEEEKPPEEKWVPKAKARGK 458

Query: 308 NKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKK----QKLFEEVELP 353
           N   ++  +K     HAR     ++LK E+SL  +K    Q++  E +LP
Sbjct: 459 NSALRRYLRK-----HARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLP 503

Involved in nucleolar processing of pre-18S ribosomal RNA.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5TJE7|WDR46_CANFA WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 169/301 (56%), Gaps = 20/301 (6%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           R D+M  NP+N V+ LGHS GTV++W P     L K+L H+G V A+A    G  MAT+G
Sbjct: 320 RLDVMTKNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSG 379

Query: 129 KECKIKIWDLR-KYEVL--QTLTGHAKTLDFSQKGLLAVGTGSFAQI---LGDFSGSHNY 182
            + ++KI+DLR  ++ L  +TL   A  L FSQ+GLLA G      I    G  S     
Sbjct: 380 LDHQLKIFDLRGMFQPLSARTLPQGAGHLAFSQRGLLAAGMSDVVNIWMGQGMASPPSLE 439

Query: 183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQ 242
             Y+ + +  G+  G + F P+EDVLG+GHS G + +LVP ++EPNFD    NP+ + KQ
Sbjct: 440 QPYLTHRL-SGHVHG-LHFCPFEDVLGLGHSGGITSMLVPGAAEPNFDGLENNPYRSQKQ 497

Query: 243 RREKEVHSLLDKLLLETIMLNPSKIGTVR----EAKKKEKPTKQGREAEMEAAVEAIKGF 298
           R+E EV +LL+K+  E I L+P  +  V     E +KKE+  + G + E +A       F
Sbjct: 498 RQEWEVKALLEKVPAELICLDPRALAEVDVISLEQEKKERIERLGYDPEAKAP------F 551

Query: 299 VWKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRR 358
             K K KGR+  +   K++++++    R  + Q L+++    +KK K  +    P++L R
Sbjct: 552 QPKPKQKGRSSTASLVKRRRKVMDKEHRDKVRQSLEQQPQKQEKKAKPLK--ARPSALDR 609

Query: 359 F 359
           F
Sbjct: 610 F 610

Canis familiaris (taxid: 9615)

>sp|Q9Z0H1|WDR46_MOUSE WD repeat-containing protein 46 OS=Mus musculus GN=Wdr46 PE=2 SV=1

 Score =  165 bits (418), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 170/307 (55%), Gaps = 19/307 (6%)

Query: 63  MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGH 122
           + V   R  +M  NP+N V+ LGHS GTV++W P     L K+L H+G V A+A    G 
Sbjct: 312 LNVRAGRLSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGT 371

Query: 123 LMATTGKECKIKIWDLR-KYEVL--QTLTGHAKTLDFSQKGLLAVGTGSFAQIL---GDF 176
            MAT+G + ++KI+DLR  ++ L  +TL   A  L FSQ+GLL  G G    I    G  
Sbjct: 372 YMATSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKA 431

Query: 177 SGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANP 236
           S       Y+ + +  G+  G + F P+EDVLG+GHS G++ +LVP ++EPNFD    NP
Sbjct: 432 SPPSLEQPYLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNP 489

Query: 237 FETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVR----EAKKKEKPTKQGREAEMEAAV 292
           + + KQR+E EV +LL+K+  E I LNP  +  V     E +KKE+  + G + + +AA 
Sbjct: 490 YRSRKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQKKERIERLGYDPDAKAA- 548

Query: 293 EAIKGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVEL 352
                F  K K KGR+  +   K+K++++    R  + Q L E+Q   KK+         
Sbjct: 549 -----FQPKAKQKGRSSTASLVKRKKKVMDQEHRDKVRQSL-EQQQQKKKQDMAMPPGAR 602

Query: 353 PASLRRF 359
           P++L RF
Sbjct: 603 PSALDRF 609

Mus musculus (taxid: 10090)

>sp|O15213|WDR46_HUMAN WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 27/304 (8%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           R D+M  NP+N V+ LGHS GTV++W P     L K+L H+G V A+A    G  MAT+G
Sbjct: 319 RLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSG 378

Query: 129 KECKIKIWDLR-KYEVL--QTLTGHAKTLDFSQKGLLAVGTGSFAQIL---GDFSGSHNY 182
            + ++KI+DLR  Y+ L  +TL   A  L FSQ+GLL  G G    I    G  S     
Sbjct: 379 LDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLE 438

Query: 183 SRYMGNSM---VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFET 239
             Y+ + +   V G Q     F P+EDVLG+GH+ G + +LVP + EPNFD   +NP+ +
Sbjct: 439 QPYLTHRLSGPVHGLQ-----FCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRS 493

Query: 240 SKQRREKEVHSLLDKLLLETIMLNPSKIGTVR----EAKKKEKPTKQGREAEMEAAVEAI 295
            KQR+E EV +LL+K+  E I L+P  +  V     E  KKE+  + G + + +A     
Sbjct: 494 RKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQGKKEQIERLGYDPQAKAP---- 549

Query: 296 KGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPAS 355
             F  K K KGR+  +   K+K++++    R  + Q L+++     K+ K       P++
Sbjct: 550 --FQPKPKQKGRSSTASLVKRKRKVMDEEHRDKVRQSLQQQHH---KEAKAKPTGARPSA 604

Query: 356 LRRF 359
           L RF
Sbjct: 605 LDRF 608

Homo sapiens (taxid: 9606)

>sp|P40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP7 PE=1 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 167/302 (55%), Gaps = 34/302 (11%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           M  NP+N V+ LGHS GTV++W P+    L+K+L  +GPV+++A   +G+ MATTG +  
Sbjct: 238 MAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRS 297

Query: 133 IKIWDLRKYEVL---QTLTGHAKTLDFSQKGLLAVGTGSFAQILGD---FSGS------- 179
           +KIWD+R ++ L   ++L      +  S  GLLA+  G    +  D    SG        
Sbjct: 298 MKIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGS 357

Query: 180 -----HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVA 234
                H  + YM + +  G ++  + F P+ED+LG+GH  G + ++VP + E N+D+   
Sbjct: 358 MGGNPHRNTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALEL 416

Query: 235 NPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVRE--------AKKKEKPT-KQGRE 285
           NPFET KQR+E+EV +LL+KL  +TI L+P+ IG+V +        AK   + T     +
Sbjct: 417 NPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQTTMDANNK 476

Query: 286 AEMEAAVEAIKGFVWKNKTKGRNKPSKK-AKKKQELIAHARRPFLDQQLKEEQSLSKKKQ 344
           A+  + +  +K  V     KG+N   +   +KK + +   R+  + +QL +E+++ K+  
Sbjct: 477 AKTNSDIPDVKPDV-----KGKNSGLRSFLRKKTQNVIDERKLRVQKQLDKEKNIRKRNH 531

Query: 345 KL 346
           ++
Sbjct: 532 QI 533

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 53  LWILPSSGRYMAVAGRRTDL--MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG 110
           LW +      M++ G  + +  +R+N    ++  G   G++ +W    + +L  ++ H+ 
Sbjct: 47  LWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKA 106

Query: 111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA---KTLDFSQKG-LLAVGT 166
            + +L FHP G  +A+  ++  IK+WD+R+   +    GH+   + L FS  G  LA   
Sbjct: 107 NICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAA 166

Query: 167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS 213
                 L D +     S + G++      +  V F P E +L  G S
Sbjct: 167 DDHTVKLWDLTAGKMMSEFPGHT----GPVNVVEFHPNEYLLASGSS 209

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 53  LWILPSSGRYMAVAGRRTDL--MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG 110
           LW +      M++ G  + +  +R+N    ++  G   G++ +W    + +L  ++ H+ 
Sbjct: 47  LWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKA 106

Query: 111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA---KTLDFSQKG-LLAVGT 166
            + +L FHP G  +A+  ++  IK+WD+R+   +    GH+   + L FS  G  LA   
Sbjct: 107 NICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAA 166

Query: 167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS 213
                 L D +     S + G++      +  V F P E +L  G S
Sbjct: 167 DDHTVKLWDLTAGKMMSEFPGHT----GPVNVVEFHPNEYLLASGSS 209

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 53   LWILPSSGRYMAVAGRRTDLMRV--NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG 110
            LW + SS     + G  + +  V  NP    ++ G S  TV +W+  +S  L     H  
Sbjct: 1184 LWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTS 1243

Query: 111  PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG-LLAVGT 166
             V+++ F+P+G ++A+   +  +++WD+   + L T  GH     ++ F+  G +LA G+
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGS 1303

Query: 167  GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG 211
            G     L + S S     + G++      +  V+F P   +L  G
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTS----WVSSVTFSPDGTMLASG 1344

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 76  NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
           +P +  ++   S  TV +W   T  LL     H   V+AL+FHP+G+ + T   +  +KI
Sbjct: 195 HPSSTCIATASSDNTVRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKI 254

Query: 136 WDLRKYEVLQTLTGH---AKTLDFSQKGLLAVGTGSFAQIL---GDFSGSHNYSRYM 186
            DL +  +L TL GH   A  + FS+ G      GS  Q++    +F  S +YSR +
Sbjct: 255 LDLLEGRLLYTLHGHQGSASCVSFSRSGDQFASAGSDQQVMVWRTNFD-SVDYSRVL 310

Danio rerio (taxid: 7955)

>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 76  NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
           +P   ++  G   G V  W+  +  LL ++  H GPV    F P+GHL A+   +C +++
Sbjct: 30  SPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRL 89

Query: 136 WDLRKYEVLQTLTGHAKTLD 155
           WD+ + + L+ L GH ++++
Sbjct: 90  WDVARAKCLRVLKGHQRSVE 109

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
359486916	610	PREDICTED: probable U3 small nucleolar R	0.830	0.488	0.743	1e-121
296090366	536	unnamed protein product [Vitis vinifera]	0.830	0.555	0.743	1e-121
224109894	537	predicted protein [Populus trichocarpa]	0.743	0.497	0.742	1e-118
356576345	535	PREDICTED: probable U3 small nucleolar R	0.805	0.540	0.731	1e-117
356535525	535	PREDICTED: probable U3 small nucleolar R	0.805	0.540	0.725	1e-117
449442126	536	PREDICTED: probable U3 small nucleolar R	0.807	0.541	0.752	1e-116
255580620	526	WD-repeat protein, putative [Ricinus com	0.743	0.507	0.745	1e-112
297829594	536	transducin family protein [Arabidopsis l	0.799	0.535	0.692	1e-108
30681364	536	transducin/WD40 domain-containing protei	0.799	0.535	0.689	1e-107
12322776	548	hypothetical protein; 61080-58687 [Arabi	0.799	0.523	0.689	1e-107

>gi|359486916|ref|XP_002269978.2| PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/300 (74%), Positives = 256/300 (85%), Gaps = 2/300 (0%)

Query: 60  GRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP 119
           G Y    GR T +M+VNPFNGVV LGHSGG VTMWKPT+SA L+KML H GP+SALAFHP
Sbjct: 306 GNYRTGLGR-TAVMQVNPFNGVVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHP 364

Query: 120 NGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGS 179
           NGHLMAT G + KIK+WDLRK+EVLQTL GHAKTLDFSQKGLLA GTGSF QILGDFSG+
Sbjct: 365 NGHLMATAGMDKKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGT 424

Query: 180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFET 239
            NYSRYMG+SM KGYQIGKV FRPYEDVL IGHSMGWS IL+P S EPNFDSWVANPFET
Sbjct: 425 ENYSRYMGHSMAKGYQIGKVLFRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFET 484

Query: 240 SKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFV 299
           SKQRREKEVHSLLDKL  ETIML+P+KIGTVR+++K+EKPTKQ R+AEMEAAVE  K   
Sbjct: 485 SKQRREKEVHSLLDKLPPETIMLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIP 544

Query: 300 WKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
            + K KG+NKPSKK KK++E +A A++PFL++Q+ EE++LS KKQK+  E+ELP SL+RF
Sbjct: 545 LRKKMKGKNKPSKKVKKREEAVARAKKPFLERQM-EEENLSTKKQKISGEIELPKSLQRF 603

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090366|emb|CBI40185.3| unnamed protein product [Vitis vinifera]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/300 (74%), Positives = 256/300 (85%), Gaps = 2/300 (0%)

Query: 60  GRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP 119
           G Y    GR T +M+VNPFNGVV LGHSGG VTMWKPT+SA L+KML H GP+SALAFHP
Sbjct: 232 GNYRTGLGR-TAVMQVNPFNGVVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHP 290

Query: 120 NGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGS 179
           NGHLMAT G + KIK+WDLRK+EVLQTL GHAKTLDFSQKGLLA GTGSF QILGDFSG+
Sbjct: 291 NGHLMATAGMDKKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGT 350

Query: 180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFET 239
            NYSRYMG+SM KGYQIGKV FRPYEDVL IGHSMGWS IL+P S EPNFDSWVANPFET
Sbjct: 351 ENYSRYMGHSMAKGYQIGKVLFRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFET 410

Query: 240 SKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFV 299
           SKQRREKEVHSLLDKL  ETIML+P+KIGTVR+++K+EKPTKQ R+AEMEAAVE  K   
Sbjct: 411 SKQRREKEVHSLLDKLPPETIMLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIP 470

Query: 300 WKNKTKGRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
            + K KG+NKPSKK KK++E +A A++PFL++Q+ EE++LS KKQK+  E+ELP SL+RF
Sbjct: 471 LRKKMKGKNKPSKKVKKREEAVARAKKPFLERQM-EEENLSTKKQKISGEIELPKSLQRF 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109894|ref|XP_002315346.1| predicted protein [Populus trichocarpa] gi|222864386|gb|EEF01517.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/291 (74%), Positives = 259/291 (89%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M+ NPFNGVV+LGHSGGTV+MWKPT++  L+KML H GP++A+AFHP+GHLMAT+G
Sbjct: 240 RTDVMQANPFNGVVALGHSGGTVSMWKPTSAVPLVKMLCHPGPITAMAFHPDGHLMATSG 299

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN 188
           KE KIKIWD+RK+EVLQT+ GHAKTLDFSQKGLLA GTGSF Q+ GDFSGS NYSR+MG+
Sbjct: 300 KEKKIKIWDVRKFEVLQTIRGHAKTLDFSQKGLLAAGTGSFVQVFGDFSGSRNYSRHMGH 359

Query: 189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEV 248
           S+VKGYQIGKV+FRPYEDVLGIGHS GWS IL+P S EPNFD+W+ANPFET+KQRREKE+
Sbjct: 360 SIVKGYQIGKVAFRPYEDVLGIGHSTGWSSILIPGSGEPNFDTWLANPFETTKQRREKEI 419

Query: 249 HSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRN 308
           HSLLDKL  ETIML+PSKIGTV+ AKKKEKPTK+  EA+MEAAVEA KG   KNKTKG+N
Sbjct: 420 HSLLDKLPPETIMLDPSKIGTVKSAKKKEKPTKKEMEADMEAAVEAAKGTAIKNKTKGKN 479

Query: 309 KPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
           KPSK A KK+E++  A++PFLDQQ+KEE+ ++KKKQK+ EE+ LP +L+RF
Sbjct: 480 KPSKIAVKKKEIVVRAKKPFLDQQMKEEEKVAKKKQKISEEISLPTALQRF 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576345|ref|XP_003556293.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/291 (73%), Positives = 249/291 (85%), Gaps = 2/291 (0%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RT++M+VNPFNGVVSLGHSGGTVTMWKPT+++ L+KML H GPVSALAFH NGHLMAT G
Sbjct: 240 RTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATAG 299

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN 188
           K+ KIK+WDLRK+EVLQTL GHA TLDFSQKGLLA G GS  Q+L D SG+ NYS+YM +
Sbjct: 300 KDKKIKLWDLRKFEVLQTLPGHATTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSKYMTH 359

Query: 189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEV 248
           SMVKGYQIGK+ FRPYEDVLGIGHSMGWS IL+P + EPNFDSWVANPFETSKQRREKE+
Sbjct: 360 SMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEI 419

Query: 249 HSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRN 308
            SLLDKL  ETIML+PSKIGTV+   ++EKPTKQ REAE+EA VEA KG   K KTKGRN
Sbjct: 420 RSLLDKLPPETIMLDPSKIGTVK--PRREKPTKQEREAEIEADVEAAKGKKLKKKTKGRN 477

Query: 309 KPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
           KP K+ +KKQE +A  +RP+L+Q+++EE+S+S+KKQK  E VELP SL+RF
Sbjct: 478 KPGKRVQKKQEAVARVKRPYLEQKIQEEESISRKKQKTREGVELPKSLQRF 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535525|ref|XP_003536295.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 248/291 (85%), Gaps = 2/291 (0%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RT++M+VNPFNGVVSLGHSGGTVTMWKPT+++ L+KML H GPVSALAFH NG LMAT G
Sbjct: 240 RTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGLLMATAG 299

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN 188
           K+ KIK+WDLRK+EVLQTL GHA TLDFSQKGLLA G GS  QIL D SG+ NYS+YM +
Sbjct: 300 KDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQILRDVSGTQNYSKYMTH 359

Query: 189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEV 248
           SMVKGYQIGK+ FRPYEDVLGIGHSMGWS IL P + EPNFDSWVANPFETSKQRREKE+
Sbjct: 360 SMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILTPGAGEPNFDSWVANPFETSKQRREKEI 419

Query: 249 HSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRN 308
            SLLDKL  ETIML+PSKIGTV+   ++E+PTKQ REAE+EA VEA KG   K KTKGRN
Sbjct: 420 RSLLDKLPPETIMLDPSKIGTVK--PRRERPTKQEREAEIEAGVEAAKGMKLKKKTKGRN 477

Query: 309 KPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
           KP K+ +KKQE ++  +RP+L+Q+++EE+S+S+KKQK  E+VELP SL+RF
Sbjct: 478 KPGKRVQKKQEAVSRVKRPYLEQKIQEEESISRKKQKTSEDVELPKSLQRF 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442126|ref|XP_004138833.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus] gi|449528879|ref|XP_004171429.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/291 (75%), Positives = 250/291 (85%), Gaps = 1/291 (0%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M+VNPFNGV++ GHSGG+V MWKPT+SA L+KML H GPVSALAFHPNGHLMAT+G
Sbjct: 240 RTDVMQVNPFNGVIATGHSGGSVAMWKPTSSAPLVKMLCHPGPVSALAFHPNGHLMATSG 299

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN 188
            E KIK+WDLRK+EVLQTL GHAKTLDFSQKGLLA GTGSF QILGDFSG+ NY+RYM +
Sbjct: 300 AERKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLAYGTGSFVQILGDFSGAQNYNRYMAH 359

Query: 189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEV 248
           SM KGYQIGK+ FRPYEDVLGIGHSMGWS IL+P S EPNFD+WVANPFETSKQRREKEV
Sbjct: 360 SMAKGYQIGKILFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEV 419

Query: 249 HSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRN 308
            SLLDKL  ETI LNP+KIGT+   KKKEK TK+ R+AE EAAV+A KG   K KTKGRN
Sbjct: 420 RSLLDKLPPETISLNPTKIGTLMAVKKKEKKTKKERDAEEEAAVDAAKGITMKKKTKGRN 479

Query: 309 KPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
           KP+K+ KKK E+I  A+RPFL +Q+KEE+ LS+KK +L EEVELP SL+RF
Sbjct: 480 KPTKREKKKHEIIEKAKRPFLHEQIKEEE-LSRKKSRLSEEVELPKSLQRF 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580620|ref|XP_002531133.1| WD-repeat protein, putative [Ricinus communis] gi|223529282|gb|EEF31253.1| WD-repeat protein, putative [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/291 (74%), Positives = 248/291 (85%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M VNPFN VV+LGH+GG VTMWKPT++A LIKML H GPV A+AFHPNGHLMAT+G
Sbjct: 229 RTDVMEVNPFNAVVALGHAGGRVTMWKPTSAAPLIKMLCHPGPVLAMAFHPNGHLMATSG 288

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN 188
            E KIKIWDLRK+EVLQT+ GHAKTLDFSQ GLLA GTGS+ QILGDFSGS +YSRYMG+
Sbjct: 289 MERKIKIWDLRKFEVLQTIPGHAKTLDFSQNGLLATGTGSYVQILGDFSGSQSYSRYMGH 348

Query: 189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEV 248
            MVKGY+I KV FRPYEDVLGIGHSMGWS IL P S EPNFDSW+ANPFETSKQRREKEV
Sbjct: 349 PMVKGYEIRKVLFRPYEDVLGIGHSMGWSSILTPGSGEPNFDSWLANPFETSKQRREKEV 408

Query: 249 HSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRN 308
            +LLDKL  ETIML+PSKIGTVR  KK++KPTKQ   AEMEAAVEA+K    KNKTKGR+
Sbjct: 409 RTLLDKLPPETIMLDPSKIGTVRPVKKRDKPTKQEIAAEMEAAVEAVKDVAVKNKTKGRS 468

Query: 309 KPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEEVELPASLRRF 359
           K S K KK++ELI   +RPFLDQQ+KEE+ L+KKKQK+ ++ ELP +L+RF
Sbjct: 469 KASNKLKKRKELIDKVKRPFLDQQMKEEEKLAKKKQKIGQDNELPVALQRF 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829594|ref|XP_002882679.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328519|gb|EFH58938.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/296 (69%), Positives = 245/296 (82%), Gaps = 9/296 (3%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M VNP+NGVV+LGHSGGTVTMWKPT+ A L++M  H GPVS++AFHPNGHLMAT+G
Sbjct: 241 RTDVMEVNPYNGVVALGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSG 300

Query: 129 KECKIKIWDLRKYEVLQTL-TGHAKTLDFSQKGLLAVGTGSFAQILGDFSG--SHNYSRY 185
           KE KIKIWDLRK+E +QT+ + HAKTL FSQKGLLA GTGSF QILGD SG  SHNYSRY
Sbjct: 301 KERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYSRY 360

Query: 186 MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRRE 245
           M +SMVKGYQI K+ FRPYEDV+GIGHSMGWS IL+P S EPNFDSWVANPFETSKQRRE
Sbjct: 361 MNHSMVKGYQIEKLMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRRE 420

Query: 246 KEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTK 305
           KEVHSLLDKL  ETIML+PSKIG +R ++++EKP++   EAE E A+EA K    KNKTK
Sbjct: 421 KEVHSLLDKLPPETIMLDPSKIGAMRPSRRREKPSRGEIEAEKEVAIEAAKSTELKNKTK 480

Query: 306 GRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEE--VELPASLRRF 359
           GRNKPSK+ KKK+E++ +A+R F +Q    E + + KK+++ E+   ELPASL+RF
Sbjct: 481 GRNKPSKRTKKKKEMVENAKRTFPEQ----EHNTALKKRRIGEDAAAELPASLKRF 532

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681364|ref|NP_187664.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|8567783|gb|AAF76355.1| hypothetical protein [Arabidopsis thaliana] gi|28393802|gb|AAO42310.1| unknown protein [Arabidopsis thaliana] gi|29824319|gb|AAP04120.1| unknown protein [Arabidopsis thaliana] gi|332641401|gb|AEE74922.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/296 (68%), Positives = 242/296 (81%), Gaps = 9/296 (3%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M VNP+N VV LGHSGGTVTMWKPT+ A L++M  H GPVS++AFHPNGHLMAT+G
Sbjct: 241 RTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSG 300

Query: 129 KECKIKIWDLRKYEVLQTL-TGHAKTLDFSQKGLLAVGTGSFAQILGDFSG--SHNYSRY 185
           KE KIKIWDLRK+E +QT+ + HAKTL FSQKGLLA GTGSF QILGD SG  SHNY+RY
Sbjct: 301 KERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRY 360

Query: 186 MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRRE 245
           M +SMVKGYQI KV FRPYEDV+GIGHSMGWS IL+P S EPNFDSWVANPFETSKQRRE
Sbjct: 361 MNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRRE 420

Query: 246 KEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTK 305
           KEVHSLLDKL  ETIML+PSKIG +R +++KEKP++   EAE E A+EA K    KNKTK
Sbjct: 421 KEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTK 480

Query: 306 GRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEE--VELPASLRRF 359
           GRNKPSK+ KKK+E++ +A+R F +Q    E + + KK+++ E+   ELP SL+RF
Sbjct: 481 GRNKPSKRTKKKKEMVENAKRTFPEQ----EHNTAIKKRRIVEDAAAELPTSLKRF 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322776|gb|AAG51373.1|AC011560_5 hypothetical protein; 61080-58687 [Arabidopsis thaliana]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/296 (68%), Positives = 242/296 (81%), Gaps = 9/296 (3%)

Query: 69  RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
           RTD+M VNP+N VV LGHSGGTVTMWKPT+ A L++M  H GPVS++AFHPNGHLMAT+G
Sbjct: 253 RTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSG 312

Query: 129 KECKIKIWDLRKYEVLQTL-TGHAKTLDFSQKGLLAVGTGSFAQILGDFSG--SHNYSRY 185
           KE KIKIWDLRK+E +QT+ + HAKTL FSQKGLLA GTGSF QILGD SG  SHNY+RY
Sbjct: 313 KERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRY 372

Query: 186 MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRRE 245
           M +SMVKGYQI KV FRPYEDV+GIGHSMGWS IL+P S EPNFDSWVANPFETSKQRRE
Sbjct: 373 MNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRRE 432

Query: 246 KEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTK 305
           KEVHSLLDKL  ETIML+PSKIG +R +++KEKP++   EAE E A+EA K    KNKTK
Sbjct: 433 KEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTK 492

Query: 306 GRNKPSKKAKKKQELIAHARRPFLDQQLKEEQSLSKKKQKLFEE--VELPASLRRF 359
           GRNKPSK+ KKK+E++ +A+R F +Q    E + + KK+++ E+   ELP SL+RF
Sbjct: 493 GRNKPSKRTKKKKEMVENAKRTFPEQ----EHNTAIKKRRIVEDAAAELPTSLKRF 544

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2075750	536	AT3G10530 "AT3G10530" [Arabido	0.805	0.539	0.676	2.6e-117
POMBASE|SPAC959.03c	520	SPAC959.03c "U3 snoRNP-associa	0.665	0.459	0.399	9.6e-44
ASPGD|ASPL0000002969	535	AN6265 [Emericella nidulans (t	0.729	0.489	0.333	4.6e-42
CGD|CAL0005357	527	orf19.4835 [Candida albicans (	0.696	0.474	0.387	5.2e-42
UNIPROTKB|Q5APD0	527	CaO19.12298 "Putative uncharac	0.696	0.474	0.387	5.2e-42
MGI|MGI:1931871	622	Wdr46 "WD repeat domain 46" [M	0.701	0.405	0.387	1.6e-40
UNIPROTKB|G4NCA1	556	MGG_01100 "Small nucleolar rib	0.713	0.460	0.361	1.6e-38
UNIPROTKB|O15213	610	WDR46 "WD repeat-containing pr	0.707	0.416	0.388	2.7e-37
FB|FBgn0030000	609	CG2260 [Drosophila melanogaste	0.693	0.408	0.373	1e-36
SGD|S000000884	554	UTP7 "Nucleolar protein" [Sacc	0.289	0.187	0.405	6e-34

TAIR|locus:2075750 AT3G10530 "AT3G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
 Identities = 199/294 (67%), Positives = 230/294 (78%)

Query:    69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG 128
             RTD+M VNP+N VV LGHSGGTVTMWKPT+ A L++M  H GPVS++AFHPNGHLMAT+G
Sbjct:   241 RTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSG 300

Query:   129 KECKIKIWDLRKYEVLQTLTG-HAKTLDFSQKGLLAVGTGSFAQILGDFSG--SHNYSRY 185
             KE KIKIWDLRK+E +QT+   HAKTL FSQKGLLA GTGSF QILGD SG  SHNY+RY
Sbjct:   301 KERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRY 360

Query:   186 MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRRE 245
             M +SMVKGYQI KV FRPYEDV+GIGHSMGWS IL+P S EPNFDSWVANPFETSKQRRE
Sbjct:   361 MNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRRE 420

Query:   246 KEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTK 305
             KEVHSLLDKL  ETIML+PSKIG +R +++KEKP++   EAE E A+EA K    KNKTK
Sbjct:   421 KEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTK 480

Query:   306 GRNKPSKKAKKKQELIAHARRPFLDXXXXXXXXXXXXXXXXXXXVELPASLRRF 359
             GRNKPSK+ KKK+E++ +A+R F +                    ELP SL+RF
Sbjct:   481 GRNKPSKRTKKKKEMVENAKRTFPEQEHNTAIKKRRIVEDAAA--ELPTSLKRF 532

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

POMBASE|SPAC959.03c SPAC959.03c "U3 snoRNP-associated protein Utp7 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 433 (157.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 99/248 (39%), Positives = 143/248 (57%)

Query:    72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
             ++  NP N V  +GH+ G VT+W P+++  L+KML H+GPV  LA + +G  M T G + 
Sbjct:   228 VLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGADS 287

Query:   132 KIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNS 189
              +K+WDLR Y+ L +      A+ L  S +GLLAVG G  A I  D   +     YM N 
Sbjct:   288 LLKVWDLRTYKELHSYYTPTPAQRLTLSDRGLLAVGWGPHATIWKDALRTKQNFPYM-NH 346

Query:   190 MVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVH 249
             ++    +  + + PYED+LGIGH+ G+  I+VP S EPN+DS+  +PF + KQR+E EV 
Sbjct:   347 LLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQETEVR 406

Query:   250 SLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRNK 309
              LL+KL  E I LN   IG V  A     P+ +  EAE E   E  + +V K K +G+N 
Sbjct:   407 QLLEKLRPEMISLNADFIGNVDRAA----PSLRKAEAEEEKPPE--EKWVPKAKARGKNS 460

Query:   310 PSKKAKKK 317
               ++  +K
Sbjct:   461 ALRRYLRK 468

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

ASPGD|ASPL0000002969 AN6265 [Emericella nidulans (taxid:162425)]

 Score = 416 (151.5 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 93/279 (33%), Positives = 153/279 (54%)

Query:    51 HILWILPSSGRYMAV----AGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML 106
             H+ +   S+G+ +A      G  T L + NP+N ++ +GH  GTVT+W P T   L+K L
Sbjct:   216 HLKYTDTSTGQLVAEIPTKVGAPTSLAQ-NPWNAIMHVGHQNGTVTLWSPNTQTPLVKAL 274

Query:   107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH--AKTLDFSQKGLLAV 164
              H+GPV ++A    G  M +TG++ K+++WD+R Y  + + + H     +  S +GL AV
Sbjct:   275 VHRGPVRSMAIDRQGRYMVSTGQDLKMQVWDIRMYREVHSYSCHQPGAAVSISDRGLTAV 334

Query:   165 GTGSFAQIL-GDF-SGSHNYSRYMGNSMV---KGYQIGKVSFRPYEDVLGIGHSMGWSGI 219
             G G+   +  G F + + +  +     M     G +I  + + PYED+LG+ H  G++ I
Sbjct:   335 GWGTQVSVWRGLFDAATADVGKVQSPYMSWGGDGQRIENLRWAPYEDILGVAHDKGFASI 394

Query:   220 LVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKP 279
             +VP + EPNFD+   NP+E  KQR+E EV +LL+KL    I L+P+ +G V     K   
Sbjct:   395 IVPGAGEPNFDALEVNPYENPKQRQEAEVRALLNKLQPGMISLDPNFVGKVDTVSDKRSR 454

Query:   280 TKQGREAEMEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQ 318
              ++  +   E  +E +K     N+ +GRN   +K  +K+
Sbjct:   455 EEKDLDRRPEDTIEKLK-----NRGRGRNSALRKYLRKK 488

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

CGD|CAL0005357 orf19.4835 [Candida albicans (taxid:5476)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 100/258 (38%), Positives = 144/258 (55%)

Query:    70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK 129
             T  M+ NP+N V  LGH  GTV+MW P     L+K+   +GP+  LA    G  MA    
Sbjct:   229 TQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLAIDREGKYMAVAAA 288

Query:   130 ECKIKIWDLRKYEVLQTLTGH--AKTLDFSQKGLLAVGTGSFAQILGDF-SGSHNYSRYM 186
             +  +KIWD+RK++ +        A +LD S  GLL+VG G    I  D   G H    YM
Sbjct:   289 DKTLKIWDIRKFKEVDNYYSQTPASSLDISDTGLLSVGWGPHVTIWKDILKGKHQSEPYM 348

Query:   187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREK 246
              N ++ G +I K  F P+ED+LG+GH  G++ I+VP S E N+D+   NP+E+ KQR+++
Sbjct:   349 -NHLIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPGSGEANYDALELNPYESVKQRQQQ 407

Query:   247 EVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVW-KNKTK 305
             EV SLLDKL  +TI L+P+ IGTV + +      K G   E+    +  K  +  K + K
Sbjct:   408 EVRSLLDKLPADTIALDPNVIGTV-DKRASTVRLKPGEITELADKTQQSKDKMEIKAEVK 466

Query:   306 GRNKPSKK--AKKKQELI 321
             G+N   ++   KK Q +I
Sbjct:   467 GKNSALRRHMRKKTQNVI 484

GO:0003674 "molecular_function" evidence=ND

GO:0030686 "90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q5APD0 CaO19.12298 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 100/258 (38%), Positives = 144/258 (55%)

Query:    70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK 129
             T  M+ NP+N V  LGH  GTV+MW P     L+K+   +GP+  LA    G  MA    
Sbjct:   229 TQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLAIDREGKYMAVAAA 288

Query:   130 ECKIKIWDLRKYEVLQTLTGH--AKTLDFSQKGLLAVGTGSFAQILGDF-SGSHNYSRYM 186
             +  +KIWD+RK++ +        A +LD S  GLL+VG G    I  D   G H    YM
Sbjct:   289 DKTLKIWDIRKFKEVDNYYSQTPASSLDISDTGLLSVGWGPHVTIWKDILKGKHQSEPYM 348

Query:   187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREK 246
              N ++ G +I K  F P+ED+LG+GH  G++ I+VP S E N+D+   NP+E+ KQR+++
Sbjct:   349 -NHLIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPGSGEANYDALELNPYESVKQRQQQ 407

Query:   247 EVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVW-KNKTK 305
             EV SLLDKL  +TI L+P+ IGTV + +      K G   E+    +  K  +  K + K
Sbjct:   408 EVRSLLDKLPADTIALDPNVIGTV-DKRASTVRLKPGEITELADKTQQSKDKMEIKAEVK 466

Query:   306 GRNKPSKK--AKKKQELI 321
             G+N   ++   KK Q +I
Sbjct:   467 GKNSALRRHMRKKTQNVI 484

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1931871 Wdr46 "WD repeat domain 46" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
 Identities = 105/271 (38%), Positives = 156/271 (57%)

Query:    66 AGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA 125
             AGR + +M  NP+N V+ LGHS GTV++W P     L K+L H+G V A+A    G  MA
Sbjct:   316 AGRLS-VMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMA 374

Query:   126 TTGKECKIKIWDLR-KYEVL--QTLTGHAKTLDFSQKGLLAVGTGSFAQIL---GDFSGS 179
             T+G + ++KI+DLR  ++ L  +TL   A  L FSQ+GLL  G G    I    G  S  
Sbjct:   375 TSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPP 434

Query:   180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFET 239
                  Y+ + +  G+  G + F P+EDVLG+GHS G++ +LVP ++EPNFD    NP+ +
Sbjct:   435 SLEQPYLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRS 492

Query:   240 SKQRREKEVHSLLDKLLLETIMLNPSKIGTVR----EAKKKEKPTKQGREAEMEAAVEAI 295
              KQR+E EV +LL+K+  E I LNP  +  V     E +KKE+  + G + + +AA +  
Sbjct:   493 RKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQKKERIERLGYDPDAKAAFQP- 551

Query:   296 KGFVWKNKTKGRNKPSKKAKKKQELIAHARR 326
                  K K KGR+  +   K+K++++    R
Sbjct:   552 -----KAKQKGRSSTASLVKRKKKVMDQEHR 577

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NCA1 MGG_01100 "Small nucleolar ribonucleoprotein complex subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 98/271 (36%), Positives = 158/271 (58%)

Query:    58 SSGRYMA-VAGRR--TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSA 114
             S+G+ ++ VA +   T  +  NP+N ++ +GH+ GTVT+W P +S  L+K+L H+GPV +
Sbjct:   245 STGQIVSEVASKLGPTQSLVQNPWNAILHMGHNNGTVTLWSPNSSDPLVKLLAHKGPVRS 304

Query:   115 LAFHPNGHLMATTGKECKIKIWDLRKY-EVLQTLTGH-AKTLDFSQKGLLAVGTGSFAQI 172
             LA    G  M +TG++ ++ +WD+R + EV    T   A ++  S  GL AVG G+   I
Sbjct:   305 LAIDREGRYMVSTGQDSRMAVWDIRMFKEVNNYFTRTPASSVAISDSGLTAVGWGTHTTI 364

Query:   173 L-GDFSGSHNYSRYMGNSMV----KGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP 227
               G F  +      + +  +    +G ++ +V + P+EDVLGIGH  G+S ILVP + E 
Sbjct:   365 WKGLFDKNAATQEKVQSPYLTWGGEGRRVERVRWCPFEDVLGIGHDGGFSSILVPGAGEA 424

Query:   228 NFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAE 287
             NFD+   NP+ET KQR+E EV SLL+KL  E I L+P+ +G +    + ++  ++  +A 
Sbjct:   425 NFDALEINPYETVKQRQESEVKSLLNKLQPEMIALDPNFVGNLDLRSEAQRRAERDLDAP 484

Query:   288 MEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQ 318
              E   + I+     N+ +G+N   KK  +KQ
Sbjct:   485 PEDIADEIR-----NRMRGKNSALKKYLRKQ 510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|O15213 WDR46 "WD repeat-containing protein 46" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 106/273 (38%), Positives = 153/273 (56%)

Query:    64 AVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL 123
             A AGR  D+M  NP+N V+ LGHS GTV++W P     L K+L H+G V A+A    G  
Sbjct:   315 ARAGR-LDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTY 373

Query:   124 MATTGKECKIKIWDLR-KYEVLQTLT-GH-AKTLDFSQKGLLAVGTGSFAQIL---GDFS 177
             MAT+G + ++KI+DLR  Y+ L T T  H A  L FSQ+GLL  G G    I    G  S
Sbjct:   374 MATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKAS 433

Query:   178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPF 237
                    Y+ + +  G   G + F P+EDVLG+GH+ G + +LVP + EPNFD   +NP+
Sbjct:   434 PPSLEQPYLTHRL-SGPVHG-LQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPY 491

Query:   238 ETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVR----EAKKKEKPTKQGREAEMEAAVE 293
              + KQR+E EV +LL+K+  E I L+P  +  V     E  KKE+  + G + + +A  +
Sbjct:   492 RSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQGKKEQIERLGYDPQAKAPFQ 551

Query:   294 AIKGFVWKNKTKGRNKPSKKAKKKQELIAHARR 326
                    K K KGR+  +   K+K++++    R
Sbjct:   552 P------KPKQKGRSSTASLVKRKRKVMDEEHR 578

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0030000 CG2260 [Drosophila melanogaster (taxid:7227)]

 Score = 398 (145.2 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 99/265 (37%), Positives = 147/265 (55%)

Query:    72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
             ++R NP NGV+ +G   G V+MW P     L K+L H   +SALA  P G  + T G + 
Sbjct:   300 MLRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQYLVTAGLDR 359

Query:   132 KIKIWDLRKYEVLQTLTGH-----AKTLDFSQKGLLAVGTGSFAQILGDF---SGSHNYS 183
              +K+WD+R     + LT       A  LD SQ+G+LA+  G++ +   D     GS + +
Sbjct:   360 AVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLETYSDLLSGGGSGDGT 419

Query:   184 R--YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSK 241
             R  Y+       +  G + F PYEDVLG+  + G+  +LVP S EPNFD+   NP+ETSK
Sbjct:   420 RLPYI-RQRCDAFVHG-LRFCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDNPYETSK 477

Query:   242 QRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWK 301
             QRRE EVH+LL+K+  E I L+P +I  V     +EK   + +   ++A    +K    +
Sbjct:   478 QRREHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAKRKLFHLKAPRINMKS---R 534

Query:   302 NKTKGRNKPSKKAKKKQELIAHARR 326
             +K KGR   +K A+ KQ ++  A+R
Sbjct:   535 HKMKGRGGTAKAARNKQ-IVKDAKR 558

GO:0022008 "neurogenesis" evidence=IMP

SGD|S000000884 UTP7 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 6.0e-34, Sum P(3) = 6.0e-34
 Identities = 43/106 (40%), Positives = 68/106 (64%)

Query:   166 TGSFAQILGDFSGS-HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS 224
             +G      G   G+ H  + YM + +  G ++  + F P+ED+LG+GH  G + ++VP +
Sbjct:   348 SGDSKPCFGSMGGNPHRNTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGA 406

Query:   225 SEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTV 270
              E N+D+   NPFET KQR+E+EV +LL+KL  +TI L+P+ IG+V
Sbjct:   407 GEANYDALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSV 452

GO:0030686 "90S preribosome" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0032040 "small-subunit processome" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.935
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•		0.922
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.917
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.902
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.898
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.897
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•		0.878
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.875
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.869
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•	•		•		0.857

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam08149	80	pfam08149, BING4CT, BING4CT (NUC141) domain	2e-38
smart01033	80	smart01033, BING4CT, BING4CT (NUC141) domain	2e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|149288 pfam08149, BING4CT, BING4CT (NUC141) domain

 Score =  131 bits (332), Expect = 2e-38
 Identities = 51/80 (63%), Positives = 58/80 (72%), Gaps = 1/80 (1%)

Query: 185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRR 244
           YM      G +I  V F P+EDVLGIGHS G+S I+VP S EPNFDS  ANPFET KQRR
Sbjct: 2   YM-THNKPGSKISSVRFCPFEDVLGIGHSGGFSSIIVPGSGEPNFDSLEANPFETKKQRR 60

Query: 245 EKEVHSLLDKLLLETIMLNP 264
           E+EV SLL+KL  ETI L+P
Sbjct: 61  EREVRSLLEKLPPETISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|198101 smart01033, BING4CT, BING4CT (NUC141) domain

 Score =  128 bits (325), Expect = 2e-37
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)

Query: 185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRR 244
           YM    + G ++  V F P+EDVLGIGH+ G+S I+VP + EPNFDS  ANPFET KQRR
Sbjct: 2   YM-THGLPGSRVESVRFCPFEDVLGIGHAGGFSSIIVPGAGEPNFDSLEANPFETRKQRR 60

Query: 245 EKEVHSLLDKLLLETIMLNP 264
           E+EV SLL+KL  E I L+P
Sbjct: 61  EREVRSLLEKLPPELISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 74  RVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKECK 132
             +P    V+     GT+ +W   T    +  L  H G V+++AF P+G  + ++  +  
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200

Query: 133 IKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAVG 165
           IK+WDL   + L TL GH     ++ FS  G L   
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 87  SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
           S GT+ +W  +T   L  +  H+  V+++AF P+G+L+A+  ++  I++WDLR  E +QT
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256

Query: 147 LTGHAK---TLDFSQKGLLAVGTGSF 169
           L+GH     +L +S  G   + +GS 
Sbjct: 257 LSGHTNSVTSLAWSPDG-KRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
           G S  T+ +W   T   +  +  H   VS++AF P+G +++++ ++  IK+WD+   + L
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128

Query: 145 QTLTGH---AKTLDFSQKGLLAVG 165
            TL GH     ++ FS  G     
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVAS 152

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 89  GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
           GT+ +W   T  LL  +  H GPV  +A   +G  +A+   +  I++WDL   E ++TLT
Sbjct: 31  GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 149 GHAK---TLDFSQKGLLAVGTGS 168
           GH     ++ FS  G +   +  
Sbjct: 91  GHTSYVSSVAFSPDGRILSSSSR 113

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           +  +P   ++S      T+ +W   T   L  +  H   V+++AF P+G  +A++ ++  
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 133 IKIWDLRKYEVLQTLTGHAK---TLDFSQKG-LLAVGTG 167
           IK+WDLR  + + TLTGH     ++ FS  G  L   + 
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK------TLDFSQKGL 161
           H G V+ +AF P+G L+AT   +  IK+WDL   E+L+TL GH                L
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-L 66

Query: 162 LAVGTGSFAQI 172
            +  +    ++
Sbjct: 67  ASGSSDKTIRL 77

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-09
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 81  VVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHPNG-HLMATTGKECKIKIWDL 138
           +++     GTV +W  +T   LI+ L  H   V++LAF P+G  L + +  +  IK+WDL
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 139 RKYEVLQTLTGHAK---TLDFSQKGLLAVGTGS 168
           R  + L TL GH     +L FS  G L + +GS
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 13/160 (8%)

Query: 75  VNPFNGVVSLGHSGGTVTMWK-PTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKI 133
            +P   +++ G S GT+ +W   ++S+LL  +  H   V ++AF P+G L+A+   +  +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 134 KIWDLRKYEVLQTLT--GHA---KTLDFSQKGLLAVGTGSFAQILG--DFSGSHNYSRYM 186
           ++WDL   ++L +LT  GH     +L FS  G L V  GS    +   D           
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE 226
           G+S V       VSF P   V+  G + G   +    +  
Sbjct: 369 GHSNVLS-----VSFSPDGRVVSSGSTDGTVRLWDLSTGS 403

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 12/30 (40%), Positives = 23/30 (76%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWD 137
           H GPV+++AF P+G+L+A+   +  +++WD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWD 137
           H GPV+++AF P+G  +A+   +  IK+WD
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKEC 131
           +  +P   +++ G   GT+ +W    +   ++ L  H   V++LA+ P+G  +A+   + 
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWD-LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 132 KIKIWD 137
            I+IWD
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 73  MRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
           +  +P  G++    S  GT+ +W  +T  LL   L         +F P+G L+A+   + 
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 132 KIKIWDLR-KYEVLQTLTGHAK---TLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMG 187
            I++WDLR    +L+TL+GH+    ++ FS  G L   +GS    +  +           
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLETGKLLSSL 322

Query: 188 NSMVKGYQIGKVSFRPYEDVLGIGHS 213
                   +  +SF P   +L  G S
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGS 348

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 81  VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKECKIKIWDLR 139
           + S     GT+ +W   T   L  +  H  PVS+LAF P+G L+  +   +  I++WDL 
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229

Query: 140 KYEVLQ-TLTGHAKTL--DFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
             ++L+ TL+GH+ ++   FS  G  L +  +    ++    S S       G+S     
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS----S 285

Query: 195 QIGKVSFRPYEDVL 208
            +  V+F P   +L
Sbjct: 286 SVLSVAFSPDGKLL 299

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 81  VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
           +VS G   GT+ +W   T    +K L     V +++F P+G ++++   +  +++WDL  
Sbjct: 343 LVSGGSDDGTIRLWDLRTG-KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 141 YEVLQTLTGHAK---TLDFSQKGLLAVGTGSFAQI-LGDFSGSHNYSRYMGNSMV 191
             +L+ L GH     +LDFS  G       S   I L D   S     +  +  V
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           +  +P   VVS G + GTV +W  +T +LL  +  H   V++L F P+G  +A+   +  
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 133 IKIWDLRKYE 142
           I++WDL+   
Sbjct: 436 IRLWDLKTSL 445

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.92
KOG0266	456	consensus WD40 repeat-containing protein [General	99.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.89
KOG0645	312	consensus WD40 repeat protein [General function pr	99.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.89
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
PLN00181	793	protein SPA1-RELATED; Provisional	99.88
PTZ00421	493	coronin; Provisional	99.88
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.87
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.87
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.87
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.87
PTZ00420	568	coronin; Provisional	99.87
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.87
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.86
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.86
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0296	399	consensus Angio-associated migratory cell protein	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.84
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0646	476	consensus WD40 repeat protein [General function pr	99.84
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.84
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.83
KOG0643	327	consensus Translation initiation factor 3, subunit	99.82
PF08149	80	BING4CT: BING4CT (NUC141) domain; InterPro: IPR012	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.82
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG0296	399	consensus Angio-associated migratory cell protein	99.81
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
KOG0289	506	consensus mRNA splicing factor [General function p	99.81
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.81
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.79
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.79
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.79
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.79
KOG0643	327	consensus Translation initiation factor 3, subunit	99.78
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.78
KOG0267	825	consensus Microtubule severing protein katanin p80	99.77
KOG0646	476	consensus WD40 repeat protein [General function pr	99.77
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.77
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.76
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.76
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.75
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG2096	420	consensus WD40 repeat protein [General function pr	99.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.75
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.73
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.73
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.73
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.72
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.72
KOG2055	514	consensus WD40 repeat protein [General function pr	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.71
KOG0641	350	consensus WD40 repeat protein [General function pr	99.71
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.7
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.7
KOG2055	514	consensus WD40 repeat protein [General function pr	99.69
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.69
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.69
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.68
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.68
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.68
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.68
KOG1274	933	consensus WD40 repeat protein [General function pr	99.68
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.67
KOG0267	825	consensus Microtubule severing protein katanin p80	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1539	910	consensus WD repeat protein [General function pred	99.66
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.65
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.64
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG1273	405	consensus WD40 repeat protein [General function pr	99.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.64
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.63
KOG2096	420	consensus WD40 repeat protein [General function pr	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.62
KOG2048	691	consensus WD40 repeat protein [General function pr	99.62
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG4328	498	consensus WD40 protein [Function unknown]	99.61
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.61
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.61
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.6
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.6
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG1188	376	consensus WD40 repeat protein [General function pr	99.6
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.6
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.6
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.59
KOG1539	910	consensus WD repeat protein [General function pred	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.57
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.55
KOG4328	498	consensus WD40 protein [Function unknown]	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.53
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.52
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.52
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.47
PRK01742	429	tolB translocation protein TolB; Provisional	99.46
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.46
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.45
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.45
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.44
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.44
KOG4227	609	consensus WD40 repeat protein [General function pr	99.42
KOG2139	445	consensus WD40 repeat protein [General function pr	99.42
PRK11028	330	6-phosphogluconolactonase; Provisional	99.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.41
KOG1188	376	consensus WD40 repeat protein [General function pr	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.39
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.39
KOG1310	758	consensus WD40 repeat protein [General function pr	99.38
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
COG2319	466	FOG: WD40 repeat [General function prediction only	99.36
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.35
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.34
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.34
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.33
PRK05137	435	tolB translocation protein TolB; Provisional	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.32
KOG4227	609	consensus WD40 repeat protein [General function pr	99.32
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.3
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.3
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.28
PRK01742	429	tolB translocation protein TolB; Provisional	99.24
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.24
KOG1963	792	consensus WD40 repeat protein [General function pr	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.23
KOG1310	758	consensus WD40 repeat protein [General function pr	99.22
COG2319	466	FOG: WD40 repeat [General function prediction only	99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.19
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.19
PRK03629	429	tolB translocation protein TolB; Provisional	99.17
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.16
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.15
PRK04922	433	tolB translocation protein TolB; Provisional	99.14
KOG2321	703	consensus WD40 repeat protein [General function pr	99.14
PRK05137	435	tolB translocation protein TolB; Provisional	99.14
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.14
KOG1963	792	consensus WD40 repeat protein [General function pr	99.14
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.14
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
PRK01029	428	tolB translocation protein TolB; Provisional	99.12
KOG2315	566	consensus Predicted translation initiation factor	99.11
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.07
KOG2314	698	consensus Translation initiation factor 3, subunit	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.04
PRK00178	430	tolB translocation protein TolB; Provisional	99.03
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.95
PRK01029	428	tolB translocation protein TolB; Provisional	98.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.93
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.93
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.9
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.88
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.88
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.87
KOG2315	566	consensus Predicted translation initiation factor	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
KOG4547	541	consensus WD40 repeat-containing protein [General	98.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
COG4946	668	Uncharacterized protein related to the periplasmic	98.74
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
KOG2314	698	consensus Translation initiation factor 3, subunit	98.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.69
KOG1334	559	consensus WD40 repeat protein [General function pr	98.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.64
PRK04043	419	tolB translocation protein TolB; Provisional	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.62
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.61
KOG4547	541	consensus WD40 repeat-containing protein [General	98.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.57
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.55
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.55
KOG1334	559	consensus WD40 repeat protein [General function pr	98.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.53
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.49
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.44
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.39
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.39
COG4946	668	Uncharacterized protein related to the periplasmic	98.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.33
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.3
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.28
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.28
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.25
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.2
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.16
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.04
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.01
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.97
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.95
PRK02888	635	nitrous-oxide reductase; Validated	97.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.76
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.72
PRK13616	591	lipoprotein LpqB; Provisional	97.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.68
PRK13616	591	lipoprotein LpqB; Provisional	97.68
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.64
PRK02888	635	nitrous-oxide reductase; Validated	97.62
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.6
KOG3621	726	consensus WD40 repeat-containing protein [General	97.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.54
COG3391	381	Uncharacterized conserved protein [Function unknow	97.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.52
KOG2395	644	consensus Protein involved in vacuole import and d	97.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.14
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.08
COG3391	381	Uncharacterized conserved protein [Function unknow	97.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.01
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.94
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.92
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.7
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.51
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.36
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.33
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.21
PRK13684	334	Ycf48-like protein; Provisional	96.21
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.2
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.87
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.79
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.72
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.7
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.64
PRK10115	686	protease 2; Provisional	95.61
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.42
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.37
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.36
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.35
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.32
KOG2395	644	consensus Protein involved in vacuole import and d	95.3
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.27
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.24
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.0
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.95
COG5167	776	VID27 Protein involved in vacuole import and degra	94.93
PHA02713	557	hypothetical protein; Provisional	94.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.84
KOG2444	238	consensus WD40 repeat protein [General function pr	94.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.67
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.6
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.59
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.48
PRK13684	334	Ycf48-like protein; Provisional	94.42
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.34
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.28
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.98
KOG2444	238	consensus WD40 repeat protein [General function pr	93.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.55
PRK10115	686	protease 2; Provisional	93.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.19
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.04
PHA03098	534	kelch-like protein; Provisional	93.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.18
PHA02713	557	hypothetical protein; Provisional	92.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.98
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.85
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.57
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.55
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.33
PHA02790	480	Kelch-like protein; Provisional	91.12
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.89
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.0
PRK13615	557	lipoprotein LpqB; Provisional	89.62
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.96
COG5167	776	VID27 Protein involved in vacuole import and degra	88.86
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.83
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.5
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.36
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.34
PHA02790	480	Kelch-like protein; Provisional	88.23
PHA03098	534	kelch-like protein; Provisional	88.06
KOG2247	615	consensus WD40 repeat-containing protein [General	88.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.03
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.98
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.98
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.62
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.38
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.17
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	87.11
PRK13615	557	lipoprotein LpqB; Provisional	86.47
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.38
PRK13614	573	lipoprotein LpqB; Provisional	86.34
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.22
PRK13614	573	lipoprotein LpqB; Provisional	85.0
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.63
KOG2247	615	consensus WD40 repeat-containing protein [General	84.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.04
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	83.65
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.29
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.09
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.96
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.96
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	82.29
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.06
COG5276	370	Uncharacterized conserved protein [Function unknow	81.57
PRK13613	599	lipoprotein LpqB; Provisional	81.55
COG4590	733	ABC-type uncharacterized transport system, permeas	80.34

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-55  Score=384.04  Aligned_cols=345  Identities=43%  Similarity=0.674  Sum_probs=294.8

Q ss_pred             HHHHh-hhcCCc-----ccchhhhcccchhHHHHHHHHHHHhHhhhhccc------------------------------
Q 040274            8 TKVKK-YLRGED-----FKRQKLKGQLPLREELYGKSAKAAAKVEKNLVH------------------------------   51 (359)
Q Consensus         8 ~~~~k-~~r~~~-----~~~~~lr~~~~~~~~~~~~a~~~~~~~e~ll~~------------------------------   51 (359)
                      .+.++ |.||+.     .++|++|.+++..+..|..+..+++++|+|+++                              
T Consensus        40 ~k~~r~y~r~~k~n~~~~k~K~~r~~lk~~e~~~e~a~~~aAk~e~Ll~e~~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa  119 (545)
T KOG1272|consen   40 NKFERIYSRGEKLNPKKMKDKKLREQLKVIEKIYEEAHEAAAKTEILLPETAGYLEAEGLEKTYKVRQDDIAENVDIASA  119 (545)
T ss_pred             hhhcccccccccCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhhceeccccCCcccccCCcceeeeEHhhhhhhccHHhH
Confidence            44444 888988     899999999999999999999999999999988                              


Q ss_pred             -------------eEEEECCCCCEEEEecc--------------------------------------------------
Q 040274           52 -------------ILWILPSSGRYMAVAGR--------------------------------------------------   68 (359)
Q Consensus        52 -------------~~l~~spdg~~l~~~~~--------------------------------------------------   68 (359)
                                   |.+.++.+|++|+.||+                                                  
T Consensus       120 ~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~  199 (545)
T KOG1272|consen  120 TKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN  199 (545)
T ss_pred             HhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC
Confidence                         78888999999999998                                                  


Q ss_pred             -----------------------------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           69 -----------------------------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        69 -----------------------------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                                                                           .+..|+.+|.+..+.+|+.+|+|.+|.
T Consensus       200 GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  200 GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence                                                                 788999999999999999999999999


Q ss_pred             CCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEcCCcEEEE
Q 040274           96 PTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQIL  173 (359)
Q Consensus        96 ~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~  173 (359)
                      +.+.+++..+.+|.++|.+++++++|+|++|+|.|..|+|||+++...++++  +-++..+++|..|+++++.+..|.||
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw  359 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIW  359 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeee
Confidence            9999999999999999999999999999999999999999999998877777  45678999999999999999999999


Q ss_pred             cCCCC--CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeeccCCCCChhhhhhHHHHHh
Q 040274          174 GDFSG--SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSL  251 (359)
Q Consensus       174 d~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~~~~~~~~~~~~e~ev~~l  251 (359)
                      .....  +....+|+.|..  +..|..+.|+|..++|.+|+..|+.+|++||+||+|++.|+.|||++.+||+|.||++|
T Consensus       360 ~d~~~~s~~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~L  437 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSL  437 (545)
T ss_pred             hhhhcCCCCCCcchhhhcc--CcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHHhHHHHHHH
Confidence            75433  355678888875  44899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCeeeeCCCCcccccccccccCCchhhhhhHHHHHHHhhcccccccccCCCCchhhhHHhhhhhHhhccchhHHH
Q 040274          252 LDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAAVEAIKGFVWKNKTKGRNKPSKKAKKKQELIAHARRPFLDQ  331 (359)
Q Consensus       252 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~g~~~~~~~~~~k~~~~~~~~~~~~~~  331 (359)
                      |+++||++|++||+.|+.++....+..+.+.+.   .-...+.+.....+.|++||++..+  .++++||+++.|.++++
T Consensus       438 LeKippElIsLdp~~i~~vd~~~~~~~k~e~~~---~~~~~~~~~~~~pr~K~Kgr~s~~k--~k~~knvvd~~r~~ve~  512 (545)
T KOG1272|consen  438 LEKIPPELISLDPRVIGIVDEPSLEEKKDEIER---LFEEKPPEAGALPRHKTKGRNSGAK--RKKKKNVVDDARLFVEQ  512 (545)
T ss_pred             HhhCChHhEEechhhccccCcccchhhHHHHHH---HhcccCcccccCchhhhccCCchHH--HHHHHHHHHHHHHHHHH
Confidence            999999999999999999998776665322221   1123333445567888999999888  33345777887999999


Q ss_pred             HHHHHHHHHHh--hhcc-ccccccccccCCC
Q 040274          332 QLKEEQSLSKK--KQKL-FEEVELPASLRRF  359 (359)
Q Consensus       332 ~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~  359 (359)
                      .+++++++..-  +.+. .+..+.+.|||||
T Consensus       513 ~le~~k~~q~~~~~~~~~~ea~k~~~aLdRf  543 (545)
T KOG1272|consen  513 SLEKEKRKQAVKKEQGVKDEAAKKPSALDRF  543 (545)
T ss_pred             HHHHHHHHHHHHHhhcCCcccccchhHHHhh
Confidence            98766644431  1221 2344559999999

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=221.71  Aligned_cols=165  Identities=18%  Similarity=0.261  Sum_probs=152.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      -.++|+|+|++|++++.                       .|.+++|+|||.+++||+.|..-+|||++++.++..+.+|
T Consensus       265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH  344 (459)
T KOG0272|consen  265 SRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH  344 (459)
T ss_pred             eeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccc
Confidence            78999999999999987                       8999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCC-C--cEEEEcCCcEEEEcCCCCCccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQK-G--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~-g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      ..+|.+++|+|+|..|||||.|++++|||++.-..++++++|   |+.+.|+|. |  ++++++|+++.||. ..+..+.
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs-~~~~~~~  423 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS-TRTWSPL  423 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeec-CCCcccc
Confidence            999999999999999999999999999999998889999766   799999994 4  88999999999998 4555777


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..+.+|..    .|.++.++|++.++++++.|.++.+|.
T Consensus       424 ksLaGHe~----kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  424 KSLAGHEG----KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhhcCCcc----ceEEEEeccCCceEEEeccCceeeecc
Confidence            88888866    899999999999999999998777774

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-29  Score=219.87  Aligned_cols=151  Identities=22%  Similarity=0.293  Sum_probs=133.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|..++|||+|.+|+|++.|.+-++||+.++..+....||...|.+++|+|||.+++|||.|..-+|||+|+|.++..+.
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~  342 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA  342 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec
Confidence            78888888888888888888888888888888777778999999999999999999999999999999999999999996


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~  222 (359)
                      +|   |.+++|||+|  +++||.|++++|||++.. .....++.|..    -|+.++|+| .|.+|++++.|+.+.||.+
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~n----lVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSN----LVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccc----hhhheEecccCCeEEEEcccCcceeeecC
Confidence            65   7999999999  888999999999997655 45667777754    899999999 7899999999998888754


Q ss_pred             CC
Q 040274          223 RS  224 (359)
Q Consensus       223 gs  224 (359)
                      -+
T Consensus       418 ~~  419 (459)
T KOG0272|consen  418 RT  419 (459)
T ss_pred             CC
Confidence            43

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=213.36  Aligned_cols=180  Identities=18%  Similarity=0.345  Sum_probs=154.7

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-EEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL-IKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~-~~~~~  107 (359)
                      .|+.|+|+|.+|++|+.                       .|.|++|+|||..|++|+.||+|++||+.+++++ ..|.+
T Consensus       119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g  198 (480)
T KOG0271|consen  119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG  198 (480)
T ss_pred             EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence            89999999999999987                       7999999999999999999999999999998765 45889


Q ss_pred             CCCCeEEEEEec-----CCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 040274          108 HQGPVSALAFHP-----NGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDFSQKG-LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       108 h~~~v~~l~~~p-----~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~  178 (359)
                      |...|++++|.|     ..++|++++.||+|+|||+..+.++..+.+   +|+|+.|..+| +++++.|++|++|+...+
T Consensus       199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccch
Confidence            999999999987     677999999999999999999999888855   48999999999 888999999999985432


Q ss_pred             --------------------------------C----------------------------------------------c
Q 040274          179 --------------------------------S----------------------------------------------H  180 (359)
Q Consensus       179 --------------------------------~----------------------------------------------~  180 (359)
                                                      +                                              +
T Consensus       279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence                                            0                                              0


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------------EEcCCCCCcee
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------------LVPRSSEPNFD  230 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------------~~~gs~~~~~~  230 (359)
                      ++....+    |..-|+.+.||||++++++++.|..+.+                              +++|+-|.+++
T Consensus       359 pi~rmtg----Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  359 PITRMTG----HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK  434 (480)
T ss_pred             chhhhhc----hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence            0011122    3347999999999999999999998776                              68889999999


Q ss_pred             eeccC
Q 040274          231 SWVAN  235 (359)
Q Consensus       231 ~~~~~  235 (359)
                      +|++.
T Consensus       435 vw~V~  439 (480)
T KOG0271|consen  435 VWDVR  439 (480)
T ss_pred             EEEee
Confidence            99874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=3.2e-27  Score=197.99  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=131.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+.|+.|-+ ...|+|||.|.+..+||+.+++.+..|.+|.+.|.+++++| +++.|++|+-|...++||+|.+.++++|
T Consensus       147 ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  147 YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             eeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            577788876 44777888889999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          148 TGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       148 ~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .+|   |+++.|.|+|  +++++.|+++++||++.. ..+..|... . ...+|++++||-.|++|.+|..|..+.+|.+
T Consensus       226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~-~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHD-S-IICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             cccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccC-c-ccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            655   8999999999  889999999999998765 444444432 2 3447999999999999999999998888654


Q ss_pred             CCC
Q 040274          223 RSS  225 (359)
Q Consensus       223 gs~  225 (359)
                      -.+
T Consensus       303 lk~  305 (343)
T KOG0286|consen  303 LKG  305 (343)
T ss_pred             ccc
Confidence            433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=2.4e-27  Score=221.97  Aligned_cols=166  Identities=19%  Similarity=0.263  Sum_probs=153.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      |...|+|+.++|++|+.                       +|+++.|+|.|-+|+||+.|++-++|......+++.|.+|
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            99999999999999987                       8999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      -+.|.|+.|+|+.+|++|||.|.+|++||+.+|..++.|.|   +|.+++|||+|  +++++.|+.|.+||+..+ ..+.
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~  613 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-SLVK  613 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-cchh
Confidence            99999999999999999999999999999999999999954   58999999999  778888999999996654 6777


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .+.+|.+    .|.++.||.+|.+|++|+.|..+++|..
T Consensus       614 ~l~~Ht~----ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  614 QLKGHTG----TIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             hhhcccC----ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            8888865    8999999999999999999988888743

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=2.5e-27  Score=221.86  Aligned_cols=162  Identities=17%  Similarity=0.314  Sum_probs=149.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      +|..+.|+|+.++|+++|.|++|++|.+.+..++..+.+|..||+.+.|+|-|-||||+|.|++.++|......+++.+.
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988998886


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE----
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI----  219 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i----  219 (359)
                      +|   |.|+.|+|+.  ++++|.|.+|++||+.++ ..+..+.+|..    +|.+++|||+|++|++|+.||.+.+    
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~----~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKG----PVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCC----ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            65   7899999999  777888999999997665 67888888865    9999999999999999999999877    


Q ss_pred             --------------------------EEcCCCCCceeeeccC
Q 040274          220 --------------------------LVPRSSEPNFDSWVAN  235 (359)
Q Consensus       220 --------------------------~~~gs~~~~~~~~~~~  235 (359)
                                                +++|++|+++++|+..
T Consensus       608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence                                      5778889999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-25  Score=185.01  Aligned_cols=169  Identities=19%  Similarity=0.218  Sum_probs=145.9

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|+||.+.|++|++                        .|+|++|+|.  +.+|++++.|++|++||+++.+....+
T Consensus       109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~  188 (315)
T KOG0279|consen  109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF  188 (315)
T ss_pred             EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence            89999999999999998                        6999999996  789999999999999999999999999


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccc
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      .+|++.++.++++|||.++++|+.||.+.+||++.++.+.++  ...|.+++|+|+- .++...+..|.|||+... ..+
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~-~~v  267 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK-AVV  267 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch-hhh
Confidence            999999999999999999999999999999999999999998  4568999999999 777888888999997554 333


Q ss_pred             ccccc-ccC----CCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          183 SRYMG-NSM----VKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       183 ~~~~~-~~~----~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..+.- ..+    .......+++|++||..|+.|..|+.+++|-
T Consensus       268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            32211 111    0233577899999999999999999887774

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.94  E-value=3.2e-25  Score=196.67  Aligned_cols=167  Identities=22%  Similarity=0.333  Sum_probs=146.7

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---------  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---------  100 (359)
                      .+|+|+.+|..||+|..                      +|.++.|+..|.+|++++.|+++.|||..+++         
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s  318 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS  318 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc
Confidence            99999999999999987                      99999999999999999999999999974332         


Q ss_pred             --------------------------------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274          101 --------------------------------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus       101 --------------------------------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                                                      |+.++.+|.++|+++.|+|.|.+|+|++.|++++||.+....+.+.+ 
T Consensus       319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence                                            55677899999999999999999999999999999998877666666 


Q ss_pred             --cCCceeEEEcCCC-----------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          148 --TGHAKTLDFSQKG-----------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       148 --~~~v~~~~~s~~g-----------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                        ...|..+.|+|+|           +++++.|++|.+||+..+ .++..++.|..    +|++++|+|+|++|++|+.|
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~----pVysvafS~~g~ylAsGs~d  473 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQE----PVYSVAFSPNGRYLASGSLD  473 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCC----ceEEEEecCCCcEEEecCCC
Confidence              4457889999865           688999999999996554 67777877765    99999999999999999999


Q ss_pred             CeEEEEEcC
Q 040274          215 GWSGILVPR  223 (359)
Q Consensus       215 g~~~i~~~g  223 (359)
                      |.+.||..-
T Consensus       474 g~V~iws~~  482 (524)
T KOG0273|consen  474 GCVHIWSTK  482 (524)
T ss_pred             CeeEecccc
Confidence            999998543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=2e-25  Score=194.75  Aligned_cols=178  Identities=21%  Similarity=0.354  Sum_probs=155.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec-
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-  107 (359)
                      +.+.|+|+|+.|++|+.                       .|.+|.|++++.++++|+.+|.|.+|+++... +..+.+ 
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ah  178 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAH  178 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHh
Confidence            89999999999999987                       89999999999999999999999999998654 444444 


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      |...|++++|+|+...|+||+.||+|+|||....+.-..+.+|   |.+++|+|.-  ++++|.|+.|.+||.+++ ..+
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-~cl  257 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-SCL  257 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-chh
Confidence            5599999999999999999999999999999988776666655   8999999986  777888999999996655 677


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE-------------------------------EEcCCCCCceee
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI-------------------------------LVPRSSEPNFDS  231 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i-------------------------------~~~gs~~~~~~~  231 (359)
                      .++..|..    .|..+.|+|++++|++++.|..+.+                               +.+|+.|+.+..
T Consensus       258 ~tlh~HKn----tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  258 ATLHGHKN----TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             hhhhhccc----eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            77777754    8999999999999999999998765                               678888999988


Q ss_pred             eccC
Q 040274          232 WVAN  235 (359)
Q Consensus       232 ~~~~  235 (359)
                      |.+.
T Consensus       334 ~~v~  337 (464)
T KOG0284|consen  334 WVVG  337 (464)
T ss_pred             Eecc
Confidence            8765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=4.9e-24  Score=177.88  Aligned_cols=147  Identities=14%  Similarity=0.198  Sum_probs=130.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .|+.+..+++|+++++++.|+++++||+.++++...|.+|...|.+++|+||.+.+++|+.|.+|++||+-. .+..++ 
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~  143 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIH  143 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999874 454554 


Q ss_pred             ----cCCceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          148 ----TGHAKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       148 ----~~~v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                          .+.|+|+.|+|+.    +++++.|++|++||+.+- +....+.+|.+    .++.+.+||||..+++|+.||.+.+
T Consensus       144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~----~v~t~~vSpDGslcasGgkdg~~~L  218 (315)
T KOG0279|consen  144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSG----YVNTVTVSPDGSLCASGGKDGEAML  218 (315)
T ss_pred             cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccc----cEEEEEECCCCCEEecCCCCceEEE
Confidence                3458999999984    889999999999996544 56667777755    7999999999999999999998777


Q ss_pred             EE
Q 040274          220 LV  221 (359)
Q Consensus       220 ~~  221 (359)
                      |.
T Consensus       219 wd  220 (315)
T KOG0279|consen  219 WD  220 (315)
T ss_pred             EE
Confidence            43

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=4.2e-25  Score=192.75  Aligned_cols=163  Identities=19%  Similarity=0.292  Sum_probs=140.0

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++.|+++|.++++|..                       .|.+++|+|....|++++.||+|+|||....+....+.+|
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH  221 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH  221 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC
Confidence            89999999999999877                       8999999998889999999999999999998888889999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      .-.|.+++|+|.-.+++++|.|..|++||.+++.++.++   ...|..+.|+|++  |+++|.|..+.+||++.. +.+.
T Consensus       222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~  300 (464)
T KOG0284|consen  222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELF  300 (464)
T ss_pred             CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHH
Confidence            999999999999999999999999999999999998888   4458999999999  889999999999997733 4455


Q ss_pred             ccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGI  219 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i  219 (359)
                      .+.+|..    .|+++.|+| ...+|.+|+.||.+..
T Consensus       301 ~~r~Hkk----dv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  301 TYRGHKK----DVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             Hhhcchh----hheeeccccccccceeeccCCCceEE
Confidence            5555543    567777777 3456666666665443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=202.76  Aligned_cols=170  Identities=21%  Similarity=0.293  Sum_probs=148.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKP-TTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~-~~~~~~~~~  105 (359)
                      .++.|+|||++|++++.                         .|++++|+|++.++++|+.|++|++||+ ..+..+.++
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l  242 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL  242 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence            88999999999988755                         7999999999999999999999999999 555888999


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCc
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~  180 (359)
                      .+|...|++++|+|+|+++++|+.|++|+|||+++++++..+.   +.|++++|+++|  +++++.|+.|+|||+..+..
T Consensus       243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence            9999999999999999999999999999999999999988884   458999999999  77788899999999766532


Q ss_pred             -cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          181 -NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       181 -~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                       ....+..+.. .. +++++.|+|++.+|++++.|+.+.+|...
T Consensus       323 ~~~~~~~~~~~-~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  323 LCLKLLSGAEN-SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             eeeecccCCCC-CC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence             2344455533 33 69999999999999999999988886544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=180.46  Aligned_cols=147  Identities=16%  Similarity=0.269  Sum_probs=133.4

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|.+++++| +++.+++|+.|.+.+|||++.+.+.++|.+|.+.|+++.|.|+|.-|+||+.|+++++||+|..+.+..|
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY  267 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence            899999999 8999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             c-----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          148 T-----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       148 ~-----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .     .+|++++||-.|  |+++..|.++.+||...+ +....+.+|..    .|+|+..+|||..+++|+.|.+++||
T Consensus       268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~GHeN----RvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLAGHEN----RVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             ccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEeeccCC----eeEEEEECCCCcEEEecchhHheeec
Confidence            3     458999999999  667777899999996554 56666677754    99999999999999999999888877

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=173.26  Aligned_cols=166  Identities=16%  Similarity=0.252  Sum_probs=142.0

Q ss_pred             eEEEECCC-CCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cc
Q 040274           52 ILWILPSS-GRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS--AL  101 (359)
Q Consensus        52 ~~l~~spd-g~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~--~~  101 (359)
                      +.++|+|- |..|++||.                           .|.+++|+|.|++|++||.|.++.||.-..+  ++
T Consensus        18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec   97 (312)
T KOG0645|consen   18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC   97 (312)
T ss_pred             EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE
Confidence            89999998 999999987                           7899999999999999999999999986644  67


Q ss_pred             eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC---CeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          102 LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK---YEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       102 ~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                      +.++.||...|-|++|+++|+|||||+.|..|.||.+..   .+++..+..|   |..+.|+|..  |+++++|++|++|
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~  177 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVY  177 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEE
Confidence            888999999999999999999999999999999999874   3455666544   7889999976  8899999999999


Q ss_pred             cCCCC--CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          174 GDFSG--SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       174 d~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .....  -.....+.+|..    .|.+++|+|.|..|++++.|+.++||.
T Consensus       178 ~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  178 RDEDDDDWECVQTLDGHEN----TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             eecCCCCeeEEEEecCccc----eEEEEEecCCCceEEEecCCcceEeee
Confidence            84422  123445555543    899999999999999999999988854

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.92  E-value=6.1e-24  Score=174.66  Aligned_cols=166  Identities=17%  Similarity=0.232  Sum_probs=139.9

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ..|.++||+++||.++.                        .|+++.|..+|.++++|+.||+++|||++...+...+ .
T Consensus        44 NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~  122 (311)
T KOG0315|consen   44 NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-Q  122 (311)
T ss_pred             eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-c
Confidence            78899999999999887                        7999999999999999999999999999986655555 6


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCc-
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSH-  180 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~-  180 (359)
                      |..+|+++..+|+...|++|..+|.|++||+....+...+    ...+.++...|||  ++++...|++++|++..... 
T Consensus       123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA  202 (311)
T ss_pred             CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence            7799999999999999999999999999999988776666    3468999999999  55555679999999765321 


Q ss_pred             ----cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          181 ----NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       181 ----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                          ++..+..|.    ..+..+.+|||+.+|++++.|..+.||.+
T Consensus       203 s~l~P~~k~~ah~----~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  203 SELEPVHKFQAHN----GHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             ccceEhhheeccc----ceEEEEEECCCCcEEEeecCCceEEEEec
Confidence                223344443    37999999999999999999999888543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3e-25  Score=191.08  Aligned_cols=186  Identities=18%  Similarity=0.246  Sum_probs=144.1

Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEE
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVG  165 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~  165 (359)
                      |.|||.....|+..+......|.++.|+|.. ..|++|+.|+.|.+||++++.+++.+  ....+.|+|+|.+  +++++
T Consensus       169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~  248 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN  248 (433)
T ss_pred             eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecc
Confidence            3444444445666666667788999999954 46788889999999999999998877  5567899999977  88888


Q ss_pred             cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE--------------------------
Q 040274          166 TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI--------------------------  219 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i--------------------------  219 (359)
                      .|..++.||++....++..+.+|..    .|.++.|||.|+-+++|+.|..|+|                          
T Consensus       249 ED~nlY~~DmR~l~~p~~v~~dhvs----AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S  324 (433)
T KOG0268|consen  249 EDHNLYTYDMRNLSRPLNVHKDHVS----AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS  324 (433)
T ss_pred             ccccceehhhhhhcccchhhcccce----eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence            9999999999887777777777644    8999999999999999999999988                          


Q ss_pred             -----EEcCCCCCceeeeccCCCCC--hhhhhhHHHHHhhhccCCCeeeeCCCCcccccccccccCCchh
Q 040274          220 -----LVPRSSEPNFDSWVANPFET--SKQRREKEVHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQ  282 (359)
Q Consensus       220 -----~~~gs~~~~~~~~~~~~~~~--~~~~~e~ev~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                           +++||+|+|+++|.++..+.  ....+|.....+.+++...  +-+-.+|.+|.++...++.-..
T Consensus       325 ~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~--y~~~peIkRIarHR~lPk~i~~  392 (433)
T KOG0268|consen  325 MDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKER--YKHLPEIKRIARHRHLPKPIKK  392 (433)
T ss_pred             ccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHH--HhhcHHHHHHHhhccCCHHHHH
Confidence                 68999999999999987654  4455565555555555444  2344567778776655544333

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=1.3e-23  Score=195.88  Aligned_cols=167  Identities=19%  Similarity=0.325  Sum_probs=148.7

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ..+.|+..|..||.|+.                        .++|++++|||++|+||+.||.|+|||..++-|..+|..
T Consensus       311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte  390 (893)
T KOG0291|consen  311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE  390 (893)
T ss_pred             eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc
Confidence            56677788999999887                        899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CC--ceeEEEcCCC-cEE-EEcCC-cEEEEcCCCCCc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GH--AKTLDFSQKG-LLA-VGTGS-FAQILGDFSGSH  180 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~--v~~~~~s~~g-l~~-~~~d~-~i~v~d~~~~~~  180 (359)
                      |+..|+++.|+..|+.+++++.||+|+.||+..+...++|.  .+  ..|++..|.| +++ ++.|. .|.||++.++ +
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q  469 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q  469 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence            99999999999999999999999999999999999988883  33  4889999999 544 44453 7999996555 8


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      .+..+.+|.+    +|.+++|+|++..|++|+.|.++++|..-
T Consensus       470 llDiLsGHEg----PVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  470 LLDILSGHEG----PVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             eeehhcCCCC----cceeeEEccccCeEEeccccceEEEEEee
Confidence            8888999876    99999999999999999999999997543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-23  Score=171.50  Aligned_cols=176  Identities=16%  Similarity=0.229  Sum_probs=160.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ..+.|.-||+|.++||.                       .|..++.+.|+..|++|+.|..|.+||+.||+.+..|.+|
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence            67889999999999987                       7888999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCC--CeeeEee---cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRK--YEVLQTL---TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~--~~~~~~~---~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      .+.|+.+.|+.+...+++|+.|.++++||.++  .++++.+   .+.|.++..+...+++++.||+++.||++.+ ....
T Consensus       101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G-~l~s  179 (307)
T KOG0316|consen  101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG-TLSS  179 (307)
T ss_pred             cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecc-eeeh
Confidence            99999999999999999999999999999986  4677777   5678999988777999999999999997665 5666


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE--------------------------------EEcCCCCCceee
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI--------------------------------LVPRSSEPNFDS  231 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i--------------------------------~~~gs~~~~~~~  231 (359)
                      -|.+|      +|+|++|++++++++.++-|+++++                                +++|+.|+.+..
T Consensus       180 Dy~g~------pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~  253 (307)
T KOG0316|consen  180 DYFGH------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF  253 (307)
T ss_pred             hhcCC------cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEE
Confidence            77777      8999999999999999999999887                                688999999999


Q ss_pred             ecc
Q 040274          232 WVA  234 (359)
Q Consensus       232 ~~~  234 (359)
                      |+.
T Consensus       254 wdL  256 (307)
T KOG0316|consen  254 WDL  256 (307)
T ss_pred             EEe
Confidence            986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4e-24  Score=185.32  Aligned_cols=149  Identities=16%  Similarity=0.225  Sum_probs=127.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-Eee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-QTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-~~~  147 (359)
                      +|.|++|+|+|..|++|+.|.+|++||+.|..++.+.++|..-|.|++|+|||..||+|+.||.|++||..+|+++ ..+
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999988754 344


Q ss_pred             c---CCceeEEEcCCC-------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          148 T---GHAKTLDFSQKG-------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       148 ~---~~v~~~~~s~~g-------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      .   .+|++++|.|-.       +++++.||+|+|||+ ..+..+..+.+|..    +|+|++|--+ .+|++|+.|++|
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~-~~~~~~~~lsgHT~----~VTCvrwGG~-gliySgS~DrtI  270 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT-KLGTCVRTLSGHTA----SVTCVRWGGE-GLIYSGSQDRTI  270 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEc-cCceEEEEeccCcc----ceEEEEEcCC-ceEEecCCCceE
Confidence            4   458999998732       677788999999995 44467777778866    8999999654 477777777766


Q ss_pred             EEEEcC
Q 040274          218 GILVPR  223 (359)
Q Consensus       218 ~i~~~g  223 (359)
                      .+|...
T Consensus       271 kvw~a~  276 (480)
T KOG0271|consen  271 KVWRAL  276 (480)
T ss_pred             EEEEcc
Confidence            666543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=7.6e-23  Score=194.34  Aligned_cols=173  Identities=22%  Similarity=0.328  Sum_probs=150.2

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ++++|+|||+++++++.                        .|++++|+|+++++++|+.|++|+|||+.+++++..+.+
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence            99999999999999987                        899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--eeEee----cC-CceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--VLQTL----TG-HAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--~~~~~----~~-~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      |.+.|++++|+++|++|++++.|+.|++||+.++.  ++..+    .. ++++++|+|+|  +++++.|+.+.+||+...
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999999998  55555    12 57999999999  777778889999996544


Q ss_pred             CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          179 SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                       .....+..|.. ....+.+..+++.+.++++|+.|+.+.+|...++.
T Consensus       367 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  367 -KSVGTYTGHSN-LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             -cceeeecccCC-cceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence             56667777743 11245566678899999999999999998887643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.91  E-value=3.4e-23  Score=174.45  Aligned_cols=164  Identities=16%  Similarity=0.195  Sum_probs=147.1

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      +.+.|+|+|.+||+||.                        .|..+.|.+|++.|++++.|.+|+.||..+|+.+..+.+
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~  130 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG  130 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence            99999999999999997                        899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          108 HQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       108 h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      |.+-|+++.-+.-| .++.+++.|+++++||+|+..+++++  +..++++.|..++  .++++-|+.|.+||++.. ...
T Consensus       131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~  209 (338)
T KOG0265|consen  131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGL  209 (338)
T ss_pred             ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccC-cce
Confidence            99999999854434 45677888999999999999999998  5678999999988  899999999999997665 556


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ..+.+|..    +|+.+..+|+|.++++-+.|..+++|
T Consensus       210 ~~lsGh~D----tIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  210 YTLSGHAD----TITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             EEeecccC----ceeeEEeccCCCccccccccceEEEE
Confidence            66677755    89999999999999999999988774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=191.93  Aligned_cols=166  Identities=16%  Similarity=0.254  Sum_probs=132.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|..|.||.++ +|++++.|.+|+||++....|+..| .|...|+|++|+| |.+||++|+.||.|+||++...+.+.-.
T Consensus       371 DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~  448 (712)
T KOG0283|consen  371 DILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN  448 (712)
T ss_pred             hheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh
Confidence            89999999754 9999999999999999999999888 7999999999999 8899999999999999999987765544


Q ss_pred             --cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccc--c---cCCCCcceeEEEEccCC-CEEEEEeCCCeE
Q 040274          148 --TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMG--N---SMVKGYQIGKVSFRPYE-DVLGIGHSMGWS  217 (359)
Q Consensus       148 --~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~--~---~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~  217 (359)
                        ..-|++++|+|+|  .+.|+.+|.+++|++... .......-  +   .. .+..|+.+.|.|.. +.+++.+.|..|
T Consensus       449 Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~-~~~rITG~Q~~p~~~~~vLVTSnDSrI  526 (712)
T KOG0283|consen  449 DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKKK-QGKRITGLQFFPGDPDEVLVTSNDSRI  526 (712)
T ss_pred             hhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccCccc-cCceeeeeEecCCCCCeEEEecCCCce
Confidence              5679999999999  788889999999996443 22221111  1   11 12269999998754 457777788877


Q ss_pred             EE--------------------------------EEcCCCCCceeeeccCCCC
Q 040274          218 GI--------------------------------LVPRSSEPNFDSWVANPFE  238 (359)
Q Consensus       218 ~i--------------------------------~~~gs~~~~~~~~~~~~~~  238 (359)
                      +|                                ++.++.|..+.+|...++.
T Consensus       527 RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  527 RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            77                                6777888889999875443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.90  E-value=7.2e-22  Score=177.61  Aligned_cols=154  Identities=17%  Similarity=0.232  Sum_probs=137.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee---cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML---YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      -|+|+.|+|||..|++++.||.|.+||-.+++.+..+.   +|.+.|++++|+||+..|+|++.|.+++|||+.+.+++.
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            79999999999999999999999999999999999888   899999999999999999999999999999999999999


Q ss_pred             eec------CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TLT------GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~~------~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      ++.      .....+-|-.+.+++++.+|+|.+++.... .....+.+|..    .|+++..+|++.+|++|+.||.+.-
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK----~ITaLtv~~d~~~i~SgsyDG~I~~  346 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP-SVLKVISGHNK----SITALTVSPDGKTIYSGSYDGHINS  346 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC-Chhheeccccc----ceeEEEEcCCCCEEEeeccCceEEE
Confidence            883      223556676555999999999999996555 47777778755    8999999999999999999999999


Q ss_pred             EEcCCCCC
Q 040274          220 LVPRSSEP  227 (359)
Q Consensus       220 ~~~gs~~~  227 (359)
                      |..+++..
T Consensus       347 W~~~~g~~  354 (603)
T KOG0318|consen  347 WDSGSGTS  354 (603)
T ss_pred             EecCCccc
Confidence            98887743

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=1.8e-21  Score=184.81  Aligned_cols=171  Identities=15%  Similarity=0.225  Sum_probs=140.4

Q ss_pred             eEEEECC-CCCEEEEecc------------------------------ceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------------RTDLMRVNPFN-GVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------------~v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~   99 (359)
                      ++++|+| ++++|++|+.                              .|.+++|+|++ .+|++|+.|++|+|||+.++
T Consensus        79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg  158 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG  158 (493)
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence            8999999 8999999876                              57889999975 69999999999999999999


Q ss_pred             cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC----ceeEEEcCCC--cEEEE----cCCc
Q 040274          100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH----AKTLDFSQKG--LLAVG----TGSF  169 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----v~~~~~s~~g--l~~~~----~d~~  169 (359)
                      ..+..+.+|...|++++|+|+|.+|++++.|+.|++||+++++.+.++.++    +..+.|++++  +++++    .|+.
T Consensus       159 ~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence            999899999999999999999999999999999999999999988877443    3467888886  66555    3689


Q ss_pred             EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 040274          170 AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVPRSS  225 (359)
Q Consensus       170 i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~gs~  225 (359)
                      |.+||++...........+   ....+....|++++.+|++|+ .||.+++|....+
T Consensus       239 VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        239 IMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            9999986654333332222   223466778999999999887 5999999866544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=5.7e-23  Score=174.84  Aligned_cols=180  Identities=12%  Similarity=0.195  Sum_probs=147.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~  100 (359)
                      -|..|||||+||++|+-                               +|.|++||.|..++++|+.||.|.+|.+.+|.
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence            68889999999999986                               89999999999999999999999999999999


Q ss_pred             ceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEc
Q 040274          101 LLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILG  174 (359)
Q Consensus       101 ~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d  174 (359)
                      |+..|. +|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|   |+...|+++|  +++++.||+|.||+
T Consensus       297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence            999998 89999999999999999999999999999999999999999665   7889999999  99999999999999


Q ss_pred             CCCCCc-------------------------------------------cccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          175 DFSGSH-------------------------------------------NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       175 ~~~~~~-------------------------------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ..++..                                           .+..+.... ..++...++..+|.|.|+++.
T Consensus       377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk-REgGdFi~~~lSpkGewiYci  455 (508)
T KOG0275|consen  377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK-REGGDFINAILSPKGEWIYCI  455 (508)
T ss_pred             CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC-ccCCceEEEEecCCCcEEEEE
Confidence            654310                                           000111100 123344556788999999999


Q ss_pred             eCCCeEEEEEc--CCCCCceeee
Q 040274          212 HSMGWSGILVP--RSSEPNFDSW  232 (359)
Q Consensus       212 ~~dg~~~i~~~--gs~~~~~~~~  232 (359)
                      +.|+.+..|..  |.-+.++.+-
T Consensus       456 gED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  456 GEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             ccCcEEEEEEeecCceeeeeecc
Confidence            99998766543  3334444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.3e-22  Score=170.75  Aligned_cols=176  Identities=13%  Similarity=0.169  Sum_probs=152.3

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      +++.|+..|++|++++.                        .|.++.|-|.|.+|++++.|.+|.+|++.++-++.+|.+
T Consensus       154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~  233 (406)
T KOG0295|consen  154 FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG  233 (406)
T ss_pred             eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC
Confidence            99999999999999987                        899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcC--------------CC---cEEEEcC
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQ--------------KG---LLAVGTG  167 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~--------------~g---l~~~~~d  167 (359)
                      |..-|..+..+.||.++++++.|.+|++|-+.++++...+   .-+|-+++|-|              +|   +.+++.|
T Consensus       234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            9999999999999999999999999999999998665555   44577888855              22   6677889


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      ++|++||+.++ ..+.++.+|..    .|..++|+|.|+||+++.+|+.+++|.-.... ....|+
T Consensus       314 ktIk~wdv~tg-~cL~tL~ghdn----wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~-cmk~~~  373 (406)
T KOG0295|consen  314 KTIKIWDVSTG-MCLFTLVGHDN----WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ-CMKTLE  373 (406)
T ss_pred             ceEEEEeccCC-eEEEEEecccc----eeeeeEEcCCCeEEEEEecCCcEEEEEeccce-eeeccC
Confidence            99999997665 66777777754    89999999999999999999999988655443 234444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.9e-22  Score=175.35  Aligned_cols=178  Identities=17%  Similarity=0.244  Sum_probs=153.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ++++|-.||++|++|..                       +|+.+.|+| ++..+++|+.|+.+.+||+.+......+.+
T Consensus        72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~  151 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG  151 (487)
T ss_pred             eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence            89999999999999876                       899999999 667899999999999999999887668889


Q ss_pred             CCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCC-eeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccc
Q 040274          108 HQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKY-EVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       108 h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~-~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      |++.|.|.+|+| ++.+++|||.||.|++||+++. ..+.++  ..+|.++.+-|.| +++.+.++.|+|||+..++..+
T Consensus       152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999999999999 5668999999999999999986 667777  4578999999998 8888888999999988777777


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeecc
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVA  234 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~~  234 (359)
                      .....|.-    .|+|+++..++..|++|+-|+.+.+|..+ .-..+..|..
T Consensus       232 ~~~~~H~K----tVTcL~l~s~~~rLlS~sLD~~VKVfd~t-~~Kvv~s~~~  278 (487)
T KOG0310|consen  232 TSMFNHNK----TVTCLRLASDSTRLLSGSLDRHVKVFDTT-NYKVVHSWKY  278 (487)
T ss_pred             hhhhcccc----eEEEEEeecCCceEeecccccceEEEEcc-ceEEEEeeec
Confidence            66666644    79999999999999999999999999843 3334555654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.89  E-value=8.5e-22  Score=175.02  Aligned_cols=147  Identities=20%  Similarity=0.359  Sum_probs=131.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCC---------CEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG---------HLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g---------~~l~s~~~d~~i~vwd~~  139 (359)
                      .|++|.|+|.|.+|+++|.|++++||+.....+...|.+|...|+.+.|+|+|         ..+++++.|++|++||+.
T Consensus       361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            89999999999999999999999999999888999999999999999999954         479999999999999999


Q ss_pred             CCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          140 KYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       140 ~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .+.++++|   ..+|++++|||+|  +++++.|+.|.+|++... ..+..+.+..     .|..++|+.+|+.|..+..|
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~~~~-----~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQGTG-----GIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch-heeEeecCCC-----eEEEEEEcCCCCEEEEEecC
Confidence            99999999   4569999999999  777888999999996544 6666665543     59999999999999999999


Q ss_pred             CeEEEEE
Q 040274          215 GWSGILV  221 (359)
Q Consensus       215 g~~~i~~  221 (359)
                      |.+.++.
T Consensus       515 ~~vcvld  521 (524)
T KOG0273|consen  515 GSVCVLD  521 (524)
T ss_pred             CCceEEE
Confidence            9887764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3e-21  Score=160.66  Aligned_cols=162  Identities=17%  Similarity=0.237  Sum_probs=137.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS---ALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~---~~~~  103 (359)
                      .+++|+|.|++|++++.                         .|-|++||++|.+||+++.|.+|-||.+..+   .++.
T Consensus        65 RsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a  144 (312)
T KOG0645|consen   65 RSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA  144 (312)
T ss_pred             eeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence            78999999999999987                         8999999999999999999999999998744   5778


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC---CCeeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR---KYEVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~---~~~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      .+..|+..|-.+.|+|...+|++++.|.+|++|+-.   ...+++++.+   .|.+++|++.|  |++++.|+++.||-.
T Consensus       145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            899999999999999999999999999999999765   3467888854   58999999999  899999999999974


Q ss_pred             CCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          176 FSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      ...     .-..    +...++.+.|.  ...|++++.|+.++++....
T Consensus       225 ~~~-----~~~~----~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  225 YTD-----LSGM----HSRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ccC-----cchh----cccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            321     1112    33478889998  56789999999888887653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.89  E-value=3.8e-22  Score=171.78  Aligned_cols=155  Identities=19%  Similarity=0.272  Sum_probs=141.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|.|+++.|.+.+|++|+.|++|.|||+.+++...++.+|...|..+++|+-..||++++.|+.|+.||+...+.++.+-
T Consensus       153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh  232 (460)
T KOG0285|consen  153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH  232 (460)
T ss_pred             eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ||   |.|++.+|.-  +++++.|.+++|||+++. ..+..+.+|..    +|.++.+.|....+++|+.|+++++|.-.
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~----~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTN----PVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCC----cceeEEeecCCCceEEecCCceEEEeeec
Confidence            65   7899999987  899999999999998765 66777888866    89999999999999999999999998655


Q ss_pred             CCCCc
Q 040274          224 SSEPN  228 (359)
Q Consensus       224 s~~~~  228 (359)
                      .+...
T Consensus       308 agkt~  312 (460)
T KOG0285|consen  308 AGKTM  312 (460)
T ss_pred             cCcee
Confidence            55433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.7e-22  Score=162.80  Aligned_cols=177  Identities=15%  Similarity=0.219  Sum_probs=148.8

Q ss_pred             eEEEECCCCCEEE--Eecc-----------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMA--VAGR-----------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~--~~~~-----------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      |+++|+++....+  .+|+                       .|.++.|++ .+..++++|.||+|++|++..+..+.+|
T Consensus        64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence            9999998655433  3333                       899999999 6677889999999999999999999999


Q ss_pred             ecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCC-CeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCC
Q 040274          106 LYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRK-YEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       106 ~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~-~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~  177 (359)
                      .+|...|....|+| .+++|++++.|+++++||++. |+.+. +   ...+.|+.|+.-.   +++++.|+.|++||++.
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            99999999999999 688999999999999999986 44433 5   3458999998865   77888999999999988


Q ss_pred             CCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      -..++..+.+|..    .|..+.|||.. .+|++++.|-+++||.+...+..+..++
T Consensus       223 ~r~pl~eL~gh~~----AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~  275 (311)
T KOG0277|consen  223 LRTPLFELNGHGL----AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD  275 (311)
T ss_pred             ccccceeecCCce----EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence            7777777767655    89999999965 7899999999999998887777666554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.88  E-value=7.4e-21  Score=193.21  Aligned_cols=167  Identities=16%  Similarity=0.216  Sum_probs=142.3

Q ss_pred             eEEEECCCCCEEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~  100 (359)
                      .+++|+|+|++|++|+.                              .+.+++|+| ++.+|++|+.||+|++||+.+++
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~  566 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ  566 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe
Confidence            88999999999999886                              246788887 57899999999999999999999


Q ss_pred             ceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcC-CC--cEEEEcCCcEEEEc
Q 040274          101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ-KG--LLAVGTGSFAQILG  174 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~-~g--l~~~~~d~~i~v~d  174 (359)
                      .+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.++..+  ...+.++.|++ +|  +++++.|+.|++||
T Consensus       567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999997 7899999999999999999998888777  34678999954 56  78888999999999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +.........+.+|..    .|+++.|. ++.+|++++.|+.+.+|...
T Consensus       647 ~~~~~~~~~~~~~h~~----~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        647 LRNPKLPLCTMIGHSK----TVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             CCCCCccceEecCCCC----CEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            7655334444555543    79999997 78899999999999998754

>PTZ00421 coronin; Provisional

Probab=99.88  E-value=1.2e-20  Score=179.35  Aligned_cols=147  Identities=14%  Similarity=0.259  Sum_probs=120.3

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~  139 (359)
                      .|++++|+| ++.+|++|+.||+|++||+.++       .++..+.+|...|.+++|+|++ ++|++++.|++|+|||+.
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            799999999 8889999999999999998764       3567888999999999999975 689999999999999999


Q ss_pred             CCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe--
Q 040274          140 KYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH--  212 (359)
Q Consensus       140 ~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~--  212 (359)
                      +++.+..+.   ..|.+++|+|+|  +++++.|+.|+|||++.+ .....+..|.   +..+..+.|++++..|++++  
T Consensus       157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~---~~~~~~~~w~~~~~~ivt~G~s  232 (493)
T PTZ00421        157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHA---SAKSQRCLWAKRKDLIITLGCS  232 (493)
T ss_pred             CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCC---CCcceEEEEcCCCCeEEEEecC
Confidence            998887774   458999999999  778888999999997665 4455555553   22355778999887777654  


Q ss_pred             --CCCeEEE
Q 040274          213 --SMGWSGI  219 (359)
Q Consensus       213 --~dg~~~i  219 (359)
                        .|+.+.+
T Consensus       233 ~s~Dr~Vkl  241 (493)
T PTZ00421        233 KSQQRQIML  241 (493)
T ss_pred             CCCCCeEEE
Confidence              2455554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.87  E-value=6.4e-21  Score=156.99  Aligned_cols=177  Identities=13%  Similarity=0.194  Sum_probs=146.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h  108 (359)
                      .++.|..||+.+.+|+.                      +|+++..+|+..-|++|..+|.|++||+....+...+. ..
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            88999999999999998                      89999999998899999999999999999876655544 34


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC------eeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKY------EVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~------~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      ..+|.++++.|||.+|+.+...|++++|++-..      .++..+   .+++..+.+||++  ++++|.|.+++||++..
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            468999999999999999999999999998763      344445   5679999999999  88888999999999654


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      .-.....+.+|..    .++.++||.||.||++|+.|+..++|....+. .++.|.
T Consensus       247 ~~kle~~l~gh~r----WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k-~v~qy~  297 (311)
T KOG0315|consen  247 FFKLELVLTGHQR----WVWDCAFSADGEYLVTASSDHTARLWDLSAGK-EVRQYQ  297 (311)
T ss_pred             ceeeEEEeecCCc----eEEeeeeccCccEEEecCCCCceeecccccCc-eeeecC
Confidence            4233334455544    89999999999999999999998888876654 244443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.87  E-value=1.9e-21  Score=167.44  Aligned_cols=179  Identities=13%  Similarity=0.232  Sum_probs=157.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .|+++.|...++++|+.                       .|..+++|+-..|+++++.|+.|.-||+...+.+..+.+|
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH  234 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH  234 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence            89999999999999887                       7899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      -+.|.|++.+|.-..|+||+.|.+++|||+|+...++.+.|   +|.++.+.|..  +++++.|++|++||++.+ +...
T Consensus       235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag-kt~~  313 (460)
T KOG0285|consen  235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG-KTMI  313 (460)
T ss_pred             cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC-ceeE
Confidence            99999999999999999999999999999999999998865   47888888755  999999999999998766 4444


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE----------------------------EEEcCCCCCceeeeccC
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG----------------------------ILVPRSSEPNFDSWVAN  235 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~----------------------------i~~~gs~~~~~~~~~~~  235 (359)
                      .+..|..    .|.+++.+|....+++++.|.+-.                            ++++|++.+.+..|++.
T Consensus       314 tlt~hkk----svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  314 TLTHHKK----SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             eeecccc----eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecC
Confidence            4444433    799999999999999988887521                            37888888999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.87  E-value=3.6e-21  Score=158.58  Aligned_cols=169  Identities=15%  Similarity=0.280  Sum_probs=144.0

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ..++|+.|.++|++|+.                        .|..+.|....+.|++++.|++|++||.+++..+.++.-
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~  183 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF  183 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence            88999999999999997                        788999988888888889999999999999999888854


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                       ..+|+++.++++|.+|.++ ..+.|.+||..+..++..+  +..|.+...+|+-  +++++.|..++.||..++ ..+.
T Consensus       184 -~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~  260 (334)
T KOG0278|consen  184 -NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIG  260 (334)
T ss_pred             -CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC-ceee
Confidence             7789999999999877554 5577999999999999888  5568899999987  888999999999996665 4444


Q ss_pred             cc-ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          184 RY-MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       184 ~~-~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      .+ .+|.+    +|.|+.|+|+|...++|+.||++++|....+..
T Consensus       261 ~~nkgh~g----pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  261 SYNKGHFG----PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ecccCCCC----ceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            44 56644    899999999999999999999888887765543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=168.23  Aligned_cols=166  Identities=16%  Similarity=0.191  Sum_probs=128.8

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      |-+.||++|+|||+++.                          +|..+.||||.+++++|+.|..+.+||+.+|.....+
T Consensus       228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  228 WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            89999999999999987                          8999999999999999999999999999999887776


Q ss_pred             e-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC----------------------eeeEe---------e------
Q 040274          106 L-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY----------------------EVLQT---------L------  147 (359)
Q Consensus       106 ~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~----------------------~~~~~---------~------  147 (359)
                      . +|...+.+++|.|||..|++|+.|++|..||++..                      +.+..         +      
T Consensus       308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            5 44678999999999999999999999999987521                      11000         0      


Q ss_pred             -------cCCceeEEEcCCC-cEE-EEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeE
Q 040274          148 -------TGHAKTLDFSQKG-LLA-VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWS  217 (359)
Q Consensus       148 -------~~~v~~~~~s~~g-l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~  217 (359)
                             ..+++++++|.+| ++. .-.+..+++||+. ....+..|.+|.. .. -+-.-+|.- +..++++|+.|+.+
T Consensus       388 dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq-~~-fiIrSCFgg~~~~fiaSGSED~kv  464 (519)
T KOG0293|consen  388 DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQ-GH-FIIRSCFGGGNDKFIASGSEDSKV  464 (519)
T ss_pred             hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccc-cc-eEEEeccCCCCcceEEecCCCceE
Confidence                   1235677777777 333 3356778888865 4467778888864 22 344445554 55899999999998


Q ss_pred             EEE
Q 040274          218 GIL  220 (359)
Q Consensus       218 ~i~  220 (359)
                      .||
T Consensus       465 yIW  467 (519)
T KOG0293|consen  465 YIW  467 (519)
T ss_pred             EEE
Confidence            884

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=6.1e-21  Score=178.16  Aligned_cols=168  Identities=20%  Similarity=0.275  Sum_probs=147.1

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++++||||.++++|+.                       .|+.+.|+..|+.+++.|-||+|+.||+.....-.+|.+.
T Consensus       354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P  433 (893)
T KOG0291|consen  354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP  433 (893)
T ss_pred             eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence            89999999999999998                       8999999999999999999999999999998888888753


Q ss_pred             C-CCeEEEEEecCCCEEEEecCCC-eEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc
Q 040274          109 Q-GPVSALAFHPNGHLMATTGKEC-KIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       109 ~-~~v~~l~~~p~g~~l~s~~~d~-~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      . -...|++..|.|.+++.|+.|. .|++|++.+|+.+-.+   .++|.+++|+|+|  ++++++|.+|++||+......
T Consensus       434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence            3 3567899999999999998886 5999999999998877   5679999999999  889999999999998766555


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      ..++....     .+..++|+|+|+.|++++-||.+.+|.+-.
T Consensus       514 vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  514 VETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            55554432     699999999999999999999999987543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.87  E-value=1.2e-21  Score=174.73  Aligned_cols=167  Identities=20%  Similarity=0.324  Sum_probs=138.2

Q ss_pred             eEEEECC-CCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.|.| .|.+|++++-                        +|..++|+++|..|++++.|+.|++||+.||+++..|.
T Consensus       218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~  297 (503)
T KOG0282|consen  218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH  297 (503)
T ss_pred             chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe
Confidence            6777778 7878888776                        89999999999999999999999999999999999885


Q ss_pred             cCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC-
Q 040274          107 YHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS-  179 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~-  179 (359)
                      . ...++|+.|+|++ +.|++|+.|+.|+.||+|+++.++++.   +.|..+.|-++|  +++++.|++++||+...+- 
T Consensus       298 ~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  298 L-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             c-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            4 5667999999988 889999999999999999999999984   568999999999  8899999999999854320 


Q ss_pred             --------------------------------------------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          180 --------------------------------------------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       180 --------------------------------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                                                                  .....+.+|.. .+. -+.+.|||||++|++|..+|
T Consensus       377 ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGy-s~~v~fSpDG~~l~SGdsdG  454 (503)
T KOG0282|consen  377 IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGY-SCQVDFSPDGRTLCSGDSDG  454 (503)
T ss_pred             chhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCc-eeeEEEcCCCCeEEeecCCc
Confidence                                                        00112334432 333 45689999999999999999


Q ss_pred             eEEEEE
Q 040274          216 WSGILV  221 (359)
Q Consensus       216 ~~~i~~  221 (359)
                      .+.+|.
T Consensus       455 ~v~~wd  460 (503)
T KOG0282|consen  455 KVNFWD  460 (503)
T ss_pred             cEEEee
Confidence            888764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=5.1e-21  Score=178.32  Aligned_cols=151  Identities=19%  Similarity=0.326  Sum_probs=138.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|+|++++|+..+|+|||.|.+..||++.....+.++.+|+..|+++.|+|....++|+|.|++|+||.+.++.|+.+|.
T Consensus       465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE  544 (775)
T ss_pred             cccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec
Confidence            89999999999999999999999999999989999999999999999999999999999999999999999999999997


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ||   |..+.|-.+|  +++++.||-|.+|++.+. .....+..|..    .|++++.+|.+..+++|+.||.+.+|-..
T Consensus       545 GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~D----rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  545 GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHND----RVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccc----eeEEEeecCccceeEecCCCeEEEEeecC
Confidence            76   6778898888  999999999999996554 77778888865    89999999999999999999988877654


Q ss_pred             C
Q 040274          224 S  224 (359)
Q Consensus       224 s  224 (359)
                      +
T Consensus       620 T  620 (775)
T KOG0319|consen  620 T  620 (775)
T ss_pred             c
Confidence            3

>PTZ00420 coronin; Provisional

Probab=99.87  E-value=1.6e-20  Score=179.53  Aligned_cols=166  Identities=14%  Similarity=0.169  Sum_probs=129.8

Q ss_pred             ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc--------ceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSA--------LLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~  138 (359)
                      .|.+++|+|+ +.+|++|+.||+|+|||+.++.        ++..+.+|...|.+++|+|++.. |++++.|++|++||+
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            7999999996 7899999999999999997642        34567899999999999998876 578999999999999


Q ss_pred             CCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCC-CcceeEEEEccCCCEEEEEeC
Q 040274          139 RKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVK-GYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       139 ~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      ++++.+..+  ...|.+++|+|+|  +++++.|+.|+|||++.+ .....+.+|.+.. ...++...|++++.+|++++.
T Consensus       156 ~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~  234 (568)
T PTZ00420        156 ENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF  234 (568)
T ss_pred             CCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence            998876665  4568999999999  555667999999997665 5555666674310 011233456689999988776


Q ss_pred             CC----eEEE---------------------------------EEcCCCCCceeeeccC
Q 040274          214 MG----WSGI---------------------------------LVPRSSEPNFDSWVAN  235 (359)
Q Consensus       214 dg----~~~i---------------------------------~~~gs~~~~~~~~~~~  235 (359)
                      ++    .+.|                                 ++.|++|+++++|++.
T Consensus       235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            64    3333                                 4567889999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.87  E-value=5.8e-22  Score=176.63  Aligned_cols=146  Identities=17%  Similarity=0.194  Sum_probs=135.0

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTT-SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .|+++.|.| .+.+|++|+.|+.|.||++.. +.++.+|.+|..+|.+++|+++|..|+|+|-|+.|++||..+|+++..
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~  295 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR  295 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence            899999999 889999999999999999876 889999999999999999999999999999999999999999999999


Q ss_pred             e--cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          147 L--TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       147 ~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      +  ...++|+.|.|++   +++|+.|+.|..||++.+ ..+..|..|-+    .|..+.|-++|..+++.++|+.++|
T Consensus       296 f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg----~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  296 FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLG----AILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhh----heeeeEEccCCceEeeeccCccEEE
Confidence            8  3457999999998   889999999999997766 68888888765    8999999999999999999998877

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.87  E-value=4.1e-21  Score=162.70  Aligned_cols=173  Identities=13%  Similarity=0.236  Sum_probs=145.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------------ceeEEEEcCCCCEEEEEeCCCe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------------RTDLMRVNPFNGVVSLGHSGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------------~v~~l~~sp~~~~l~tg~~dg~   90 (359)
                      .+.+|||||.++++|+.                                         .|+++.|+|...+|++|+.|++
T Consensus       116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t  195 (430)
T KOG0640|consen  116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT  195 (430)
T ss_pred             eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence            77889999999999987                                         8999999999999999999999


Q ss_pred             EEEEeCCCCcceE--EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee------cCCceeEEEcCCC--
Q 040274           91 VTMWKPTTSALLI--KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG--  160 (359)
Q Consensus        91 v~lwd~~~~~~~~--~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g--  160 (359)
                      |.++|........  .......+|.+++|+|.|.+|+.|....++++||+.+.++...-      .+.|+++.+|++|  
T Consensus       196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l  275 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL  275 (430)
T ss_pred             EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence            9999987543222  22244678999999999999999999999999999999886554      3568999999999  


Q ss_pred             cEEEEcCCcEEEEcCCCCCccccccc-cccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCc
Q 040274          161 LLAVGTGSFAQILGDFSGSHNYSRYM-GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPN  228 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~  228 (359)
                      +++++.||.|++||-..+ ..+..+. .|   .++.|++..|..+|+||++.+.|..+.+|--+++...
T Consensus       276 YvTaSkDG~IklwDGVS~-rCv~t~~~AH---~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  276 YVTASKDGAIKLWDGVSN-RCVRTIGNAH---GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             EEEeccCCcEEeeccccH-HHHHHHHhhc---CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            889999999999995444 4555543 44   4578999999999999999999999999987776543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.4e-20  Score=149.60  Aligned_cols=162  Identities=16%  Similarity=0.141  Sum_probs=135.2

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcC----CCCEEEEEe-CCCeEEEEeCCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNP----FNGVVSLGH-SGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp----~~~~l~tg~-~dg~v~lwd~~~   98 (359)
                      ||.+|||+|.+|++|+.                            .|..|+|-.    .+.+|++++ .|..|++-|..+
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence            99999999999999987                            788888843    244666655 467788889999


Q ss_pred             CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----------CCceeEEEcCCC--cEEEEc
Q 040274           99 SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----------GHAKTLDFSQKG--LLAVGT  166 (359)
Q Consensus        99 ~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----------~~v~~~~~s~~g--l~~~~~  166 (359)
                      |+....+.+|++.|.++. +=+|-++++|+.|.+|++||++-..++.++.          ..|.+++..|.|  ++++-.
T Consensus       173 g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  173 GQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             CCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence            999999999999998873 3367899999999999999999998888871          347899999999  555557


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      |..+.+||++. +..+..+..|..    .|.|+.|+|...||++++.|..+.+
T Consensus       252 dssc~lydirg-~r~iq~f~phsa----dir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  252 DSSCMLYDIRG-GRMIQRFHPHSA----DIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             CCceEEEEeeC-CceeeeeCCCcc----ceeEEEeCCCceEEEEecccceEEE
Confidence            89999999654 467777766654    8999999999999999999998776

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=8.9e-21  Score=173.75  Aligned_cols=152  Identities=19%  Similarity=0.247  Sum_probs=137.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-ALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .|.|++.||.-.+++|+|.|-+|++||.... .+.++|.+|...|.+++|+| |.+.|++++.|++|+||.+-+..+..+
T Consensus        99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT  178 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT  178 (794)
T ss_pred             ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence            7999999999999999999999999998854 78889999999999999999 778899999999999999998888888


Q ss_pred             ecCC---ceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          147 LTGH---AKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       147 ~~~~---v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      +.+|   |+|++|-+.|    +++++.|.+|.|||. .....+.++.+|..    .|+.+.|+|.-.++++|+.||+++|
T Consensus       179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy-Qtk~CV~TLeGHt~----Nvs~v~fhp~lpiiisgsEDGTvri  253 (794)
T KOG0276|consen  179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY-QTKSCVQTLEGHTN----NVSFVFFHPELPIIISGSEDGTVRI  253 (794)
T ss_pred             eeccccCcceEEeccCCCcceEEecCCCceEEEeec-chHHHHHHhhcccc----cceEEEecCCCcEEEEecCCccEEE
Confidence            8665   8999999988    888889999999994 44578888888865    7999999999999999999999999


Q ss_pred             EEcCCC
Q 040274          220 LVPRSS  225 (359)
Q Consensus       220 ~~~gs~  225 (359)
                      |.+.+-
T Consensus       254 Whs~Ty  259 (794)
T KOG0276|consen  254 WNSKTY  259 (794)
T ss_pred             ecCcce
Confidence            977653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=8.9e-21  Score=176.99  Aligned_cols=165  Identities=13%  Similarity=0.179  Sum_probs=148.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~   96 (359)
                      |+++.+||++.+++|+.                                   .|.|+.+|||+.+|+++--|.+|.||-+
T Consensus       458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl  537 (888)
T KOG0306|consen  458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL  537 (888)
T ss_pred             eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence            99999999999999987                                   7999999999999999999999999999


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEE
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQ  171 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~  171 (359)
                      ++-+.-.++.||.-||.|+..+||+++++|||.|.+|++|-+.=|.|-.++   .+.|.++.|.|..  ++++|.|+.|.
T Consensus       538 DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  538 DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence            999999999999999999999999999999999999999999999988777   4679999999988  89999999999


Q ss_pred             EEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          172 ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      -|| ...-..+..+.+|..    .|+|++.+|+|.++++++.|..+++|-
T Consensus       618 qWD-g~kFe~iq~L~~H~~----ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  618 QWD-GEKFEEIQKLDGHHS----EVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             eec-hhhhhhheeeccchh----eeeeeEEcCCCCeEEeccCCceeEeee
Confidence            999 344456667777754    799999999999998888777444443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.86  E-value=5.6e-20  Score=165.57  Aligned_cols=87  Identities=20%  Similarity=0.298  Sum_probs=78.3

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-----  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-----  100 (359)
                      .|+.|+|||.++++.|.                          .|.+++|+||+..|+|++.|.+++|||+.+..     
T Consensus       194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             eeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            89999999999999887                          89999999999999999999999999986543     


Q ss_pred             --------------------------------------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc
Q 040274          101 --------------------------------------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus       101 --------------------------------------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                                                            ++..+.+|...|++++.+|++.+|++|+.||.|.-||+
T Consensus       274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence                                                  33345688999999999999999999999999999984

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=7.2e-22  Score=168.15  Aligned_cols=154  Identities=19%  Similarity=0.318  Sum_probs=136.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--------EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--------KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--------~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .+-|..|||||++|++|+-||.|.+|+..+|+...        .|..|..+|.|++|+.|..++++|+.||.|++|.+.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            78899999999999999999999999999886543        3446788999999999999999999999999999999


Q ss_pred             CeeeEeec----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          141 YEVLQTLT----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       141 ~~~~~~~~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      |.|++.|.    ..|+|+.||.|+  +++++.|.+++|.-+.. ++.+..+.+|..    -|+.+.|.++|..+++++.|
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsS----yvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSS----YVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccc----cccceEEcCCCCeEEEecCC
Confidence            99999993    358999999999  99999999999998644 477777777754    79999999999999999999


Q ss_pred             CeEEEEEcCCCCC
Q 040274          215 GWSGILVPRSSEP  227 (359)
Q Consensus       215 g~~~i~~~gs~~~  227 (359)
                      |.+.+|..-+.++
T Consensus       370 gtvkvW~~KtteC  382 (508)
T KOG0275|consen  370 GTVKVWHGKTTEC  382 (508)
T ss_pred             ccEEEecCcchhh
Confidence            9999998776654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=8.4e-21  Score=168.16  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=125.7

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCC--CCcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCC-ee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPT--TSALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKY-EV  143 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~--~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~-~~  143 (359)
                      .|..++|+| +..+|++++.|+.+.|||++  +.++.....+|.+.|+|++|+| ++.+|||||.|++|.+||+|+. .+
T Consensus       229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~  308 (422)
T KOG0264|consen  229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP  308 (422)
T ss_pred             ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC
Confidence            789999999 56789999999999999999  5667777889999999999999 6778999999999999999985 46


Q ss_pred             eEeecC---CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCc----------cccccccccCCCCcceeEEEEccCCCE
Q 040274          144 LQTLTG---HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSH----------NYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       144 ~~~~~~---~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      ++++.+   .|.++.|||+.   +++++.|+.+.|||+..-+.          +...+..|.+ |...|..+.|+|...+
T Consensus       309 lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG-H~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  309 LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG-HTAKVSDFSWNPNEPW  387 (422)
T ss_pred             ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC-cccccccccCCCCCCe
Confidence            788854   48999999987   77778899999999754322          2345677777 7778999999999876


Q ss_pred             -EEEEeCCCeEEEEEc
Q 040274          208 -LGIGHSMGWSGILVP  222 (359)
Q Consensus       208 -l~~g~~dg~~~i~~~  222 (359)
                       |++.+.|+++.||-+
T Consensus       388 ~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQM  403 (422)
T ss_pred             EEEEecCCceEEEeec
Confidence             456666666666554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.86  E-value=1.1e-20  Score=155.77  Aligned_cols=165  Identities=15%  Similarity=0.209  Sum_probs=143.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      -|.+++|+.|..+|++|+.+..++|||++.. .+...+.+|++.|..+-|....+.+++++.|++|++||.+++..++++
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL  181 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL  181 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence            6899999999999999999999999999875 456678899999999999998899999999999999999999999988


Q ss_pred             --cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE-----
Q 040274          148 --TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI-----  219 (359)
Q Consensus       148 --~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i-----  219 (359)
                        +.+|+++.++++| +++.+..+.|.+||...- ..+..+....     .|.+.+.+|+..++++|+.|+.+..     
T Consensus       182 ~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf-~~lKs~k~P~-----nV~SASL~P~k~~fVaGged~~~~kfDy~T  255 (334)
T KOG0278|consen  182 EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF-GLLKSYKMPC-----NVESASLHPKKEFFVAGGEDFKVYKFDYNT  255 (334)
T ss_pred             ecCCCCcceeeccCCCEEEEecCceeEEeccccc-cceeeccCcc-----ccccccccCCCceEEecCcceEEEEEeccC
Confidence              7889999999999 999999999999995433 3444443332     5999999999999999999986542     


Q ss_pred             --------------------------EEcCCCCCceeeeccCCCCC
Q 040274          220 --------------------------LVPRSSEPNFDSWVANPFET  239 (359)
Q Consensus       220 --------------------------~~~gs~~~~~~~~~~~~~~~  239 (359)
                                                +.+|+.|+++++|.++|-+.
T Consensus       256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence                                      78999999999999887554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-19  Score=154.17  Aligned_cols=183  Identities=14%  Similarity=0.229  Sum_probs=145.4

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHS--GGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~--dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+|.|+++|.+|++++.                       .|..++|-.....++.++.  |.+|+..++.+.+.++.|.
T Consensus        18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~   97 (311)
T KOG1446|consen   18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP   97 (311)
T ss_pred             eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence            78999999999999776                       6778888665556666665  8899999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cCCceeEEEcCCC-cEEEEcCC-cEEEEcCCCCCc-cc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TGHAKTLDFSQKG-LLAVGTGS-FAQILGDFSGSH-NY  182 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~v~~~~~s~~g-l~~~~~d~-~i~v~d~~~~~~-~~  182 (359)
                      ||...|++++.+|-+..+++++.|++|++||++..++..-+ ......++|+|.| +++.+.++ .|.+||++.-.. +.
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence            99999999999999999999999999999999987776555 2344678999999 55555554 999999876422 22


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE---------------------------------EEcCCCCCce
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI---------------------------------LVPRSSEPNF  229 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i---------------------------------~~~gs~~~~~  229 (359)
                      ..+.-... .....+.+.|||||++|+.++..+.+.+                                 +..|++|+.+
T Consensus       178 ~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  178 TTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             eeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            22221111 3346899999999999999988886554                                 6778888999


Q ss_pred             eeeccC
Q 040274          230 DSWVAN  235 (359)
Q Consensus       230 ~~~~~~  235 (359)
                      .+|+++
T Consensus       257 ~vw~~~  262 (311)
T KOG1446|consen  257 HVWNLE  262 (311)
T ss_pred             EEEEcC
Confidence            999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.3e-20  Score=155.57  Aligned_cols=148  Identities=17%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCC-CcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTT-SALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .+..++|+++ .+.+++++.||+++|||+.. ..|+..++.|...|.++.|++ ....+++++.|++|++||..-+..+.
T Consensus        62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~  141 (311)
T KOG0277|consen   62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ  141 (311)
T ss_pred             ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence            7899999995 46888999999999999653 368899999999999999998 45568888999999999999999999


Q ss_pred             eecCC---ceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEE
Q 040274          146 TLTGH---AKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSG  218 (359)
Q Consensus       146 ~~~~~---v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~  218 (359)
                      ++.++   |....|||..   +++++.|+++++||++..++... +..|..    .|.|+.|+... .+|++|+.|+.++
T Consensus       142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~----Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNS----EILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccc----eeEeecccccCCcEEEecCCCceEE
Confidence            99766   6788999976   77888999999999877755444 666644    89999999854 6788999999888


Q ss_pred             EEE
Q 040274          219 ILV  221 (359)
Q Consensus       219 i~~  221 (359)
                      +|.
T Consensus       217 ~wD  219 (311)
T KOG0277|consen  217 GWD  219 (311)
T ss_pred             EEe
Confidence            753

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=1.4e-19  Score=173.09  Aligned_cols=171  Identities=13%  Similarity=0.109  Sum_probs=132.4

Q ss_pred             eEEEECCC-CCEEEEecc-------------------------------ceeEEEEcCCCCE-EEEEeCCCeEEEEeCCC
Q 040274           52 ILWILPSS-GRYMAVAGR-------------------------------RTDLMRVNPFNGV-VSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spd-g~~l~~~~~-------------------------------~v~~l~~sp~~~~-l~tg~~dg~v~lwd~~~   98 (359)
                      ++++|+|+ +.+|++|+.                               .|.+++|+|++.. |++|+.|++|+|||+.+
T Consensus        78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t  157 (568)
T PTZ00420         78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN  157 (568)
T ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence            89999996 789998876                               4789999998865 57899999999999999


Q ss_pred             CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---c-----eeEEEcCCC--cEEEEcCC
Q 040274           99 SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---A-----KTLDFSQKG--LLAVGTGS  168 (359)
Q Consensus        99 ~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v-----~~~~~s~~g--l~~~~~d~  168 (359)
                      +..+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|   +     ....|++++  +++++.++
T Consensus       158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~  236 (568)
T PTZ00420        158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK  236 (568)
T ss_pred             CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence            98777765 6678999999999999999999999999999999988888544   2     223355776  77777664


Q ss_pred             ----cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          169 ----FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       169 ----~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                          .|.|||+......+..+..+.  ....+......++|.++++|+.|+.+++|....+
T Consensus       237 ~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        237 NNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence                799999876544444332221  2223444444566899999999999999976443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6.7e-21  Score=180.57  Aligned_cols=146  Identities=23%  Similarity=0.376  Sum_probs=135.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|-.++|||.-.+|+++..+|.|++||.+.+.++..|..|.++|.+++|+|++.+|++||.|-.|+||+..+.+++.++.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~   90 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL   90 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      ||   |..+.|++.-  ++++|.|.+|+||+..+. ..+..+.+|..    -|+|..|+|..+.++++|-|-++++
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnH----YVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNH----YVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCce----EEEeeccCCccceEEEecccceEEE
Confidence            66   7899999988  889999999999996544 77778888865    7999999999999999999999887

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.7e-20  Score=171.95  Aligned_cols=163  Identities=13%  Similarity=0.158  Sum_probs=143.2

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+++.||.-.+++++++                        -|.+++|+| |.+.++++|-|++|.||.+.+..+..++.
T Consensus       101 R~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~  180 (794)
T KOG0276|consen  101 RSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE  180 (794)
T ss_pred             eeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee
Confidence            89999999999999998                        799999999 88899999999999999999999999999


Q ss_pred             cCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCC
Q 040274          107 YHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       107 ~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~  179 (359)
                      +|...|+|+.|-+.  -.+|+||+.|.+|+|||..+..|++++.||   |+.++|+|.-  +++|+.||+++||+. ...
T Consensus       181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs-~Ty  259 (794)
T KOG0276|consen  181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS-KTY  259 (794)
T ss_pred             ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC-cce
Confidence            99999999999874  469999999999999999999999999776   7889999998  889999999999984 333


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .....+.-.    ..+|+|++-.+.+..+++|.+.|.+.+
T Consensus       260 ~lE~tLn~g----leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  260 KLEKTLNYG----LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ehhhhhhcC----CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            333333222    237999999999999999999997765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=3.1e-19  Score=157.75  Aligned_cols=168  Identities=20%  Similarity=0.337  Sum_probs=143.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|++++|++++.                       .+.++.|+|++.+|++++.||.|.+|++.++..+..+..|
T Consensus        13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~   92 (289)
T cd00200          13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH   92 (289)
T ss_pred             EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc
Confidence            89999999999999884                       6779999999999999999999999999988888888899


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~~~  183 (359)
                      ...+.++.|+|++.++++++.|+.|.+||+.+++.+..+.   ..+.+++|+|++ +++++. ++.|.+||+... ....
T Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~  171 (289)
T cd00200          93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVA  171 (289)
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccce
Confidence            9999999999999899998889999999999888777773   458999999988 666555 999999997543 4444


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      .+..|.    ..|.++.|+|++..|++++.+|.+.+|....
T Consensus       172 ~~~~~~----~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         172 TLTGHT----GEVNSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             eEecCc----cccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            444443    3799999999999999999899888877654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.85  E-value=7.2e-20  Score=158.19  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=143.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      +|.+++.+|++++++||+.|..-++|++.++..+..+.+|...|+++.|+.+|.+||||+.+|.|.||+..++.....+.
T Consensus        66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998888774


Q ss_pred             ---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 ---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 ---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                         ..+.-+.|+|.+  +++++.||.+.+|.+... .....+.+|..    ++++-.|.|+|..+++|..||++.+|.+.
T Consensus       146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~----~ct~G~f~pdGKr~~tgy~dgti~~Wn~k  220 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNS----PCTCGEFIPDGKRILTGYDDGTIIVWNPK  220 (399)
T ss_pred             cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCC----CcccccccCCCceEEEEecCceEEEEecC
Confidence               346778899998  888889999999996554 55666777654    89999999999999999999999999999


Q ss_pred             CCCCceeee
Q 040274          224 SSEPNFDSW  232 (359)
Q Consensus       224 s~~~~~~~~  232 (359)
                      ++.+-+++-
T Consensus       221 tg~p~~~~~  229 (399)
T KOG0296|consen  221 TGQPLHKIT  229 (399)
T ss_pred             CCceeEEec
Confidence            987776665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=9.8e-21  Score=177.28  Aligned_cols=151  Identities=14%  Similarity=0.270  Sum_probs=130.9

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTT---SALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~---~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      .+..+.|+. +.++|+|++.+|.|.+||+..   ...+..|..|...+++++|++ ..++|++||.||+|++||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            677888986 678999999999999999986   455667889999999999998 566899999999999999999888


Q ss_pred             eEeec---CCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          144 LQTLT---GHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       144 ~~~~~---~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      ..++.   ..|.++.|+|.-   ++++...|.+++||++........+..|.+    +|.|+.|+|++.+||+|+.|+.+
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G----pV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG----PVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC----ceEEEeecCCCceeeecCCCccE
Confidence            77773   458999999965   666677799999999888777777777766    99999999999999999999999


Q ss_pred             EEEEcC
Q 040274          218 GILVPR  223 (359)
Q Consensus       218 ~i~~~g  223 (359)
                      .||..+
T Consensus       245 kiWd~t  250 (839)
T KOG0269|consen  245 KIWDMT  250 (839)
T ss_pred             EEEecc
Confidence            997554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=3.4e-20  Score=179.74  Aligned_cols=175  Identities=19%  Similarity=0.273  Sum_probs=145.9

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------------ceeEEEEcCCCCEEEEEeCCCe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------------RTDLMRVNPFNGVVSLGHSGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------------~v~~l~~sp~~~~l~tg~~dg~   90 (359)
                      .|+.|+|||+|||+|++                                         .|..++|+|++.+|++++.|++
T Consensus        73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence            99999999999999998                                         7999999999999999999999


Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---------CCceeEEEcCCC-
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---------GHAKTLDFSQKG-  160 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---------~~v~~~~~s~~g-  160 (359)
                      |.||+..+.+.+..+.+|.+.|-.+.|+|-|+|||+-+.|++|+||++.+....+.+.         .+...+.||||| 
T Consensus       153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             EEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence            9999999999999999999999999999999999999999999999988776666662         236889999999 


Q ss_pred             cEEEEc-----CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-----CC------------EEEEEeCCCeEE
Q 040274          161 LLAVGT-----GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-----ED------------VLGIGHSMGWSG  218 (359)
Q Consensus       161 l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~------------~l~~g~~dg~~~  218 (359)
                      ++++..     ..++.|.+ +.+...-..+.+|..    ++.++.|+|.     ..            ++|+|+.|+.+.
T Consensus       233 ~las~nA~n~~~~~~~Iie-R~tWk~~~~LvGH~~----p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIE-RGTWKVDKDLVGHSA----PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             eecchhhccCCcceeEEEe-cCCceeeeeeecCCC----ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            555432     24777887 555444556677754    8999999981     12            678999999999


Q ss_pred             EEEcCCCCCceee
Q 040274          219 ILVPRSSEPNFDS  231 (359)
Q Consensus       219 i~~~gs~~~~~~~  231 (359)
                      ||.++.--|-+-+
T Consensus       308 VW~T~~~RPl~vi  320 (942)
T KOG0973|consen  308 VWNTALPRPLFVI  320 (942)
T ss_pred             EEecCCCCchhhh
Confidence            9887666554433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=8.3e-20  Score=168.49  Aligned_cols=149  Identities=17%  Similarity=0.231  Sum_probs=128.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec-CCCEEEEec--CCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP-NGHLMATTG--KECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~--~d~~i~vwd~~~~~~~~  145 (359)
                      .|..+.|++|+.++++|+.|+.|.|||..+..++..+..|...|.+++|+| ...+||+|+  .|+.|++||..++..+.
T Consensus       303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence            799999999999999999999999999988899999999999999999999 667888876  59999999999999998


Q ss_pred             ee--cCCceeEEEcCCC--cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TL--TGHAKTLDFSQKG--LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~--~~~v~~~~~s~~g--l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .+  .+.|.++.|++..  ++++.  .++.|.||+... ......+.+|..    .|..++++|||..+++|+.|.++++
T Consensus       383 ~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~----RVl~la~SPdg~~i~t~a~DETlrf  457 (484)
T KOG0305|consen  383 SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTS----RVLYLALSPDGETIVTGAADETLRF  457 (484)
T ss_pred             ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcc----eeEEEEECCCCCEEEEecccCcEEe
Confidence            88  5679999999998  55443  357999999655 356667777765    8999999999999999888876666


Q ss_pred             EEc
Q 040274          220 LVP  222 (359)
Q Consensus       220 ~~~  222 (359)
                      |..
T Consensus       458 w~~  460 (484)
T KOG0305|consen  458 WNL  460 (484)
T ss_pred             ccc
Confidence            543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=6.6e-20  Score=173.94  Aligned_cols=184  Identities=13%  Similarity=0.209  Sum_probs=158.1

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      -.++|+|..-.++++-.                       +|..++|||+..+|++|+.|-.|++|+..+..++.++.+|
T Consensus        13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH   92 (1202)
T KOG0292|consen   13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH   92 (1202)
T ss_pred             cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence            57899999999998765                       9999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCc---
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSH---  180 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~---  180 (359)
                      -+.|..+.|++.-..++++|.|.+|+||+..+..++..+.||   |.|..|+|..  ++++|.|.+|+|||+..-..   
T Consensus        93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~  172 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK  172 (1202)
T ss_pred             cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence            999999999999999999999999999999999999999776   7899999966  88899999999999632100   


Q ss_pred             -c------------------------ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE----------------
Q 040274          181 -N------------------------YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI----------------  219 (359)
Q Consensus       181 -~------------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i----------------  219 (359)
                       +                        ...+.+|    ...|+-++|+|.-.+|++|++|..+.+                
T Consensus       173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             CCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence             0                        0112233    336888999999999999999998766                


Q ss_pred             ----------------EEcCCCCCceeeeccCCCCC
Q 040274          220 ----------------LVPRSSEPNFDSWVANPFET  239 (359)
Q Consensus       220 ----------------~~~gs~~~~~~~~~~~~~~~  239 (359)
                                      +++.+.|.+|++|+++--..
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence                            56788899999999874433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-20  Score=178.42  Aligned_cols=147  Identities=12%  Similarity=0.186  Sum_probs=126.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------------------------------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT--------------------------------------------------   98 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~--------------------------------------------------   98 (359)
                      .|++|.||+||+|||+|+.||.|+||.+..                                                  
T Consensus       269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~  348 (712)
T KOG0283|consen  269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV  348 (712)
T ss_pred             cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence            799999999999999999999999997643                                                  


Q ss_pred             ----------CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC---cEE
Q 040274           99 ----------SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG---LLA  163 (359)
Q Consensus        99 ----------~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g---l~~  163 (359)
                                .+|+..|.||.+.|..|+|+.++ +|++++.|.+|++|++....|+..|  ...|+|++|+|-.   +++
T Consensus       349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiS  427 (712)
T KOG0283|consen  349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFIS  427 (712)
T ss_pred             cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEee
Confidence                      01455677999999999999875 8899999999999999999999988  6789999999965   899


Q ss_pred             EEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      |+-|+.|+||++... +...-+..+.     .|++++|+|||.+.++|+.+|..++|.+
T Consensus       428 GSLD~KvRiWsI~d~-~Vv~W~Dl~~-----lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  428 GSLDGKVRLWSISDK-KVVDWNDLRD-----LITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             cccccceEEeecCcC-eeEeehhhhh-----hheeEEeccCCceEEEEEeccEEEEEEc
Confidence            999999999996543 4444444443     6999999999999999999999888544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.1e-19  Score=156.91  Aligned_cols=164  Identities=18%  Similarity=0.288  Sum_probs=143.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++.|-|.|.+|+++++                       .|..++.+.||.++++++.|.+|++|-+.++++...+..|
T Consensus       197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h  276 (406)
T KOG0295|consen  197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH  276 (406)
T ss_pred             eeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc
Confidence            88899999999999998                       6889999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecC----------C-----CEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCC
Q 040274          109 QGPVSALAFHPN----------G-----HLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGS  168 (359)
Q Consensus       109 ~~~v~~l~~~p~----------g-----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~  168 (359)
                      ..+|-+++|-|.          |     .++++++.|++|++||+.++.++.++.++   |..++|+|.|  ++++..|+
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk  356 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK  356 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence            999999999872          2     48999999999999999999999999554   8999999999  78888999


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ++++||+.+. .....+..|..    -|+++.|+.+-.++++|+-|-.+.+|
T Consensus       357 tlrvwdl~~~-~cmk~~~ah~h----fvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  357 TLRVWDLKNL-QCMKTLEAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             cEEEEEeccc-eeeeccCCCcc----eeEEEecCCCCceEEeccccceeeee
Confidence            9999997554 45555556644    79999999999988888777655554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=7.4e-20  Score=161.28  Aligned_cols=166  Identities=23%  Similarity=0.325  Sum_probs=135.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      ..+..+|.|.||++++.                         .+++.+|||||.+|.+|..||.|.|||+.++..+..|.
T Consensus       307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence            67788899999998876                         48999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--c--CCceeEEEcCCC--cEEEEcCCcEEEEcCCCC-C
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--T--GHAKTLDFSQKG--LLAVGTGSFAQILGDFSG-S  179 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~--~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~-~  179 (359)
                      +|+++|.+++|+.+|-+|++++.|+.|++||+|..+...++  .  ..+.+++|.+.|  +.+++.+=.|++++-.+. -
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            99999999999999999999999999999999998877777  2  258999999999  445544445555542111 1


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .....+..|.    +..+++.|.....+|++++.|.+.+++.
T Consensus       467 ~~~~~~~~~s----g~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  467 TEIKELADHS----GLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             eeeehhhhcc----cccceeeecccceEEeeccchhheEEee
Confidence            1222333343    3789999999999999999998766653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=160.13  Aligned_cols=172  Identities=16%  Similarity=0.140  Sum_probs=145.4

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC---------CC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT---------TS   99 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~---------~~   99 (359)
                      .+++-+|+|.+|+.|+-                       .|+|+.|+-|+.+|+||+.||.|.+|++.         +-
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            89999999999998843                       89999999999999999999999999853         34


Q ss_pred             cceEEeecCCCCeEEEEEecCC--CEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          100 ALLIKMLYHQGPVSALAFHPNG--HLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g--~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                      .++..|..|+-+|+++...+.|  .+++|+|.|.++++||+..+..+.++  +..+.+++.+|.+  +++|+.+|.|.+.
T Consensus       165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEee
Confidence            6788999999999999987753  47999999999999999999988877  6778999999998  8888899999988


Q ss_pred             cCCCCC---------------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          174 GDFSGS---------------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       174 d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ++....               .....+.+|.  .+..|+|++++-||..|++|+.||.+.||...|.
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~--~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHE--NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeecccc--CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            764432               1112233443  2348999999999999999999999999987765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.84  E-value=1.2e-19  Score=153.16  Aligned_cols=146  Identities=15%  Similarity=0.300  Sum_probs=127.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC----eee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY----EVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~----~~~  144 (359)
                      .++++.|+.++..+.+|+-|+.|.+||++.+..+..+.+|.++|+.+..+|+|.++.+-+.|.++++||++..    .++
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999864    346


Q ss_pred             EeecCC-------ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          145 QTLTGH-------AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       145 ~~~~~~-------v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ..+.++       ...++|+|++  +-+++.|..+++||. .....+..+++|.+    .|.++.|+|...+|++++.|.
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~-~~r~~lyklpGh~g----svn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT-TSRRILYKLPGHYG----SVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeec-ccccEEEEcCCcce----eEEEeeecCCCcEEEEeccCc
Confidence            666544       4678999999  667778999999994 44466777888866    899999999999999999998


Q ss_pred             eEEE
Q 040274          216 WSGI  219 (359)
Q Consensus       216 ~~~i  219 (359)
                      .+.+
T Consensus       331 ~i~l  334 (338)
T KOG0265|consen  331 TIYL  334 (338)
T ss_pred             eeEe
Confidence            6543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=8.7e-21  Score=163.70  Aligned_cols=153  Identities=15%  Similarity=0.251  Sum_probs=131.0

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeEe
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~~  146 (359)
                      .|.++.|+| ...+|++|..|++|.|||++++.++..+.. ...-+.++|+|.+-.|++|+.|..++.||++.. .++..
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV  267 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchh
Confidence            789999999 566888888999999999999999887643 555688999998888999999999999999975 46777


Q ss_pred             ecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          147 LTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       147 ~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +.+|   |.+++|||.|  ++++|.|.+|+||.+.. +.....|.+..+   +.|.|+.||.|.+|+++||+|+.+++|-
T Consensus       268 ~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-~~SRdiYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-GHSRDIYHTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             hcccceeEEEeccCCCcchhccccccceEEEeecCC-CcchhhhhHhhh---heeeEEEEeccccEEEecCCCcceeeee
Confidence            7665   5889999999  99999999999999544 466677766644   4699999999999999999999999998


Q ss_pred             cCCCC
Q 040274          222 PRSSE  226 (359)
Q Consensus       222 ~gs~~  226 (359)
                      .-+.+
T Consensus       344 a~Ase  348 (433)
T KOG0268|consen  344 AKASE  348 (433)
T ss_pred             cchhh
Confidence            76554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=3.5e-19  Score=157.35  Aligned_cols=164  Identities=23%  Similarity=0.401  Sum_probs=141.0

Q ss_pred             eEEEECCCCCEEEEec-c----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAG-R----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~-~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++.|+|++.++++++ .                      .+.++.|+|++.++++++.||.|.+||+.+++.+..+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  176 (289)
T cd00200          97 SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH  176 (289)
T ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence            7899999999998887 3                      5899999999999999988999999999999989899999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~~~  183 (359)
                      ...+.++.|+|++..+++++.|+.|.+||++.+..+..+   ...+.++.|+|++ +++++. ++.|.+||+... ....
T Consensus       177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~  255 (289)
T cd00200         177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQ  255 (289)
T ss_pred             ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEE
Confidence            999999999999999999999999999999988887776   3468999999998 555554 999999996543 4444


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .+..|.    ..|.+++|+|++.+|++++.||.+.+|
T Consensus       256 ~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         256 TLSGHT----NSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             EccccC----CcEEEEEECCCCCEEEEecCCCeEEec
Confidence            455443    379999999999999999999987776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=4.6e-19  Score=180.18  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=138.2

Q ss_pred             eEEEECC-CCCEEEEecc-----------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPS-SGRYMAVAGR-----------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~-----------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+++|+| ++.+|++++.                       .|++++|+| ++.+|++|+.||+|++||+.++..+..+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            5778876 5788888875                       699999997 78899999999999999999998888886


Q ss_pred             cCCCCeEEEEEe-cCCCEEEEecCCCeEEEEEcCCCe-eeEee---cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCC-
Q 040274          107 YHQGPVSALAFH-PNGHLMATTGKECKIKIWDLRKYE-VLQTL---TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGS-  179 (359)
Q Consensus       107 ~h~~~v~~l~~~-p~g~~l~s~~~d~~i~vwd~~~~~-~~~~~---~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~-  179 (359)
                      .+ ..|.++.|+ ++|.+|++|+.||.|++||+++.. ++..+   ...|+++.|.+.. +++++.|++|++||+.... 
T Consensus       616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~  694 (793)
T PLN00181        616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS  694 (793)
T ss_pred             cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence            54 679999995 579999999999999999998765 45555   3468999998555 8899999999999975421 


Q ss_pred             ----ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          180 ----HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       180 ----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                          ..+..+.+|.    ..+.+++|+|++.+|++|+.||.+.+|.....
T Consensus       695 ~~~~~~l~~~~gh~----~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        695 GINETPLHSFMGHT----NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             ccCCcceEEEcCCC----CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence                2334455553    37899999999999999999999999986543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=7.6e-20  Score=177.39  Aligned_cols=159  Identities=15%  Similarity=0.250  Sum_probs=131.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMW   94 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lw   94 (359)
                      |++++||||..+++||.                                     .|+|+.|+|||.+||+|+.|+.|.||
T Consensus        17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW   96 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW   96 (942)
T ss_pred             EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence            89999999999999993                                     89999999999999999999999999


Q ss_pred             eCCC------------------CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---Ccee
Q 040274           95 KPTT------------------SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKT  153 (359)
Q Consensus        95 d~~~------------------~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~  153 (359)
                      ....                  .++...+.+|.+.|..++|+|++.+|++++.|++|.+||..+++.+..+.+   .|-.
T Consensus        97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG  176 (942)
T KOG0973|consen   97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG  176 (942)
T ss_pred             eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccc
Confidence            8762                  125677889999999999999999999999999999999999988888854   5899


Q ss_pred             EEEcCCC--cEEEEcCCcEEEEcCCCCCccccccc---cccCCCCcceeEEEEccCCCEEEEEe
Q 040274          154 LDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYM---GNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       154 ~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      +.|.|-|  +.+-+.|++|.||.+..- .....+.   .+.. .......+.|||||.+|++..
T Consensus       177 vs~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~-~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  177 VSWDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESP-LTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eEECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCC-CcceeeecccCCCcCeecchh
Confidence            9999999  666778899999995431 1111111   1111 233588999999999999654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=3e-20  Score=166.43  Aligned_cols=165  Identities=19%  Similarity=0.244  Sum_probs=140.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.++|||+.|++||.                         .|.+++.|||.++.++++.||.|.|||+.+...+..|.
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq  548 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ  548 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence            67788999999999998                         68889999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCccc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHNY  182 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~~  182 (359)
                      +|++.+.||.+++||..|.||+.|.+|+.||++.+..+..+  ...|.++.++|++ +++++. ++.+.|..+. . .  
T Consensus       549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-k-p--  624 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-K-P--  624 (705)
T ss_pred             CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-C-c--
Confidence            99999999999999999999999999999999998766554  7789999999999 666665 5778777632 2 2  


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ..|.-|.  |.+.|.++.|.+.|+|+++.+.|..+..|-+
T Consensus       625 ~kyqlhl--heScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  625 EKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             cceeecc--cccEEEEEEecccCceeeecCchhhhhhccC
Confidence            2233332  4458999999999999999999987665433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=1.7e-19  Score=168.34  Aligned_cols=174  Identities=17%  Similarity=0.204  Sum_probs=152.1

Q ss_pred             HhhhhccceEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040274           44 KVEKNLVHILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        44 ~~e~ll~~~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~   99 (359)
                      .++.++..-.++|+++|.+|++...                        .+++++..||+.+|++++..+.+++|++.++
T Consensus        15 s~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg   94 (775)
T KOG0319|consen   15 SLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTG   94 (775)
T ss_pred             cccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccc
Confidence            3555556556999999999998654                        7899999999999999999999999999999


Q ss_pred             cceEEeec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC----cEEEEcCCcEE
Q 040274          100 ALLIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG----LLAVGTGSFAQ  171 (359)
Q Consensus       100 ~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g----l~~~~~d~~i~  171 (359)
                      ..+..+.. |.+||.-++|+|.|.++++||.|+.++|||+..+.+++.|.   |.|.++.|+|+-    +++++.|+.++
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~  174 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR  174 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence            99999997 99999999999999999999999999999999999999994   458999999987    57778899999


Q ss_pred             EEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          172 ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +||+............|..    .|+++.|++|+..+++++.|.++.+|.
T Consensus       175 vwnl~~~~tcl~~~~~H~S----~vtsL~~~~d~~~~ls~~RDkvi~vwd  220 (775)
T KOG0319|consen  175 VWNLNDKRTCLHTMILHKS----AVTSLAFSEDSLELLSVGRDKVIIVWD  220 (775)
T ss_pred             EEEcccCchHHHHHHhhhh----heeeeeeccCCceEEEeccCcEEEEee
Confidence            9997755444555666644    899999999999999999999887754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.83  E-value=4.7e-20  Score=165.65  Aligned_cols=160  Identities=18%  Similarity=0.226  Sum_probs=125.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------ceeEEEEcCCC-CEEEEEeCCCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------RTDLMRVNPFN-GVVSLGHSGGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------~v~~l~~sp~~-~~l~tg~~dg~v~lwd   95 (359)
                      .++.||+.|..|++.+.                                   .++|.+|+|.+ ..|+|++.||+++|||
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD  297 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence            88999999887765443                                   79999999965 5799999999999999


Q ss_pred             CCCCcc-eEEee-----cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--eeEee------cCCceeEEEcCCC-
Q 040274           96 PTTSAL-LIKML-----YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--VLQTL------TGHAKTLDFSQKG-  160 (359)
Q Consensus        96 ~~~~~~-~~~~~-----~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--~~~~~------~~~v~~~~~s~~g-  160 (359)
                      ++..+. +..+.     +..-++++++|+|+|.+||+|+.||.|.+||.++..  +...+      ...|+||.||++| 
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence            986532 33332     334578999999999999999999999999986532  22222      1258999999999 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                       |++-|.|+++.+||++...+.+....+..  ...+-+.++|||+..+|++|++
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~--t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLP--TPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhcCCC--ccCCCCccccCCCceEEEeccc
Confidence             88999999999999988766666554432  2335678999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.82  E-value=9.1e-19  Score=145.74  Aligned_cols=148  Identities=20%  Similarity=0.251  Sum_probs=129.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      +++.+.++.+|.+|++++.|.++.||-.-+|+.+.++.+|++.|+|+..+-+..+++||+.|.++++||+.+|+++.++ 
T Consensus        12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence            8999999999999999999999999998889999999999999999999999999999999999999999999999888 


Q ss_pred             -cCCceeEEEcCCC-cEEEEcC------CcEEEEcCCCCC------ccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          148 -TGHAKTLDFSQKG-LLAVGTG------SFAQILGDFSGS------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       148 -~~~v~~~~~s~~g-l~~~~~d------~~i~v~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                       +.+|..+.|+++| ++..+.|      +.|.+||++...      .+...++.+    ...++++-|.|-+.+|++|+.
T Consensus        92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~----~skit~a~Wg~l~~~ii~Ghe  167 (327)
T KOG0643|consen   92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP----DSKITSALWGPLGETIIAGHE  167 (327)
T ss_pred             cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC----ccceeeeeecccCCEEEEecC
Confidence             5678999999999 5555544      689999987542      223333333    347999999999999999999


Q ss_pred             CCeEEEE
Q 040274          214 MGWSGIL  220 (359)
Q Consensus       214 dg~~~i~  220 (359)
                      +|.+++|
T Consensus       168 ~G~is~~  174 (327)
T KOG0643|consen  168 DGSISIY  174 (327)
T ss_pred             CCcEEEE
Confidence            9998774

>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.82  E-value=2.3e-20  Score=126.05  Aligned_cols=79  Identities=57%  Similarity=0.933  Sum_probs=73.9

Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeeccCCCCChhhhhhHHHHHhhhccCCCeeeeCC
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNP  264 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~~~~~~~~~~~~e~ev~~ll~~~~~~~i~~~~  264 (359)
                      |+.|.. .+..|.++.|+|..++|.+|+..|+.+++++|+|++|++.++.|||++.+||+|+||++||+|+||++|++||
T Consensus         2 Ym~h~~-~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP   80 (80)
T PF08149_consen    2 YMTHLK-PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP   80 (80)
T ss_pred             CccccC-CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence            445532 6678999999999999999999999999999999999999999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.6e-19  Score=149.34  Aligned_cols=194  Identities=14%  Similarity=0.218  Sum_probs=142.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--  147 (359)
                      ..|+.||+.|.+|++|+.||.|.|||+.|...-..+.+|..+|++++||++|+.|+|++.|..|.+||+..|.+++.+  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            578999999999999999999999999999888889999999999999999999999999999999999999998877  


Q ss_pred             cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE-----
Q 040274          148 TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI-----  219 (359)
Q Consensus       148 ~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i-----  219 (359)
                      ..+|+.+.|+|..   .+++-.+..-.+-++..+...+.+...... ......+..|.+.|.++++|...|-+-+     
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d-ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD-LNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc-cccccccccccCCCCEEEEecCcceEEEEecch
Confidence            7889999999976   444444433333332222111111111110 1112334468999999999999986544     


Q ss_pred             --------------------------EEcCCCCCceeeeccCCCCC----hhhhhhHHHHHhhhccCCCeeeeCC
Q 040274          220 --------------------------LVPRSSEPNFDSWVANPFET----SKQRREKEVHSLLDKLLLETIMLNP  264 (359)
Q Consensus       220 --------------------------~~~gs~~~~~~~~~~~~~~~----~~~~~e~ev~~ll~~~~~~~i~~~~  264 (359)
                                                ++..+.|..|+.|+......    .....+..++.+.++++..-+.++.
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence                                      45566788888888763322    2333346677888888766555554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=3.3e-19  Score=158.26  Aligned_cols=161  Identities=17%  Similarity=0.221  Sum_probs=134.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------------ceeEEEEcCCCCEEEEEeCCCe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------------RTDLMRVNPFNGVVSLGHSGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------------~v~~l~~sp~~~~l~tg~~dg~   90 (359)
                      .+++++||+.+.++++.                                         .+.+++.||||.||++|+.|..
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~  225 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRH  225 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCce
Confidence            89999999999998876                                         5889999999999999999999


Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEE-
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVG-  165 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~-  165 (359)
                      |.||++.+.+.+..+.+|.+.|.+++|-...+-|++++.|+.|++|++.....+-++   ++.|.+|.....+ .++++ 
T Consensus       226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG  305 (479)
T ss_pred             EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc
Confidence            999999999999999999999999999888888999999999999999987766666   4447777777777 66655 


Q ss_pred             cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          166 TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .|+++++|++..  .....|.++.+    .+-|++|-.+ ..+++|+.+|.|.+
T Consensus       306 rDrT~rlwKi~e--esqlifrg~~~----sidcv~~In~-~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  306 RDRTVRLWKIPE--ESQLIFRGGEG----SIDCVAFIND-EHFVSGSDNGSIAL  352 (479)
T ss_pred             ccceeEEEeccc--cceeeeeCCCC----CeeeEEEecc-cceeeccCCceEEE
Confidence            899999999733  33444555533    6888888744 56888888888665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=5e-19  Score=157.14  Aligned_cols=181  Identities=12%  Similarity=0.233  Sum_probs=147.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      +++++|+||+||++|+.                       .|.+++|-....-+++++.|++|.+|+++....+.++.+|
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            89999999999999997                       7899999888888999999999999999998899999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-eeEee-cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-VLQTL-TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRY  185 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-~~~~~-~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~  185 (359)
                      .+.|.++....-++.+-+|+.|+++++|++..-. .+..- .+.+-|++|-.+. +++|+.+|.|.+|++.........-
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence            9999999988888888888899999999995432 22221 4578899998887 9999999999999976653332222


Q ss_pred             ccccCCC-------CcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeee
Q 040274          186 MGNSMVK-------GYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSW  232 (359)
Q Consensus       186 ~~~~~~~-------~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~  232 (359)
                      ..|...+       ...|++++..|..+++++|+.+|.+++|....+-..+.+.
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l  419 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL  419 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence            2332211       1279999999999999999999999999887765544433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.82  E-value=1.1e-19  Score=156.20  Aligned_cols=157  Identities=16%  Similarity=0.266  Sum_probs=129.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|.|+.+.  ...+++|..|.+|.|||.++..++..+.||++.|.|+.|.  .+.+++|+.|.+|++||..+++++.++-
T Consensus       199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh
Confidence            78888874  4589999999999999999999999999999999999984  5699999999999999999999999984


Q ss_pred             C---CceeEEEcCCCcEEEEcCCcEEEEcCCCCCc--cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE----
Q 040274          149 G---HAKTLDFSQKGLLAVGTGSFAQILGDFSGSH--NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI----  219 (359)
Q Consensus       149 ~---~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i----  219 (359)
                      +   .|..+.|+..-+++++.|.++.|||+..+..  ....+.+|..    .|+.+.|  +.+++++++.|.++.+    
T Consensus       275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA----aVNvVdf--d~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDF--DDKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh----heeeecc--ccceEEEecCCceEEEEecc
Confidence            4   4678888754499999999999999865531  1223455644    7888888  4458888888887665    


Q ss_pred             ------------------------EEcCCCCCceeeeccC
Q 040274          220 ------------------------LVPRSSEPNFDSWVAN  235 (359)
Q Consensus       220 ------------------------~~~gs~~~~~~~~~~~  235 (359)
                                              +++|+.|.+|++|++.
T Consensus       349 t~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  349 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             ceeeehhhhcccccceehhccCeEEEecCCCceEEEEecc
Confidence                                    5788888888888864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.82  E-value=8.7e-19  Score=152.24  Aligned_cols=164  Identities=15%  Similarity=0.189  Sum_probs=140.1

Q ss_pred             eEEEECCCCCEEEEecc------------------------------------------------ceeEEEEcCCCCEEE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------------------------RTDLMRVNPFNGVVS   83 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------------------------~v~~l~~sp~~~~l~   83 (359)
                      -++...++|..+++|+.                                                +|.++.|++ ...++
T Consensus       197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y  275 (423)
T KOG0313|consen  197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY  275 (423)
T ss_pred             eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence            67888899999999886                                                899999998 77999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe---eeEeec---CCceeEEEc
Q 040274           84 LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE---VLQTLT---GHAKTLDFS  157 (359)
Q Consensus        84 tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~---~~~~~~---~~v~~~~~s  157 (359)
                      +++.|.+|+.||+.++..+.++.+ ...++++.++|...+|++|+.|..|++||.+++.   +.+++-   ..|.++.|+
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws  354 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS  354 (423)
T ss_pred             eecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence            999999999999999998888866 6678999999999999999999999999999853   345553   458999999


Q ss_pred             CCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          158 QKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       158 ~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      |..   |++++.|+++.+||++....++..+.+|..    .|.++.|+ .+..|++|+.|..++|+-.
T Consensus       355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D----Kvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND----KVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc----eEEEEecc-CCceEEeccCcceEEEecc
Confidence            988   889999999999998887656666777644    89999997 4567888888887777643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.81  E-value=1.3e-19  Score=155.81  Aligned_cols=158  Identities=18%  Similarity=0.289  Sum_probs=133.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee---eE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV---LQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---~~  145 (359)
                      .|.|+.|.  ...|++|+.|.+|++||.++++++.++.+|...|..+.|+.  .+++|++.|.++.+||+.+...   .+
T Consensus       239 SVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rr  314 (499)
T KOG0281|consen  239 SVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRR  314 (499)
T ss_pred             cEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHH
Confidence            78888775  56999999999999999999999999999999999999974  4999999999999999987542   22


Q ss_pred             eecC---CceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE---
Q 040274          146 TLTG---HAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI---  219 (359)
Q Consensus       146 ~~~~---~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i---  219 (359)
                      .+.|   .|+.+.|+..-+++++.|.+|++|++.+ ...+.++.+|..    .|.|+.+  .|+++++|++|.++++   
T Consensus       315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st-~efvRtl~gHkR----GIAClQY--r~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNGHKR----GIACLQY--RDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             HHhhhhhheeeeccccceEEEecCCceEEEEeccc-eeeehhhhcccc----cceehhc--cCeEEEecCCCceEEEEec
Confidence            3334   4788888776688999999999999654 477888888864    6888876  7899999999999988   


Q ss_pred             -------------------------EEcCCCCCceeeeccCCC
Q 040274          220 -------------------------LVPRSSEPNFDSWVANPF  237 (359)
Q Consensus       220 -------------------------~~~gs~~~~~~~~~~~~~  237 (359)
                                               +++|+-|+.+++|+.+.-
T Consensus       388 ~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  388 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             cccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccc
Confidence                                     588999999999998743

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=165.99  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=132.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      ++.+++|+-+|.+++.|+.|-.|.+-+..+......+.+|.++|.++.|+|.+.+||+++.||.|++||+.++.+..++.
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988777762


Q ss_pred             C-----------CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          149 G-----------HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       149 ~-----------~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      +           .+..++|+|+|  +++.+.|+.|.+|+ +.+......+....  +...++++.|+|.|.|||+++-+|
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~-r~~we~~f~Lr~~~--~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS-RKGWELQFKLRDKL--SSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc-cCCceeheeecccc--cccceEEEEEcCCCcEEeeeccCC
Confidence            1           24778999996  99999999999999 45544444444332  333499999999999999999999


Q ss_pred             eEEEEEcCC
Q 040274          216 WSGILVPRS  224 (359)
Q Consensus       216 ~~~i~~~gs  224 (359)
                      .+.||..-+
T Consensus       255 ~I~vWnv~t  263 (933)
T KOG1274|consen  255 QILVWNVDT  263 (933)
T ss_pred             cEEEEeccc
Confidence            999998764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.81  E-value=2e-18  Score=149.28  Aligned_cols=170  Identities=15%  Similarity=0.231  Sum_probs=144.9

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      |+++++|+.+++++||.                       +|+|+.||.+|.+|+||+.+|.|.||...++.....+...
T Consensus        68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e  147 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE  147 (399)
T ss_pred             EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence            99999999999999987                       8999999999999999999999999999999988888766


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      -..+..+.|+|-+..|+.|+.||.+.+|.+.+....+.+.+   ++++-.|.|+|  ++++..||+|++||+.++ .++.
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~  226 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLH  226 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeE
Confidence            77899999999999999999999999999998766677754   47888999999  788888999999997665 3433


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .+.+.   .+....++.++..+..++.|+.++.+.+...+++
T Consensus       227 ~~~~~---e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg  265 (399)
T KOG0296|consen  227 KITQA---EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG  265 (399)
T ss_pred             Eeccc---ccCcCCccccccccceeEeccCCccEEEEccccc
Confidence            33322   1225778889999999999999998877666554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=5.7e-19  Score=148.82  Aligned_cols=180  Identities=14%  Similarity=0.195  Sum_probs=148.7

Q ss_pred             eEEEECC-CCCEEEEecc--------------------------------------ceeEEEEcC-CCCEEEEEeCCCeE
Q 040274           52 ILWILPS-SGRYMAVAGR--------------------------------------RTDLMRVNP-FNGVVSLGHSGGTV   91 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~--------------------------------------~v~~l~~sp-~~~~l~tg~~dg~v   91 (359)
                      .+|.+.+ .|+|+++|+.                                      .|..+.|-| |..+|.+++.|.++
T Consensus        47 NsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtl  126 (397)
T KOG4283|consen   47 NSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTL  126 (397)
T ss_pred             ceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceE
Confidence            6777766 7889998887                                      789999999 88899999999999


Q ss_pred             EEEeCCCCcceEEeecCCCCeEEEEEec---CCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC---cE
Q 040274           92 TMWKPTTSALLIKMLYHQGPVSALAFHP---NGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG---LL  162 (359)
Q Consensus        92 ~lwd~~~~~~~~~~~~h~~~v~~l~~~p---~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g---l~  162 (359)
                      .+||.+|.+....|.. .+.|++-+|+|   ...++|+|..|-.|++-|+.+|.+.+++.+|   |.++.|+|..   |+
T Consensus       127 KVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLa  205 (397)
T KOG4283|consen  127 KVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLA  205 (397)
T ss_pred             EEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEE
Confidence            9999999988888754 77899999998   3457888888999999999999999999654   8999999988   77


Q ss_pred             EEEcCCcEEEEcCCCCCcccccccccc----------CCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeee
Q 040274          163 AVGTGSFAQILGDFSGSHNYSRYMGNS----------MVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSW  232 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~  232 (359)
                      +++.||.|++||++........+..|.          ..|.+.|..++|+.+++++++++.|..+++|.+.+|..+.+-+
T Consensus       206 tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~  285 (397)
T KOG4283|consen  206 TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF  285 (397)
T ss_pred             ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence            888999999999876422222222111          1245589999999999999999999999999999998877655

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=153.58  Aligned_cols=167  Identities=15%  Similarity=0.194  Sum_probs=144.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++...|....+++||.                       .|+.+.|+|+...+++++.|-.|+||.............|
T Consensus       223 ~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h  302 (506)
T KOG0289|consen  223 TALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH  302 (506)
T ss_pred             eEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc
Confidence            66666666677888776                       7999999999999999999999999999888777888899


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC-----CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG-----HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      ..+|+.+..+|+|.||++++.|+++.+.|++++..+.....     .+++.+|+|||  +.++..|+.|.|||+... ..
T Consensus       303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~~  381 (506)
T KOG0289|consen  303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TN  381 (506)
T ss_pred             cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-cc
Confidence            99999999999999999999999999999999988776632     26999999999  556677999999997554 57


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ...+++|.+    +|..++|+.+|-||+++++|+.+.+|.--
T Consensus       382 ~a~Fpght~----~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  382 VAKFPGHTG----PVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             cccCCCCCC----ceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            777888866    99999999999999999999876666543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.81  E-value=5.2e-19  Score=159.03  Aligned_cols=168  Identities=13%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--  101 (359)
                      ..+++.|.|..|++|+-                            .|+++.|++.+..|++.+.....+|+|-...+.  
T Consensus       171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e  250 (641)
T KOG0772|consen  171 SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE  250 (641)
T ss_pred             EEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence            88999999999999987                            799999999999988888888888998653322  


Q ss_pred             -------e---EEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCe-eeEee--------cCCceeEEEcCCC-
Q 040274          102 -------L---IKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYE-VLQTL--------TGHAKTLDFSQKG-  160 (359)
Q Consensus       102 -------~---~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~-~~~~~--------~~~v~~~~~s~~g-  160 (359)
                             +   ...++|...++|.+|+|.. ..|+|++.||++++||+...+ .+..+        .-++++|+|+|+| 
T Consensus       251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~  330 (641)
T KOG0772|consen  251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK  330 (641)
T ss_pred             eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence                   1   2334899999999999954 469999999999999998643 23333        1247999999999 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCcccccc--ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRY--MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       +++++.||.|.+|+..........+  ..|.  .+..|+|+.||+||++|++-+.|+.+.+|.
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~--~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL--PGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             hhhhcccCCceeeeecCCcccccceEeeeccC--CCCceeEEEeccccchhhhccCCCceeeee
Confidence             6777889999999963322222111  2332  455899999999999999999999888753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=8e-19  Score=153.93  Aligned_cols=146  Identities=9%  Similarity=0.139  Sum_probs=120.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .|+-+.||++|++||+++.|.+..+|.+....   ...++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.+.+
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~  305 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH  305 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence            89999999999999999999999999876443   366778999999999999999999999999999999999999988


Q ss_pred             eec----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TLT----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .++    ..+.+++|.|||  +++|+.|++|..||+...  ......+.   ....|.+++.++||.++++.+.|..+++
T Consensus       306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~~~W~gv---r~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--ILGNWEGV---RDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc--hhhccccc---ccceeEEEEEcCCCcEEEEEecccceee
Confidence            883    347999999999  999999999999995322  22222222   2235888888888888877777766554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=143.35  Aligned_cols=173  Identities=17%  Similarity=0.232  Sum_probs=144.7

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      +-+.|+|+|.+++.++.                      .++.++|+-++.+|+.....|+|.|.....-+++.++.+|.
T Consensus       110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  110 INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            88999999999999987                      78999999888888888888999999999999999999999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      ....|+.|+|+|+|||+|+.|-.+.+||+...-|++.+   .-+|..+.||.+|  +++++.|..|-|=++.++.. +..
T Consensus       190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~-~~e  268 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR-VWE  268 (313)
T ss_pred             cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe-EEE
Confidence            99999999999999999999999999999987777777   4579999999999  66777888998888766643 333


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      ++.     .++...++|+|...+||.+++|..-   ......+++++|-
T Consensus       269 I~~-----~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG  309 (313)
T KOG1407|consen  269 IPC-----EGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFG  309 (313)
T ss_pred             eec-----cCCceeEEecCCCceeeEEecCCCC---ccccccceeEEec
Confidence            332     2378999999999999998887632   2233345666654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.7e-18  Score=147.13  Aligned_cols=140  Identities=22%  Similarity=0.346  Sum_probs=118.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCC--EEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGH--LMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~--~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      ++++++.+  +.++++|+.|.+|+|||+.+...+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|+.....++.+
T Consensus        45 sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s  122 (362)
T KOG0294|consen   45 SITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS  122 (362)
T ss_pred             ceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence            78888875  78999999999999999999988999999999999999998765  899999999999999999999888


Q ss_pred             ec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          147 LT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       147 ~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      +.   +.|+.++++|.|  -++++.|+.+++||+.++......-..+      ..+.+.|+|.|++++++..++.
T Consensus       123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~~i  191 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRNKI  191 (362)
T ss_pred             ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEeccEE
Confidence            84   459999999999  6788999999999987774443333333      2345888888888887777764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=1.4e-18  Score=147.37  Aligned_cols=127  Identities=17%  Similarity=0.304  Sum_probs=115.8

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+|.|+|....|++|+.                         +|.++.|+|.|.+|+.|....++++||++|.++-....
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            89999999999999988                         89999999999999999999999999999988765533


Q ss_pred             ---cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCC
Q 040274          107 ---YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDF  176 (359)
Q Consensus       107 ---~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~  176 (359)
                         .|++.|+++.+++.|++.+|++.||.|++||-.+++|+.++     ...|.+..|..+|  +++.|.|..+.+|.+.
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence               68999999999999999999999999999999999999999     2348999999999  8888899999999976


Q ss_pred             CC
Q 040274          177 SG  178 (359)
Q Consensus       177 ~~  178 (359)
                      ++
T Consensus       336 t~  337 (430)
T KOG0640|consen  336 TG  337 (430)
T ss_pred             CC
Confidence            54

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=7.7e-18  Score=142.48  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=105.4

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+|+|||....+++++.                          +|.+++|+.+|..+++|+.|+.+++||+.+++ +..+
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v  109 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQV  109 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeee
Confidence            88999995555554444                          89999999999999999999999999999995 5667


Q ss_pred             ecCCCCeEEEEEecCCC--EEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEcCCcEEEEcCCCC
Q 040274          106 LYHQGPVSALAFHPNGH--LMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~--~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~  178 (359)
                      ..|.++|.++.|-+...  .|+||+.|.+|+.||+|...++.++  +..+++++.-..-++.+..++.|.+|++.++
T Consensus       110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence            79999999999987666  7999999999999999999888887  5667766654443666677889999998654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=1.2e-18  Score=151.28  Aligned_cols=146  Identities=15%  Similarity=0.276  Sum_probs=115.1

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC--cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC---Ce
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS--ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK---YE  142 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~---~~  142 (359)
                      .|-.|+||| ...+|++||.||+|+|||++.+  ++......|.+.|+.++|+....+||+|+.||+++|||+|.   ++
T Consensus       259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~  338 (440)
T KOG0302|consen  259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ  338 (440)
T ss_pred             chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence            899999999 5679999999999999999987  23334479999999999999888999999999999999996   45


Q ss_pred             eeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCc---------------cccccccccCCCCcceeEEEE
Q 040274          143 VLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSH---------------NYSRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       143 ~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~  201 (359)
                      ++.+|   ..+|+++.|+|..   ++++|.|+.|.|||+.....               +...+.-|.+  ...|-.+.|
T Consensus       339 pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhW  416 (440)
T KOG0302|consen  339 PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHW  416 (440)
T ss_pred             cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--hhHhhhhee
Confidence            66666   6789999999976   88888999999999754211               1123333432  124777899


Q ss_pred             ccCC-CEEEEEeCCCe
Q 040274          202 RPYE-DVLGIGHSMGW  216 (359)
Q Consensus       202 sp~~-~~l~~g~~dg~  216 (359)
                      ++.- .+|++.+.||+
T Consensus       417 H~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  417 HRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccCCCCeEEEecccce
Confidence            9865 56777777775

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=1.1e-17  Score=138.89  Aligned_cols=163  Identities=12%  Similarity=0.190  Sum_probs=136.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|.-+|..|++|+.                         .|-.++|+| ....|++++.|.+|++||+++++++...
T Consensus        24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i  103 (313)
T KOG1407|consen   24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI  103 (313)
T ss_pred             eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence            89999999999999887                         688899988 6679999999999999999999998887


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      ....+ -.-++|+|+|.+++.++.|..|.+.|.++.+.+...  .-.+..++|+.++  ++.....|.|.|.... .-++
T Consensus       104 ~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkp  181 (313)
T KOG1407|consen  104 ETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKP  181 (313)
T ss_pred             eccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-cccc
Confidence            65444 456889999999999999999999999998887776  4457888998777  4444455999998744 3356


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      +..+..|..    ...|+.|+|+|+++|+|+.|..+++|
T Consensus       182 v~si~AH~s----nCicI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  182 VQSIKAHPS----NCICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             ccccccCCc----ceEEEEECCCCceEeeccccceeecc
Confidence            666777743    78999999999999999999988774

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.79  E-value=6.5e-18  Score=146.85  Aligned_cols=153  Identities=18%  Similarity=0.262  Sum_probs=127.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCcceEEeecCCCCeEEEEEecCCCE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT-------------------------TSALLIKMLYHQGPVSALAFHPNGHL  123 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~-------------------------~~~~~~~~~~h~~~v~~l~~~p~g~~  123 (359)
                      .|-+++.+++|..+++|+.|.+|.||+..                         ++.++.++.+|..+|.++.|++ ...
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v  273 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV  273 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence            89999999999999999999999999921                         2347788899999999999988 568


Q ss_pred             EEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc--ccccccccCCCCccee
Q 040274          124 MATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN--YSRYMGNSMVKGYQIG  197 (359)
Q Consensus       124 l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~v~  197 (359)
                      +++++.|.+|++||+.++..+.++  ....+|++++|..  +++++.|..|++||.+.+...  ...+.+|..    .|.
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n----wVs  349 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN----WVS  349 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh----hhh
Confidence            999999999999999999988877  4568999999987  777888999999998776432  345566644    999


Q ss_pred             EEEEccCC-CEEEEEeCCCeEEEEEcCCCC
Q 040274          198 KVSFRPYE-DVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       198 ~~~~sp~~-~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ++.|+|.. ..|++|+.|+.+.+|..-+..
T Consensus       350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             heecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            99999976 557889999998887655444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=5.7e-18  Score=158.46  Aligned_cols=183  Identities=15%  Similarity=0.247  Sum_probs=152.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC
Q 040274           52 ILWILPSSGRYMAVAGR--------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP  111 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~  111 (359)
                      .++++|.|...+++|+.                    .+.|..|-|.+.++++|..+|.+.+||+.+...+-+..+|.+.
T Consensus       377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga  456 (888)
T KOG0306|consen  377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA  456 (888)
T ss_pred             eEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence            67788888888888754                    6788999999999999999999999999999888888999999


Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEEcCC-----Cee----------eEeecCCceeEEEcCCC-cEEEE-cCCcEEEEc
Q 040274          112 VSALAFHPNGHLMATTGKECKIKIWDLRK-----YEV----------LQTLTGHAKTLDFSQKG-LLAVG-TGSFAQILG  174 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-----~~~----------~~~~~~~v~~~~~s~~g-l~~~~-~d~~i~v~d  174 (359)
                      +++++.+||+..++|||.|.+|++||..-     +..          +..+...|.|+.+|||| +++++ -|++|.||-
T Consensus       457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF  536 (888)
T ss_pred             eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence            99999999999999999999999999742     111          11225679999999999 66666 699999997


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------------EEcCC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------------LVPRS  224 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------------~~~gs  224 (359)
                      +.+- +..-.+.+|..    +|.|+..+||+..|++|+.|..+.|                              +.+.+
T Consensus       537 lDtl-KFflsLYGHkL----PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g  611 (888)
T KOG0306|consen  537 LDTL-KFFLSLYGHKL----PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG  611 (888)
T ss_pred             ecce-eeeeeeccccc----ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec
Confidence            5443 55566678877    9999999999999999999999887                              34555


Q ss_pred             CCCceeeeccCCCCC
Q 040274          225 SEPNFDSWVANPFET  239 (359)
Q Consensus       225 ~~~~~~~~~~~~~~~  239 (359)
                      -|+.++-|+...|+.
T Consensus       612 KD~kvKqWDg~kFe~  626 (888)
T KOG0306|consen  612 KDGKVKQWDGEKFEE  626 (888)
T ss_pred             CcceEEeechhhhhh
Confidence            677888888776655

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.79  E-value=7.3e-19  Score=157.64  Aligned_cols=162  Identities=19%  Similarity=0.305  Sum_probs=138.3

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      ..+.+|...+++.+||.                           .|.++.+.|||..|++|+.-.+|.|||+.+..+...
T Consensus       423 cAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik  502 (705)
T KOG0639|consen  423 CAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK  502 (705)
T ss_pred             EEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchh
Confidence            67788999999999998                           688899999999999999999999999987655433


Q ss_pred             --eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          105 --MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       105 --~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                        +....-.+++++.+||.++.++|+.||+|.|||+.+...++.|.++   +.||.++++|  +.+++-|++|+.||++.
T Consensus       503 aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  503 AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence              3333456788999999999999999999999999999999999665   7999999999  99999999999999876


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      +...    ..|.  ..+.|.++.++|+++||++|-.++.+.|
T Consensus       583 grql----qqhd--F~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  583 GRQL----QQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             hhhh----hhhh--hhhhheecccCCCccceeeecccCcEEE
Confidence            6332    3332  3347999999999999999999998776

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=5e-18  Score=139.02  Aligned_cols=147  Identities=18%  Similarity=0.215  Sum_probs=127.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      +|.++.|+-+|+|.++++.|.+|++|++-.+.++.++.+|...|..++.+.|...|++|+.|..|.+||+.+|+.++.+.
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r   98 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR   98 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCC-ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          149 GH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGS-HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       149 ~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +|   |+.+.|+.+.  +++++.|.++++||-+... ++++.+....    ..|.++..+  +..|+.|+.||.++.|.
T Consensus        99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~----D~V~Si~v~--~heIvaGS~DGtvRtyd  171 (307)
T KOG0316|consen   99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK----DGVSSIDVA--EHEIVAGSVDGTVRTYD  171 (307)
T ss_pred             cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc----CceeEEEec--ccEEEeeccCCcEEEEE
Confidence            65   8999999988  8888999999999976542 3333333332    268888874  55788999999887753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3e-17  Score=139.32  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=128.3

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .++.|+|.+..|+.++.                      ++.+++|.++ ..+++|+.||.|+++|++++.. ..+..|.
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~   94 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHD   94 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCC
Confidence            78888888777776665                      8999999884 4788999999999999998764 4455899


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcccccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMG  187 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~  187 (359)
                      .+|.|+.+++....+++||.|++|++||.+......++  ...|.++..+.+-|+.++.+..+.+||+++..........
T Consensus        95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen   95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccc
Confidence            99999999998889999999999999999975555555  4468888877666888999999999998876444322222


Q ss_pred             ccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          188 NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       188 ~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .   ....+.|+++-|++.-.++++-+|.+.+
T Consensus       175 ~---lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  175 S---LKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             c---ceeEEEEEEEecCCCceEEEeecceEEE
Confidence            1   3346777888887777777777776555

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.79  E-value=2.5e-18  Score=152.61  Aligned_cols=151  Identities=16%  Similarity=0.242  Sum_probs=124.8

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~  139 (359)
                      .-.+|+|++ ....|++|+.|++|++||+...       .+...+.+|...|..++|+| +..+|++++.|+.+.|||+|
T Consensus       179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence            367899999 4568999999999999998743       24566789999999999999 56789999999999999999


Q ss_pred             C--CeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEE
Q 040274          140 K--YEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGI  210 (359)
Q Consensus       140 ~--~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~  210 (359)
                      +  .++....   .+.++|++|+|-+   ++++|.|++|.+||+++....+..+.+|..    .|.++.|+|+. .+|++
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d----ev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED----EVFQVEWSPHNETVLAS  334 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc----ceEEEEeCCCCCceeEe
Confidence            5  3333333   4669999999987   667778999999999888777777777765    89999999965 78899


Q ss_pred             EeCCCeEEEEEcC
Q 040274          211 GHSMGWSGILVPR  223 (359)
Q Consensus       211 g~~dg~~~i~~~g  223 (359)
                      ++.|+.+.+|...
T Consensus       335 Sg~D~rl~vWDls  347 (422)
T KOG0264|consen  335 SGTDRRLNVWDLS  347 (422)
T ss_pred             cccCCcEEEEecc
Confidence            9999998887543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.78  E-value=1.4e-17  Score=138.71  Aligned_cols=167  Identities=14%  Similarity=0.183  Sum_probs=140.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ..+.+..+|.+|.+|+.                       .|+|++.+.+...+++|+.|.++++||+.+|+.+..+.. 
T Consensus        14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-   92 (327)
T KOG0643|consen   14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-   92 (327)
T ss_pred             ceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-
Confidence            67788889998888886                       899999999999999999999999999999999988864 


Q ss_pred             CCCeEEEEEecCCCEEEEecC-----CCeEEEEEcCC-------CeeeEee---cCCceeEEEcCCC--cEEEEcCCcEE
Q 040274          109 QGPVSALAFHPNGHLMATTGK-----ECKIKIWDLRK-------YEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQ  171 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~-----d~~i~vwd~~~-------~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~  171 (359)
                      ..+|..+.|+++|++++.+..     .+.|.++|++.       .+++..+   ...++.+-|+|-+  +++|..+|.|.
T Consensus        93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is  172 (327)
T KOG0643|consen   93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS  172 (327)
T ss_pred             CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence            778999999999998777654     36799999983       4456655   3568999999999  88899999999


Q ss_pred             EEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          172 ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +||..++...+.....|..    .|+.+.|+||..++++|+.|....+|...
T Consensus       173 ~~da~~g~~~v~s~~~h~~----~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  173 IYDARTGKELVDSDEEHSS----KINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEEcccCceeeechhhhcc----ccccccccCCcceEEecccCccceeeecc
Confidence            9998877666665555543    89999999999999999988876666543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=7.1e-18  Score=150.89  Aligned_cols=164  Identities=15%  Similarity=0.236  Sum_probs=132.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|.+++|-.||.++++|+..|.|+|||..+...+..+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+......+
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l  149 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL  149 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence            79999999999999999999999999988777888899999999999999955 55778888999999999988765455


Q ss_pred             c---CCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE--
Q 040274          148 T---GHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI--  219 (359)
Q Consensus       148 ~---~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i--  219 (359)
                      .   +.|.|.+|+|-.   +++||+||.|++||++.....+ .-..    |+.+|.++.|-|.|..+++++.+.. .+  
T Consensus       150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-~eln----hg~pVe~vl~lpsgs~iasAgGn~v-kVWD  223 (487)
T KOG0310|consen  150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-VELN----HGCPVESVLALPSGSLIASAGGNSV-KVWD  223 (487)
T ss_pred             cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-EEec----CCCceeeEEEcCCCCEEEEcCCCeE-EEEE
Confidence            4   458999999965   8899999999999976653222 2223    4459999999999999998876643 33  


Q ss_pred             -----------------------------EEcCCCCCceeeeccCCCC
Q 040274          220 -----------------------------LVPRSSEPNFDSWVANPFE  238 (359)
Q Consensus       220 -----------------------------~~~gs~~~~~~~~~~~~~~  238 (359)
                                                   +++++-|+.+++|+...|.
T Consensus       224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE
Confidence                                         4566777888888765543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.78  E-value=4.1e-18  Score=149.54  Aligned_cols=173  Identities=17%  Similarity=0.223  Sum_probs=134.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.|-++...|++||.                         .|+++.|.+++.++++++.|+.+++|+++..+...++.
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs  258 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS  258 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc
Confidence            77788888888999887                         69999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC---------------------------------------CeeeEee
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK---------------------------------------YEVLQTL  147 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~---------------------------------------~~~~~~~  147 (359)
                      +|++.|+++.|.-....+++|+.|.+|++||+..                                       ..++.+.
T Consensus       259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv  338 (459)
T KOG0288|consen  259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSV  338 (459)
T ss_pred             ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEe
Confidence            9999999998876555466666666666666543                                       3333333


Q ss_pred             --cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          148 --TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       148 --~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        .+.|+++..+++|  +++++.|.++.++|+++. ....++.......+..++.+.|||++.|+++|+.||.+.||...
T Consensus       339 ~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  339 PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             ecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence              2346788888888  778888888888886554 44444443322234468899999999999999999998888765


Q ss_pred             CC
Q 040274          224 SS  225 (359)
Q Consensus       224 s~  225 (359)
                      ++
T Consensus       418 tg  419 (459)
T KOG0288|consen  418 TG  419 (459)
T ss_pred             Cc
Confidence            54

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=3.6e-19  Score=165.79  Aligned_cols=148  Identities=20%  Similarity=0.375  Sum_probs=133.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      +|-|+.|+++..+|++|+.+|+|++||+...+.+.++.||...+.++.|+|-+.|+++++.|+.+++||++...|.+.+.
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999888999996


Q ss_pred             CC---ceeEEEcCCC-cE-EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          149 GH---AKTLDFSQKG-LL-AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       149 ~~---v~~~~~s~~g-l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ++   +.++.|+|+| ++ .++.|.++.|||... +.....|..|.+    .+.++.|+|..-.+++|+.|+++++|.
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~----~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEG----KVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccc----cccccccCchhhhhccCCCCceeeeec
Confidence            65   5788999999 54 455669999999544 477778888866    899999999999999999999998874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=149.04  Aligned_cols=164  Identities=18%  Similarity=0.252  Sum_probs=139.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC--------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK--------  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~--------  140 (359)
                      .|+|++-+|+|.+++.|.-.|.+++|.+.+|..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++..        
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence            699999999999999998999999999999999999999999999999999999999999999999998642        


Q ss_pred             -CeeeEeecCC---ceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          141 -YEVLQTLTGH---AKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       141 -~~~~~~~~~~---v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                       -.+++.|.+|   |+++...+.|    ++++|.|.++++||+..+ ..+..+...     ..+.+++.+|-++.+++|+
T Consensus       163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp-----~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFP-----SSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecC-----CcceeEEEcccccEEEecC
Confidence             3456667544   7888887765    899999999999997655 343333333     2699999999999999999


Q ss_pred             CCCeEEE------------------------------------------------EEcCCCCCceeeeccCCCC
Q 040274          213 SMGWSGI------------------------------------------------LVPRSSEPNFDSWVANPFE  238 (359)
Q Consensus       213 ~dg~~~i------------------------------------------------~~~gs~~~~~~~~~~~~~~  238 (359)
                      .+|.+.+                                                +++|+.|+.+.+|+....+
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            9997654                                                7889999999999975433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=2.7e-18  Score=158.27  Aligned_cols=167  Identities=19%  Similarity=0.244  Sum_probs=139.3

Q ss_pred             eEEEEC-CCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Q 040274           52 ILWILP-SSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS--   99 (359)
Q Consensus        52 ~~l~~s-pdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~--   99 (359)
                      +.+..+ |+++||++||+                             .|+.+....+++.|+++|.|-+|.+|+...+  
T Consensus        28 ~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   28 KALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             hhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence            344444 67888999998                             6788888888889999999999999999877  


Q ss_pred             cceEEeecCCCCeEEEEE-ecCCCEEEEecCCCeEEEEEcCCC--eeeEee------------cCCceeEEEcCCC--cE
Q 040274          100 ALLIKMLYHQGPVSALAF-HPNGHLMATTGKECKIKIWDLRKY--EVLQTL------------TGHAKTLDFSQKG--LL  162 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~-~p~g~~l~s~~~d~~i~vwd~~~~--~~~~~~------------~~~v~~~~~s~~g--l~  162 (359)
                      -++.++..|.+.|.|+++ .++..++|+||.|+.|.+||+.++  +.+.++            ..++++++-++.|  ++
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            577788899999999999 788889999999999999999987  233333            1347899999999  77


Q ss_pred             EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          163 AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +|+..+.+++||.++. ..+..+.+|..    .|.++..++||..++++++||+|++|.-|
T Consensus       188 sGgtek~lr~wDprt~-~kimkLrGHTd----NVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTC-KKIMKLRGHTD----NVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             ecCcccceEEeccccc-cceeeeecccc----ceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            8888999999997665 55556667765    79999999999999999999999986443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.76  E-value=2.5e-17  Score=144.68  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=119.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|+.|..+  ...+++|+.|+.|++||+++..+......|. .|+++..+++|..|.+++.|.++.+.|+++.+..+.+.
T Consensus       304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s  380 (459)
T KOG0288|consen  304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS  380 (459)
T ss_pred             cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence            44445444  4467889999999999999999888887755 89999999999999999999999999999998888872


Q ss_pred             -------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          149 -------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       149 -------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                             ...+.+.|||++  +++||.||.|+||++.++ +....+.....  ...|++++|+|.|..|++++.++.+.+
T Consensus       381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s--~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTS--NAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             ccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCC--CcceEEEEEcCCCchhhcccCCcceEe
Confidence                   236889999999  667888999999996554 44444433321  225999999999999999999998887


Q ss_pred             E
Q 040274          220 L  220 (359)
Q Consensus       220 ~  220 (359)
                      |
T Consensus       458 W  458 (459)
T KOG0288|consen  458 W  458 (459)
T ss_pred             c
Confidence            7

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=144.06  Aligned_cols=149  Identities=17%  Similarity=0.261  Sum_probs=114.6

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcce---EEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCC--
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALL---IKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKY--  141 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~--  141 (359)
                      .-..|+||| ....|++|..-+.|++|.+.++...   ..|.+|+..|-.|+|||.. ..|++||.||+|+|||+|.+  
T Consensus       213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             cceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence            457899999 3446889988899999999887543   3466899999999999954 57899999999999999987  


Q ss_pred             -eeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCC--CccccccccccCCCCcceeEEEEccCC-CEEEEEeC
Q 040274          142 -EVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSG--SHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHS  213 (359)
Q Consensus       142 -~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~  213 (359)
                       .++.+-  .+.|+.|.|+.+-  |++|+.+|++.|||++.-  +.++..+..|..    +|+|+.|+|.. ..|++++.
T Consensus       293 ~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~----pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  293 KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA----PITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC----CeeEEEeccccCceEEeccC
Confidence             333332  5679999999887  666777899999998653  344556666654    99999999965 55666666


Q ss_pred             CCeEEEEE
Q 040274          214 MGWSGILV  221 (359)
Q Consensus       214 dg~~~i~~  221 (359)
                      |..+.||.
T Consensus       369 D~QitiWD  376 (440)
T KOG0302|consen  369 DNQITIWD  376 (440)
T ss_pred             CCcEEEEE
Confidence            66555554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2e-16  Score=134.83  Aligned_cols=160  Identities=22%  Similarity=0.301  Sum_probs=126.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC--eeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY--EVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~--~~~~~  146 (359)
                      .|++|+.+|-+..+++++.|++|++||+++.++...+.....  ..++|+|+|-++|++.....|++||+|+.  .+..+
T Consensus       102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t  179 (311)
T KOG1446|consen  102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT  179 (311)
T ss_pred             eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence            899999999889999999999999999998888777654333  45789999999999988889999999974  35555


Q ss_pred             e--c----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          147 L--T----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       147 ~--~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      +  .    ...+.+.|||+|  ++.+...+.+++.|...+ .....+..+.. .+..-.+.+|+||+.++++|+.||.+.
T Consensus       180 f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~-~~~~~~~a~ftPds~Fvl~gs~dg~i~  257 (311)
T KOG1446|consen  180 FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPN-AGNLPLSATFTPDSKFVLSGSDDGTIH  257 (311)
T ss_pred             EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccC-CCCcceeEEECCCCcEEEEecCCCcEE
Confidence            5  1    236899999999  777777889999995544 56666666644 222336789999999999999999999


Q ss_pred             EEEcCCCCCceeeec
Q 040274          219 ILVPRSSEPNFDSWV  233 (359)
Q Consensus       219 i~~~gs~~~~~~~~~  233 (359)
                      +|.-.++.. +-.|.
T Consensus       258 vw~~~tg~~-v~~~~  271 (311)
T KOG1446|consen  258 VWNLETGKK-VAVLR  271 (311)
T ss_pred             EEEcCCCcE-eeEec
Confidence            998754433 34444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.7e-16  Score=135.18  Aligned_cols=164  Identities=20%  Similarity=0.359  Sum_probs=120.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCC--EEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNG--VVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~--~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++++  +|.|+++|+.                       .|+++.|.+.-.  .|++|+.||.|.+|+......+.++.
T Consensus        47 tavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK  124 (362)
T KOG0294|consen   47 TALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK  124 (362)
T ss_pred             eEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence            44444  6899999987                       899999988654  89999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE--eecCCc---------------------------------
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ--TLTGHA---------------------------------  151 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~v---------------------------------  151 (359)
                      +|.+.|+.++++|.|++.++.+.|+.+++||+-.|+.-.  .+....                                 
T Consensus       125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~  204 (362)
T KOG0294|consen  125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE  204 (362)
T ss_pred             ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence            999999999999999999999999999999987664322  112222                                 


Q ss_pred             -------eeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEE--ccCCCEEEEEeCCCeEEEEE
Q 040274          152 -------KTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF--RPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       152 -------~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~g~~dg~~~i~~  221 (359)
                             .|+.|...+ +++|+.++.|.+||... ..+...+..|..    +|-++.+  .|++.+|+++++||.|.||.
T Consensus       205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~----RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHEN----RVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             hhccccceeeeecCCceEEEecCCceEEEeccCC-Cccceeeecchh----heeeeEEEecCCceEEEEeccCceEEEEE
Confidence                   233333333 55555566667776332 344555555543    6666653  35667788888888777775


Q ss_pred             c
Q 040274          222 P  222 (359)
Q Consensus       222 ~  222 (359)
                      -
T Consensus       280 ~  280 (362)
T KOG0294|consen  280 I  280 (362)
T ss_pred             c
Confidence            4

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=3.2e-17  Score=145.18  Aligned_cols=154  Identities=12%  Similarity=0.143  Sum_probs=129.8

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCC---ee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKY---EV  143 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~---~~  143 (359)
                      .|.+|+|+. ..+.|++||.|.+|.+||+.+++|..++..|.+.|.++.|+| .+.+|++|+.|++|.+.|.|..   ..
T Consensus       245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK  324 (463)
T ss_pred             HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence            456788887 456899999999999999999999999999999999999999 5678999999999999999942   23


Q ss_pred             eEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEE
Q 040274          144 LQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGI  219 (359)
Q Consensus       144 ~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i  219 (359)
                      ...+.+.|-.+.|.|..   ++++..||+|+-+|++..+.++..+..|..    .|.++++++.- .+|++++.++.+.+
T Consensus       325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~----~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD----EISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC----CcceEEecCCCCcceeeccccceEEE
Confidence            44557889999999987   777778999999999988888888888865    89999999865 56788888888888


Q ss_pred             EEcCCCC
Q 040274          220 LVPRSSE  226 (359)
Q Consensus       220 ~~~gs~~  226 (359)
                      |.....+
T Consensus       401 w~~~~~~  407 (463)
T KOG0270|consen  401 WKFDVDS  407 (463)
T ss_pred             EeecCCC
Confidence            7654433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.9e-17  Score=139.22  Aligned_cols=158  Identities=19%  Similarity=0.258  Sum_probs=110.1

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCC---CC-----cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC--
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPT---TS-----ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK--  140 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~---~~-----~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~--  140 (359)
                      +..+.||+|.+|++++..-.|.+|.+-   .|     ..+..+.+|...|.+++|+|+...++|.+.||++++||++-  
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            444556666666666665566666542   12     13456779999999999999999999999999999999853  


Q ss_pred             --C---eeeEee-------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          141 --Y---EVLQTL-------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       141 --~---~~~~~~-------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                        +   ..+.+.       .+....+..||+| .++.+.+..+.+|...++ .....+...   |+..|.+++|+|+|++
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g-~~~~~~e~~---h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDG-KDYPELEDI---HSTTISSISYSSDGKY  387 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccC-ccchhHHHh---hcCceeeEEecCCCcE
Confidence              1   122222       1234589999999 999999999999986654 444444332   4558999999999999


Q ss_pred             EEEEeCCCeEEEEE-cCCCCCceeeec
Q 040274          208 LGIGHSMGWSGILV-PRSSEPNFDSWV  233 (359)
Q Consensus       208 l~~g~~dg~~~i~~-~gs~~~~~~~~~  233 (359)
                      ++++++. .++++- +...+..+..|+
T Consensus       388 ~atcGdr-~vrv~~ntpg~~~~V~~~~  413 (420)
T KOG2096|consen  388 IATCGDR-YVRVIRNTPGWHSRVVKLN  413 (420)
T ss_pred             Eeeecce-eeeeecCCCchhhHHHHhh
Confidence            9987754 455554 333444455554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.4e-17  Score=156.39  Aligned_cols=162  Identities=16%  Similarity=0.265  Sum_probs=133.6

Q ss_pred             eEEEECCCC-CEEEEecc-----------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-cceEEe
Q 040274           52 ILWILPSSG-RYMAVAGR-----------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-ALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg-~~l~~~~~-----------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-~~~~~~  105 (359)
                      .+++|++-. .+|++|+.                       .|..+.|+| .+..|++++.+|.+++||++.. .+...+
T Consensus       137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~  216 (839)
T KOG0269|consen  137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL  216 (839)
T ss_pred             eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence            788888754 45556655                       899999999 7889999999999999999854 667788


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--eeEee--cCCceeEEEcCCC---cEEEEc--CCcEEEEcCC
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--VLQTL--TGHAKTLDFSQKG---LLAVGT--GSFAQILGDF  176 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--~~~~~--~~~v~~~~~s~~g---l~~~~~--d~~i~v~d~~  176 (359)
                      .+|.++|.|+.|+|++.+|||||.|++|+|||+.++.  ++.++  -.++.++.|-|..   |.+++.  |-.|+|||++
T Consensus       217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            8999999999999999999999999999999998754  35555  4578999999987   555543  6799999998


Q ss_pred             CCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeE
Q 040274          177 SGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWS  217 (359)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~  217 (359)
                      ...-+...+..|..    .++.++|.. |-..|.+++.||++
T Consensus       297 RPYIP~~t~~eH~~----~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  297 RPYIPYATFLEHTD----SVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             cccccceeeeccCc----cccceeccCCCceeeEeecCccHH
Confidence            88777777877764    788899976 44678889999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.6e-17  Score=152.06  Aligned_cols=150  Identities=17%  Similarity=0.269  Sum_probs=126.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-  146 (359)
                      .|+++.|+++|.+|++|..+|.|.|||..+...+..+.+ |...|.+++|+  +..+.+|+.|+.|..+|++..+.+.. 
T Consensus       219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~  296 (484)
T KOG0305|consen  219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST  296 (484)
T ss_pred             ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh
Confidence            799999999999999999999999999999888888888 99999999998  66899999999999999998765444 


Q ss_pred             e---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCEEEEEeC--CCeEE
Q 040274          147 L---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIGHS--MGWSG  218 (359)
Q Consensus       147 ~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~~--dg~~~  218 (359)
                      +   ...|..+.|++|+  +++++.|+.+.|||. ....+...+..|..    .|-.++|||. ..+||+|+.  |+.+.
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~a----AVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEPKFTFTEHTA----AVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccC-CCccccEEEeccce----eeeEeeeCCCccCceEEcCCCcccEEE
Confidence            4   3458999999999  778889999999996 44456667777765    8999999995 477887764  66777


Q ss_pred             EEEcCCC
Q 040274          219 ILVPRSS  225 (359)
Q Consensus       219 i~~~gs~  225 (359)
                      +|.+..+
T Consensus       372 fwn~~~g  378 (484)
T KOG0305|consen  372 FWNTNTG  378 (484)
T ss_pred             EEEcCCC
Confidence            7765544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=150.42  Aligned_cols=163  Identities=15%  Similarity=0.202  Sum_probs=140.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|.++++..-+.++++|+.|.++++||..+|.+...+.+|.+.|.++...+  .++++|+.|.+|++||+.++.+++.+.
T Consensus       251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~  328 (537)
T KOG0274|consen  251 GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR  328 (537)
T ss_pred             CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec
Confidence            899999987788999999999999999999999999999999999998754  578889999999999999999998885


Q ss_pred             ---CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------
Q 040274          149 ---GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------  219 (359)
Q Consensus       149 ---~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------  219 (359)
                         ++|.++.++.+-+++++.|++|.|||+. ....+..+.+|.+    .|.++.+.+. ..+++|+.|+.+.+      
T Consensus       329 ~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~----~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  329 GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTG----RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             cccccEEEEEecCCEEEEEecCceEEEEEhh-hceeeeeecCCcc----eEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence               4588999883339999999999999976 4477777777765    8999988665 89999999998776      


Q ss_pred             -----------------------EEcCCCCCceeeeccCCCCC
Q 040274          220 -----------------------LVPRSSEPNFDSWVANPFET  239 (359)
Q Consensus       220 -----------------------~~~gs~~~~~~~~~~~~~~~  239 (359)
                                             +++++.|+.+++|+.+..+.
T Consensus       403 ~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  403 RKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             hhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence                                   56777788999998776654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=8.6e-17  Score=137.06  Aligned_cols=149  Identities=11%  Similarity=0.194  Sum_probs=130.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~~~  147 (359)
                      .|.++.|-..|..+++++.|.+..+||+.++.++..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|
T Consensus       274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence            6888889889999999999999999999999999999999999999999999999999999999999999943 345556


Q ss_pred             cC---CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          148 TG---HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       148 ~~---~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .|   .|+++.|.-+. +++++.|.+|.|||+.+...++.++....     +++.++.+-.+.+|+.-+++..+++|.-
T Consensus       354 QGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-----~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-----PANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             cccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC-----ccceeEeecCCceEEeccCCceEEEEec
Confidence            55   48999999888 99999999999999988766666665543     7999999998889999888887777654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.2e-16  Score=130.07  Aligned_cols=171  Identities=12%  Similarity=0.159  Sum_probs=131.3

Q ss_pred             eEEEECC--CCCEEEEecc-------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCC---
Q 040274           52 ILWILPS--SGRYMAVAGR-------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTS---   99 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~-------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~---   99 (359)
                      +-++|..  -|.+||+++.                         .|++++|.|  .|-.|++++.||.|.|.+.++.   
T Consensus        60 wqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w  139 (299)
T KOG1332|consen   60 WKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW  139 (299)
T ss_pred             eEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc
Confidence            7777743  7999998886                         899999998  4668999999999999988754   


Q ss_pred             cceEEeecCCCCeEEEEEecC---C-----------CEEEEecCCCeEEEEEcCCCee--eEee---cCCceeEEEcCCC
Q 040274          100 ALLIKMLYHQGPVSALAFHPN---G-----------HLMATTGKECKIKIWDLRKYEV--LQTL---TGHAKTLDFSQKG  160 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~---g-----------~~l~s~~~d~~i~vwd~~~~~~--~~~~---~~~v~~~~~s~~g  160 (359)
                      .......+|.-.|++++|.|.   |           ..|++||.|..|+||+...+.-  -.++   .+.|..++|.|.-
T Consensus       140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence            222345589999999999995   4           4699999999999999987632  2223   4558999999974


Q ss_pred             ------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          161 ------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       161 ------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                            +++++.||+|.||-..........-.-+.  ....+++++||+.|++|++++.|+.+.+|....
T Consensus       220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence                  78899999999997543322222222221  223699999999999999999999888887643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=1e-16  Score=148.08  Aligned_cols=146  Identities=16%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             ceeEEEE-cCCCCEEEEEeCCCeEEEEeCCCCcc----------eEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEE
Q 040274           69 RTDLMRV-NPFNGVVSLGHSGGTVTMWKPTTSAL----------LIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIW  136 (359)
Q Consensus        69 ~v~~l~~-sp~~~~l~tg~~dg~v~lwd~~~~~~----------~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vw  136 (359)
                      .|.|+++ -+++..+|+|+-|+.|.+||++++..          ...+. ++...|++++.++.|..+++|+..+.|++|
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW  198 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence            7999999 77888999999999999999997722          22233 788899999999999999999999999999


Q ss_pred             EcCCCeeeEeecCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          137 DLRKYEVLQTLTGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       137 d~~~~~~~~~~~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      |.++.+.+..+.||   |.++-.++||  ++++++||+|++||+... ..+.++..|..    .|+++..+|+=.++++|
T Consensus       199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e----~VWaL~~~~sf~~vYsG  273 (735)
T KOG0308|consen  199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKE----GVWALQSSPSFTHVYSG  273 (735)
T ss_pred             ccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccC----ceEEEeeCCCcceEEec
Confidence            99999888888665   8899999999  999999999999996443 66777777754    69999999999999999


Q ss_pred             eCCCeEEE
Q 040274          212 HSMGWSGI  219 (359)
Q Consensus       212 ~~dg~~~i  219 (359)
                      +.||.+..
T Consensus       274 ~rd~~i~~  281 (735)
T KOG0308|consen  274 GRDGNIYR  281 (735)
T ss_pred             CCCCcEEe
Confidence            99998654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=1.1e-16  Score=139.97  Aligned_cols=163  Identities=17%  Similarity=0.287  Sum_probs=130.5

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~  139 (359)
                      +|..++|+| +...|++||.|.+|.||++..+       +++..+.+|...|.-+.|+|. .+.|+++|.|.+|.+||+.
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            899999999 5678999999999999997533       567889999999999999995 4578999999999999999


Q ss_pred             CCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          140 KYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       140 ~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      +|+.+.++  ++-|++++|+.+|  +++++.|..|+|||.+.+ ..+..-..|.   +..-..+.|..+|.++.+|.+..
T Consensus       163 tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~he---G~k~~Raifl~~g~i~tTGfsr~  238 (472)
T KOG0303|consen  163 TGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHE---GAKPARAIFLASGKIFTTGFSRM  238 (472)
T ss_pred             CCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeeccccc---CCCcceeEEeccCceeeeccccc
Confidence            99988777  5568999999999  788889999999997665 5555556664   34456667777777554443322


Q ss_pred             e------------------------------------EEEEEcCCCCCceeeeccC
Q 040274          216 W------------------------------------SGILVPRSSEPNFDSWVAN  235 (359)
Q Consensus       216 ~------------------------------------~~i~~~gs~~~~~~~~~~~  235 (359)
                      .                                    ..||+-|-||++|+-|+++
T Consensus       239 seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  239 SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            1                                    2247888999999999765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.6e-16  Score=144.98  Aligned_cols=152  Identities=18%  Similarity=0.294  Sum_probs=118.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee------cCCC-----CeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML------YHQG-----PVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~------~h~~-----~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      .++++..++.+.+|++|+.+|.|..||+++...+.++.      .|.+     .|+++.|+.+|-.+++|+.+|.|.|||
T Consensus       177 ~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  177 ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            78999999999999999999999999999876665554      2333     399999999999999999999999999


Q ss_pred             cCCCeeeEee----cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE
Q 040274          138 LRKYEVLQTL----TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       138 ~~~~~~~~~~----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      +++.+++..-    ..+|..+.|.+.+   .++......++|||-.++ .....+..     ...+..+|+-|++..+++
T Consensus       257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G-k~~asiEp-----t~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG-KPMASIEP-----TSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             cccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccC-Cceeeccc-----cCCcCceeeecCCceEEE
Confidence            9998876554    4568999998874   444445578999995444 33333222     226899999999999999


Q ss_pred             EeCCCeE-EEEEcCCCC
Q 040274          211 GHSMGWS-GILVPRSSE  226 (359)
Q Consensus       211 g~~dg~~-~i~~~gs~~  226 (359)
                      +-.++-+ .+|+|.-|.
T Consensus       331 Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  331 ANESSKMHTYYIPSLGP  347 (703)
T ss_pred             ecCCCcceeEEccccCC
Confidence            9888755 456665543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-16  Score=139.54  Aligned_cols=167  Identities=18%  Similarity=0.298  Sum_probs=128.3

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      -.+.+||++++|++.|.                      .|..++|+.++..|++++.+|.|.+||+++..++..+.. .
T Consensus       307 e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~  385 (514)
T KOG2055|consen  307 ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-D  385 (514)
T ss_pred             heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-c
Confidence            45677899999999887                      789999999999999999999999999999998888864 3


Q ss_pred             CCe--EEEEEecCCCEEEEecCCCeEEEEEcCC------CeeeEee---cCCceeEEEcCCC-cEEE-E--cCCcEEEEc
Q 040274          110 GPV--SALAFHPNGHLMATTGKECKIKIWDLRK------YEVLQTL---TGHAKTLDFSQKG-LLAV-G--TGSFAQILG  174 (359)
Q Consensus       110 ~~v--~~l~~~p~g~~l~s~~~d~~i~vwd~~~------~~~~~~~---~~~v~~~~~s~~g-l~~~-~--~d~~i~v~d  174 (359)
                      +.|  ++++.+++|.|||+|+..|.|.|||..+      .+++.++   ...|+++.|+|++ +++. |  ..+.+++..
T Consensus       386 G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  386 GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            333  4566678999999999999999999754      3455554   4578999999999 4433 3  357788777


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +..- ....-++.... .-..|+|++|+|.+.+|++|..+|.+.+|-
T Consensus       466 vPS~-TVFsNfP~~n~-~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  466 VPSC-TVFSNFPTSNT-KVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             ccce-eeeccCCCCCC-cccceEEEEecCCCceEEeecCCCceeeEe
Confidence            5322 22222222222 233699999999999999999999777663

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.71  E-value=2e-16  Score=135.11  Aligned_cols=164  Identities=18%  Similarity=0.221  Sum_probs=134.2

Q ss_pred             hhccceEEEECCCCCEEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEe
Q 040274           47 KNLVHILWILPSSGRYMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        47 ~ll~~~~l~~spdg~~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd   95 (359)
                      .+...++|+|+|||.+|+.|-.                              -+.|++||| +...++.|+....+-||.
T Consensus       157 e~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~  236 (406)
T KOG2919|consen  157 EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN  236 (406)
T ss_pred             hhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence            3445599999999999998876                              578999999 666999999999999999


Q ss_pred             CCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCC-eeeEeecCCce------eEEEcCCC--cEEEE
Q 040274           96 PTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKY-EVLQTLTGHAK------TLDFSQKG--LLAVG  165 (359)
Q Consensus        96 ~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~-~~~~~~~~~v~------~~~~s~~g--l~~~~  165 (359)
                      -..+.++..+.+|.+.|+.+.|+++|+.|++|.. |..|-.||+|.. .++..+..++.      -++..|+|  |++++
T Consensus       237 ~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC
Confidence            8889999999999999999999999999999885 778999999964 46666655442      34556778  55566


Q ss_pred             cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          166 TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .+|.|++||+...+..+..+..+..    .|+.++++|.-.++++++..
T Consensus       317 tdG~V~vwdlk~~gn~~sv~~~~sd----~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  317 TDGSVRVWDLKDLGNEVSVTGNYSD----TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCccEEEEecCCCCCcccccccccc----cccceecCcccceeeeccCc
Confidence            8999999998765565666666654    79999999998877777655

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=123.47  Aligned_cols=170  Identities=16%  Similarity=0.225  Sum_probs=130.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------------------ceeEEEEcCCCCEEEEEeCCCeEEE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------------------RTDLMRVNPFNGVVSLGHSGGTVTM   93 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------------------~v~~l~~sp~~~~l~tg~~dg~v~l   93 (359)
                      .+++|+|.|.+.+.|+.                                      .|.|.+|+|+|.+|++|++|.+|.+
T Consensus        36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~  115 (350)
T KOG0641|consen   36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKV  115 (350)
T ss_pred             eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEE
Confidence            78999999999999887                                      8999999999999999999999998


Q ss_pred             EeCCCCc-----ceEEeecCCCCeEEEEEec----CCCEEEEec-CCCeEEEEEcCCCeeeEeec---CCceeE-EEcCC
Q 040274           94 WKPTTSA-----LLIKMLYHQGPVSALAFHP----NGHLMATTG-KECKIKIWDLRKYEVLQTLT---GHAKTL-DFSQK  159 (359)
Q Consensus        94 wd~~~~~-----~~~~~~~h~~~v~~l~~~p----~g~~l~s~~-~d~~i~vwd~~~~~~~~~~~---~~v~~~-~~s~~  159 (359)
                      .-.+...     .-..|..|.+.|..++|-.    .|.+|++++ .|..|++-|...|+.++.+.   ++|.++ .|+.-
T Consensus       116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~  195 (350)
T KOG0641|consen  116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGA  195 (350)
T ss_pred             EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCc
Confidence            8665432     2346778999999999954    356777766 47889999999999988884   456554 34322


Q ss_pred             CcEEEEcCCcEEEEcCCCCCccccccccc---cCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          160 GLLAVGTGSFAQILGDFSGSHNYSRYMGN---SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       160 gl~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      -+++++.|.+|++||++-. ..+..+...   .+...+.|.+++..|.|++|++|..|....+|..
T Consensus       196 m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  196 MFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             EEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            2778889999999997654 233332211   1113357999999999999999999987766543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.70  E-value=7.3e-16  Score=130.22  Aligned_cols=179  Identities=15%  Similarity=0.235  Sum_probs=141.9

Q ss_pred             eEEEECCCCCEEEEeccceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------------ceE---EeecCCCCeEEE
Q 040274           52 ILWILPSSGRYMAVAGRRTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSA------------LLI---KMLYHQGPVSAL  115 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~------------~~~---~~~~h~~~v~~l  115 (359)
                      .+|.+++|-.+.-.-+..|+++.+.+ .|.++++|+.||.|-+||+....            ++.   .-.+|.-.|.++
T Consensus        28 l~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~  107 (397)
T KOG4283|consen   28 LSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSA  107 (397)
T ss_pred             heeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeee
Confidence            56777777766654444799999999 79999999999999999987432            110   012577789999


Q ss_pred             EEec-CCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC----cEEEEc-CCcEEEEcCCCCCcccccccc
Q 040274          116 AFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG----LLAVGT-GSFAQILGDFSGSHNYSRYMG  187 (359)
Q Consensus       116 ~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g----l~~~~~-d~~i~v~d~~~~~~~~~~~~~  187 (359)
                      .|-| |..+|.+++-|.+++|||..+.+....|  ++.|.+-+|||-.    |++++. +-.|++-|+..+ .....+.+
T Consensus       108 ~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsG  186 (397)
T KOG4283|consen  108 IWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSG  186 (397)
T ss_pred             EEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeecc
Confidence            9999 5557888899999999999998876666  7788888998854    666655 569999997655 66777788


Q ss_pred             ccCCCCcceeEEEEccCCCE-EEEEeCCCeEEEEEcCCCCCceeeeccC
Q 040274          188 NSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSGILVPRSSEPNFDSWVAN  235 (359)
Q Consensus       188 ~~~~~~~~v~~~~~sp~~~~-l~~g~~dg~~~i~~~gs~~~~~~~~~~~  235 (359)
                      |..    .|.++.|+|...+ |++|+.||.+++|..--..+++...+..
T Consensus       187 Hr~----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  187 HRD----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             ccC----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            865    8999999998765 6899999999999887777788887754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.7e-17  Score=158.94  Aligned_cols=171  Identities=18%  Similarity=0.205  Sum_probs=137.5

Q ss_pred             eEEEECCCCCE----EEEecc-----------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040274           52 ILWILPSSGRY----MAVAGR-----------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~----l~~~~~-----------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~   97 (359)
                      +.|+|++.|..    |+.|..                             .|..+.|++ .+++|++|+.||.|.|||++
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            89999988887    444433                             899999999 55699999999999999998


Q ss_pred             CCcceEEee--cCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC---cEEEEc
Q 040274           98 TSALLIKML--YHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG---LLAVGT  166 (359)
Q Consensus        98 ~~~~~~~~~--~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g---l~~~~~  166 (359)
                      ..+.-.++.  ...+.|.+++|+. ..+.|++++.+|.+.|||++..+++..+.     .++..++|+|++   +++++.
T Consensus       148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence            654333331  2457899999987 45568999999999999999988777662     357899999998   666665


Q ss_pred             C---CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEEEcCCCC
Q 040274          167 G---SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       167 d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      |   -.|.+||++........+..|..    .|.++.|++.+ .+|++++.|+.+.+|.+.+++
T Consensus       228 dd~~PviqlWDlR~assP~k~~~~H~~----GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFASSPLKILEGHQR----GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             CCCCceeEeecccccCCchhhhccccc----ceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence            4   47999999988788888877765    79999999966 889999999999888766643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=6.2e-16  Score=137.72  Aligned_cols=163  Identities=17%  Similarity=0.301  Sum_probs=133.7

Q ss_pred             eEEEECCCCC-EEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGR-YMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      .+..|+|+|. .++++++                          .+.....+|++++|+..+..|.|.+....|++.+.+
T Consensus       261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s  340 (514)
T KOG2055|consen  261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS  340 (514)
T ss_pred             ceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence            7889999999 7777777                          567788899999999999999999999999999988


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCc--eeEEEcCCC-cEE-EEcCCcEEEEcCCC-
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHA--KTLDFSQKG-LLA-VGTGSFAQILGDFS-  177 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v--~~~~~s~~g-l~~-~~~d~~i~v~d~~~-  177 (359)
                      +.. .+.|..++|+.++..|+.++.+|.|++||++...+++.+  .|.+  +++|.|++| +++ |+..|.|.|||... 
T Consensus       341 ~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  341 FKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             eee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            865 788999999999999999999999999999999999998  4444  788889999 555 45569999999422 


Q ss_pred             ----CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC--eEEE
Q 040274          178 ----GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG--WSGI  219 (359)
Q Consensus       178 ----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg--~~~i  219 (359)
                          .++++..+.....    .|+++.|+||+.+|+.+|...  .+++
T Consensus       420 ~~s~~PkPik~~dNLtt----~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTT----AITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             hccCCCCchhhhhhhhe----eeeeeeeCcchhhhhhhhhccccceEE
Confidence                2334444444433    799999999999999888643  4444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.69  E-value=8e-16  Score=143.13  Aligned_cols=142  Identities=20%  Similarity=0.252  Sum_probs=108.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|+++..-|++ .++|||.|.+|++|.-  ++.+.+|.+|++-|.++++-+++ .|++|+.||.|++||+ +|+++..+.
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~  216 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH  216 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee
Confidence            78888888877 7889999999999974  67788888999999999988765 5778889999999998 677777774


Q ss_pred             C---CceeEEE-cCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 G---HAKTLDF-SQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 ~---~v~~~~~-s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +   .+++++. .+++ ++++|.|++++||+..   .....+ .+   ++..|+++.+-++|+ |++|++||.++||-..
T Consensus       217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I-~l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVI-TL---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEE-ec---CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            4   4778874 4445 8888889999999843   222222 22   333688888888887 6778888888888654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.3e-15  Score=125.74  Aligned_cols=163  Identities=17%  Similarity=0.257  Sum_probs=121.8

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEE-cC-CCCEEEEEeCCCeEEEEeCC-----
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRV-NP-FNGVVSLGHSGGTVTMWKPT-----   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~-sp-~~~~l~tg~~dg~v~lwd~~-----   97 (359)
                      .|+.|.+.|+++|+|+.                           .|..+.| +| -|+.+++++.|++|.||.-.     
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~   96 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE   96 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence            78899999999999987                           7889999 45 68999999999999999742     


Q ss_pred             C----CcceEEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCC------CeeeEeec----------CCceeEE
Q 040274           98 T----SALLIKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRK------YEVLQTLT----------GHAKTLD  155 (359)
Q Consensus        98 ~----~~~~~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~------~~~~~~~~----------~~v~~~~  155 (359)
                      .    .....++....+.|+.+.|.|  -|-.||+++.||.|+||+...      ..+.+.+.          .+..|+.
T Consensus        97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs  176 (361)
T KOG2445|consen   97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS  176 (361)
T ss_pred             cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence            1    122345556778999999999  477899999999999997653      22233331          2358999


Q ss_pred             EcCCC----cEEEEcCC------cEEEEcCCCCCcc---ccccccccCCCCcceeEEEEccCC----CEEEEEeCCCeEE
Q 040274          156 FSQKG----LLAVGTGS------FAQILGDFSGSHN---YSRYMGNSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSG  218 (359)
Q Consensus       156 ~s~~g----l~~~~~d~------~i~v~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~g~~dg~~~  218 (359)
                      |+|.-    +++++.+.      .+.||........   ...+.+|.    .+|++++|.|.-    ..||+++.|| ++
T Consensus       177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~----dpI~di~wAPn~Gr~y~~lAvA~kDg-v~  251 (361)
T KOG2445|consen  177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT----DPIRDISWAPNIGRSYHLLAVATKDG-VR  251 (361)
T ss_pred             eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC----CcceeeeeccccCCceeeEEEeecCc-EE
Confidence            99865    77777765      8888874444322   33445554    499999999953    5789999998 44


Q ss_pred             E
Q 040274          219 I  219 (359)
Q Consensus       219 i  219 (359)
                      |
T Consensus       252 I  252 (361)
T KOG2445|consen  252 I  252 (361)
T ss_pred             E
Confidence            4

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=145.26  Aligned_cols=163  Identities=18%  Similarity=0.269  Sum_probs=134.9

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      +++++..-+.+|++|+.                       .|.+|...  ...+++|+.|.+|++|++.++.++..+.+|
T Consensus       253 ~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h  330 (537)
T KOG0274|consen  253 WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGH  330 (537)
T ss_pred             eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccc
Confidence            88888777888888885                       45555443  447788999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---ceeEEEcC-CCcEEEEcCCcEEEEcCCCCCccccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQ-KGLLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---v~~~~~s~-~gl~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      .++|+++.++  +.++++|+.|++|.+||+.++++++++.+|   |.++.+.+ .-+++++.|++|++||+.+.......
T Consensus       331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhh
Confidence            9999999997  789999999999999999999999999665   78888888 44999999999999997655456677


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      +..|..    -|.++  ...+.+|++++.|+.+.+|....
T Consensus       409 l~~h~~----~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  409 LQGHTS----LVSSL--LLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             hcCCcc----ccccc--ccccceeEeccccccEEEeeccc
Confidence            777754    45444  44788999999999999985433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.68  E-value=1e-15  Score=129.72  Aligned_cols=143  Identities=16%  Similarity=0.239  Sum_probs=108.1

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCC-Ccce-EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTT-SALL-IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~-~~~~-~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .|.+|+||| ...++++||.||+|++|++.. +..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.+++...
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence            799999999 566788999999999999986 3333 3345799999999999999999999999999999999997643


Q ss_pred             --eecCCceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 --TLTGHAKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 --~~~~~v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                        ...++|.++.|-+..    |+++++|.+|+.||++.. .++..+.-..     .|+++..  -...++++..+..+.+
T Consensus       109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~LPe-----RvYa~Dv--~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQLPE-----RVYAADV--LYPMAVVATAERHIAV  180 (347)
T ss_pred             eeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeeccc-----eeeehhc--cCceeEEEecCCcEEE
Confidence              337889999997765    689999999999997654 3333332221     4555544  3345555555554443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.68  E-value=1.2e-15  Score=128.49  Aligned_cols=151  Identities=19%  Similarity=0.352  Sum_probs=122.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-eEEee-----cCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL-LIKML-----YHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~-~~~~~-----~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     .|....++-+|+|  +|+.+++. .|+++..||+|+
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence            689999999888887775 78999999987654 33222     3566788899999  77777665 678999999999


Q ss_pred             CeeeEee-cCC---ceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEe
Q 040274          141 YEVLQTL-TGH---AKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGH  212 (359)
Q Consensus       141 ~~~~~~~-~~~---v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~  212 (359)
                      ......+ ..|   +.+++|+|+-   +++++.||.|+|||++....++..+..|..    .|+++.|+|.- .+|++|+
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH----WvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH----WVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce----EEEEEEecCccceEEEecC
Confidence            8877777 334   7999999987   788889999999999888888888888865    99999999954 6678888


Q ss_pred             CCCeEEEEEcCCC
Q 040274          213 SMGWSGILVPRSS  225 (359)
Q Consensus       213 ~dg~~~i~~~gs~  225 (359)
                      .|..+.++..++.
T Consensus       279 SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  279 SDSAVNLSCASSV  291 (370)
T ss_pred             CCceeEEEecccc
Confidence            8988888766543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.68  E-value=1e-15  Score=142.34  Aligned_cols=155  Identities=16%  Similarity=0.209  Sum_probs=131.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|.|++...++. +++||.|.++++|-+.  ++...+.+|+..|+++..-|++ .++|||.|.+|++|.-  ++++++|.
T Consensus       103 nVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~  176 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS  176 (745)
T ss_pred             ceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc
Confidence            677777766666 9999999999999764  6677799999999999999987 8899999999999976  67788886


Q ss_pred             CC---ceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE----
Q 040274          149 GH---AKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL----  220 (359)
Q Consensus       149 ~~---v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~----  220 (359)
                      +|   |..+++-+++ +++++.||.|++|++ .+ ..+..+.+|..    -|++++..+++..++++++|+.++||    
T Consensus       177 gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  177 GHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG-EVLLEMHGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             cchhheeeeEEecCCCeEeecCCceEEEEec-cC-ceeeeeeccce----EEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence            65   7889999996 999999999999996 33 56666777754    79999988999999999999998883    


Q ss_pred             -----------------------EcCCCCCceeeeccC
Q 040274          221 -----------------------VPRSSEPNFDSWVAN  235 (359)
Q Consensus       221 -----------------------~~gs~~~~~~~~~~~  235 (359)
                                             +.|+.|+.+++|...
T Consensus       251 ~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  251 CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence                                   567778888888654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.7e-15  Score=144.99  Aligned_cols=159  Identities=15%  Similarity=0.248  Sum_probs=131.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec-
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-  107 (359)
                      .+++++-+|.++|.|+.                       +|.++.|+|.+.+||+.+.||.|++||+.++....++.+ 
T Consensus       100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v  179 (933)
T KOG1274|consen  100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV  179 (933)
T ss_pred             eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence            88999999999999998                       899999999999999999999999999998876665542 


Q ss_pred             -------CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          108 -------HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       108 -------h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                             ....+.-++|+|+|..|+..+.|+.|++|+...+.....+.     ..+.+++|+|.|  +++++.+|.|.||
T Consensus       180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence                   13467789999999899999999999999999998887772     237899999999  5666679999999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      |+.+.       ..|.  ....|++++|.|+++.|-.-...|+..+
T Consensus       260 nv~t~-------~~~~--~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  260 NVDTH-------ERHE--FKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             ecccc-------hhcc--ccceeEEEecCCCCCeeEEEeecccccc
Confidence            97542       1132  3447999999999988776666665444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1e-15  Score=126.11  Aligned_cols=147  Identities=17%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS---ALLIKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      .|+....+-.|..|+|++.|++|+|+..+..   ..+..+.+|.+||+-++|..  -|.+||+++.||.|.||.-..+.-
T Consensus        13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w   92 (299)
T KOG1332|consen   13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW   92 (299)
T ss_pred             hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence            4566666778999999999999999998754   45778899999999999954  799999999999999999887743


Q ss_pred             e--Eee---cCCceeEEEcCCC----cEEEEcCCcEEEEcCCCC-Ccc-ccccccccCCCCcceeEEEEccC---C----
Q 040274          144 L--QTL---TGHAKTLDFSQKG----LLAVGTGSFAQILGDFSG-SHN-YSRYMGNSMVKGYQIGKVSFRPY---E----  205 (359)
Q Consensus       144 ~--~~~---~~~v~~~~~s~~g----l~~~~~d~~i~v~d~~~~-~~~-~~~~~~~~~~~~~~v~~~~~sp~---~----  205 (359)
                      .  +.+   ...|++++|.|.+    |++++.||.|.|++.... ... ......|..    .|++++|.|-   |    
T Consensus        93 ~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~----GvnsVswapa~~~g~~~~  168 (299)
T KOG1332|consen   93 TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI----GVNSVSWAPASAPGSLVD  168 (299)
T ss_pred             hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc----ccceeeecCcCCCccccc
Confidence            2  222   5679999999987    677888999999885544 222 223344543    7999999996   5    


Q ss_pred             -------CEEEEEeCCCeEEE
Q 040274          206 -------DVLGIGHSMGWSGI  219 (359)
Q Consensus       206 -------~~l~~g~~dg~~~i  219 (359)
                             ..|++|+.|..+.|
T Consensus       169 ~~~~~~~krlvSgGcDn~Vki  189 (299)
T KOG1332|consen  169 QGPAAKVKRLVSGGCDNLVKI  189 (299)
T ss_pred             cCcccccceeeccCCccceee
Confidence                   33666666666555

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.2e-16  Score=149.07  Aligned_cols=161  Identities=17%  Similarity=0.282  Sum_probs=137.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      -|+.|+++..+|+.|..                       .+.++.|+|.+.+++.|+.|+.+.+||++...|...+.+|
T Consensus        74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~  153 (825)
T KOG0267|consen   74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH  153 (825)
T ss_pred             eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC
Confidence            78888888888887765                       7889999999999999999999999999988899999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ...|.++.|+|+|+++++++.|.+++|||...|+.+..|.   +.+.++.|+|..  +..|+.|+++.+||+.+- ..+.
T Consensus       154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~  232 (825)
T KOG0267|consen  154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVIS  232 (825)
T ss_pred             cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEee
Confidence            9999999999999999999999999999999999998886   668999999988  667888999999997533 2222


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      .....    ...|.++.|+|++..+++|......
T Consensus       233 s~~~~----~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  233 SGKPE----TDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccCCc----cCCceeeeecCCceeeecCchhhhh
Confidence            22222    2369999999999999988876644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=6.8e-16  Score=142.26  Aligned_cols=163  Identities=14%  Similarity=0.241  Sum_probs=132.9

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~  139 (359)
                      .|+.+.|+| |...|++++.||.|++|.+..+       ++...+.+|...|+++.|+| ....|++++.|.+|++||++
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            799999999 7889999999999999998643       45667889999999999999 45689999999999999999


Q ss_pred             CCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          140 KYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       140 ~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      ++.....+   .+.|.+++|||+|  +.+++.||+|+||..+.....+..-.+.   -+..-..+.|.-+|+++++.+.|
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp---vgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP---VGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC---ccCcceeEEEEecCcEEEEeccc
Confidence            98776666   4568999999999  8899999999999977665544433333   23345667888899999888777


Q ss_pred             CeE--------------------------------------EEEEcCCCCCceeeecc
Q 040274          215 GWS--------------------------------------GILVPRSSEPNFDSWVA  234 (359)
Q Consensus       215 g~~--------------------------------------~i~~~gs~~~~~~~~~~  234 (359)
                      ...                                      .++++|.||..+..|++
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence            641                                      13788999999888865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.66  E-value=1.7e-15  Score=143.62  Aligned_cols=164  Identities=15%  Similarity=0.211  Sum_probs=138.7

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++.++-|++.++|..                          +|+.++...-++.+++++.+|.+.+||......+..+
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l  531 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL  531 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence            78889999999988765                          8999999988999999999999999999988777666


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCc
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~  180 (359)
                      .- ...+.++.++....+++.+..|-.|.++|+.+.+.++.+.   +.+++++|||||  +++++.|++|++||+.++ .
T Consensus       532 ~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~-~  609 (910)
T KOG1539|consen  532 RL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG-T  609 (910)
T ss_pred             cc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc-c
Confidence            53 4557788888888899999999999999999988888885   458999999999  889999999999998766 4


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCC-eEEEEEc
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG-WSGILVP  222 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg-~~~i~~~  222 (359)
                      .+..+.-.     .++.++.|+|+|++||+.+.|. -+.+|..
T Consensus       610 lID~~~vd-----~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  610 LIDGLLVD-----SPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eeeeEecC-----CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            44444333     3789999999999999999984 4677754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.2e-14  Score=123.63  Aligned_cols=146  Identities=16%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC----cceEEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCC--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS----ALLIKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRK--  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~--  140 (359)
                      -|+|+.|++.|..+++|+.|++|.|||.+..    .+......|.+.|..+.|.+  -|..+|+++.|+++.||.=..  
T Consensus        15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~   94 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS   94 (361)
T ss_pred             eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence            4889999999999999999999999996533    45566789999999999954  588999999999999996421  


Q ss_pred             -------CeeeEee---cCCceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccc--------cccCCCCcceeE
Q 040274          141 -------YEVLQTL---TGHAKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYM--------GNSMVKGYQIGK  198 (359)
Q Consensus       141 -------~~~~~~~---~~~v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~--------~~~~~~~~~v~~  198 (359)
                             .....++   .+.|+++.|.|..    +++++.||+++||+.........-..        ...+.+..+..|
T Consensus        95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C  174 (361)
T KOG2445|consen   95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC  174 (361)
T ss_pred             cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence                   1123333   4679999999975    78888999999999654422211111        111124457899


Q ss_pred             EEEccC---CCEEEEEeCC
Q 040274          199 VSFRPY---EDVLGIGHSM  214 (359)
Q Consensus       199 ~~~sp~---~~~l~~g~~d  214 (359)
                      +.|+|.   ..+|++|+.+
T Consensus       175 vsWn~sr~~~p~iAvgs~e  193 (361)
T KOG2445|consen  175 VSWNPSRMHEPLIAVGSDE  193 (361)
T ss_pred             EeeccccccCceEEEEccc
Confidence            999984   4788888887

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.65  E-value=2.9e-15  Score=139.90  Aligned_cols=166  Identities=14%  Similarity=0.169  Sum_probs=132.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcC---CCCEEEEEeCCCeEEEEeCCCC-cceEE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNP---FNGVVSLGHSGGTVTMWKPTTS-ALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp---~~~~l~tg~~dg~v~lwd~~~~-~~~~~  104 (359)
                      .++++||+|++||+|..                       .|.|+.|+-   ..++|++++.|..|+|||+... .++.+
T Consensus       463 R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt  542 (1080)
T KOG1408|consen  463 RALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT  542 (1080)
T ss_pred             EEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence            89999999999999876                       799999975   3578999999999999997532 44455


Q ss_pred             eecCCCCeEEEE-------------------------------------------------EecCCCEEEEecCCCeEEE
Q 040274          105 MLYHQGPVSALA-------------------------------------------------FHPNGHLMATTGKECKIKI  135 (359)
Q Consensus       105 ~~~h~~~v~~l~-------------------------------------------------~~p~g~~l~s~~~d~~i~v  135 (359)
                      +.+|...|+++.                                                 +.|+..++++++.|.+|+|
T Consensus       543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri  622 (1080)
T KOG1408|consen  543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI  622 (1080)
T ss_pred             hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence            555655555544                                                 4455558899999999999


Q ss_pred             EEcCCCeeeEeec------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          136 WDLRKYEVLQTLT------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       136 wd~~~~~~~~~~~------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      ||+.+++.+..|.      |..--+...|.|  +++.+.|.++.+||...+ +.+....+|..    .|+.+.|.+|.+.
T Consensus       623 f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE----~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  623 FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSE----AVTGVKFLNDCKH  697 (1080)
T ss_pred             EeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcch----heeeeeecccchh
Confidence            9999999999993      345668889999  555667899999996554 67777777754    8999999999999


Q ss_pred             EEEEeCCCeEEEEEc
Q 040274          208 LGIGHSMGWSGILVP  222 (359)
Q Consensus       208 l~~g~~dg~~~i~~~  222 (359)
                      |++.+.||.|-||--
T Consensus       698 lISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKL  712 (1080)
T ss_pred             heeecCCceEEEEEC
Confidence            999998886666643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=9.3e-15  Score=128.03  Aligned_cols=172  Identities=18%  Similarity=0.207  Sum_probs=136.2

Q ss_pred             eEEEECC-CCCEEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~   99 (359)
                      .+++|+| +...||+|+.                              .|.-++||| -.+.|++++.|.+|.+|++.|+
T Consensus        85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen   85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence            7888988 6666777776                              788999999 4578999999999999999999


Q ss_pred             cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC----ceeEEEcCCC-cEEEEc----CCcE
Q 040274          100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH----AKTLDFSQKG-LLAVGT----GSFA  170 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----v~~~~~s~~g-l~~~~~----d~~i  170 (359)
                      +.+.++. |.+.|++++|+.||.+|+|++.|..|+|||.++++.+..-.+|    ...+.|-.+| +++.+.    +..+
T Consensus       165 eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~  243 (472)
T KOG0303|consen  165 EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI  243 (472)
T ss_pred             ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence            9988886 9999999999999999999999999999999999998877433    4667788888 777664    5689


Q ss_pred             EEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE-EEeCCCeEEEEEcCCCCC
Q 040274          171 QILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG-IGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~g~~dg~~~i~~~gs~~~  227 (359)
                      -+||..+-........-.   .++.|.---|.||..+++ +|-.|+.|+.|-.....+
T Consensus       244 aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  244 ALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eccCcccccCcceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            999965544432222111   334577778999888775 556789998876655544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.2e-15  Score=130.14  Aligned_cols=163  Identities=17%  Similarity=0.250  Sum_probs=136.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc------CC--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL------RK--  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~------~~--  140 (359)
                      .|+.++......++.+++.|.+.+||.+.++.|+..+.+|.+.|+++.|++.+.++++++.|++..||..      ..  
T Consensus       150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~  229 (481)
T KOG0300|consen  150 GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN  229 (481)
T ss_pred             ceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence            6777777666668999999999999999999999999999999999999999999999999999999962      10  


Q ss_pred             ----------------------------C----eeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          141 ----------------------------Y----EVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       141 ----------------------------~----~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                                                  +    .++..+.+   .|.++.|-..|  ++++++|.+..+||+.++ ..+.
T Consensus       230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-e~v~  308 (481)
T KOG0300|consen  230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-EVVN  308 (481)
T ss_pred             CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-ceec
Confidence                                        0    01222223   35777887777  999999999999997665 7788


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------------EEcCCCCCceeeec
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------------LVPRSSEPNFDSWV  233 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------------~~~gs~~~~~~~~~  233 (359)
                      .+.+|..    ..+.++-+|..+++++++.|...++                              +++|++|.++++|+
T Consensus       309 ~LtGHd~----ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  309 ILTGHDS----ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWD  384 (481)
T ss_pred             cccCcch----hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEee
Confidence            8888865    7888999999999999999988666                              58899999999999


Q ss_pred             cCC
Q 040274          234 ANP  236 (359)
Q Consensus       234 ~~~  236 (359)
                      ...
T Consensus       385 LrN  387 (481)
T KOG0300|consen  385 LRN  387 (481)
T ss_pred             ecc
Confidence            753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.7e-14  Score=119.01  Aligned_cols=159  Identities=14%  Similarity=0.214  Sum_probs=115.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|++|...|..+-+++++.|+.++-||+.+|+....+.+|++.|.++.--.....+++|+.||++++||.++++++..+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            79999999976666666689999999999999999999999999999984444568899999999999999999988872


Q ss_pred             C-------------CceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe---
Q 040274          149 G-------------HAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH---  212 (359)
Q Consensus       149 ~-------------~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~---  212 (359)
                      .             .|.+++.+.| .+.|+.+..+.+|+++.. .....++-..     +|..+.|.  .+.+++++   
T Consensus       196 ~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLrss-e~t~vfpipa-----~v~~v~F~--~d~vl~~G~g~  266 (325)
T KOG0649|consen  196 PYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLRSS-ESTCVFPIPA-----RVHLVDFV--DDCVLIGGEGN  266 (325)
T ss_pred             cccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEeccCC-CceEEEeccc-----ceeEeeee--cceEEEecccc
Confidence            1             1344443333 677777889999997655 4444443331     57778884  44566665   


Q ss_pred             ------CCCeEEEEEcCCCCC-ceeeeccCC
Q 040274          213 ------SMGWSGILVPRSSEP-NFDSWVANP  236 (359)
Q Consensus       213 ------~dg~~~i~~~gs~~~-~~~~~~~~~  236 (359)
                            .+|.+...++++... ....|...|
T Consensus       267 ~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p  297 (325)
T KOG0649|consen  267 HVQSYTLNGVLQANIPVESTACYSASWQTSP  297 (325)
T ss_pred             ceeeeeeccEEEEeccCCccceeeecccCCc
Confidence                  345566666655443 334555433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.6e-14  Score=123.20  Aligned_cols=181  Identities=14%  Similarity=0.117  Sum_probs=130.8

Q ss_pred             ceEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           51 HILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        51 ~~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      ..|+.|++.|.+||.|..                       +|+|++||++|..|+|+|.|..|.+||+..|.++..+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            389999999999999876                       899999999999999999999999999988876655431


Q ss_pred             CCCCeEE-----------------------------------------------EEEecCCCEEEEecCCCeEEEEEcCC
Q 040274          108 HQGPVSA-----------------------------------------------LAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus       108 h~~~v~~-----------------------------------------------l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                       .++|+.                                               ..|++.|+++++|...|.+.++|..+
T Consensus       106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence             112211                                               22555678999999999999999999


Q ss_pred             CeeeEeec----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCC---Cccccccccc---cCCCCcceeEEEEccCCCEE
Q 040274          141 YEVLQTLT----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSG---SHNYSRYMGN---SMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       141 ~~~~~~~~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~---~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l  208 (359)
                      .+++..+.    ..|..+.++..|  ++.-+.|+.|+.|++..-   +.....-..|   ......+-.+++|+.+|.|+
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv  264 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV  264 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence            99988882    457889999999  778888999999986421   1111111111   01122245788999999999


Q ss_pred             EEEeCC-CeEEEEEcCCCCCceeeec
Q 040274          209 GIGHSM-GWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       209 ~~g~~d-g~~~i~~~gs~~~~~~~~~  233 (359)
                      +.|+.. ..+.||-.+.|. -+++..
T Consensus       265 ~a~s~~aHaLYIWE~~~Gs-LVKILh  289 (405)
T KOG1273|consen  265 CAGSARAHALYIWEKSIGS-LVKILH  289 (405)
T ss_pred             EeccccceeEEEEecCCcc-eeeeec
Confidence            887743 345565554442 344443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.64  E-value=8.3e-15  Score=125.36  Aligned_cols=154  Identities=13%  Similarity=0.137  Sum_probs=118.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeC-CCCc--ceEEee-----cCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKP-TTSA--LLIKML-----YHQGPVSALAFHPN-GHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~-~~~~--~~~~~~-----~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~  139 (359)
                      ...+++|+|||..|++| .+.+|+++|+ +.|.  ++....     +..+.+.+++|+|. ...+++++-...+-||.-.
T Consensus       160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~  238 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD  238 (406)
T ss_pred             hheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence            67899999999999887 4679999998 4442  222222     34788999999994 4588999988888888777


Q ss_pred             CCeeeEee---cCCceeEEEcCCC--cEEEEc-CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          140 KYEVLQTL---TGHAKTLDFSQKG--LLAVGT-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       140 ~~~~~~~~---~~~v~~~~~s~~g--l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      ...++..+   .+.|+.++|.++|  +++++. +..|.+||++....++-.+..|...... -.-+...|++++|++|+.
T Consensus       239 ~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQ-RI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  239 GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQ-RILFDLDPKGEILASGDT  317 (406)
T ss_pred             CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccc-eEEEecCCCCceeeccCC
Confidence            77777777   5669999999999  777664 7899999998887777777777541222 223456689999999999


Q ss_pred             CCeEEEEEcCC
Q 040274          214 MGWSGILVPRS  224 (359)
Q Consensus       214 dg~~~i~~~gs  224 (359)
                      +|.|++|..-.
T Consensus       318 dG~V~vwdlk~  328 (406)
T KOG2919|consen  318 DGSVRVWDLKD  328 (406)
T ss_pred             CccEEEEecCC
Confidence            99999997654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=6e-14  Score=126.09  Aligned_cols=168  Identities=14%  Similarity=0.191  Sum_probs=121.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGG-TVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg-~v~lwd~~~~~~~~~~~~  107 (359)
                      ..+.|+|+|+.+++++.                       .+.+++|+|++.++++++.++ .+.+||..++..+..+..
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            57789999998765432                       367889999999999988765 567789988776655433


Q ss_pred             CCCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCCCeeeEeecC----------CceeEEEcCCC-c--EEEEcCCcEEEE
Q 040274          108 HQGPVSALAFHPNGHLMAT-TGKECKIKIWDLRKYEVLQTLTG----------HAKTLDFSQKG-L--LAVGTGSFAQIL  173 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~~~~~~~~~~----------~v~~~~~s~~g-l--~~~~~d~~i~v~  173 (359)
                       .....+++|+|+|.+|+. +..++.|++||+.+++.+..+..          ....++|+|+| +  ++.+.++.+.+|
T Consensus       156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence             334578999999998754 45699999999999887665521          13568899999 3  334456789999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEEEcCCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVPRSSE  226 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~gs~~  226 (359)
                      |+... ....... +    +..+.+++|+|+|.+|+++. .+|.+.+|...++.
T Consensus       235 d~~~~-~~~~~~~-~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       235 DAKTY-EVLDYLL-V----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             ECCCC-cEEEEEE-e----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            97543 3332221 2    12688999999999998764 57877777766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.63  E-value=2.4e-14  Score=122.80  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=114.9

Q ss_pred             ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEEee---cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--
Q 040274           69 RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIKML---YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--  142 (359)
Q Consensus        69 ~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--  142 (359)
                      .|+.+.++|+ .++++++|.|.+|++|++.+..++..|-   +|.+.|.++.|+++|.+++++|.|.+|++|++...+  
T Consensus       137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~  216 (385)
T KOG1034|consen  137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK  216 (385)
T ss_pred             cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence            8999999995 5789999999999999999999988875   799999999999999999999999999999986210  


Q ss_pred             ----ee-------------------Eee---------------------------------cC-----------------
Q 040274          143 ----VL-------------------QTL---------------------------------TG-----------------  149 (359)
Q Consensus       143 ----~~-------------------~~~---------------------------------~~-----------------  149 (359)
                          +.                   ..|                                 +|                 
T Consensus       217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T  296 (385)
T KOG1034|consen  217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT  296 (385)
T ss_pred             hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence                00                   000                                 00                 


Q ss_pred             ----------CceeE--EEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          150 ----------HAKTL--DFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       150 ----------~v~~~--~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                                .++-+  +|.|-+  ++++...|.|.+||+........+...|.. .+..|...+|+.||.+|+..++|+
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCC
Confidence                      01112  223333  555667799999998776554444444443 566899999999999999999998


Q ss_pred             eEEEEE
Q 040274          216 WSGILV  221 (359)
Q Consensus       216 ~~~i~~  221 (359)
                      ++.-|.
T Consensus       376 ~Vwrwd  381 (385)
T KOG1034|consen  376 TVWRWD  381 (385)
T ss_pred             cEEEEE
Confidence            665443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=9.2e-15  Score=124.86  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=122.9

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCC---Cc
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTT---SA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~---~~  100 (359)
                      .+++||.||++|++++.                           ..+.+.|+||..-+ +++....++++|-+..   |.
T Consensus        90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~  169 (420)
T KOG2096|consen   90 TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS  169 (420)
T ss_pred             eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence            88999999999988776                           56788888877644 4444555788886532   11


Q ss_pred             ceEE--------e-ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEc
Q 040274          101 LLIK--------M-LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGT  166 (359)
Q Consensus       101 ~~~~--------~-~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~  166 (359)
                      ....        | .-|.-.+..+....++.++++++.|..|.+||+. |+.+.++.   ...+..+.||+|  +++++.
T Consensus       170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF  248 (420)
T KOG2096|consen  170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF  248 (420)
T ss_pred             CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence            1100        1 1355567777777788999999999999999999 88888883   345788999999  566677


Q ss_pred             CCcEEEEcCCCCC-------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          167 GSFAQILGDFSGS-------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       167 d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ...|.||.+..+.       .....+.+|.    +.|..++|+|+...+++.+.||..+||.+
T Consensus       249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~----saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             CCCceEEEEEeccCcchhhhhhhheeccch----hheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            8899999865431       1122344554    48999999999999999999998888865

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.62  E-value=1.3e-14  Score=122.46  Aligned_cols=162  Identities=20%  Similarity=0.209  Sum_probs=126.3

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~~  101 (359)
                      .|+.|.||+..|++-.+                            ..++-+|||  +++.+++. .|+++..||++|...
T Consensus       127 ~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  127 NCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK  205 (370)
T ss_pred             eeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh
Confidence            89999999999887665                            567788999  56666665 589999999999877


Q ss_pred             eEEee-cCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCC-eeeEeecCC---ceeEEEcCCC---cEEEEcCCcEEE
Q 040274          102 LIKML-YHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKY-EVLQTLTGH---AKTLDFSQKG---LLAVGTGSFAQI  172 (359)
Q Consensus       102 ~~~~~-~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~-~~~~~~~~~---v~~~~~s~~g---l~~~~~d~~i~v  172 (359)
                      ...+. +|...|..+.|+|+-. +|+||+.||.|++||.|.- .++.++.+|   |+++.|+|..   ++++|.|..|.+
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L  285 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL  285 (370)
T ss_pred             hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence            77665 7889999999999765 5899999999999999974 578888654   7999999976   888999999998


Q ss_pred             EcCCCCC----------------------------ccccccccccCCCCcceeEEEEccCCCE-EEEEeCCCeEE
Q 040274          173 LGDFSGS----------------------------HNYSRYMGNSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSG  218 (359)
Q Consensus       173 ~d~~~~~----------------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~g~~dg~~~  218 (359)
                      |....-.                            ..+..|..|.    ..|++++||.-..+ +|+-+.||.+.
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE----DSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE----DSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccccc----cceEEEeeccCCCeeEEEeccCceEE
Confidence            8642210                            1122344443    48999999997766 56778888543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4e-14  Score=131.67  Aligned_cols=165  Identities=13%  Similarity=0.158  Sum_probs=133.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--Eeec
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--KMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--~~~~  107 (359)
                      -+|+|++.|+++-++..                      .|++|+.+|.+..++.|+.||.+..++...+....  .|.-
T Consensus        73 E~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   73 ESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             eeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            67889888887766655                      89999999999999999999988888877765443  3445


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--------c-C--CceeEEEcCCC-cEEEEcCCcEEEEcC
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--------T-G--HAKTLDFSQKG-LLAVGTGSFAQILGD  175 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--------~-~--~v~~~~~s~~g-l~~~~~d~~i~v~d~  175 (359)
                      .++.|.+++|+|++..+++|+.||.|++||..++..++..        . .  -|+++.|-.++ +++|.+.|+|.+||.
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS  232 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence            6789999999999999999999999999999998876632        1 1  15778887888 888888899999995


Q ss_pred             CCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          176 FSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..+ .....+..|..    .|.+++..++++.+.+++.|+.+.-|-
T Consensus       233 ~~g-TLiqS~~~h~a----dVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  233 IFG-TLIQSHSCHDA----DVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             cCc-chhhhhhhhhc----ceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            444 55555555543    899999999999999999999765443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=1.6e-14  Score=122.03  Aligned_cols=150  Identities=14%  Similarity=0.186  Sum_probs=121.7

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc---eEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSAL---LIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      ++++..|+. +-++|.++|-|-+..|||+.++..   ...+.+|...|+.++|...+ ..||++|.||.|++||+|..+.
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            899999998 788999999999999999998733   45577999999999998854 4689999999999999998765


Q ss_pred             eEee---c---CCceeEEEcCCC---cEEEEcC-CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEe
Q 040274          144 LQTL---T---GHAKTLDFSQKG---LLAVGTG-SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGH  212 (359)
Q Consensus       144 ~~~~---~---~~v~~~~~s~~g---l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~  212 (359)
                      -..+   +   .+...++|++..   +++...| ..|.|.|++.....+..+..|..    .|+.++|.|.. ..|++++
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a----~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA----SVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc----cccceEecCCCCceeeecC
Confidence            3333   2   246788998877   5555554 68999999888788888888865    89999999975 6788888


Q ss_pred             CCCeEEEEEc
Q 040274          213 SMGWSGILVP  222 (359)
Q Consensus       213 ~dg~~~i~~~  222 (359)
                      +|....||.-
T Consensus       308 DD~qaliWDl  317 (364)
T KOG0290|consen  308 DDCQALIWDL  317 (364)
T ss_pred             CcceEEEEec
Confidence            8877777653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.61  E-value=1.8e-14  Score=128.36  Aligned_cols=171  Identities=11%  Similarity=0.084  Sum_probs=131.1

Q ss_pred             eEEEECCCCC-EEEEecc----------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGR-YMAVAGR----------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~----------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~  101 (359)
                      ++++|+|.-. .++..|+                            +|++|.|+| +...|++.|.||+|++-|+.....
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~  269 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS  269 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh
Confidence            9999999665 5554444                            799999999 557899999999999999987643


Q ss_pred             --eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee-eEee---cCCceeEEEcCCC---cEEEEcCCcEEE
Q 040274          102 --LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV-LQTL---TGHAKTLDFSQKG---LLAVGTGSFAQI  172 (359)
Q Consensus       102 --~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~-~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v  172 (359)
                        +..+......+.++.|+.+...++.++.=|.+.+||.+++.. ...+   ...|++++++|-.   ++++|.|++.+|
T Consensus       270 e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI  349 (498)
T KOG4328|consen  270 EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI  349 (498)
T ss_pred             HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence              333333455677888888888888888878999999998643 2222   4579999999987   888999999999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ||++.-.....++.. ...|...|.++.|||.+-.|++.+.|..++||...
T Consensus       350 WD~R~l~~K~sp~ls-t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  350 WDLRQLRGKASPFLS-TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eehhhhcCCCCccee-cccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            998764333322111 11144489999999998889999999999999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=1.6e-14  Score=128.25  Aligned_cols=146  Identities=14%  Similarity=0.190  Sum_probs=110.3

Q ss_pred             ceeEEEEcCC-------CCEEEEEeCCCeEEEEeCCCC---cceEE------------------eecCCCCeEEEEEecC
Q 040274           69 RTDLMRVNPF-------NGVVSLGHSGGTVTMWKPTTS---ALLIK------------------MLYHQGPVSALAFHPN  120 (359)
Q Consensus        69 ~v~~l~~sp~-------~~~l~tg~~dg~v~lwd~~~~---~~~~~------------------~~~h~~~v~~l~~~p~  120 (359)
                      ...|+.|...       |+++|.|+.|..|.|||+.-.   .|...                  ..+|+..|.+++|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            3467777432       569999999999999997522   11111                  2268889999999875


Q ss_pred             -CCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCC
Q 040274          121 -GHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKG  193 (359)
Q Consensus       121 -g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  193 (359)
                       .+.||+||.|.+|++||+.++++..++   .+.|.++.|+|..   +++|+.|++|.++|.+.......... .    .
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~----~  329 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-F----D  329 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-e----c
Confidence             456999999999999999999998887   4679999999986   89999999999999775322222222 2    2


Q ss_pred             cceeEEEEccCC-CEEEEEeCCCeEEE
Q 040274          194 YQIGKVSFRPYE-DVLGIGHSMGWSGI  219 (359)
Q Consensus       194 ~~v~~~~~sp~~-~~l~~g~~dg~~~i  219 (359)
                      +.|..+.|.|.. ..++++..||+++-
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~  356 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYY  356 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEe
Confidence            269999999976 45677778888654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.61  E-value=2.5e-14  Score=128.61  Aligned_cols=166  Identities=17%  Similarity=0.249  Sum_probs=134.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      +|++......|+++||.                       .|+++.++....+|++++..|.|.|..+.++.....|...
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            67776667788888876                       8999999999999999999999999999998877777644


Q ss_pred             CC-CeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCC
Q 040274          109 QG-PVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       109 ~~-~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~  179 (359)
                      .+ .|.-+.|+|..+. |.+++.+|.|.+||+....+++.+    ..+...|||+|..   ++++|.|..|.+||.... 
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-  241 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-  241 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-
Confidence            34 4568999997664 677899999999999987777776    4567899999988   788999999999996543 


Q ss_pred             cccccc-ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          180 HNYSRY-MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       180 ~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      .....+ ..|      +.+.++|+++|.+|+.|+..|.+..|..-+
T Consensus       242 ~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  242 ASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cccceeeecC------CcceeeecCCceEEEeecCCceEEEEeccc
Confidence            233222 233      789999999999999999999877764433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=3.8e-14  Score=120.59  Aligned_cols=170  Identities=15%  Similarity=0.206  Sum_probs=124.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~  146 (359)
                      .|++|.|+|.++.|++++.||++++||.........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++..  +.+
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igt   92 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGT   92 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeecc
Confidence            5899999999889999999999999999987554444 6899999999987 46799999999999999998764  444


Q ss_pred             ecCCceeEEEcCC-C-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          147 LTGHAKTLDFSQK-G-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       147 ~~~~v~~~~~s~~-g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      ....+.|+.+++- | ++++|+|++|.+||.+.. .....+...     ..|.++..  .|+.|++|+.+..+.      
T Consensus        93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~~-----kkVy~~~v--~g~~LvVg~~~r~v~------  158 (323)
T KOG1036|consen   93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQG-----KKVYCMDV--SGNRLVVGTSDRKVL------  158 (323)
T ss_pred             CCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccccC-----ceEEEEec--cCCEEEEeecCceEE------
Confidence            4678999999964 3 999999999999997652 222222222     26877765  566777777666444      


Q ss_pred             CCCceeeeccCCCCChhhhhhHHHHHhhhccCCCeeeeCCC
Q 040274          225 SEPNFDSWVANPFETSKQRREKEVHSLLDKLLLETIMLNPS  265 (359)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~e~ev~~ll~~~~~~~i~~~~~  265 (359)
                            +|+........|+++..+     +++..-|.+-|+
T Consensus       159 ------iyDLRn~~~~~q~reS~l-----kyqtR~v~~~pn  188 (323)
T KOG1036|consen  159 ------IYDLRNLDEPFQRRESSL-----KYQTRCVALVPN  188 (323)
T ss_pred             ------EEEcccccchhhhccccc-----eeEEEEEEEecC
Confidence                  444443333334554432     245555666664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.60  E-value=1.8e-13  Score=123.41  Aligned_cols=169  Identities=20%  Similarity=0.299  Sum_probs=123.8

Q ss_pred             eEEEECC-CCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPS-SGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      +...|+| |.+.++++|.                          .|.|++|.++|. ++||.++|.|.||+..+......
T Consensus       204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~  282 (626)
T KOG2106|consen  204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ  282 (626)
T ss_pred             EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE
Confidence            7888999 4556667776                          799999999885 56999999999999988777777


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee------------eEee-----------------c-------
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV------------LQTL-----------------T-------  148 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~------------~~~~-----------------~-------  148 (359)
                      ...|.+.|.+++.-.+|.+| +|+.|..|..||-. .+.            ++++                 .       
T Consensus       283 ~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             eeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            67999999999999999655 59999999999831 111            1111                 0       


Q ss_pred             --------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC----------------------------------ccccc
Q 040274          149 --------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS----------------------------------HNYSR  184 (359)
Q Consensus       149 --------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~----------------------------------~~~~~  184 (359)
                              ...+.++.+|+.  +++++.|+.+++|+-....                                  +....
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee
Confidence                    113566777776  8888889999998822110                                  00111


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +..|.  .+.++++++|+|+|.+||+|+.|+.+.||....+
T Consensus       441 v~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  441 VTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            22222  2457999999999999999999999998754443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.2e-13  Score=128.51  Aligned_cols=170  Identities=13%  Similarity=0.114  Sum_probs=134.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+|+++.+.+.||.+-.                         .|.+++|++ +..|++.+.+|+|.-||+.++++...+.
T Consensus        29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d  107 (691)
T KOG2048|consen   29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNID  107 (691)
T ss_pred             EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEec
Confidence            78889888888777543                         899999995 5577788899999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~  179 (359)
                      ...+.|++++.+|.+..++.|+.||.++.+++..+...+..     .+.+.+++|+|++  +++|+.||.|++||...+.
T Consensus       108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence            99999999999999999999999998888888777654433     4779999999999  7888899999999976553


Q ss_pred             ccccc---cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          180 HNYSR---YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       180 ~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      .....   +..-......-|+++.|-.+ ..|++|.+.|++.+|.+.
T Consensus       188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  188 TLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             eEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence            33211   11111002235788888855 468999999999997553

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.6e-14  Score=124.49  Aligned_cols=138  Identities=18%  Similarity=0.295  Sum_probs=108.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCCeeeEee--cC----Cc
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRKYEVLQTL--TG----HA  151 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~----~v  151 (359)
                      ..++++..+|+|++||..+++.+..|.+|...++.+.|..  .+..+.+|+.||+|++||+|+......+  ..    +-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688899999999999999999999999999999999976  5778999999999999999986543333  21    23


Q ss_pred             eeEEEcCCC-cEEEEc-----CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEE
Q 040274          152 KTLDFSQKG-LLAVGT-----GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGIL  220 (359)
Q Consensus       152 ~~~~~s~~g-l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~  220 (359)
                      .+++..-.+ +++++.     +-.|.+||++.....+..+...   |...|++++|+|.. +.|++|+.||.+.+|
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS---H~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES---HNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh---ccCcceeEEecCCCCCeEEeecccceEEee
Confidence            555555344 666664     4689999988776545444332   34489999999954 899999999998884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.60  E-value=3e-14  Score=132.76  Aligned_cols=169  Identities=12%  Similarity=0.194  Sum_probs=125.2

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-c-
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-L-  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-~-  101 (359)
                      |+++.+|+|+++|++..                            .|+.|+||||+++|++.+.|.++.+|...... . 
T Consensus       529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e  608 (764)
T KOG1063|consen  529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE  608 (764)
T ss_pred             EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence            99999999999999887                            89999999999999999999999999875331 1 


Q ss_pred             --eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC--eeeEee-----cCCceeEEEcCCC------cEEEE-
Q 040274          102 --LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY--EVLQTL-----TGHAKTLDFSQKG------LLAVG-  165 (359)
Q Consensus       102 --~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~--~~~~~~-----~~~v~~~~~s~~g------l~~~~-  165 (359)
                        ......|+..|++++|+|++.+|+|+|.|.+|++|.....  +.+..+     ...|+.++|.|-.      ++++| 
T Consensus       609 ~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl  688 (764)
T KOG1063|consen  609 FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL  688 (764)
T ss_pred             hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence              1235689999999999999999999999999999988776  443332     5678888887732      55655 


Q ss_pred             cCCcEEEEcCCCCCcc-------ccccccccCCCCcceeEEEEccCC----------CEEEEEeCCCeEEEE
Q 040274          166 TGSFAQILGDFSGSHN-------YSRYMGNSMVKGYQIGKVSFRPYE----------DVLGIGHSMGWSGIL  220 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~g~~dg~~~i~  220 (359)
                      ..|.|.+|........       ........+.+...|..+.|.|..          ..|++|+.|..++|+
T Consensus       689 e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~  760 (764)
T KOG1063|consen  689 EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF  760 (764)
T ss_pred             cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEe
Confidence            4699999984311111       111111112255579999999862          234677766666554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=9.7e-15  Score=129.01  Aligned_cols=146  Identities=18%  Similarity=0.260  Sum_probs=115.7

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---  147 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---  147 (359)
                      -+++|+++|..+++|+.||++++|+..+...+.....|.+.|.++.|+|||.+|++.+.| ...|||.+++.++...   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999977777777788999999999999999999999999 8999998876211100   


Q ss_pred             ----------------------------------------cC--------------CceeEEEcCCC--cEEEEcCCcEE
Q 040274          148 ----------------------------------------TG--------------HAKTLDFSQKG--LLAVGTGSFAQ  171 (359)
Q Consensus       148 ----------------------------------------~~--------------~v~~~~~s~~g--l~~~~~d~~i~  171 (359)
                                                              .+              .|++++.|++|  ++.++.+|.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                    01              36889999999  55566799999


Q ss_pred             EEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          172 ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ||+...-......-..    |...|+.+.|+|+.+++++.+.+....++.
T Consensus       307 i~~~~~lq~~~~vk~a----H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEA----HLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEeceeeeeEeehhh----heeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            9996443222222223    445899999999999999988887766653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.60  E-value=8.4e-14  Score=125.55  Aligned_cols=148  Identities=15%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      ....++.+|+...++|++.|+.|++|+  ..+++.+.. -..++.|+.|+|.| .+|.|+..|...+.|..+...+... 
T Consensus       370 elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~  445 (626)
T KOG2106|consen  370 ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT  445 (626)
T ss_pred             ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe
Confidence            678899999999999999999999999  445555433 36788999999999 9999999999999999986554433 


Q ss_pred             -cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          148 -TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       148 -~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                       ..+++++.|+|+|  ++.++.|+.|+||-+..++..+..+..+   ++++|+.+.||+|+++|.+-+.|--+-+|.++
T Consensus       446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~---~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC---SGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee---cCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence             5678999999999  6667789999999987777777776666   44789999999999999999999888888654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=2.8e-14  Score=128.34  Aligned_cols=150  Identities=22%  Similarity=0.348  Sum_probs=125.1

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.+.....|||+++.                        .|.-+.|+|... +|.+++.+|.|.+||+....++..+.
T Consensus       125 t~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~  204 (673)
T KOG4378|consen  125 TYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS  204 (673)
T ss_pred             EEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh
Confidence            77777777888887655                        577899999655 57788999999999999888777654


Q ss_pred             -cCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCc
Q 040274          107 -YHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       107 -~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~  180 (359)
                       .|..+...++|+| +..+|++.|.|..|.+||++.......+  ..+.++++|+++|  |++|+..|.|..||++....
T Consensus       205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence             7999999999999 5677999999999999999976655544  6778999999999  66667789999999988877


Q ss_pred             cccccccccCCCCcceeEEEEccCC
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      ++..+..|..    .|++++|-|.-
T Consensus       285 Pv~v~sah~~----sVt~vafq~s~  305 (673)
T KOG4378|consen  285 PVAVRSAHDA----SVTRVAFQPSP  305 (673)
T ss_pred             CceEeeeccc----ceeEEEeeecc
Confidence            8878777754    79999998864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.59  E-value=3.2e-14  Score=131.49  Aligned_cols=186  Identities=17%  Similarity=0.162  Sum_probs=126.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-----
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSA-----  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~-----  100 (359)
                      |++.|-|....|++++.                         .|-+++|+|. ...|++|+.||.|.|||++-..     
T Consensus       104 fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e  183 (720)
T KOG0321|consen  104 FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE  183 (720)
T ss_pred             EeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH
Confidence            99999994445555433                         7899999994 5689999999999999975221     


Q ss_pred             ----------------------ceEEeecCCCCeEE---EEEecCCCEEEEecC-CCeEEEEEcCCCeeeEee-------
Q 040274          101 ----------------------LLIKMLYHQGPVSA---LAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQTL-------  147 (359)
Q Consensus       101 ----------------------~~~~~~~h~~~v~~---l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~~~-------  147 (359)
                                            .+....+|...|.+   +.+..|...||++|. |+.|+|||++........       
T Consensus       184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~  263 (720)
T KOG0321|consen  184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDK  263 (720)
T ss_pred             HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccC
Confidence                                  01122244445555   555678889999988 999999999975432222       


Q ss_pred             -cC------CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc-cccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          148 -TG------HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY-SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       148 -~~------~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                       ..      .++++.....|  +++.+.|+.|++|++....... ..+.++.  .......-..+||+.+|++|+.|...
T Consensus       264 ~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~--~~sf~vks~lSpd~~~l~SgSsd~~a  341 (720)
T KOG0321|consen  264 YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL--NSSFYVKSELSPDDCSLLSGSSDEQA  341 (720)
T ss_pred             ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc--cceeeeeeecCCCCceEeccCCCcce
Confidence             11      25677777778  7788889999999986643322 2222321  11112223467899999999999876


Q ss_pred             EE--------------------------------EEcCCCCCceeeeccCCCCC
Q 040274          218 GI--------------------------------LVPRSSEPNFDSWVANPFET  239 (359)
Q Consensus       218 ~i--------------------------------~~~gs~~~~~~~~~~~~~~~  239 (359)
                      .+                                +++.+.|..+++|...+...
T Consensus       342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            65                                35567788888888765433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.59  E-value=2.8e-14  Score=135.46  Aligned_cols=148  Identities=16%  Similarity=0.214  Sum_probs=130.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe---ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM---LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .+++++.++.|++.+.|+..|+|.+|++.+|-...+|   ..|.++|++++.+.-++.+++++.+|.+++||.....++.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            7899999999999999999999999999999888787   4899999999999888999999999999999999888777


Q ss_pred             ee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          146 TL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       146 ~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+  ...+.++.++...  ++.+..|-.|.++|+.+. ..+..+.+|..    .|++++|||||+||++++.|+++++|.
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~n----ritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGN----RITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhcccc----ceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            77  4567888887766  566667789999996554 67777888765    899999999999999999999999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=8.2e-14  Score=117.06  Aligned_cols=121  Identities=18%  Similarity=0.319  Sum_probs=96.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------ceeEEEEcCCCCEEEEE--eCCCeEEEE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------RTDLMRVNPFNGVVSLG--HSGGTVTMW   94 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------~v~~l~~sp~~~~l~tg--~~dg~v~lw   94 (359)
                      -.|.|+|+|.+|++-..                                   +|.+++|+|+|..|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            56889999998875332                                   69999999999886554  467799999


Q ss_pred             eCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCeeeEeec-CCceeEEEcCCC--cEEEEc--
Q 040274           95 KPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYEVLQTLT-GHAKTLDFSQKG--LLAVGT--  166 (359)
Q Consensus        95 d~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~~~~~~~-~~v~~~~~s~~g--l~~~~~--  166 (359)
                      |+. +..+..+  +...++.+.|+|+|++|++++.   .|.|.+||+++.+.+.++. ..++.++|||+|  +++++.  
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence            997 5666665  3567889999999999999874   4679999999998888873 447899999999  444443  


Q ss_pred             ----CCcEEEEcC
Q 040274          167 ----GSFAQILGD  175 (359)
Q Consensus       167 ----d~~i~v~d~  175 (359)
                          |+.+.||+.
T Consensus       166 r~~~dng~~Iw~~  178 (194)
T PF08662_consen  166 RLRVDNGFKIWSF  178 (194)
T ss_pred             ceeccccEEEEEe
Confidence                678899984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=1.7e-13  Score=115.21  Aligned_cols=151  Identities=17%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CcceEEee-cCCCCeEEEEEecCCCEEEEe--cCCCeEEEE
Q 040274           71 DLMRVNPFNGVVSLGHS----------GGTVTMWKPTT-SALLIKML-YHQGPVSALAFHPNGHLMATT--GKECKIKIW  136 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~----------dg~v~lwd~~~-~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~--~~d~~i~vw  136 (359)
                      ..|.|+|+|.+|++-..          -|...+|.++. +.++..+. ...++|.+++|+|+|..|+++  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            36889999987655332          13455565532 23444443 345679999999999987554  457799999


Q ss_pred             EcCCCeeeEee-cCCceeEEEcCCC--cEEEEcC---CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE
Q 040274          137 DLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTG---SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       137 d~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      |+. ++.+..+ ..+++.+.|||+|  +++++.+   |.|.+||+... ..+... .|.     .++.++|+|+|++|++
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~-~~~-----~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTF-EHS-----DATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeecc-ccC-----cEEEEEEcCCCCEEEE
Confidence            997 7777777 5568899999999  5555543   67999997533 333222 221     4789999999999999


Q ss_pred             EeCCCeEEEEEcCCCCCceeeeccC
Q 040274          211 GHSMGWSGILVPRSSEPNFDSWVAN  235 (359)
Q Consensus       211 g~~dg~~~i~~~gs~~~~~~~~~~~  235 (359)
                      ++....      -..|+.+++|..+
T Consensus       161 a~t~~r------~~~dng~~Iw~~~  179 (194)
T PF08662_consen  161 ATTSPR------LRVDNGFKIWSFQ  179 (194)
T ss_pred             EEeccc------eeccccEEEEEec
Confidence            876432      1246678888754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=4.4e-14  Score=124.23  Aligned_cols=95  Identities=20%  Similarity=0.407  Sum_probs=78.7

Q ss_pred             eEEEECCCCC-EEEEecc--------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC-
Q 040274           52 ILWILPSSGR-YMAVAGR--------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT-   97 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~--------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~-   97 (359)
                      +++.|++++. .|++||.                                .|+++.|+|+|.+|++|+.+|.|.+|-.. 
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence            6777777666 7777765                                89999999999999999999999999765 


Q ss_pred             -------C--------CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           98 -------T--------SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        98 -------~--------~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                             +        ......+.+|...|..++|+|++.++++++.|..+++||+..|..+..
T Consensus        97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee
Confidence                   2        122345668999999999999999999999999999999876655433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6.4e-15  Score=144.22  Aligned_cols=144  Identities=22%  Similarity=0.329  Sum_probs=109.7

Q ss_pred             ceeEEEEcCCCCE----EEEEeCCCeEEEEeCCC---C---cceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEE
Q 040274           69 RTDLMRVNPFNGV----VSLGHSGGTVTMWKPTT---S---ALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~----l~tg~~dg~v~lwd~~~---~---~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd  137 (359)
                      ..+.++|.+.+..    |+.|..||.|.+||+..   +   ..+.++..|++.|..+.|++. +++||+|+.||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            7899999986654    88899999999999875   2   345567789999999999995 45999999999999999


Q ss_pred             cCCCeeeEee-----cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEE
Q 040274          138 LRKYEVLQTL-----TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVL  208 (359)
Q Consensus       138 ~~~~~~~~~~-----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l  208 (359)
                      +...+.-.++     .+.|.+++|+..-   |.+++.+|.+.|||++.. +.+..+..+.  ....+..+.|+|+. ..|
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~--~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTP--GRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCC--CccceeeeeeCCCCceee
Confidence            9875543333     4568999999876   666777889999998766 3443333332  11358899999987 446


Q ss_pred             EEEeCCC
Q 040274          209 GIGHSMG  215 (359)
Q Consensus       209 ~~g~~dg  215 (359)
                      ++++.|.
T Consensus       223 ~~As~dd  229 (1049)
T KOG0307|consen  223 LVASGDD  229 (1049)
T ss_pred             eeecCCC
Confidence            6666554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.56  E-value=1.1e-13  Score=128.98  Aligned_cols=149  Identities=11%  Similarity=0.218  Sum_probs=117.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGG-----TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-  142 (359)
                      .|.|++.||+++++++++...     .|++|+..+...+..+.+|.-.|+.++|||||++|++++.|+++.+|...... 
T Consensus       527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~  606 (764)
T KOG1063|consen  527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK  606 (764)
T ss_pred             eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence            899999999999999998543     59999999888888899999999999999999999999999999999874321 


Q ss_pred             eeEee---cCC---ceeEEEcCCC--cEEEEcCCcEEEEcCCCCC--cccc-ccccccCCCCcceeEEEEccC-----CC
Q 040274          143 VLQTL---TGH---AKTLDFSQKG--LLAVGTGSFAQILGDFSGS--HNYS-RYMGNSMVKGYQIGKVSFRPY-----ED  206 (359)
Q Consensus       143 ~~~~~---~~~---v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~--~~~~-~~~~~~~~~~~~v~~~~~sp~-----~~  206 (359)
                      .-..|   ..|   |++++|+|++  ++++|.|..|.||......  .... ....    ++..|+.++|.|-     +.
T Consensus       607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~----~~~aVTAv~~~~~~~~e~~~  682 (764)
T KOG1063|consen  607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK----FSLAVTAVAYLPVDHNEKGD  682 (764)
T ss_pred             hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc----cCCceeeEEeeccccccccc
Confidence            11111   222   7999999999  8899999999999855441  1111 1122    4458999999872     34


Q ss_pred             EEEEEeCCCeEEEEE
Q 040274          207 VLGIGHSMGWSGILV  221 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~  221 (359)
                      ++++|-..|-+.+|-
T Consensus       683 ~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  683 VVAVGLEKGEIVLWR  697 (764)
T ss_pred             eEEEEecccEEEEEe
Confidence            788899999887776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=1.1e-13  Score=125.71  Aligned_cols=130  Identities=18%  Similarity=0.355  Sum_probs=102.9

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCC----------------------------CcceEEeecCCCCeEEEEEec
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTT----------------------------SALLIKMLYHQGPVSALAFHP  119 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~----------------------------~~~~~~~~~h~~~v~~l~~~p  119 (359)
                      .|+|+.|-| +...++++..+|.+++||..-                            ..++..+.-..+.|+..+|+|
T Consensus       221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~  300 (636)
T KOG2394|consen  221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP  300 (636)
T ss_pred             ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence            799999999 556788888999999996420                            112333333356789999999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCeeeE---eecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCc
Q 040274          120 NGHLMATTGKECKIKIWDLRKYEVLQ---TLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY  194 (359)
Q Consensus       120 ~g~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  194 (359)
                      ||.+||+.+.||.++|||..+.+++.   ++-+...|++|||||  +++++.|.-|.||.+... +.+..-.+|..    
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkS----  375 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKS----  375 (636)
T ss_pred             CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEecccccc----
Confidence            99999999999999999999876544   446778999999999  788889999999996443 56655566654    


Q ss_pred             ceeEEEEcc
Q 040274          195 QIGKVSFRP  203 (359)
Q Consensus       195 ~v~~~~~sp  203 (359)
                      +|+.++|.|
T Consensus       376 WVs~VaFDp  384 (636)
T KOG2394|consen  376 WVSVVAFDP  384 (636)
T ss_pred             ceeeEeecc
Confidence            999999997

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.55  E-value=1.9e-13  Score=126.48  Aligned_cols=168  Identities=19%  Similarity=0.217  Sum_probs=125.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--eecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCe---
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK--MLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYE---  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~---  142 (359)
                      .|..+.|-|....|++++.|.++++||+.++..+..  +.+|.+.|.+++|.| +...|++|+.||.|.|||++-..   
T Consensus       102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~  181 (720)
T KOG0321|consen  102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA  181 (720)
T ss_pred             eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence            799999999667899999999999999999888766  889999999999999 45678999999999999986422   


Q ss_pred             -----------------eeEee--------------cCCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCcc-------c
Q 040274          143 -----------------VLQTL--------------TGHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHN-------Y  182 (359)
Q Consensus       143 -----------------~~~~~--------------~~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~-------~  182 (359)
                                       +....              .+.|+.+.|-.+. ++++|. |+.|+|||++.....       .
T Consensus       182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence                             00000              1123445554444 777776 999999998764322       2


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE----------------------------------EEcCCCCCc
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI----------------------------------LVPRSSEPN  228 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i----------------------------------~~~gs~~~~  228 (359)
                      ..+..|.. ....+.++.....|.+|...+.|+.|.+                                  +++|+.+..
T Consensus       262 ~~~~t~sk-rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  262 DKYPTHSK-RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             cCccCccc-ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence            23333321 2335888888899999988888988765                                  578888888


Q ss_pred             eeeeccCCC
Q 040274          229 FDSWVANPF  237 (359)
Q Consensus       229 ~~~~~~~~~  237 (359)
                      ..+|.++..
T Consensus       341 ayiw~vs~~  349 (720)
T KOG0321|consen  341 AYIWVVSSP  349 (720)
T ss_pred             eeeeeecCc
Confidence            999987643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.54  E-value=1e-13  Score=123.60  Aligned_cols=157  Identities=17%  Similarity=0.241  Sum_probs=117.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-eEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCee---
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL-LIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEV---  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~---  143 (359)
                      .+..+.|+.+...+++|..=|...+||.+++.. ...+..|...|++++++| ...+|+|+|.|++++|||+|....   
T Consensus       281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence            567788888888888888778999999998755 556678999999999999 455799999999999999997432   


Q ss_pred             --eEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCC---CCCccccccccccCCCCc--ceeEEEEccCCCEEEEEe
Q 040274          144 --LQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDF---SGSHNYSRYMGNSMVKGY--QIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       144 --~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~g~  212 (359)
                        +.++  ...|.+..|||+|  +++.+.|+.|+|||..   ........ ..|...++.  ...-..|.|+..++++|.
T Consensus       361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCccEEEEec
Confidence              3344  3458999999998  9999999999999962   11111111 122221222  244568999999999999


Q ss_pred             CCCeEEEEEcCCCC
Q 040274          213 SMGWSGILVPRSSE  226 (359)
Q Consensus       213 ~dg~~~i~~~gs~~  226 (359)
                      .-.-|.|+.+..+.
T Consensus       440 ~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  440 YPRPIDVFDGNGGQ  453 (498)
T ss_pred             cCcceeEEcCCCCE
Confidence            88877777765544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.54  E-value=1.5e-13  Score=117.56  Aligned_cols=151  Identities=10%  Similarity=0.119  Sum_probs=118.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-e--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS---ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-E--  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~--  142 (359)
                      +|+|.+|++|...++++..+..|.||.....   +...++..|...|++++|+|..+.|++|+.|..-+||....+ .  
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk   91 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK   91 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence            7999999999999999999999999987654   467888899999999999999999999999999999998543 2  


Q ss_pred             e---eEeecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          143 V---LQTLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       143 ~---~~~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      +   +..+...++++.|+|.+  +++++....|.||=. ..+...-.......+..+.|++++|+|++-+|+.|+.|+..
T Consensus        92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~-E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~  170 (361)
T KOG1523|consen   92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY-EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC  170 (361)
T ss_pred             cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE-ecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence            2   33447789999999999  666666677777753 22222211111111244579999999999999999999988


Q ss_pred             EEE
Q 040274          218 GIL  220 (359)
Q Consensus       218 ~i~  220 (359)
                      ++|
T Consensus       171 rVf  173 (361)
T KOG1523|consen  171 RVF  173 (361)
T ss_pred             eEE
Confidence            774

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=3.5e-13  Score=115.39  Aligned_cols=175  Identities=11%  Similarity=0.139  Sum_probs=135.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC-C--cce
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT-S--ALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~-~--~~~  102 (359)
                      +|.+|++|+..+|++-.                          .|++++|+|..+.|++|+.|..-++|.... +  ++.
T Consensus        14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt   93 (361)
T KOG1523|consen   14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT   93 (361)
T ss_pred             eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc
Confidence            89999999999988765                          899999999999999999999999999833 3  566


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee------e-EeecCCceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV------L-QTLTGHAKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~------~-~~~~~~v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                      ..+..++..++++.|+|.++.||+|+....|.||-+..-.-      + ..+...|++++|+|++  +.+++.|+.++||
T Consensus        94 lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen   94 LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF  173 (361)
T ss_pred             eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence            67778999999999999999999999999999997764221      1 1225678999999999  6677789999998


Q ss_pred             cCCCC-----C--------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          174 GDFSG-----S--------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       174 d~~~~-----~--------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ...-.     .        .+...++......++.|..+.|+|.|..|+-.+.|+.+.+.......
T Consensus       174 SayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  174 SAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            73211     0        00111111110245589999999999999999999988887765543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.53  E-value=2.7e-13  Score=123.17  Aligned_cols=150  Identities=18%  Similarity=0.215  Sum_probs=107.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .+-.|+|||.-|+++|.                      +|.|++|.|+.+.++.+. .+.+.|=.+.....+..+.+|.
T Consensus       108 ~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHD  186 (737)
T KOG1524|consen  108 SSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHD  186 (737)
T ss_pred             hhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccC
Confidence            45566677776666665                      667777776554433332 2445555555455566778999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYM  186 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~  186 (359)
                      +.|.++.|+|...++++||.|-..++||.. |..+.+-   .-+|++++|.|+.+++.++-+++++=.            
T Consensus       187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~------------  253 (737)
T KOG1524|consen  187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSS------------  253 (737)
T ss_pred             cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeeeecC------------
Confidence            999999999999999999999999999976 4544443   456999999999855555445555211            


Q ss_pred             cccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       187 ~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                       .   ..+.|..++|||||..+++|+..|.+-+
T Consensus       254 -p---~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  254 -P---RVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             -C---CccceEEEEEcCCCceeeccccCceEEE
Confidence             1   2236999999999999999999997644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.53  E-value=3.3e-14  Score=121.93  Aligned_cols=154  Identities=12%  Similarity=0.196  Sum_probs=121.4

Q ss_pred             ceeEEEEcCC----CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPF----NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~----~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      ....++|+-+    +.++++|+.-|.|+|.|+.++++...+.+|.+.|+.+.++|+ .+++++++.|..|++|++++..+
T Consensus        91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C  170 (385)
T KOG1034|consen   91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC  170 (385)
T ss_pred             ceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence            4555666542    458899999999999999999999999999999999999995 57899999999999999999999


Q ss_pred             eEee------cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC--------------ccc-------cccc---cccCC
Q 040274          144 LQTL------TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS--------------HNY-------SRYM---GNSMV  191 (359)
Q Consensus       144 ~~~~------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~--------------~~~-------~~~~---~~~~~  191 (359)
                      +..+      .++|.+++|+++|  ++++|.|.+|.+|++....              ...       ..++   .... 
T Consensus       171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di-  249 (385)
T KOG1034|consen  171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI-  249 (385)
T ss_pred             EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc-
Confidence            9988      3468999999999  8899999999999975210              000       0111   1111 


Q ss_pred             CCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          192 KGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       192 ~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      |...|-|+.|  .|+++++-+.++.+..|.||--
T Consensus       250 HrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl  281 (385)
T KOG1034|consen  250 HRNYVDCVRW--FGDFILSKSCENAIVCWKPGKL  281 (385)
T ss_pred             ccchHHHHHH--HhhheeecccCceEEEEecchh
Confidence            4445667777  5688998888888888888643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.53  E-value=8.5e-14  Score=129.32  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=114.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-CeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~~~~  147 (359)
                      .|+.++|-|||..|+.+. +..+.+||++.|..+.++++|.+.|++++|+.||..+++|+.|..|.+|...- |-...+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            478899999998877764 45789999999999999999999999999999999999999999999998653 3344455


Q ss_pred             cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          148 TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       148 ~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .+.|.|+.|+|-.  +++++ =+..-+|....  +.+..+..     ...|.+++|..||.+|+.|..+|+++|
T Consensus        93 ~D~IQCMsFNP~~h~LasCs-LsdFglWS~~q--K~V~K~ks-----s~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCS-LSDFGLWSPEQ--KSVSKHKS-----SSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcc-hhhccccChhh--hhHHhhhh-----heeEEEeeecCCCcEEEEeccCceEEe
Confidence            7789999999987  55544 34556786322  23333332     237999999999999999999999887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.52  E-value=2.1e-12  Score=116.04  Aligned_cols=150  Identities=11%  Similarity=0.158  Sum_probs=110.0

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+++|+|++..+ ++++.++.|.+||+.+++.+..+..+.. +..++|+|+++.++++ +.|+.|.+||+.+...+..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            57889999999876 5677889999999999887776665544 5678999999977554 5689999999999888777


Q ss_pred             ec--CCceeEEEcCCC--cEEEEcCC-cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEE
Q 040274          147 LT--GHAKTLDFSQKG--LLAVGTGS-FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGIL  220 (359)
Q Consensus       147 ~~--~~v~~~~~s~~g--l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~  220 (359)
                      +.  ..+.+++|+|+|  +++++.++ .+.+||.... .........     ..+.++.|+|+|.+|++++ .++.+.+|
T Consensus       111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~  184 (300)
T TIGR03866       111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVI  184 (300)
T ss_pred             eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence            74  346889999999  44444443 5677885443 222222111     1467899999999886554 58888888


Q ss_pred             EcCCC
Q 040274          221 VPRSS  225 (359)
Q Consensus       221 ~~gs~  225 (359)
                      ...++
T Consensus       185 d~~~~  189 (300)
T TIGR03866       185 DVATR  189 (300)
T ss_pred             EcCcc
Confidence            77654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.7e-13  Score=125.91  Aligned_cols=148  Identities=14%  Similarity=0.151  Sum_probs=116.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .|..|.||..|.||++...+   ..|.|+++.......-|.-..+.|.++.|+|...+|+.++. ..|++||+.....+.
T Consensus       523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvK  601 (733)
T KOG0650|consen  523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVK  601 (733)
T ss_pred             ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHH
Confidence            56677777777777666543   35666666655444445555678999999999888888766 569999999877666


Q ss_pred             ee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          146 TL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       146 ~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .+   ...+.+++++|.|  +++++.|+.+..||+..+..++..+..|..    .+++++|++.-.++++|+.||.+.|+
T Consensus       602 kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~----avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  602 KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK----AVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh----hhhhhhhccccceeeeecCCCcEEEE
Confidence            65   3468999999988  999999999999998777677777776654    79999999999999999999988775


Q ss_pred             E
Q 040274          221 V  221 (359)
Q Consensus       221 ~  221 (359)
                      .
T Consensus       678 h  678 (733)
T KOG0650|consen  678 H  678 (733)
T ss_pred             e
Confidence            4

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.48  E-value=1.1e-12  Score=122.95  Aligned_cols=166  Identities=17%  Similarity=0.243  Sum_probs=135.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec---CCCEEEEecCCCeEEEEEcCC-Ceee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP---NGHLMATTGKECKIKIWDLRK-YEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p---~g~~l~s~~~d~~i~vwd~~~-~~~~  144 (359)
                      .+.+++.+|++++|++|..-|+++||++........+.+|...|.|+.|+.   ..++||+++.|..|.|||+.. ..++
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~  540 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV  540 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence            799999999999999999999999999998888888999999999999975   356899999999999999732 1111


Q ss_pred             Eee----------------------------------------------------cCCceeEEEcCCC--cEEEEcCCcE
Q 040274          145 QTL----------------------------------------------------TGHAKTLDFSQKG--LLAVGTGSFA  170 (359)
Q Consensus       145 ~~~----------------------------------------------------~~~v~~~~~s~~g--l~~~~~d~~i  170 (359)
                      +++                                                    ...+++++..|+.  +++++.|..|
T Consensus       541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni  620 (1080)
T KOG1408|consen  541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI  620 (1080)
T ss_pred             hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence            111                                                    0124667777876  7788899999


Q ss_pred             EEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------------E
Q 040274          171 QILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------------L  220 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------------~  220 (359)
                      +|||+..+ +....+.+... +.+...-+...|.|-||++.+.|.++.+                              +
T Consensus       621 rif~i~sg-Kq~k~FKgs~~-~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  621 RIFDIESG-KQVKSFKGSRD-HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             EEEecccc-ceeeeeccccc-CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhh
Confidence            99996554 67777766555 5456788899999999999999998876                              6


Q ss_pred             EcCCCCCceeeeccCC
Q 040274          221 VPRSSEPNFDSWVANP  236 (359)
Q Consensus       221 ~~gs~~~~~~~~~~~~  236 (359)
                      ++.++|++|.+|.+..
T Consensus       699 ISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  699 ISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeecCCceEEEEECch
Confidence            7889999999998754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=5.2e-12  Score=110.22  Aligned_cols=108  Identities=23%  Similarity=0.354  Sum_probs=91.4

Q ss_pred             ceeEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCe-EEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGH--SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK-IKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~-i~vwd~~~~~~~~  145 (359)
                      .+.++++|+.+.+++.=+  ..|.|.|||..+-+++..+.+|.+++.+++|+++|.+|||++..|+ |+||.+.+|+.+.
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            455666666677887743  4689999999999999999999999999999999999999999987 7899999999999


Q ss_pred             eec-C----CceeEEEcCCC-cE-EEEcCCcEEEEcCC
Q 040274          146 TLT-G----HAKTLDFSQKG-LL-AVGTGSFAQILGDF  176 (359)
Q Consensus       146 ~~~-~----~v~~~~~s~~g-l~-~~~~d~~i~v~d~~  176 (359)
                      .|. |    .|.+++|+|++ ++ +.|..++|+||.+.
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            993 2    47899999999 55 45556899999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.47  E-value=2.1e-13  Score=126.10  Aligned_cols=168  Identities=14%  Similarity=0.230  Sum_probs=122.5

Q ss_pred             eEEEECC-CCCEEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~   99 (359)
                      .++.|.| |...|+.+++                              .|+++.||| -...|++++.|-+|.+||+.++
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~  710 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA  710 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence            8888888 7788888776                              799999999 5678999999999999999999


Q ss_pred             cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-eeEeecCCc----eeEEEcCCC--cEEEEcC----C
Q 040274          100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-VLQTLTGHA----KTLDFSQKG--LLAVGTG----S  168 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~v----~~~~~s~~g--l~~~~~d----~  168 (359)
                      .....+.+|++.|.+++|+|+|+.++|.+.||+|++|..++++ +++.-++++    -.|.|.-+|  +++++.|    .
T Consensus       711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR  790 (1012)
T KOG1445|consen  711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER  790 (1012)
T ss_pred             hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence            9888999999999999999999999999999999999999864 565555543    467788888  5566655    5


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEeCCCeEEEEE
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHSMGWSGILV  221 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~~~i~~  221 (359)
                      .|.+||...-.  ...+.....-....+.--.+.+|.. ++++|-.|.++.+|-
T Consensus       791 Qv~~Y~Aq~l~--~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  791 QVQMYDAQTLD--LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             hhhhhhhhhcc--CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence            78888843221  0111110000000122234555554 456777788877653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.3e-12  Score=122.15  Aligned_cols=162  Identities=12%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEE--eCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMW--KPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lw--d~~~~~~~~  103 (359)
                      .+..|||||++|++++.                         ...+++|+|||..|++++ .+|.+.||  |+.++. +.
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~  285 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS  285 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE
Confidence            78899999999987643                         345789999999888765 67765555  666554 45


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCC-eeeEeecCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKY-EVLQTLTGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~-~~~~~~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~  180 (359)
                      .+..+...+.++.|+|||..|+.++ .++...||++... .....+.....++.|+|+| .++......+.+||+..+. 
T Consensus       286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~-  364 (429)
T PRK01742        286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLTSGS-  364 (429)
T ss_pred             eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECCCCC-
Confidence            5666777889999999999776554 5777888876532 1122221111567899999 4433333557779975542 


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .......+      ...++.|+|+|++|++++.+|...+|.
T Consensus       365 ~~~lt~~~------~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        365 TEVLSSTF------LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             eEEecCCC------CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            22111111      245678999999999999888776654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.2e-12  Score=119.75  Aligned_cols=151  Identities=19%  Similarity=0.251  Sum_probs=113.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC--------CCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT--------TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~--------~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .|..+.|+|....|++++.||++.+|++.        .-+++.+|.+|.++|.|+++.+++..+++||.||+|+.|++..
T Consensus       296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~  375 (577)
T KOG0642|consen  296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP  375 (577)
T ss_pred             hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence            68899999999999999999999999982        1257899999999999999999999999999999999996542


Q ss_pred             Ce-------------eeEeecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc------------------------
Q 040274          141 YE-------------VLQTLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN------------------------  181 (359)
Q Consensus       141 ~~-------------~~~~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~------------------------  181 (359)
                      ..             ++.-+.+.++.+++|+.-  +++++.||++++|+.......                        
T Consensus       376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~  455 (577)
T KOG0642|consen  376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS  455 (577)
T ss_pred             CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence            11             111123457889999876  999999999999985432110                        


Q ss_pred             -------------------ccccccccC---CCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          182 -------------------YSRYMGNSM---VKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       182 -------------------~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                                         ...+.....   .....+.-+.++|.+.+.++++.++.+++
T Consensus       456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF  515 (577)
T ss_pred             hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence                               000000000   01124666888999999999999998877

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.45  E-value=4.5e-13  Score=117.96  Aligned_cols=142  Identities=15%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSA---------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~---------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      +|..+.|.+++. .|+||+.|..|++|-+..+.         .+..+..|...|+++.|+|+|.+|++|+.+|.|.+|-.
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~   94 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ   94 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence            788899998655 99999999999999876432         23456689999999999999999999999999999965


Q ss_pred             C--------C--------CeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCccee
Q 040274          139 R--------K--------YEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIG  197 (359)
Q Consensus       139 ~--------~--------~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~  197 (359)
                      .        +        ......+.   ..+..++|+|++  +++++.|+.+++||+..+ ........|..    -|.
T Consensus        95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~----yvq  169 (434)
T KOG1009|consen   95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEH----YVQ  169 (434)
T ss_pred             cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecccccc----ccc
Confidence            4        2        11122223   448999999999  788889999999997655 55666666644    799


Q ss_pred             EEEEccCCCEEEEEeCCC
Q 040274          198 KVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       198 ~~~~sp~~~~l~~g~~dg  215 (359)
                      .++|.|-++++++-+.|.
T Consensus       170 gvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             eeecchhhhhhhhhccCc
Confidence            999999999999888876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.45  E-value=2.6e-13  Score=128.93  Aligned_cols=175  Identities=19%  Similarity=0.342  Sum_probs=133.5

Q ss_pred             Hhhhhccc----eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040274           44 KVEKNLVH----ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKP   96 (359)
Q Consensus        44 ~~e~ll~~----~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~   96 (359)
                      ..-.|+-+    ||..|...|+++++|++                       .|+.++.+..+.+++++|.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            33444554    99999999999999998                       7899999999999999999999999999


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC--------------CeeeEe----------------
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK--------------YEVLQT----------------  146 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~--------------~~~~~~----------------  146 (359)
                      .++.++..+.+|++.|++++|+|-.    +.+.||++++||.+-              +..+..                
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999953    778899999998650              000000                


Q ss_pred             -----------------------------------------------------e---cCCceeEEEcCCC---cEEEEcC
Q 040274          147 -----------------------------------------------------L---TGHAKTLDFSQKG---LLAVGTG  167 (359)
Q Consensus       147 -----------------------------------------------------~---~~~v~~~~~s~~g---l~~~~~d  167 (359)
                                                                           +   ...+..+.++|-.   ..+++.|
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence                                                                 0   0012345555654   5667788


Q ss_pred             CcEEEEcCCCCCccccccc-cccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCc
Q 040274          168 SFAQILGDFSGSHNYSRYM-GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPN  228 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~  228 (359)
                      |...|||+..+ .....|. +|     +.+....||++|..++....-|.+.|+-.|.++..
T Consensus       418 gst~iwdi~eg-~pik~y~~gh-----~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  418 GSTIIWDIWEG-IPIKHYFIGH-----GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CceEeeecccC-Ccceeeeccc-----ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            99999996555 3444333 33     25788899999999999988898888877776544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.1e-12  Score=120.75  Aligned_cols=168  Identities=15%  Similarity=0.207  Sum_probs=132.2

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      ..+.||..|.||++...                          .|.++.|+|...+|++++. ..|+|||+.....+..+
T Consensus       525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL  603 (733)
T KOG0650|consen  525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL  603 (733)
T ss_pred             ceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH
Confidence            88999999999997543                          7899999998888888765 58999999988777777


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeEee---cCCceeEEEcCCC-cE-EEEcCCcEEEEcCC---
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQTL---TGHAKTLDFSQKG-LL-AVGTGSFAQILGDF---  176 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~~~---~~~v~~~~~s~~g-l~-~~~~d~~i~v~d~~---  176 (359)
                      ......|.+++.+|.|..|+.++.|+.+..||+.-+ ++.+++   ...+++++|++.- |+ +++.||++.||.-.   
T Consensus       604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            777788999999999999999999999999999854 344444   4558999999988 54 55556998887511   


Q ss_pred             ---CCC--ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          177 ---SGS--HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       177 ---~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                         .+.  -++..+.+|.......|..+.|+|...||++++.||.+++|
T Consensus       684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence               111  11234456644233458899999999999999999998886

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.44  E-value=5.2e-12  Score=108.69  Aligned_cols=162  Identities=16%  Similarity=0.277  Sum_probs=117.5

Q ss_pred             EEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcceEEeecCCC
Q 040274           53 LWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSL-GHSGGTVTMWKPTTSALLIKMLYHQG  110 (359)
Q Consensus        53 ~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~t-g~~dg~v~lwd~~~~~~~~~~~~h~~  110 (359)
                      -.+|||+|+|+|++++                     .|.-+.|..|.-++++ ...|+.|.+|++...+--..+.....
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            3579999999999987                     7888999988776555 46788999999998888888888888


Q ss_pred             CeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEc--C-----------------
Q 040274          111 PVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGT--G-----------------  167 (359)
Q Consensus       111 ~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~--d-----------------  167 (359)
                      ++.+++|||||+. |.++.-|-.|.||.+.+.+....-  ...+..++|+||| +.+...  |                 
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~  172 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLK  172 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHH
Confidence            9999999999965 556667889999999876553322  3445777888887 333221  1                 


Q ss_pred             ------------------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          168 ------------------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       168 ------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                                        +.+-|||..-. -.+..|..     +-.+-.+.|+|.+++|++|+.|+.++|+
T Consensus       173 ~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aYe~-----~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  173 EFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAYER-----GLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             hcCCCcccccCceECCCCcEEEEecchhh-heeeeeee-----ccceeEEEeccccceEEeeccchhhhhh
Confidence                              12445552111 11112221     1258889999999999999999988874

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=4.9e-12  Score=111.06  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=135.4

Q ss_pred             eEEEECCCCCEEEEecc------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~  101 (359)
                      ..|.||.+|++|++||.                              .|.|++|+..+.++++|..+|+|.+.|+.+.+.
T Consensus        60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs  139 (609)
T KOG4227|consen   60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS  139 (609)
T ss_pred             ceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccccee
Confidence            78999999999999998                              799999999999999999999999999999988


Q ss_pred             eEEeec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-ee-----EeecCCceeEEEcCCC---cEEEEcCCcE
Q 040274          102 LIKMLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-VL-----QTLTGHAKTLDFSQKG---LLAVGTGSFA  170 (359)
Q Consensus       102 ~~~~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-~~-----~~~~~~v~~~~~s~~g---l~~~~~d~~i  170 (359)
                      +..+..  ..+.|+.+..+|..+.|++.+.++.|.+||++... ++     ..+.....++.|+|-.   +++.+..+.+
T Consensus       140 i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  140 IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCC
Confidence            877642  23599999999999999999999999999998644 22     2224456889999987   5556667889


Q ss_pred             EEEcCCCCCccccccccccCCC--CcceeEEEEccCCCEEEEEe-------------------C----CCeEEE------
Q 040274          171 QILGDFSGSHNYSRYMGNSMVK--GYQIGKVSFRPYEDVLGIGH-------------------S----MGWSGI------  219 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~g~-------------------~----dg~~~i------  219 (359)
                      .+||.+.....+..+....+.+  ...-+++.|+|.|..|++--                   .    +|+..+      
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~  299 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSM  299 (609)
T ss_pred             CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeee
Confidence            9999765443333322221101  11235667777776544211                   1    122211      


Q ss_pred             -------EEcCCCCCceeeeccC
Q 040274          220 -------LVPRSSEPNFDSWVAN  235 (359)
Q Consensus       220 -------~~~gs~~~~~~~~~~~  235 (359)
                             +.+|+.+-++.+|.+.
T Consensus       300 ~F~~D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  300 TFIDDYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             eeecceeeeccCcccceEEEecC
Confidence                   6889999999999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.4e-11  Score=107.31  Aligned_cols=144  Identities=15%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-CeeeE-
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQ-  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~~-  145 (359)
                      .|++|.|++||..+++++. |..|.|||++++..+....-..+.++-+.|||||.+|++++-|+..++|+... ..... 
T Consensus       197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW  276 (445)
T ss_pred             eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence            8999999999999999885 57899999999877655544467789999999999999999999999995543 32222 


Q ss_pred             ee-cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccc--------------------cccccccCCCCcceeEEEE
Q 040274          146 TL-TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNY--------------------SRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       146 ~~-~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~  201 (359)
                      .+ .+.|...+|+|.|   +++++..  -.+|.+...++..                    ....+... -+..+.+++|
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l-~cgeaq~law  353 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL-CCGEAQCLAW  353 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc-ccCccceeeE
Confidence            22 6789999999999   3344333  3344332211110                    00111111 2456889999


Q ss_pred             ccCCCEEEEEeCCC
Q 040274          202 RPYEDVLGIGHSMG  215 (359)
Q Consensus       202 sp~~~~l~~g~~dg  215 (359)
                      .|.|.+|++....+
T Consensus       354 DpsGeyLav~fKg~  367 (445)
T KOG2139|consen  354 DPSGEYLAVIFKGQ  367 (445)
T ss_pred             CCCCCEEEEEEcCC
Confidence            99999999876554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.42  E-value=2.1e-11  Score=111.68  Aligned_cols=169  Identities=15%  Similarity=0.211  Sum_probs=113.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~  103 (359)
                      ..+.++|+|++|++++.                           .+.+++++|+++++++++ .++.|.+||+.+...+.
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            67889999998887653                           346778999998886555 56899999997632221


Q ss_pred             -------EeecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCC--C--eeeEeec---C------CceeEEEcCCC--
Q 040274          104 -------KMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRK--Y--EVLQTLT---G------HAKTLDFSQKG--  160 (359)
Q Consensus       104 -------~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~--~--~~~~~~~---~------~v~~~~~s~~g--  160 (359)
                             .... ......+.|+|+|+++++++. ++.|.+||+..  +  +.+..+.   .      ....+.++|+|  
T Consensus       163 ~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        163 AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence                   1112 234578999999999988776 89999999973  2  2333331   1      12358899999  


Q ss_pred             cEEEE-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 040274          161 LLAVG-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSGILVPR  223 (359)
Q Consensus       161 l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~~g  223 (359)
                      ++++. .++.|.+|++....... .+..+.. .+.....+.|+|+|++|++++. ++.+.+|...
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVL-SFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeE-EEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            44433 36899999975432222 1222211 1124567899999999998775 6777776543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.41  E-value=1.2e-11  Score=115.27  Aligned_cols=145  Identities=14%  Similarity=0.180  Sum_probs=110.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee---cCCCCeEEEEEecCC-----CEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML---YHQGPVSALAFHPNG-----HLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~p~g-----~~l~s~~~d~~i~vwd~~~  140 (359)
                      .|.+++|..||++++.|..||+|.+-+-. +++...+.   +..++|++++|+|+.     ..+++.....++.+|.+. 
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-  211 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-  211 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-
Confidence            79999999999999999999999998644 44444443   467899999999953     357777777888888765 


Q ss_pred             CeeeE---eecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          141 YEVLQ---TLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       141 ~~~~~---~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |+.+-   .+.-...|+.+.++|  ++.||.|+.+.+|- +.+ -...++...    ...|+++...|++++++.|+.||
T Consensus       212 G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G-vrLGTvg~~----D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  212 GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG-VRLGTVGEQ----DSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC-eEEeecccc----ceeEEEEEEccCCceEEEEEccC
Confidence            33332   223346789999999  78899999999995 444 233333332    23899999999999999999999


Q ss_pred             eEEEEE
Q 040274          216 WSGILV  221 (359)
Q Consensus       216 ~~~i~~  221 (359)
                      ++..|.
T Consensus       286 TiACyN  291 (1081)
T KOG1538|consen  286 TIACYN  291 (1081)
T ss_pred             eeehhh
Confidence            886653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=2.5e-11  Score=105.00  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=114.6

Q ss_pred             ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcceE--EeecCC-CCeEEEEEecCCCEEEEecC----CCeEEEEEcC
Q 040274           69 RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSALLI--KMLYHQ-GPVSALAFHPNGHLMATTGK----ECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~~~~--~~~~h~-~~v~~l~~~p~g~~l~s~~~----d~~i~vwd~~  139 (359)
                      .++.+.|..  ....+.+|+.||+|++||+++.....  .+..|. .+..+++.+..++.+++|+.    |-.|.+||+|
T Consensus        72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR  151 (376)
T KOG1188|consen   72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVR  151 (376)
T ss_pred             cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEec
Confidence            678888866  45679999999999999999765433  344555 46778887778888888764    6679999999


Q ss_pred             CCee-eEee----cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEE
Q 040274          140 KYEV-LQTL----TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGI  210 (359)
Q Consensus       140 ~~~~-~~~~----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~  210 (359)
                      ..+. +..+    .+.|++++|+|..   +++++.||-|.|||+..... -..+..- ..+++.|.++.|+..+ +.|.+
T Consensus       152 ~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~v-iN~~sSI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  152 SEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-EDALLHV-INHGSSIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             cccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-hhhHHHh-hcccceeeeeeeecCCcceEEE
Confidence            8654 6555    4559999999987   88999999999999754422 2222111 1145579999999887 33555


Q ss_pred             EeCCCeEEEEEcCCCCCceeeeccCCCCC
Q 040274          211 GHSMGWSGILVPRSSEPNFDSWVANPFET  239 (359)
Q Consensus       211 g~~dg~~~i~~~gs~~~~~~~~~~~~~~~  239 (359)
                      -+......+|.-..++  -.+|.-+|...
T Consensus       230 lTH~Etf~~~ele~~~--~~~~~~~~~~~  256 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGS--EETWLENPDVS  256 (376)
T ss_pred             EEccCceeEEEccCCC--hhhcccCccch
Confidence            5555545555443333  33444444333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=3.3e-11  Score=114.12  Aligned_cols=157  Identities=10%  Similarity=0.104  Sum_probs=107.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLG-HSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg-~~dg--~v~lwd~~~~~~~~  103 (359)
                      .+..|||||+.|++.+.                         .+..+.|+|||..|+.. +.+|  .|++||+.++... 
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-
Confidence            68999999999986432                         35568999999988765 4444  5889999887654 


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCC-C--eEEEEEcCCCeeeEe-e-cCCceeEEEcCCC--cEEEEcC---CcEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKE-C--KIKIWDLRKYEVLQT-L-TGHAKTLDFSQKG--LLAVGTG---SFAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d-~--~i~vwd~~~~~~~~~-~-~~~v~~~~~s~~g--l~~~~~d---~~i~v~  173 (359)
                      .+..+...+..+.|+|||+.|+.++.+ +  .|+++|+.++..... . .....++.|+|+|  ++.++.+   ..|.+|
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence            344445567899999999988776654 3  466667776654222 2 2345679999999  4444432   358888


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      |+..+.  ...+... .    ...+..|+|||.+|+.++.++.
T Consensus       361 dl~~g~--~~~Lt~~-~----~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        361 DLATGG--VQVLTDT-F----LDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ECCCCC--eEEeCCC-C----CCCCceECCCCCEEEEEEcCCC
Confidence            865442  2222211 1    2456789999999999888764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=7.4e-12  Score=114.63  Aligned_cols=147  Identities=13%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC------CC----cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT------TS----ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~------~~----~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      +|.|+++.+.+..+++|+.||+|+.|++.      ..    .....+.||++.|+.+++|+....|++|+.||++++|+.
T Consensus       346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            89999999999999999999999999543      21    223457799999999999999889999999999999986


Q ss_pred             CCCeeeEee---------------------------------------------c----------CCceeEEEcCCC--c
Q 040274          139 RKYEVLQTL---------------------------------------------T----------GHAKTLDFSQKG--L  161 (359)
Q Consensus       139 ~~~~~~~~~---------------------------------------------~----------~~v~~~~~s~~g--l  161 (359)
                      ....+ .+|                                             .          ..+.-+.++|.+  .
T Consensus       426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~  504 (577)
T KOG0642|consen  426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT  504 (577)
T ss_pred             CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence            43222 000                                             0          013456666766  5


Q ss_pred             EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          162 LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       162 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +++..++.|+++|..++ ..+.....|..    .++++++.|+|-+|++|+.||.+.+|.
T Consensus       505 ~~~hed~~Ir~~dn~~~-~~l~s~~a~~~----svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  505 FTAHEDRSIRFFDNKTG-KILHSMVAHKD----SVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             EecccCCceeccccccc-ccchheeeccc----eecceeecCCCceEEeecCCceeehhh
Confidence            66667889999995444 55555555543    799999999999999999888666553

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.8e-11  Score=106.59  Aligned_cols=140  Identities=16%  Similarity=0.353  Sum_probs=101.3

Q ss_pred             ceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC----cc----------eEEeecCCCCeEEEEEecCCCEEEEecC-CCe
Q 040274           69 RTDLMRVNPFN-GVVSLGHSGGTVTMWKPTTS----AL----------LIKMLYHQGPVSALAFHPNGHLMATTGK-ECK  132 (359)
Q Consensus        69 ~v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~----~~----------~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~  132 (359)
                      .|+||+|-|.+ ..|+.|+. +.|++|.....    .+          +....+| .+|+++.|++||..+++++- |..
T Consensus       142 nvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             ceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence            89999999954 56777765 56889975421    11          1112244 68999999999999999885 678


Q ss_pred             EEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          133 IKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       133 i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      |.|||..++..+.-.   .+.++-+.|||||  +++++.|+..++|+.... .-.......   .+ .|...+|+|+|++
T Consensus       220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~-wt~erw~lg---sg-rvqtacWspcGsf  294 (445)
T KOG2139|consen  220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS-WTKERWILG---SG-RVQTACWSPCGSF  294 (445)
T ss_pred             EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc-ceecceecc---CC-ceeeeeecCCCCE
Confidence            999999998754433   4567899999999  889999999999974333 222222222   12 7999999999998


Q ss_pred             EEEEeCCC
Q 040274          208 LGIGHSMG  215 (359)
Q Consensus       208 l~~g~~dg  215 (359)
                      |+.++...
T Consensus       295 LLf~~sgs  302 (445)
T KOG2139|consen  295 LLFACSGS  302 (445)
T ss_pred             EEEEEcCC
Confidence            87665543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=4.1e-11  Score=104.65  Aligned_cols=147  Identities=17%  Similarity=0.203  Sum_probs=109.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee---cCCCCeEEEEEecCCCEEEEec--CCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML---YHQGPVSALAFHPNGHLMATTG--KECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~  143 (359)
                      +|.++.++.+  .|+++-. ..|+|||+++.+.+.++.   .+...+.++++++.+.|++.-+  ..|.|.+||..+.++
T Consensus        89 ~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~  165 (391)
T KOG2110|consen   89 SILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP  165 (391)
T ss_pred             ceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence            6777777653  4444443 459999999998887765   3455577777777778888643  368999999999888


Q ss_pred             eEee---cCCceeEEEcCCC--cEEEEcCC-cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          144 LQTL---TGHAKTLDFSQKG--LLAVGTGS-FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       144 ~~~~---~~~v~~~~~s~~g--l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      +..+   .+.+-+++|+++|  +++++..| .|+||.+..+........+-   ....|.+++|+|++.+|++.+..+++
T Consensus       166 v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  166 VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---YPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---eeeEEEEEEECCCCCeEEEecCCCeE
Confidence            8777   6779999999999  45555555 56899976664433322222   23479999999999999999999999


Q ss_pred             EEEE
Q 040274          218 GILV  221 (359)
Q Consensus       218 ~i~~  221 (359)
                      .||-
T Consensus       243 HiFK  246 (391)
T KOG2110|consen  243 HIFK  246 (391)
T ss_pred             EEEE
Confidence            9874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=2.9e-12  Score=116.88  Aligned_cols=152  Identities=14%  Similarity=0.203  Sum_probs=116.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCCe---
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRKYE---  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~---  142 (359)
                      -|+|+.|+.+|.+|++||.|-.+.|||+-..+.+..+. +|...|.++.|-|  +...+++|..|..|++||+...+   
T Consensus        52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~  131 (758)
T KOG1310|consen   52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG  131 (758)
T ss_pred             eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence            58999999999999999999999999999888877766 8999999999998  56789999999999999998521   


Q ss_pred             -------eeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccc------ccccccCCCCcceeEEEEcc
Q 040274          143 -------VLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYS------RYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       143 -------~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~~~~~~v~~~~~sp  203 (359)
                             .+..+   ...|..++-.|++   +++++.||+|+-||++.......      .+..... .--...|+..+|
T Consensus       132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-~lielk~ltisp  210 (758)
T KOG1310|consen  132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-QLIELKCLTISP  210 (758)
T ss_pred             cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch-hhheeeeeeecC
Confidence                   12222   2346778888888   89999999999999876321111      1111000 011467889999


Q ss_pred             CC-CEEEEEeCCCeEEEEE
Q 040274          204 YE-DVLGIGHSMGWSGILV  221 (359)
Q Consensus       204 ~~-~~l~~g~~dg~~~i~~  221 (359)
                      .. .+|++|+.+-+.++|.
T Consensus       211 ~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  211 SRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             CCCceEEecCCCchhhhhh
Confidence            65 6789999999888865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.38  E-value=1e-11  Score=105.21  Aligned_cols=165  Identities=13%  Similarity=0.191  Sum_probs=119.3

Q ss_pred             ceeEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCc----ceEEee-----cCCCCeEEEEEec-CCCEEEEecCCCeE
Q 040274           69 RTDLMRVNPFNG-----VVSLGHSGGTVTMWKPTTSA----LLIKML-----YHQGPVSALAFHP-NGHLMATTGKECKI  133 (359)
Q Consensus        69 ~v~~l~~sp~~~-----~l~tg~~dg~v~lwd~~~~~----~~~~~~-----~h~~~v~~l~~~p-~g~~l~s~~~d~~i  133 (359)
                      +++.+.|.|+..     +|+|++  ..+++|.+....    +...+.     .+..++++..|+. +.+++.+++-|.++
T Consensus        98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC  175 (364)
T KOG0290|consen   98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC  175 (364)
T ss_pred             CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence            899999999763     455543  589999987421    111111     3567899999987 78899999999999


Q ss_pred             EEEEcCCCee--eEe-e---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC
Q 040274          134 KIWDLRKYEV--LQT-L---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       134 ~vwd~~~~~~--~~~-~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      .|||+.++..  +.+ +   ...|.+++|...|   ++++|.||.|++||++........|....  +..+...++|++.
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--~~~pLlRLswnkq  253 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--PSTPLLRLSWNKQ  253 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC--CCCcceeeccCcC
Confidence            9999998733  222 2   5679999999966   88999999999999887655555555442  3457889999985


Q ss_pred             C-CEEEEEeCCCe-EEE--------------------------------EEcCCCCCceeeeccCCC
Q 040274          205 E-DVLGIGHSMGW-SGI--------------------------------LVPRSSEPNFDSWVANPF  237 (359)
Q Consensus       205 ~-~~l~~g~~dg~-~~i--------------------------------~~~gs~~~~~~~~~~~~~  237 (359)
                      . +++|+-..|+. +.|                                +.++++|...-+|+.+..
T Consensus       254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            4 66776665553 111                                566667888899998643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.37  E-value=3.7e-12  Score=115.91  Aligned_cols=89  Identities=16%  Similarity=0.296  Sum_probs=79.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .|+.++|+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|+|||+|+++|+.|.-|.||.+...+.+..- 
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence            7899999999999999999999999999998887777777788999999999999999999999999999887777665 


Q ss_pred             --cCCceeEEEc
Q 040274          148 --TGHAKTLDFS  157 (359)
Q Consensus       148 --~~~v~~~~~s  157 (359)
                        +..|+.++|.
T Consensus       372 GHkSWVs~VaFD  383 (636)
T KOG2394|consen  372 GHKSWVSVVAFD  383 (636)
T ss_pred             ccccceeeEeec
Confidence              3446777776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=1.6e-10  Score=105.83  Aligned_cols=172  Identities=9%  Similarity=0.040  Sum_probs=111.7

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSA----  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~----  100 (359)
                      ..+.++|||++|++++.                          ....++|+|++++|++++ .++.|.+|++.+..    
T Consensus        38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~  117 (330)
T PRK11028         38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA  117 (330)
T ss_pred             ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence            56788888888766543                          346799999999888876 48899999987432    


Q ss_pred             ceEEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCeeeE-------ee--cCCceeEEEcCCC--cEEEEc-C
Q 040274          101 LLIKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEVLQ-------TL--TGHAKTLDFSQKG--LLAVGT-G  167 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~~~-------~~--~~~v~~~~~s~~g--l~~~~~-d  167 (359)
                      .+..+ .+.....+++++|+|+++++++ .++.|.+||+.+...+.       ..  ...+..+.|+|+|  ++++.. +
T Consensus       118 ~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~  196 (330)
T PRK11028        118 PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN  196 (330)
T ss_pred             ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence            22222 2334467889999999886555 56999999998632221       11  2345789999999  444443 7


Q ss_pred             CcEEEEcCCCC-Cc--ccccccccc--CCCCcceeEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 040274          168 SFAQILGDFSG-SH--NYSRYMGNS--MVKGYQIGKVSFRPYEDVLGIGHS-MGWSGILVPRS  224 (359)
Q Consensus       168 ~~i~v~d~~~~-~~--~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~~gs  224 (359)
                      +.|.+|++... +.  ....+....  .........+.|+|+|++|+++.. ++.+.+|....
T Consensus       197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            99999997532 11  111111110  001112346889999999988854 56677765533

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.36  E-value=6.2e-11  Score=110.15  Aligned_cols=150  Identities=28%  Similarity=0.457  Sum_probs=121.1

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCeeeE-
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYEVLQ-  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~~~~-  145 (359)
                      .|.++.|+|++.++++++. |+.+.+|++.++..+..+.+|...|.+++|+|++. ++++++.|+.|.+||...+..+. 
T Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~  236 (466)
T COG2319         157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS  236 (466)
T ss_pred             cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee
Confidence            7889999999998888885 99999999998888888989999999999999998 56666999999999998777777 


Q ss_pred             eecCCcee-E-EEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          146 TLTGHAKT-L-DFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       146 ~~~~~v~~-~-~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+.++... + .|+|++  +++++.++.+++|++.........+..    +...|.++.|+|++..+++++.++.+.+|.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~  312 (466)
T COG2319         237 TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG----HSSSVLSVAFSPDGKLLASGSSDGTVRLWD  312 (466)
T ss_pred             ecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec----CCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            46544332 2 799998  566888999999997655432223323    344899999999988888888888778883


Q ss_pred             c
Q 040274          222 P  222 (359)
Q Consensus       222 ~  222 (359)
                      .
T Consensus       313 ~  313 (466)
T COG2319         313 L  313 (466)
T ss_pred             c
Confidence            3

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.35  E-value=8.3e-12  Score=104.42  Aligned_cols=148  Identities=14%  Similarity=0.170  Sum_probs=113.0

Q ss_pred             ceeEEEEcC-CCC--EEEEEeCCCeEEEEeCCCCc----------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEE
Q 040274           69 RTDLMRVNP-FNG--VVSLGHSGGTVTMWKPTTSA----------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI  135 (359)
Q Consensus        69 ~v~~l~~sp-~~~--~l~tg~~dg~v~lwd~~~~~----------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~v  135 (359)
                      .+.|..+.. ++.  ++++|-.+|.|.+||+.++.          .+.....|..+|.++.|.+.-..=++++.+..+..
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~  231 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM  231 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence            577777544 333  46677889999999999873          33344579999999999886555678888888999


Q ss_pred             EEcCC--Cee----eEee-cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          136 WDLRK--YEV----LQTL-TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       136 wd~~~--~~~----~~~~-~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      |.+..  +.+    ..++ ...+..+.+-||+  ++++|+|+.|+||+.++. .++..+..|..    .|++++|+|+..
T Consensus       232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsa----gvn~vAfspd~~  306 (323)
T KOG0322|consen  232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSA----GVNAVAFSPDCE  306 (323)
T ss_pred             eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhhhhhc----ceeEEEeCCCCc
Confidence            98864  322    1122 3347889999999  788999999999996554 56666666654    899999999999


Q ss_pred             EEEEEeCCCeEEEEE
Q 040274          207 VLGIGHSMGWSGILV  221 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~  221 (359)
                      ++|.++.|+.|++|.
T Consensus       307 lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  307 LMAAASKDARISLWK  321 (323)
T ss_pred             hhhhccCCceEEeee
Confidence            999999999888874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.35  E-value=2.3e-11  Score=115.89  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=83.9

Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC-CCeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCC
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR-KYEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDF  176 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~-~~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~  176 (359)
                      .+..|.++|+++.++|=+..++.++.|.+|+||... ...++..+   ...+++++|||.-   ++++..+|.|.+||+.
T Consensus       393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            344678899999999966665555559999999887 55666666   3458999999987   6667779999999976


Q ss_pred             CCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          177 SGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ...  ..+...+.. .....+.+.|++.|++|++|...|.+.++.
T Consensus       473 ~~~--~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  473 QDD--EEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             ccc--cCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            542  222222211 233577888999999999999998666654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=6.3e-11  Score=112.26  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEE-EEeCCCeEEEEe--CCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVS-LGHSGGTVTMWK--PTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~-tg~~dg~v~lwd--~~~~~~~~  103 (359)
                      .+.+|||||+.|++.+.                         .+.+.+|+|||..|+ +.+.+|...||.  +.++. +.
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~  277 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR  277 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence            67899999999987653                         345789999998876 456777766665  44443 45


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-CCeEEEE--EcCCCeeeE-eec-CCceeEEEcCCC--cEEEEcCC---cEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIW--DLRKYEVLQ-TLT-GHAKTLDFSQKG--LLAVGTGS---FAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vw--d~~~~~~~~-~~~-~~v~~~~~s~~g--l~~~~~d~---~i~v~  173 (359)
                      .+..+.+.+.++.|+|||+.|+.++. ++...+|  |+.++.... ++. ......+|||+|  ++.++.++   .|.+|
T Consensus       278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~  357 (427)
T PRK02889        278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ  357 (427)
T ss_pred             ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            55556666778899999998876554 4555555  444444322 222 234568999999  44444333   69999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |+..+. .. .+... .    ....+.|+|||+.|+.++.++
T Consensus       358 d~~~g~-~~-~lt~~-~----~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        358 DLATGQ-VT-ALTDT-T----RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ECCCCC-eE-EccCC-C----CccCceECCCCCEEEEEEecC
Confidence            965542 22 22221 1    346789999999988877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.34  E-value=5.6e-11  Score=113.25  Aligned_cols=147  Identities=16%  Similarity=0.153  Sum_probs=104.8

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc--eEE----eecCCCCeEEEEEecCCC--EEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSAL--LIK----MLYHQGPVSALAFHPNGH--LMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~--~~~----~~~h~~~v~~l~~~p~g~--~l~s~~~d~~i~vwd~~  139 (359)
                      .|+|+.|+| +..+++.|+.+|.|.+||+..+..  ...    ...|..+|+.+.|..+..  -|++++.||.|..|+++
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            899999999 667888899999999999986643  221    226899999999976544  49999999999999987


Q ss_pred             CCee-eEee--------------cCCceeEEEcCCC---cEEEEcCCcEEEEc---CCCCC----ccccccccccCCCCc
Q 040274          140 KYEV-LQTL--------------TGHAKTLDFSQKG---LLAVGTGSFAQILG---DFSGS----HNYSRYMGNSMVKGY  194 (359)
Q Consensus       140 ~~~~-~~~~--------------~~~v~~~~~s~~g---l~~~~~d~~i~v~d---~~~~~----~~~~~~~~~~~~~~~  194 (359)
                      .... ....              ...++++.|.+..   ++.|+.+|.|.-=+   .....    +....+..    |.+
T Consensus       324 ~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~----h~g  399 (555)
T KOG1587|consen  324 MLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT----HIG  399 (555)
T ss_pred             ccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc----cCc
Confidence            5332 1111              1236889998876   88888889887622   11111    11222333    445


Q ss_pred             ceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          195 QIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       195 ~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      +|+++.++|.+.-+...+.|.+++|
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vri  424 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRI  424 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEe
Confidence            8999999999876666666888777

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.34  E-value=1.1e-12  Score=124.92  Aligned_cols=145  Identities=17%  Similarity=0.220  Sum_probs=115.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .|.|..|...|.+|++|+.|..|.||...+..++..+.||.+.|+.++.+.+..++++++.|..|++|-+..+.++..+ 
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr  271 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR  271 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence            7999999999999999999999999999999999999999999999999999889999999999999999999987777 


Q ss_pred             --cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          148 --TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       148 --~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                        .|.|++++|+|.  .+.+.||++++||.+.......+-+.... .+..+.++.|...+.-+++|+.++.
T Consensus       272 ghtgavtaiafsP~--~sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  272 GHTGAVTAIAFSPR--ASSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             ccccceeeeccCcc--ccCCCCCceEeccccccccccCCCCCCcc-cccceeeeeccccccccccccCCcc
Confidence              566999999995  47788999999996522111111111000 1234666666666666666666664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.6e-10  Score=101.73  Aligned_cols=152  Identities=13%  Similarity=0.115  Sum_probs=117.1

Q ss_pred             ceeEEEEcCCCC-EEEEEeCC--CeEEEEeCCCCcceEEeecCC---------CCeEEEEEecC--CCEEEEecCCCeEE
Q 040274           69 RTDLMRVNPFNG-VVSLGHSG--GTVTMWKPTTSALLIKMLYHQ---------GPVSALAFHPN--GHLMATTGKECKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~d--g~v~lwd~~~~~~~~~~~~h~---------~~v~~l~~~p~--g~~l~s~~~d~~i~  134 (359)
                      .+..|..+|... ++++|+..  ..+.+||+.+.+.+..-+.-.         -.++++.|-+.  ...|++++.-+.|+
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            577777777544 56668877  789999999875554433211         13567888776  77899999999999


Q ss_pred             EEEcCCCe-eeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          135 IWDLRKYE-VLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       135 vwd~~~~~-~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                      +||.+.+. ++..|   ..+++++...|+|  ++++..-+.+..||++........+.+..+    .|.++..+|.+.+|
T Consensus       230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG----sirsih~hp~~~~l  305 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG----SIRSIHCHPTHPVL  305 (412)
T ss_pred             EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC----CcceEEEcCCCceE
Confidence            99999764 66666   5678999999999  777778899999997666433334566544    79999999999999


Q ss_pred             EEEeCCCeEEEEEcCC
Q 040274          209 GIGHSMGWSGILVPRS  224 (359)
Q Consensus       209 ~~g~~dg~~~i~~~gs  224 (359)
                      ++++-|.+++|+..-+
T Consensus       306 as~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  306 ASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EeeccceeEEEeeccc
Confidence            9999999998887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.5e-10  Score=110.12  Aligned_cols=155  Identities=10%  Similarity=0.076  Sum_probs=107.1

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVS-LGHSGGT--VTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~-tg~~dg~--v~lwd~~~~~~~~  103 (359)
                      .+..|||||+.|++.+.                         .+.+.+|+|||..|+ +.+.+|.  |++||+.++.. .
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-T  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-E
Confidence            78899999999987642                         456788999998765 4555554  77889887754 4


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-C--CeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcC---CcEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-E--CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTG---SFAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d--~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d---~~i~v~  173 (359)
                      .+..+.+...+.+|+|||+.|+.++. +  ..|++||+..+......  .+.+..+.|||+|  ++..+.+   ..|.+|
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            45566667788999999998887664 3  36889998766543322  3456778999999  4444432   367888


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      |+... . ...+ ...    ..+.++.|+|||+.|+..+.+
T Consensus       364 d~~~~-~-~~~l-t~~----~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        364 KPDGS-G-ERIL-TSG----FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             ECCCC-c-eEec-cCC----CCCCCCeECCCCCEEEEEEcc
Confidence            85332 2 2222 111    146788999999998776653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.2e-10  Score=110.53  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=105.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVS-LGHSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~-tg~~dg--~v~lwd~~~~~~~~  103 (359)
                      .+..|+|||++|++.+.                         ...++.|+|+|..|+ +.+.+|  .|++||+.++.. .
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~  285 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T  285 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E
Confidence            77899999999997653                         234789999998765 445555  599999988764 4


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-CC--eEEEEEcCCCeeeE-eec-CCceeEEEcCCC--cEEEEcC---CcEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-EC--KIKIWDLRKYEVLQ-TLT-GHAKTLDFSQKG--LLAVGTG---SFAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d~--~i~vwd~~~~~~~~-~~~-~~v~~~~~s~~g--l~~~~~d---~~i~v~  173 (359)
                      .+..+......++|+|||+.|+.++. ++  .|+++|+.+++... ++. .....++|||+|  ++..+.+   ..|.+|
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            45556666678999999998877664 44  47777877765432 222 234578999999  4333333   268999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      |+..+ ... .+ .+.    .....+.|+|||++|+..+.+
T Consensus       366 d~~~g-~~~-~L-t~~----~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        366 DLSTG-SVR-TL-TPG----SLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             ECCCC-CeE-EC-CCC----CCCCCceECCCCCEEEEEEec
Confidence            96544 222 22 221    134567999999988876654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=4.4e-11  Score=105.16  Aligned_cols=151  Identities=11%  Similarity=0.179  Sum_probs=120.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT------TSALLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~------~~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~  141 (359)
                      -|+++.|+.++.+|++|+.|..+++|++.      +.+++.... .|.+.|.|++|+.....+++|+.+++|.+.|+.+.
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~  137 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK  137 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc
Confidence            58999999999999999999999999975      446666654 45689999999999999999999999999999999


Q ss_pred             eeeEee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeC
Q 040274          142 EVLQTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHS  213 (359)
Q Consensus       142 ~~~~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~  213 (359)
                      +.+..+     .+.|+.+..+|..  +++++.++.|.+||.+.......++..-.  .+....++-|+|.. .+|++.+.
T Consensus       138 qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  138 QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecCCCceeEEeccc
Confidence            888877     3578999999976  77788889999999776644444332221  33457889999976 56677777


Q ss_pred             CCeEEEEE
Q 040274          214 MGWSGILV  221 (359)
Q Consensus       214 dg~~~i~~  221 (359)
                      .+-+.+|.
T Consensus       216 ~~G~~~~D  223 (609)
T KOG4227|consen  216 TGGPNVFD  223 (609)
T ss_pred             cCCCCcee
Confidence            77665553

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.30  E-value=4.6e-10  Score=96.42  Aligned_cols=99  Identities=21%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             CEEEE-EeCCCeEEEEeCCCCcc--eEEeecCCCCeEEEEEecCCCEEEEecCCCe-EEEEEcCCCeeeEee-----cCC
Q 040274           80 GVVSL-GHSGGTVTMWKPTTSAL--LIKMLYHQGPVSALAFHPNGHLMATTGKECK-IKIWDLRKYEVLQTL-----TGH  150 (359)
Q Consensus        80 ~~l~t-g~~dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~-i~vwd~~~~~~~~~~-----~~~  150 (359)
                      .+|+. |..-|.|+|-|+.....  ...+.+|.+.|.|++.+-+|.++||+|..|+ |+|||..+|..+.++     ...
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            34444 44669999999886554  4677899999999999999999999999998 899999999999999     245


Q ss_pred             ceeEEEcCCC-cEEEEcC-CcEEEEcCCCC
Q 040274          151 AKTLDFSQKG-LLAVGTG-SFAQILGDFSG  178 (359)
Q Consensus       151 v~~~~~s~~g-l~~~~~d-~~i~v~d~~~~  178 (359)
                      +.+++|||++ ++++++| |+|+||.+...
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            8999999999 6666665 89999987553

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=4.4e-11  Score=116.74  Aligned_cols=154  Identities=16%  Similarity=0.228  Sum_probs=113.6

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---cceEEeecCCCC--eEEEEEecCCCE-EEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS---ALLIKMLYHQGP--VSALAFHPNGHL-MATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~---~~~~~~~~h~~~--v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~  141 (359)
                      .|++|.-+- .|++|++|..||+|++||.+..   ..+..+..|+..  |..+.+.+.|-- |++|+.||.|++||+|..
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            456665544 4689999999999999998754   346667788887  999999997765 999999999999999984


Q ss_pred             eeeE--ee-c----C-CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcc-ccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          142 EVLQ--TL-T----G-HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHN-YSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       142 ~~~~--~~-~----~-~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ....  ++ .    | ..+++..+++. ++++|..+.|.||++....-. ...+....+.....+.|++|+|.--.|++|
T Consensus      1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            2111  11 1    3 48999999988 777777799999995432111 111111111123468999999999999999


Q ss_pred             eCCCeEEEEEc
Q 040274          212 HSMGWSGILVP  222 (359)
Q Consensus       212 ~~dg~~~i~~~  222 (359)
                      +.|.++.||-.
T Consensus      1370 ~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1370 SADSTVSIYSC 1380 (1387)
T ss_pred             cCCceEEEeec
Confidence            99999988865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.28  E-value=1.1e-10  Score=115.56  Aligned_cols=179  Identities=13%  Similarity=0.054  Sum_probs=126.4

Q ss_pred             eEEEECCCCCEEEEecc---ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEecC
Q 040274           52 ILWILPSSGRYMAVAGR---RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHPN  120 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p~  120 (359)
                      ....|.|.|..+|.-..   .+..++.++. +.+|++||.||+|++|+...-       ....++....+.+.++.+.+.
T Consensus      1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            44456777877775433   6778888774 599999999999999997631       233344445778999999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCC-------------------eeeE---------e----e---------------------
Q 040274          121 GHLMATTGKECKIKIWDLRKY-------------------EVLQ---------T----L---------------------  147 (359)
Q Consensus       121 g~~l~s~~~d~~i~vwd~~~~-------------------~~~~---------~----~---------------------  147 (359)
                      +..+|+++.||.|.+.++...                   ..+.         +    +                     
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            999999999999999876430                   0000         0    0                     


Q ss_pred             -----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC---CEEEEEeC--CC
Q 040274          148 -----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE---DVLGIGHS--MG  215 (359)
Q Consensus       148 -----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~g~~--dg  215 (359)
                           .|.|++++.+|.+  ++.|+..|.+.+||++..-....-...    +..++..+..+|..   .+.++++.  .+
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----ARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----ccCCcceEEeeccCCCCceEEEecccCCC
Confidence                 1347889999998  777888899999998776322222122    23477777777743   45555544  66


Q ss_pred             eEEEEEcCCCCCceeeecc
Q 040274          216 WSGILVPRSSEPNFDSWVA  234 (359)
Q Consensus       216 ~~~i~~~gs~~~~~~~~~~  234 (359)
                      .+++|....|.+...+|..
T Consensus      1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             ceeeeecccCcceEEEEcC
Confidence            7899988888888888876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=9.1e-11  Score=111.26  Aligned_cols=146  Identities=14%  Similarity=0.143  Sum_probs=100.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|+|||++|++++.                         .+.+..|+|||..|+.++ .+|.+.||+++........
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~  330 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL  330 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            57899999999887642                         356899999999777655 5788888876543222222


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC-CCcc
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS-GSHN  181 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~-~~~~  181 (359)
                      ..+.+  .++.|+|+|.+|++++.++ +.+||+.++...... .....++.|+|+|  +++++.++.+.+|++.. .+..
T Consensus       331 l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        331 VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            24444  4678999999998887765 566999888654322 2234678899999  66667778777776432 2344


Q ss_pred             ccccccccCCCCcceeEEEEccC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      ...+..|.+    .+..++|+|.
T Consensus       408 ~~~l~~~~g----~~~~p~wsp~  426 (429)
T PRK01742        408 KARLPGSDG----QVKFPAWSPY  426 (429)
T ss_pred             eEEccCCCC----CCCCcccCCC
Confidence            555555533    6888999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.24  E-value=1.9e-10  Score=105.04  Aligned_cols=150  Identities=16%  Similarity=0.216  Sum_probs=106.5

Q ss_pred             ECCCCCEEEEecc------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCE
Q 040274           56 LPSSGRYMAVAGR------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL  123 (359)
Q Consensus        56 ~spdg~~l~~~~~------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~  123 (359)
                      .+.||++.+..-.            .+.|-.|+|+|.-|++++.||.|.+|.- +|-...++.-...+|.|++|.|+.+.
T Consensus        81 ~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~  159 (737)
T KOG1524|consen   81 CSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS  159 (737)
T ss_pred             EcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc
Confidence            3567777665332            7899999999999999999999999984 45444445456778999999998777


Q ss_pred             EEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeE
Q 040274          124 MATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGK  198 (359)
Q Consensus       124 l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~  198 (359)
                      ++.|.. +.+.+=-+.....+..+   .|-|.+++|++..  ++++|.|-...||| ..+ ..+.....    +..+|++
T Consensus       160 vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G-~~Lf~S~~----~ey~ITS  232 (737)
T KOG1524|consen  160 IVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQG-ANLFTSAA----EEYAITS  232 (737)
T ss_pred             eEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccC-cccccCCh----hccceee
Confidence            665533 44555555544444444   4558999999987  78888999999999 343 22222222    4458999


Q ss_pred             EEEccCCCEEEEEeCC
Q 040274          199 VSFRPYEDVLGIGHSM  214 (359)
Q Consensus       199 ~~~sp~~~~l~~g~~d  214 (359)
                      ++|.|+ ..++.|+.+
T Consensus       233 va~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSYN  247 (737)
T ss_pred             eeeccc-cceeeeeee
Confidence            999999 445555543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=9.4e-10  Score=105.86  Aligned_cols=154  Identities=17%  Similarity=0.231  Sum_probs=116.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC----CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT----SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~----~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--  142 (359)
                      .++|.++||.+.++++|..||.|.+|.--.    ......+..|...|++++|+++|.+|++||..|.+.+|.+.+++  
T Consensus       207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq  286 (792)
T KOG1963|consen  207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ  286 (792)
T ss_pred             cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence            679999999999999999999999996322    12345677899999999999999999999999999999999876  


Q ss_pred             eeEeecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccc--------cCCCCcceeEEEEccCCCEEEEEe
Q 040274          143 VLQTLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGN--------SMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       143 ~~~~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      .+-.+.++|..+.+|||+  +..+..|+.|.+....+. .....+.+.        .+ ...-.+.++++|.-+.++..+
T Consensus       287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k~~-~~~l~t~~~idpr~~~~vln~  364 (792)
T KOG1963|consen  287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTKTR-PQSLTTGVSIDPRTNSLVLNG  364 (792)
T ss_pred             cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCcccccc-ccccceeEEEcCCCCceeecC
Confidence            233446789999999999  555667999998875332 111111111        11 223467788999777788888


Q ss_pred             CCCeEEEEEcCC
Q 040274          213 SMGWSGILVPRS  224 (359)
Q Consensus       213 ~dg~~~i~~~gs  224 (359)
                      ..|.+.+|..-+
T Consensus       365 ~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  365 HPGHVQFYDLYT  376 (792)
T ss_pred             CCceEEEEeccc
Confidence            888888876544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.23  E-value=8.4e-10  Score=104.49  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=106.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEE-EeCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSL-GHSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~t-g~~dg--~v~lwd~~~~~~~~  103 (359)
                      ++..|+|||++|+++..                         .+.+++|+|+++.|+. .+.++  .|++||+.++.. .
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~  271 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-T  271 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-E
Confidence            67789999999987642                         3567899999987764 44444  588899887653 3


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCC-C--eEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCC---cEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKE-C--KIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGS---FAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d-~--~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~---~i~v~  173 (359)
                      .+..+........|+|+|..|+.++.. +  .|++||+.++......  ...+..+.|+|+|  ++.++.++   .|.+|
T Consensus       272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            444555556678999999988766543 2  6888898876543222  3346788999999  45555444   78888


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |+....  ...+....     ......|+|+|.+|+.++.++
T Consensus       352 d~~~~~--~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       352 DLDGGG--ERVLTDTG-----LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eCCCCC--eEEccCCC-----CCCCceECCCCCEEEEEEeCC
Confidence            865432  22222221     245568999999988877755

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.5e-10  Score=104.53  Aligned_cols=175  Identities=18%  Similarity=0.177  Sum_probs=125.8

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCC-------
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTT-------   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~-------   98 (359)
                      .+|.|+.||.+|++|++                        .|.|+.|-|  .+.++++|..|..|+++|+..       
T Consensus        54 N~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d  133 (758)
T KOG1310|consen   54 NCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD  133 (758)
T ss_pred             cceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc
Confidence            99999999999999998                        799999999  456899999999999999984       


Q ss_pred             ---CcceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCee-------eEee----c--CCceeEEEcCCC-
Q 040274           99 ---SALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEV-------LQTL----T--GHAKTLDFSQKG-  160 (359)
Q Consensus        99 ---~~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~-------~~~~----~--~~v~~~~~s~~g-  160 (359)
                         ......+.+|...|-.++..|++ +.|.+++.||+|+-||++....       ...+    .  -...|+.++|.. 
T Consensus       134 ~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp  213 (758)
T KOG1310|consen  134 HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP  213 (758)
T ss_pred             cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence               23455677899999999999988 7899999999999999986321       1111    1  124789999987 


Q ss_pred             --cEEEEcCCcEEEEcCCCCCc-----------------cccc-cccccC-CCC------cceeEEEEccCCCEEEEEeC
Q 040274          161 --LLAVGTGSFAQILGDFSGSH-----------------NYSR-YMGNSM-VKG------YQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       161 --l~~~~~d~~i~v~d~~~~~~-----------------~~~~-~~~~~~-~~~------~~v~~~~~sp~~~~l~~g~~  213 (359)
                        ++.|+.|...++||.+...+                 .+.. .++|.. ..+      ..++-+.|+|+|.-|++.-.
T Consensus       214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~  293 (758)
T KOG1310|consen  214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG  293 (758)
T ss_pred             ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC
Confidence              66677888999999322100                 0000 111210 000      12566789999988877776


Q ss_pred             CCeEEEEEcCCCC
Q 040274          214 MGWSGILVPRSSE  226 (359)
Q Consensus       214 dg~~~i~~~gs~~  226 (359)
                      .-.+.++...-+.
T Consensus       294 gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  294 GEHVYLFDVNEDK  306 (758)
T ss_pred             CeEEEEEeecCCC
Confidence            6666666544443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.22  E-value=2.6e-09  Score=99.17  Aligned_cols=170  Identities=27%  Similarity=0.421  Sum_probs=128.8

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEE-cCCCC-EEEEEeC-CCeEEEEeCCC-Ccce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRV-NPFNG-VVSLGHS-GGTVTMWKPTT-SALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~-sp~~~-~l~tg~~-dg~v~lwd~~~-~~~~  102 (359)
                      .++.+.+++..++.++.                         .+..+.+ ++++. +++..+. |+.+.+|++.. ....
T Consensus        69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  148 (466)
T COG2319          69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI  148 (466)
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence            66666677776666552                         2555666 77776 4555444 99999999998 6778


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEE-EcCCcEEEEcC
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAV-GTGSFAQILGD  175 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~-~~d~~i~v~d~  175 (359)
                      ..+..|...|.+++|+|++.++++++. |+.+++|++..+..+..+.   ..+.+++|+|++  ++++ +.|+.|.+||.
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~  228 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL  228 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence            888899999999999999998888886 9999999999877777774   468999999998  4444 78899999986


Q ss_pred             CCCCcccc-ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          176 FSGSHNYS-RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       176 ~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      ... .... .+..|..    .+ ...|+|++.++++++.++.+.+|.......
T Consensus       229 ~~~-~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         229 STG-KLLRSTLSGHSD----SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCC-cEEeeecCCCCc----ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            522 3333 4555532    32 228999998999999999999987765544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.7e-09  Score=102.56  Aligned_cols=141  Identities=18%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEE--EcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIW--DLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vw--d~~~~~  142 (359)
                      .+.+.+|+|||+.|+.++.+   ..|.+||+.+++... +....+.+.++.|+|||+.|+ +.+.++...||  |+..+.
T Consensus       197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  275 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG  275 (427)
T ss_pred             CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            78899999999998887643   369999999886543 333445667899999999876 46677765555  454443


Q ss_pred             eeEee---cCCceeEEEcCCC--cEEEEc-CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          143 VLQTL---TGHAKTLDFSQKG--LLAVGT-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       143 ~~~~~---~~~v~~~~~s~~g--l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                       +..+   .+...++.|+|||  ++.++. ++...||.+.........+...    +.......|+|||++|+..+.++
T Consensus       276 -~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~----g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        276 -LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT----GSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             -cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC----CCCcCceEECCCCCEEEEEEccC
Confidence             3333   2345778999999  444443 4556666532221122222111    11345678999999998777554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.19  E-value=9.1e-10  Score=95.08  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=119.9

Q ss_pred             eEEEECCCCCEEEEecc-------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-----------------
Q 040274           52 ILWILPSSGRYMAVAGR-------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL-----------------  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~-----------------  101 (359)
                      ..+.|+|||..|+.-..             .+-.+.|+|.+++|+.|+.|+.+++.+--+.++                 
T Consensus       182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~  261 (447)
T KOG4497|consen  182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL  261 (447)
T ss_pred             cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence            88999999999987544             788999999999999999999887754211100                 


Q ss_pred             -------------------------------------------eEEee------cCCCCeEEEEEecCCCEEEEecCC--
Q 040274          102 -------------------------------------------LIKML------YHQGPVSALAFHPNGHLMATTGKE--  130 (359)
Q Consensus       102 -------------------------------------------~~~~~------~h~~~v~~l~~~p~g~~l~s~~~d--  130 (359)
                                                                 +..++      ...-.+.-++|++|..+++|-...  
T Consensus       262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~P  341 (447)
T KOG4497|consen  262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYP  341 (447)
T ss_pred             hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCC
Confidence                                                       00000      011235668999999998886543  


Q ss_pred             CeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          131 CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      +.+.+||++..+....+  ..+|....|+|..  ++.+.....+++|..........+.      .|..|..+.|.-+|.
T Consensus       342 nalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~------~GF~i~~l~W~~~g~  415 (447)
T KOG4497|consen  342 NALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KGFNIQKLQWLQPGE  415 (447)
T ss_pred             ceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC------CCceeeeEEecCCCc
Confidence            67999999987654444  6789999999988  7777777789999743321111122      334799999999999


Q ss_pred             EEEEEeCCCeEEEEEcC
Q 040274          207 VLGIGHSMGWSGILVPR  223 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~g  223 (359)
                      +++..+.|.+..-++..
T Consensus       416 ~i~l~~kDafc~a~ve~  432 (447)
T KOG4497|consen  416 FIVLCGKDAFCVAIVED  432 (447)
T ss_pred             EEEEEcCCceEEEEecC
Confidence            99999999876665543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=2.3e-09  Score=101.59  Aligned_cols=139  Identities=13%  Similarity=0.044  Sum_probs=92.9

Q ss_pred             ceeEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cCCC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHS---GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKEC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~---dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d~--~i~vwd~~~~~  142 (359)
                      .+.+.+|||||+.|+..+.   +..|.+|++.+++... +....+.+.++.|+|||+.|+.. +.++  .|++||+.++.
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            6889999999998887652   3579999998876432 22233445678999999988765 4444  59999998876


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CCc--EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GSF--AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .....  ...+..+.|+|||  ++.++. ++.  |+++|+..+  ....+...    +..+.+..|+|||++|+..+.+
T Consensus       279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~----~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWE----GSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecC----CCCccCEEECCCCCEEEEEEcc
Confidence            54433  3356889999999  444443 344  444454332  22222222    1245678999999999876654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.16  E-value=6.2e-11  Score=106.36  Aligned_cols=143  Identities=12%  Similarity=0.139  Sum_probs=117.4

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---c
Q 040274           72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---T  148 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~  148 (359)
                      .|.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|...+.+++..+   .
T Consensus       214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~  293 (545)
T KOG1272|consen  214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR  293 (545)
T ss_pred             hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence            3678888888999999999999999999999999888899999999998889999999999999999988876655   7


Q ss_pred             CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          149 GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ++|.+|++.++|  ++++|.|+.|.|||++... .+.++... .    +...++||..|  ++..+....+.||-.
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~tp-~----~a~~ls~Sqkg--lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRTP-H----PASNLSLSQKG--LLALSYGDHVQIWKD  361 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeecccc-ccceeecC-C----Ccccccccccc--ceeeecCCeeeeehh
Confidence            889999999999  8888999999999987765 33333332 1    56778887665  445555667788753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=5.3e-09  Score=99.44  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=103.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEE-EeCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSL-GHSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~t-g~~dg--~v~lwd~~~~~~~~  103 (359)
                      .+..|||||++|++.+.                         .+.+..|+|+|..|+. .+.+|  .|++||+.++.. .
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-S  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-E
Confidence            67799999999987543                         3446899999988764 44455  688889988764 3


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-C--CeEEEEEcCCCeeeEe-ecC-CceeEEEcCCC--cEEEEc-CC--cEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-E--CKIKIWDLRKYEVLQT-LTG-HAKTLDFSQKG--LLAVGT-GS--FAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d--~~i~vwd~~~~~~~~~-~~~-~v~~~~~s~~g--l~~~~~-d~--~i~v~  173 (359)
                      .+..+........|+|||..|+..+. +  ..|++||+.+++.... +.+ ......|+|+|  ++..+. ++  .|.+|
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            45556666778899999998766553 3  3688888887764332 222 24567899999  433333 23  57888


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      |+..+. . ..+ ....    ......|+|+|++|+..+.+
T Consensus       361 dl~tg~-~-~~l-t~~~----~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        361 DLQRGS-V-RIL-TDTS----LDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ECCCCC-E-EEc-cCCC----CCCCceECCCCCEEEEEEec
Confidence            865542 2 222 1111    23356899999998877654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=7.9e-10  Score=91.74  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=107.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTT----------SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~----------~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~  139 (359)
                      |.+-+|+|.+++|++|+.+|.|-+..+.+          ..++..+.+|.++|+.++|+.  .+|++|+ ||.|+-|.-+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeeh
Confidence            45567888888999999999999988753          234566789999999999983  3566665 4999998754


Q ss_pred             CCe------eeEee--c--------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEE
Q 040274          140 KYE------VLQTL--T--------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       140 ~~~------~~~~~--~--------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  201 (359)
                      ...      .+...  +        ..|+++...|..  ++.++.|+.++.||+.++ .....|.+|..    -|.++.-
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtD----YvH~vv~  164 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTD----YVHSVVG  164 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcc----eeeeeee
Confidence            321      11111  1        136888888765  777779999999997655 78888888865    6888887


Q ss_pred             ccCCCEEEEEeCCCeEEEEE
Q 040274          202 RPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i~~  221 (359)
                      -.....+++|+.||.+++|.
T Consensus       165 R~~~~qilsG~EDGtvRvWd  184 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWD  184 (325)
T ss_pred             cccCcceeecCCCccEEEEe
Confidence            66667799999999999854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.3e-10  Score=98.89  Aligned_cols=124  Identities=19%  Similarity=0.288  Sum_probs=102.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--  106 (359)
                      -+++|+.||..|++|+.                       .|.+|.|+|||.+|++-+.| ..+||+.+++.++....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            89999999999999976                       89999999999999999999 99999998772111100  


Q ss_pred             ---------------------------------------cC-------------CCCeEEEEEecCCCEEEEecCCCeEE
Q 040274          107 ---------------------------------------YH-------------QGPVSALAFHPNGHLMATTGKECKIK  134 (359)
Q Consensus       107 ---------------------------------------~h-------------~~~v~~l~~~p~g~~l~s~~~d~~i~  134 (359)
                                                             .+             ...|++++++++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                   01             12688999999999999999999999


Q ss_pred             EEEcCCCeeeEee----cCCceeEEEcCCC--cEEEEcCCcEEEEcCC
Q 040274          135 IWDLRKYEVLQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILGDF  176 (359)
Q Consensus       135 vwd~~~~~~~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~  176 (359)
                      |++..+.+.++-.    .+.|+.+.|+|+.  +.+.+.+....|..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999988877766    2458999999998  7777888877777643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.1e-09  Score=102.14  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKEC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~--~i~vwd~~~~~  142 (359)
                      .+.+.+|+|+|+.|++++.+   ..|++||+.++.... +..+.+...++.|+|||+.|+ +.+.++  .|++||+.++.
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            68899999999998887743   469999998876533 334455566889999999775 445554  59999998876


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CCc--EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GSF--AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .....  .+....++|+|||  ++.++. ++.  |+++|+..+ . ...+...    +....+++|+|+|++|+..+.+
T Consensus       284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~----g~~~~~~~~SpDG~~Ia~~~~~  356 (433)
T PRK04922        284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S-AERLTFQ----GNYNARASVSPDGKKIAMVHGS  356 (433)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEEeecC----CCCccCEEECCCCCEEEEEECC
Confidence            53322  2334678999999  444443 344  666665433 2 2222211    1134578999999999876643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=4.7e-10  Score=103.25  Aligned_cols=154  Identities=15%  Similarity=0.139  Sum_probs=113.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      ....|+++.-+.-|++++....|+-+++..|..+..|....+.++++..++...+|++|+.+|.|-.||.++...+.++ 
T Consensus       135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence            4566777665555666666678999999999999999888899999999999999999999999999999986554444 


Q ss_pred             --------cC-----CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE-EEEE
Q 040274          148 --------TG-----HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV-LGIG  211 (359)
Q Consensus       148 --------~~-----~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~g  211 (359)
                              ++     .|+++.|+.+|  +.+|+..|.|.|||++........-..    ...+|..+.|.+.+.. -++.
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~----~e~pi~~l~~~~~~~q~~v~S  290 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG----YELPIKKLDWQDTDQQNKVVS  290 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC----CccceeeecccccCCCceEEe
Confidence                    11     28999999999  677778899999998776443333233    3348999999876322 2223


Q ss_pred             eCCCeEEEEEcCCCC
Q 040274          212 HSMGWSGILVPRSSE  226 (359)
Q Consensus       212 ~~dg~~~i~~~gs~~  226 (359)
                      ....++.||...+|.
T Consensus       291 ~Dk~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  291 MDKRILKIWDECTGK  305 (703)
T ss_pred             cchHHhhhcccccCC
Confidence            334455666554443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.8e-09  Score=101.43  Aligned_cols=139  Identities=13%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             ceeEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCe--EEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHS---GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECK--IKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~---dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~--i~vwd~~~~~  142 (359)
                      .+.+.+|+|||+.|+..+.   +..|.+||+.++... .+..+.+.+.+.+|+|||..|+ +.+.++.  |++||+.++.
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence            7899999999998888764   468999999887653 4445667788999999998765 4555554  8888998776


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-C--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-G--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .....  .+.....+|+|||  ++.++. +  ..|++||+... .. ..+....    ..+....|+|+|++|+..+.+
T Consensus       282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~-~~lt~~~----~~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NP-RRISFGG----GRYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-Ce-EEeecCC----CcccCeEECCCCCEEEEEEcC
Confidence            53322  3345779999999  444442 2  36788885432 22 2222221    146678999999999887653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=9.5e-10  Score=107.70  Aligned_cols=154  Identities=11%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCe---eeE
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYE---VLQ  145 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~---~~~  145 (359)
                      .-++|.....+|++++.-..|+|||......+..+. +...-|++++-+- .|+.++.|..||.|++||.|...   .+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            445677766667776667899999999877766655 3445677776543 57899999999999999998643   344


Q ss_pred             ee---cC--CceeEEEcCCC---cEEEEcCCcEEEEcCCCC-CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          146 TL---TG--HAKTLDFSQKG---LLAVGTGSFAQILGDFSG-SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       146 ~~---~~--~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      .+   ..  +|..+.+.+.|   +++++.+|.|++||++.. ......+..|.. .|+..+++..+++..++|+|+. +.
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~-yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE-YGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc-cCccceeeeeccCCCeeeecCc-ce
Confidence            44   22  38888888877   999999999999998764 222222333321 3446999999999999999999 88


Q ss_pred             EEEEEcCCCC
Q 040274          217 SGILVPRSSE  226 (359)
Q Consensus       217 ~~i~~~gs~~  226 (359)
                      +.||......
T Consensus      1327 ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1327 IKIYSLSGEQ 1336 (1387)
T ss_pred             EEEEecChhh
Confidence            8888765543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=1.4e-09  Score=104.72  Aligned_cols=182  Identities=14%  Similarity=0.183  Sum_probs=128.9

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      .+.++||+++++++|..                           .|++++|+++|.+|++|+..|.+-+|.+.|++ ..-
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf  287 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF  287 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccc
Confidence            68899999999998765                           89999999999999999999999999999987 333


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--------------cCCceeEEEcC-CC-cEEEEcCC
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--------------TGHAKTLDFSQ-KG-LLAVGTGS  168 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--------------~~~v~~~~~s~-~g-l~~~~~d~  168 (359)
                      +.--.++|..+.++||+.+.+....|+.|.+-.+.+.....++              .+-.+.++++| .+ ++..+..+
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence            4455789999999999999999999999999877654433333              12247788999 44 78888899


Q ss_pred             cEEEEcCCCCCccccccc----cccC--CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeeccCC
Q 040274          169 FAQILGDFSGSHNYSRYM----GNSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANP  236 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~----~~~~--~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~~~~  236 (359)
                      +|++||+.+.........    .+.+  .....++.+..+-.|.+++++-..  +.......++..++.|..++
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~--~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR--IDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee--ehhhhccCceEEEEEEEEcC
Confidence            999999766533321110    0100  011247777888889998876432  11122222344455555444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=1.2e-09  Score=106.79  Aligned_cols=143  Identities=18%  Similarity=0.278  Sum_probs=118.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE-ee---c
Q 040274           73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-TL---T  148 (359)
Q Consensus        73 l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~-~~---~  148 (359)
                      +.++++.-++++|+.-+.|.+|++.-......+.+|.+.+.++.|+-||++++++|.|.++++|++.+.+.+. +.   .
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            3446667789999999999999988444344578999999999999999999999999999999999877654 22   4


Q ss_pred             CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          149 GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       149 ~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ..++.++|.|+-+++++.|.++++|+. +. .....|..|   .+..|..++..++..++++++.||.+.+|
T Consensus       219 aRvw~~~~~~n~i~t~gedctcrvW~~-~~-~~l~~y~~h---~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  219 ARVWACCFLPNRIITVGEDCTCRVWGV-NG-TQLEVYDEH---SGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             ceeEEEEeccceeEEeccceEEEEEec-cc-ceehhhhhh---hhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            568999999998999999999999963 33 456688888   34579999999999999999999987764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=1.3e-09  Score=96.03  Aligned_cols=130  Identities=15%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTS-ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .++++.|-+.  +..|++++.-+.|++||+..+ .|+..|.-...+++++...|+|+++++|...+.+..||++.+..+.
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence            6788999886  789999999999999999866 6788888788999999999999999999999999999999988755


Q ss_pred             e-e---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC
Q 040274          146 T-L---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       146 ~-~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      . +   .|.++++..+|.+  ++++|-|+.|+|||+.+..-....|...      .++++.+.++
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs------~lt~il~~~~  342 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS------RLTFILLRDD  342 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc------cccEEEecCC
Confidence            5 3   6789999999998  7788899999999976643344444433      5777777665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=1.5e-09  Score=92.41  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=122.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPT-TSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~-~~~~~~~  104 (359)
                      .++.|++.|..++++-.                         .++-..|+. +.+++++|+.||.+.-||++ .++.+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            67788877777665433                         667777877 55789999999999999999 3344444


Q ss_pred             -eecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcC-CCeeeEee--cCCceeEEEcCCC---cEEEEcCCcEEEEcCC
Q 040274          105 -MLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLR-KYEVLQTL--TGHAKTLDFSQKG---LLAVGTGSFAQILGDF  176 (359)
Q Consensus       105 -~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~-~~~~~~~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~  176 (359)
                       ..-|...|.++.-+| .+.+++||+.|-.|++||.| .++++..-  .|.|+.+.++|.-   +++++.-+...|.++.
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence             457889999998877 68899999999999999999 47777655  6789999999975   5666655555666543


Q ss_pred             CCCcc-ccccccccCCCCcceeEEEEccCCCEEEEEeC-CCe-EEEEEcCCCCC
Q 040274          177 SGSHN-YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGW-SGILVPRSSEP  227 (359)
Q Consensus       177 ~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~-~~i~~~gs~~~  227 (359)
                      ..... ...+..+.. |.+.+..-.|.....+|++++. |.. ..+|..+++.+
T Consensus       285 ~~~~e~~~~~~s~~~-hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  285 DKVLEFQIVLPSDKI-HDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             ccccchheeeecccc-ccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence            33211 112233333 3345666777665567887553 444 34777776654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=6.8e-09  Score=98.18  Aligned_cols=139  Identities=12%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CC----eEEEEeCCCC---cceEEeecCCCCeEEEEEecCCCEEEEec-CCCe--EEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GG----TVTMWKPTTS---ALLIKMLYHQGPVSALAFHPNGHLMATTG-KECK--IKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg----~v~lwd~~~~---~~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~--i~vwd  137 (359)
                      .....+|||||+.|+..+. +|    .+.+|++.++   ........+.+.....+|+|||+.|+..+ .+|.  |++++
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            3456789999988877653 23    3445776653   33333323334557789999999877655 4564  55555


Q ss_pred             cCC-CeeeEee---cCCceeEEEcCCC--cEEEEcC---CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          138 LRK-YEVLQTL---TGHAKTLDFSQKG--LLAVGTG---SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       138 ~~~-~~~~~~~---~~~v~~~~~s~~g--l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                      +.. +.....+   .+.+....|||||  ++.++.+   ..|.+||+..+ .. ..+....    ..+.+..|+|||+.|
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~----~~~~~p~wSpDG~~L  385 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSP----ENKESPSWAIDSLHL  385 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCC----CCccceEECCCCCEE
Confidence            542 2222222   3456789999999  4444432   46899996554 22 2222211    146778999999988


Q ss_pred             EEEeC
Q 040274          209 GIGHS  213 (359)
Q Consensus       209 ~~g~~  213 (359)
                      +..+.
T Consensus       386 ~f~~~  390 (428)
T PRK01029        386 VYSAG  390 (428)
T ss_pred             EEEEC
Confidence            76543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=4.3e-09  Score=96.80  Aligned_cols=140  Identities=16%  Similarity=0.258  Sum_probs=101.1

Q ss_pred             eeEEEEcCCCC-EEEEEeC--C---------CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEE--ecCCCeEEE
Q 040274           70 TDLMRVNPFNG-VVSLGHS--G---------GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT--TGKECKIKI  135 (359)
Q Consensus        70 v~~l~~sp~~~-~l~tg~~--d---------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s--~~~d~~i~v  135 (359)
                      =..|.|++-|. +|+.++.  |         .+++++++....+...+ ...++|+++.|+|+|+-|+.  |-+--.+.|
T Consensus       220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            34677888554 4444332  2         35888888744544444 34899999999999987655  445678999


Q ss_pred             EEcCCCeeeEee-cCCceeEEEcCCC--cEEEEcC---CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE
Q 040274          136 WDLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTG---SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       136 wd~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      ||++ +.++..+ .++-+++-|+|.|  ++.+|.+   |.+.|||+.+ .+.+..+...      ..+-+.|+|||.+++
T Consensus       299 fnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~------~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  299 FNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA------NTTVFEWSPDGEYFL  370 (566)
T ss_pred             EcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC------CceEEEEcCCCcEEE
Confidence            9988 6788888 6788999999999  5666655   7999999766 3455444433      356689999999999


Q ss_pred             EEeCCCeEE
Q 040274          210 IGHSMGWSG  218 (359)
Q Consensus       210 ~g~~dg~~~  218 (359)
                      +++..-..+
T Consensus       371 TATTaPRlr  379 (566)
T KOG2315|consen  371 TATTAPRLR  379 (566)
T ss_pred             EEeccccEE
Confidence            988764433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=6.7e-09  Score=98.90  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEE-EeCCCe--EEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSL-GHSGGT--VTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~t-g~~dg~--v~lwd~~~~~~~~  103 (359)
                      .+..|||||++|+..+.                         ......|+|||+.|+. .+.+|.  |++||+.+++. .
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~  299 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T  299 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E
Confidence            57899999999987542                         2356899999997765 455664  77888887754 4


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-C--CeEEEEEcCCCeeeEe-ecC-CceeEEEcCCC--cEEEEc-CC--cEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-E--CKIKIWDLRKYEVLQT-LTG-HAKTLDFSQKG--LLAVGT-GS--FAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d--~~i~vwd~~~~~~~~~-~~~-~v~~~~~s~~g--l~~~~~-d~--~i~v~  173 (359)
                      .+..+.......+|+|||+.|+..+. +  ..|+++|+.+++.... +.+ .....+|+|+|  ++..+. ++  .|.++
T Consensus       300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            44455566788999999998776553 3  3577788877764332 222 24567999999  434333 34  45566


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |+..+ .. ..+....     ......|+|+|+.|+..+.++
T Consensus       380 dl~~g-~~-~~lt~~~-----~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        380 DLETG-AM-QVLTSTR-----LDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             ECCCC-Ce-EEccCCC-----CCCCceECCCCCEEEEEEecC
Confidence            75443 22 2222111     223458999999887766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.07  E-value=6.1e-08  Score=89.31  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=109.2

Q ss_pred             eEEEECCCCCEEEEecc--------------------------------------ceeEEEEcCCCCEEEEEeC-CCeEE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------------------RTDLMRVNPFNGVVSLGHS-GGTVT   92 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------------------~v~~l~~sp~~~~l~tg~~-dg~v~   92 (359)
                      ..++++|+|++|+++..                                      ..+++.|+|+++++++... ...|.
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence            56888999999988754                                      3568999999998877653 45799


Q ss_pred             EEeCCCCcc-e---EEee-cCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcC--CCe--eeEee---c----C--Ccee
Q 040274           93 MWKPTTSAL-L---IKML-YHQGPVSALAFHPNGHLMATTG-KECKIKIWDLR--KYE--VLQTL---T----G--HAKT  153 (359)
Q Consensus        93 lwd~~~~~~-~---~~~~-~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~--~~~--~~~~~---~----~--~v~~  153 (359)
                      +|++..... +   ..+. .....-..+.|+|++++++..+ .++.|.+|++.  .+.  .+..+   +    +  ....
T Consensus       170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            999876541 2   2222 2334568899999999876654 57889999988  443  23333   1    1  3578


Q ss_pred             EEEcCCC-cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 040274          154 LDFSQKG-LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSGILVPR  223 (359)
Q Consensus       154 ~~~s~~g-l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~~g  223 (359)
                      |.++||| ++.++  ..+.|.+|++......+........ .+.....+.++|+|++|+++.. ++.+.+|.-.
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            9999999 33333  4578999997332122222221111 2335789999999999988875 4566666443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.1e-08  Score=94.06  Aligned_cols=56  Identities=11%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------ceeEEEEcCCCCEEEEEeC----------C-CeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR--------------------RTDLMRVNPFNGVVSLGHS----------G-GTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------~v~~l~~sp~~~~l~tg~~----------d-g~v~lwd~~~~~  100 (359)
                      .-+.|||-|.||++-..                    .|.-+.|||..+||+|-+.          + ..++|||+.+|.
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            77899999999998654                    7999999999999999652          1 479999999997


Q ss_pred             ceEEeec
Q 040274          101 LLIKMLY  107 (359)
Q Consensus       101 ~~~~~~~  107 (359)
                      ....|..
T Consensus       294 lkrsF~~  300 (698)
T KOG2314|consen  294 LKRSFPV  300 (698)
T ss_pred             hhcceec
Confidence            6655543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=1.2e-08  Score=96.63  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEE-ecCCC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT-TGKEC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s-~~~d~--~i~vwd~~~~~  142 (359)
                      .+.+.+|+|+|+.|+.++.+   ..|++||+.++... .+..+.+.+.+++|+|||+.|+. .+.++  .|++||+.++.
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            57888999999999887654   47999999987543 33345666778999999987764 44444  59999998765


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      .....  .+......|+|+|  ++.++. ++  .|+++|+... . ...+..+    +..+..+.|+|+|++|+.++.++
T Consensus       270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~l~~~----~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-E-VRRLTFR----GGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecC----CCCccCeEECCCCCEEEEEEccC
Confidence            43222  2334678999999  444443 23  5777775433 2 2222222    12467889999999998887764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=1.8e-09  Score=110.71  Aligned_cols=165  Identities=15%  Similarity=0.188  Sum_probs=131.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|.+|.-||...+.+||+.||+|++|....++.+..+. +....|+.+.|+.+|+.+..+..||.+.+|.+. .++....
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence            78888889999999999999999999999998888876 334889999999999999999999999999987 4444444


Q ss_pred             cC---CceeEEEcCCCcEEEE---cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE--
Q 040274          148 TG---HAKTLDFSQKGLLAVG---TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI--  219 (359)
Q Consensus       148 ~~---~v~~~~~s~~gl~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i--  219 (359)
                      ..   ..+++.|-..++++.+   .++.+.+||..-.+.....-..|    ...++++++.|....|++|+.+|.+.+  
T Consensus      2289 qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H----~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH----DGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeec----CCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            32   3567777666655554   35799999965443222222344    347999999999999999999999988  


Q ss_pred             ------------------EEcCCCCCceeeeccCCCC
Q 040274          220 ------------------LVPRSSEPNFDSWVANPFE  238 (359)
Q Consensus       220 ------------------~~~gs~~~~~~~~~~~~~~  238 (359)
                                        ++.|+.++++++|.++.+.
T Consensus      2365 ~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             hHHHHHHHHhhhhhhhheeeccCcccceEEEEccccc
Confidence                              5789999999999987664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=4.1e-08  Score=93.41  Aligned_cols=139  Identities=15%  Similarity=0.089  Sum_probs=91.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEE-ecCCC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT-TGKEC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s-~~~d~--~i~vwd~~~~~  142 (359)
                      .+....|+|+|+.|+..+.+   ..|.+||+.++.... +....+.+.++.|+|||+.|+. .+.++  .|++||+.++.
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            67889999999998876643   369999998876433 3333455667899999998764 44444  68899998876


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .....  ........|+|+|  ++..+. ++  .|+++|+..+ .. ..+...    +.......|+|+|++|+..+.+
T Consensus       279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~~-~~lt~~----~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-RA-ERVTFV----GNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-CE-EEeecC----CCCccceEECCCCCEEEEEEcc
Confidence            43322  3345678999999  444443 33  5777775443 22 111111    1124467899999999877653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.03  E-value=4e-09  Score=102.03  Aligned_cols=150  Identities=22%  Similarity=0.314  Sum_probs=116.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---------CCeEEEEEcCCCeeeEeec
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---------ECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---------d~~i~vwd~~~~~~~~~~~  148 (359)
                      ++.++.+|+..|+|.+-|+++.+.+.++.+|++.|..+..  .|++|++||.         |..|+|||+|+.+.+.-+.
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence            5789999999999999999999999999999999987655  6889999875         5668999999887766553


Q ss_pred             C--CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcc-ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          149 G--HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHN-YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ~--~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      -  ...-+.|.|.-   ++.++..|.+.+-|......+ ...++.+.  .++.+..++++++++.|+.|..+|.+.+|. 
T Consensus       264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa-  340 (1118)
T KOG1275|consen  264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA-  340 (1118)
T ss_pred             cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec-
Confidence            2  23567788875   777888899999985443333 33444442  344599999999999999999999999998 


Q ss_pred             CCCCCceeee
Q 040274          223 RSSEPNFDSW  232 (359)
Q Consensus       223 gs~~~~~~~~  232 (359)
                      ....+.+..+
T Consensus       341 ~~~~P~Fn~~  350 (1118)
T KOG1275|consen  341 DRPQPQFNEY  350 (1118)
T ss_pred             CCCCCccCCC
Confidence            3344444433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=2e-08  Score=95.62  Aligned_cols=145  Identities=17%  Similarity=0.068  Sum_probs=91.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEE-ecCCCe--EEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSG-G--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT-TGKECK--IKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d-g--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s-~~~d~~--i~vwd~~~~~  142 (359)
                      .+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+...+..|+|||+.|+. .+.++.  |++||+.+++
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            67789999999988876543 3  58899998876432 2222334557899999998765 455564  8888988776


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-C
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-M  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-d  214 (359)
                      .....  ......++|+|||  ++..+. ++  .|+++|+..+ .. ..+...    +......+|+|||++|+..+. +
T Consensus       298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~~-~~Lt~~----g~~~~~~~~SpDG~~l~~~~~~~  371 (448)
T PRK04792        298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-KV-SRLTFE----GEQNLGGSITPDGRSMIMVNRTN  371 (448)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CE-EEEecC----CCCCcCeeECCCCCEEEEEEecC
Confidence            53322  2345788999999  433332 33  4666675433 22 222111    112445789999999887665 3


Q ss_pred             CeEEEE
Q 040274          215 GWSGIL  220 (359)
Q Consensus       215 g~~~i~  220 (359)
                      +...|+
T Consensus       372 g~~~I~  377 (448)
T PRK04792        372 GKFNIA  377 (448)
T ss_pred             CceEEE
Confidence            434444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=6.7e-08  Score=90.98  Aligned_cols=155  Identities=12%  Similarity=0.016  Sum_probs=98.6

Q ss_pred             eEEEECCCCCE-EEEecc-------------------------ceeEEEEcCCCCEEEEEe-CC--CeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRY-MAVAGR-------------------------RTDLMRVNPFNGVVSLGH-SG--GTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~-l~~~~~-------------------------~v~~l~~sp~~~~l~tg~-~d--g~v~lwd~~~~~~~  102 (359)
                      ....|||||+. ++..+.                         .+.+..|+|||..|+... .+  ..|.++|+.++.. 
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-  269 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-  269 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence            67899999985 554322                         355788999998765543 33  4688889887753 


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecC-CC--eEEEEEcCCCeeeEee-cCCceeEEEcCCC--cEEEEcC---------
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGK-EC--KIKIWDLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTG---------  167 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~--~i~vwd~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d---------  167 (359)
                      ..+..+.+......|+|||+.|+..+. .+  .|+++|+.+++..... .+. ....|||+|  ++..+..         
T Consensus       270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCC
Confidence            344444444456789999987766553 23  6888899887763333 232 345899999  4444332         


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ..|.++|+..+ . ...+... .    ......|+|||+.|+..+..+
T Consensus       349 ~~I~v~d~~~g-~-~~~LT~~-~----~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        349 FNLYLISTNSD-Y-IRRLTAN-G----VNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             cEEEEEECCCC-C-eEECCCC-C----CcCCeEECCCCCEEEEEEccC
Confidence            36778885444 2 2222222 1    234689999999887766544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1e-09  Score=95.30  Aligned_cols=133  Identities=19%  Similarity=0.270  Sum_probs=102.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----cceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-----ALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-----~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .|.++.|...+++++.|+.+|.|..+|++.+     .+...+ -|.+.|+++..-. ++.+|++++.+|.|++||.|.-+
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            7899999998899999999999999999865     233333 6889999988765 78899999999999999999877


Q ss_pred             e---eEeecCCceeEEEcCC------C-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc
Q 040274          143 V---LQTLTGHAKTLDFSQK------G-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       143 ~---~~~~~~~v~~~~~s~~------g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  203 (359)
                      +   +.++.|||+..++.|-      | ++++|.|...+||.+..+ .....++.........+.+++|..
T Consensus       333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-ceeeccCCCCccccccccceehhc
Confidence            6   8899999987777652      3 888999999999996544 444444433222233466666643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.95  E-value=1.4e-08  Score=86.67  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCC-CeeeE
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--LIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRK-YEVLQ  145 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~-~~~~~  145 (359)
                      ..++.|++.+..++++..+|.+.+-+......  ++.++.|.-+++-+.|+. +.+++++||.|+.+..||+|. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            56888999998999999999999666554433  347789999999999976 557899999999999999993 44433


Q ss_pred             ee----cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC--CEEEEEeCCCe
Q 040274          146 TL----TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE--DVLGIGHSMGW  216 (359)
Q Consensus       146 ~~----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~g~~dg~  216 (359)
                      .-    ...|.+|.-+|.-   +++|++|..|++||+++-++++..-..     ++.|+.+.++|.-  .+|+++-.+|.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-----~GGVWRi~~~p~~~~~lL~~CMh~G~  278 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-----GGGVWRIKHHPEIFHRLLAACMHNGA  278 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-----ccceEEEEecchhhhHHHHHHHhcCc
Confidence            32    3457788777764   888999999999998766555443322     2369999999953  44555555654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=2.6e-08  Score=94.23  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEE--eCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMW--KPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lw--d~~   97 (359)
                      +...|||||+.|+..+.                               .....+|+|||..|+..+ .+|...+|  ++.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            67889999998875431                               224678999999877765 46655555  443


Q ss_pred             C-CcceEEeecCCCCeEEEEEecCCCEEEEecCC---CeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEc---
Q 040274           98 T-SALLIKMLYHQGPVSALAFHPNGHLMATTGKE---CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGT---  166 (359)
Q Consensus        98 ~-~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d---~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~---  166 (359)
                      . +.....+..+...+....|+|||+.|+.++.+   ..|.+||+.+++.....  ...+.++.|+|||  ++..+.   
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g  393 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSN  393 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCC
Confidence            2 23344454555677889999999988876543   46999999888654333  2356789999999  433332   


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      ...|.++|+..+ .. ..+....+    .+...+|+|..
T Consensus       394 ~~~L~~vdl~~g-~~-~~Lt~~~g----~~~~p~Ws~~~  426 (428)
T PRK01029        394 ESELYLISLITK-KT-RKIVIGSG----EKRFPSWGAFP  426 (428)
T ss_pred             CceEEEEECCCC-CE-EEeecCCC----cccCceecCCC
Confidence            246788885443 22 22222211    46678888864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.93  E-value=1.4e-09  Score=91.18  Aligned_cols=70  Identities=26%  Similarity=0.456  Sum_probs=68.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      .|..+.+-||+++++|++.|+.|+||+.++..++..+.-|.+.|++++|+|+..++|.++.|+.|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            7899999999999999999999999999999999999999999999999999999999999999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.93  E-value=1.8e-07  Score=86.50  Aligned_cols=145  Identities=10%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCeeeEeecC
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEVLQTLTG  149 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~~~~~~~  149 (359)
                      ..+.|+||++++++++.||.|.++|+.+.+.+..+.... ...++++++||+++++++ .++.+.++|..+.+++..++.
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            346789999999999999999999999999888887644 458899999999988776 689999999999999888731


Q ss_pred             ----------CceeEEEcCCC--cEEEEcC-CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCC
Q 040274          150 ----------HAKTLDFSQKG--LLAVGTG-SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMG  215 (359)
Q Consensus       150 ----------~v~~~~~s~~g--l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg  215 (359)
                                .+..+..+|..  ++..-.+ +.|.+.|.............    .+.......|+|++++++++. .+.
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~----~g~~~~D~~~dpdgry~~va~~~sn  194 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK----VGRFPHDGGFDPDGRYFLVAANGSN  194 (369)
T ss_dssp             -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGT
T ss_pred             ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec----ccccccccccCcccceeeecccccc
Confidence                      34567777777  4444444 78888785443222212211    122577899999999887753 344


Q ss_pred             eEEEE
Q 040274          216 WSGIL  220 (359)
Q Consensus       216 ~~~i~  220 (359)
                      .+.++
T Consensus       195 ~i~vi  199 (369)
T PF02239_consen  195 KIAVI  199 (369)
T ss_dssp             EEEEE
T ss_pred             eeEEE
Confidence            44443

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=7.5e-07  Score=78.47  Aligned_cols=164  Identities=14%  Similarity=0.202  Sum_probs=112.0

Q ss_pred             eEEEECCCCCEEEEecc------------------------------ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCC-C
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTT-S   99 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~-~   99 (359)
                      .-|+|+|++++|.++..                              +...+++++++.+++++.. .|.|.++-++. |
T Consensus        43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG  122 (346)
T COG2706          43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG  122 (346)
T ss_pred             ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC
Confidence            66778888877776554                              4478889999999888874 57899998865 3


Q ss_pred             cc--eEEeecCCCC----------eEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeEee------cCCceeEEEcCCC
Q 040274          100 AL--LIKMLYHQGP----------VSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG  160 (359)
Q Consensus       100 ~~--~~~~~~h~~~----------v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g  160 (359)
                      ..  ...+..|.+.          +.+..+.|++++|++++. --.|.+|++..|.....-      ......|.|+|+|
T Consensus       123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~  202 (346)
T COG2706         123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG  202 (346)
T ss_pred             ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC
Confidence            22  2223356666          899999999999988764 245999999876543222      2336889999999


Q ss_pred             ---cEEEEcCCcEEEEcCCCCCccccccccccC-----CCCcceeEEEEccCCCEEEEEeCCC
Q 040274          161 ---LLAVGTGSFAQILGDFSGSHNYSRYMGNSM-----VKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       161 ---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                         ++.+-.+++|.+|...........+..+..     ........+..+|||++|.++....
T Consensus       203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence               455556899999985443222222111100     0223577899999999998776543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=5.4e-07  Score=79.36  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=115.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------------ceeEEEEcCCCCEEEEEeC-CCeEEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------------RTDLMRVNPFNGVVSLGHS-GGTVTM   93 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------------~v~~l~~sp~~~~l~tg~~-dg~v~l   93 (359)
                      ..++++++|++|+++..                                     .+++..+.|++++|++.+- --.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            67899999999998776                                     3899999999999888763 236899


Q ss_pred             EeCCCCcce----EEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCC----eeeEee---c------CCceeEE
Q 040274           94 WKPTTSALL----IKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKY----EVLQTL---T------GHAKTLD  155 (359)
Q Consensus        94 wd~~~~~~~----~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~----~~~~~~---~------~~v~~~~  155 (359)
                      |++..+...    ..+. ....-..|.|+|++++..+.+ .+++|-+|.....    +.++++   +      .....|.
T Consensus       172 y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         172 YDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999866432    1222 233458899999999977766 5999999998763    234433   1      2357889


Q ss_pred             EcCCC-cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          156 FSQKG-LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       156 ~s~~g-l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      +++|| ++.++..  ..|.+|.+...+..+........ .+.....+.|+|+|++|++++.++
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCC
Confidence            99999 6666654  47888876554343433333222 444578899999999999988765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-08  Score=87.48  Aligned_cols=152  Identities=10%  Similarity=0.155  Sum_probs=99.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEeecCC-----CCeEEEEEecC-CCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS---ALLIKMLYHQ-----GPVSALAFHPN-GHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~---~~~~~~~~h~-----~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~  139 (359)
                      .|+++.++.|...++++ .|=.|.+|++.-.   -.+..++.+.     .-|++..|+|. .+.|+.++..|+|++-|+|
T Consensus       166 hiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  166 HINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR  244 (433)
T ss_pred             EeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence            56677777666666555 3456667765421   1133333332     35788899994 4568888899999999999


Q ss_pred             CCeeeE----ee---------------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccC--------C
Q 040274          140 KYEVLQ----TL---------------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSM--------V  191 (359)
Q Consensus       140 ~~~~~~----~~---------------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------~  191 (359)
                      ...+.-    .+               -..|+++.|+++| ++.+-.--+|.+||+.....++..+..|..        .
T Consensus       245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence            533211    11               1247899999999 555544589999998665566655554421        0


Q ss_pred             CC---cceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          192 KG---YQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       192 ~~---~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..   ..-..++|+.++.++++|+.....+++.
T Consensus       325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             hccchhheeEEEEcCCcceEecccccceEEEec
Confidence            00   0124578999999999999999888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.88  E-value=2.9e-07  Score=79.55  Aligned_cols=149  Identities=15%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcceEEeecCC--CCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT-TSALLIKMLYHQ--GPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEV-  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~-~~~~~~~~~~h~--~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~-  143 (359)
                      +|.++.+.++.  |++. ..+.|.||... ..+.+..+....  ..+.+++-+.+..+||.-| .-|.|.|-|+..... 
T Consensus        96 ~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~  172 (346)
T KOG2111|consen   96 EIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN  172 (346)
T ss_pred             ceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC
Confidence            56666666543  3333 24678888766 334444444222  2233333333444555544 468999999976443 


Q ss_pred             ----eEeecCCceeEEEcCCC--cEEEEcCCc-EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          144 ----LQTLTGHAKTLDFSQKG--LLAVGTGSF-AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       144 ----~~~~~~~v~~~~~s~~g--l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                          +....+.|.|++.+.+|  ++++|..|+ |+|||..++......-.+.   ....|+|++|||++.+|+++|+.|+
T Consensus       173 ~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  173 APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---DRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---chheEEEEEeCCCccEEEEEcCCCe
Confidence                22335679999999999  556666665 6899977764444332222   3457999999999999999999999


Q ss_pred             EEEEEcC
Q 040274          217 SGILVPR  223 (359)
Q Consensus       217 ~~i~~~g  223 (359)
                      +.|+.--
T Consensus       250 lHiF~l~  256 (346)
T KOG2111|consen  250 LHIFSLR  256 (346)
T ss_pred             EEEEEee
Confidence            9987543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.87  E-value=1.7e-08  Score=99.08  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=92.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI-KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|.++.|+-+|.++++.|.|.++++|++.+.+... ...+|+..|+.++|+|+  .++|++.|.++++|+.. +..+..+
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y  253 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY  253 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh
Confidence            78999999999999999999999999999987665 67799999999999998  99999999999999765 3444455


Q ss_pred             ----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          148 ----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       148 ----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                          ..++..++..++.  .++++.|+.+.+||...
T Consensus       254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence                3468899998887  88899999999999643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=8.5e-08  Score=88.49  Aligned_cols=128  Identities=18%  Similarity=0.406  Sum_probs=95.1

Q ss_pred             ceeEEEEcCCCCEEEE--EeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPFNGVVSL--GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~t--g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~~  143 (359)
                      +|+++.|+|++.-|++  |-.--.|.|+|++ +.++..|  ..++-+++-|+|.|++++.+|-   -|.|-|||+.+.++
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            8999999999976544  5567789999987 5555555  4778899999999999888775   48899999999888


Q ss_pred             eEeec-CCceeEEEcCCC--cEEEEc------CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          144 LQTLT-GHAKTLDFSQKG--LLAVGT------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       144 ~~~~~-~~v~~~~~s~~g--l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      +..+. ...+-+.|+|||  +++++.      |+.+.||+ .++ ..+...+-.     +..+.+.|-|...
T Consensus       349 i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh-ytG-~~l~~~~f~-----sEL~qv~W~P~~~  413 (566)
T KOG2315|consen  349 IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH-YTG-SLLHEKMFK-----SELLQVEWRPFND  413 (566)
T ss_pred             ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE-ecC-ceeehhhhh-----HhHhheeeeecCC
Confidence            88884 345778999999  666554      68899998 344 222222111     0367788887543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=1.2e-08  Score=61.80  Aligned_cols=38  Identities=21%  Similarity=0.605  Sum_probs=36.3

Q ss_pred             cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274          100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      +++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57788999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=1.3e-06  Score=74.83  Aligned_cols=170  Identities=15%  Similarity=0.121  Sum_probs=110.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      |.++.++||+.||.-.+                           .-.-++||||+.+||.+...|+|+++|+.. ..+..
T Consensus         1 W~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~   79 (282)
T PF15492_consen    1 WHLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV   79 (282)
T ss_pred             CceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence            35778899999988766                           447799999999999999999999999874 33333


Q ss_pred             eec-------CCCCeEEEEEecC------CCEEEEecCCCeEEEEEcCC-----CeeeEee------cCCceeEEEcCCC
Q 040274          105 MLY-------HQGPVSALAFHPN------GHLMATTGKECKIKIWDLRK-----YEVLQTL------TGHAKTLDFSQKG  160 (359)
Q Consensus       105 ~~~-------h~~~v~~l~~~p~------g~~l~s~~~d~~i~vwd~~~-----~~~~~~~------~~~v~~~~~s~~g  160 (359)
                      +..       -...|.++.|-+.      ...|++.+-+|.++-|-+..     .+..+++      +..|+++.|+|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            331       1245666666442      11466666777777776532     3344444      3458999999987


Q ss_pred             --cEEEEc-C----------CcEEEEcCCCCCcc----------cc---------ccc-----cccCCCCcceeEEEEcc
Q 040274          161 --LLAVGT-G----------SFAQILGDFSGSHN----------YS---------RYM-----GNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       161 --l~~~~~-d----------~~i~v~d~~~~~~~----------~~---------~~~-----~~~~~~~~~v~~~~~sp  203 (359)
                        |+.+|. .          ..+..|-+.....-          ..         .+.     .........|..+..||
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence              444442 1          13556654332110          00         000     00011234689999999


Q ss_pred             CCCEEEEEeCCCeEEEEEc
Q 040274          204 YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       204 ~~~~l~~g~~dg~~~i~~~  222 (359)
                      ||..|++.+.+|.+.+|.-
T Consensus       240 dg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CCCEEEEEEcCCeEEEEec
Confidence            9999999999998888854

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.81  E-value=1.6e-07  Score=87.27  Aligned_cols=138  Identities=12%  Similarity=0.138  Sum_probs=109.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCce
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAK  152 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~  152 (359)
                      +...++.|...|.|.+|+...++....+.  +|.+.|+++.++.+-..|.+++.|+.+..|+......++.+   +..+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            44578889999999999999998777766  79999999999999999999999999999999998888877   34579


Q ss_pred             eEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-----CCEEEEEeC-CCeEEEE
Q 040274          153 TLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-----EDVLGIGHS-MGWSGIL  220 (359)
Q Consensus       153 ~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~g~~-dg~~~i~  220 (359)
                      +++++|||-+.+...+.|.+||+.+ .+.+..+.+|.+    +|.++.|.-+     |.+++++.. +..+.+|
T Consensus       149 sl~is~D~~~l~~as~~ik~~~~~~-kevv~~ftgh~s----~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  149 SLCISPDGKILLTASRQIKVLDIET-KEVVITFTGHGS----PVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             eEEEcCCCCEEEeccceEEEEEccC-ceEEEEecCCCc----ceEEEEEEEeccccccceeeeccccccceeEE
Confidence            9999999933333357999999654 477788888765    8999999877     666654433 3334443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=4.3e-07  Score=84.04  Aligned_cols=139  Identities=13%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CCceeEEEcCC
Q 040274           82 VSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHAKTLDFSQK  159 (359)
Q Consensus        82 l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~v~~~~~s~~  159 (359)
                      +++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.  ....++++|+|
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            3455678999999999999999887654444557899999999999999999999999999998883  34688999999


Q ss_pred             C-cEE-E-EcCCcEEEEcCCCCCccccccccccC---CCCcceeEEEEccCCCEEEEE-eCCCeEEEEE
Q 040274          160 G-LLA-V-GTGSFAQILGDFSGSHNYSRYMGNSM---VKGYQIGKVSFRPYEDVLGIG-HSMGWSGILV  221 (359)
Q Consensus       160 g-l~~-~-~~d~~i~v~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~g-~~dg~~~i~~  221 (359)
                      | ++. + -..+.+.++|..+. +.+..+.....   .....+..+..+|....+++. -+.+.+.++.
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            9 333 3 35799999996554 44444333211   022367888888988855544 4456555544

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=7.8e-08  Score=85.36  Aligned_cols=127  Identities=19%  Similarity=0.260  Sum_probs=89.7

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg---~v~lwd~~~~~~~  102 (359)
                      .....+++|++||.+..                          ..+++.|..+......+..-|   .+.+|....+.+ 
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence            55556677777766544                          334444444444444443333   455555554443 


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cC---CceeEEEcCCC-cEEEEcCCcEEEEcCCC
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TG---HAKTLDFSQKG-LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~---~v~~~~~s~~g-l~~~~~d~~i~v~d~~~  177 (359)
                      ..+.||-+.++.++|+||+.+++|+..|..|++-....--.+.+| -|   .|..++.-++- |+++|.|++|++||...
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence            344599999999999999999999999999999877765556666 23   48899988888 89999999999999766


Q ss_pred             CC
Q 040274          178 GS  179 (359)
Q Consensus       178 ~~  179 (359)
                      +.
T Consensus       225 gk  226 (390)
T KOG3914|consen  225 GK  226 (390)
T ss_pred             CC
Confidence            53

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.74  E-value=8.1e-07  Score=80.68  Aligned_cols=139  Identities=12%  Similarity=0.127  Sum_probs=106.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGG-TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg-~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .|.-..+..++.-++.|..|| .+-|||..+++ +..+...-+.|.++..+|+|.+++.+.....|.+.|+.++.+...-
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id  439 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID  439 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence            677777777778899999999 89999999876 4455667889999999999999999999999999999998763322


Q ss_pred             ---cCCceeEEEcCCC-cEEEEc-----CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          148 ---TGHAKTLDFSQKG-LLAVGT-----GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       148 ---~~~v~~~~~s~~g-l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                         .+-|+.++|||++ +++-+.     ...|++||+..+ +..... +..    +--.+-+|.|++++|..-+..
T Consensus       440 kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vT-T~t----a~DfsPaFD~d~ryLYfLs~R  509 (668)
T COG4946         440 KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVT-TPT----AYDFSPAFDPDGRYLYFLSAR  509 (668)
T ss_pred             ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEec-CCc----ccccCcccCCCCcEEEEEecc
Confidence               3568999999999 776664     358999997554 333221 111    134667899999998766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=2.8e-07  Score=88.94  Aligned_cols=88  Identities=18%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .-.+|+|...+++.++.                         .+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            44567787777776654                         67899999999899999999999999988877666666


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~  139 (359)
                      .|..+|..+.|||+|..|+|+..-|.|.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            899999999999999999999999999999654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.7e-07  Score=86.37  Aligned_cols=136  Identities=21%  Similarity=0.306  Sum_probs=101.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-----------CCeEEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-----------ECKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-----------d~~i~vwd  137 (359)
                      .-+.+.|||.|.||+|-+..| |.+|--.+...+..| .|.+ |.-+.|||+.+||+|-+.           ...|.|||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            678899999999999998765 679976655556665 5555 788999999999999553           15799999


Q ss_pred             cCCCeeeEeecC---C---ceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE
Q 040274          138 LRKYEVLQTLTG---H---AKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       138 ~~~~~~~~~~~~---~---v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      +++|....+|..   +   -.-+.||.|+ +++.-..++|.||+...    ...+..... .-..|....|||.+.+||-
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl-ki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL-KISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc-CCccccCcccCCCcceEEE
Confidence            999998888732   1   2567899999 88887789999998532    222222222 1125888999999998884


Q ss_pred             Ee
Q 040274          211 GH  212 (359)
Q Consensus       211 g~  212 (359)
                      -+
T Consensus       364 wt  365 (698)
T KOG2314|consen  364 WT  365 (698)
T ss_pred             Ec
Confidence            33

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.70  E-value=3.6e-06  Score=87.87  Aligned_cols=154  Identities=9%  Similarity=-0.005  Sum_probs=102.4

Q ss_pred             eEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecC---------------CCCeEEEEEecCCCE-EEEecCCCeE
Q 040274           71 DLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYH---------------QGPVSALAFHPNGHL-MATTGKECKI  133 (359)
Q Consensus        71 ~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h---------------~~~v~~l~~~p~g~~-l~s~~~d~~i  133 (359)
                      +.++++| ++.++++.+.++.|++||+.++... .+.+.               ....+.++|+|+|.. +++-+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            4688888 5556677777889999998776432 22111               123467999999884 4555667899


Q ss_pred             EEEEcCCCeeeEe-------------e-----------cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccc
Q 040274          134 KIWDLRKYEVLQT-------------L-----------TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMG  187 (359)
Q Consensus       134 ~vwd~~~~~~~~~-------------~-----------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~  187 (359)
                      ++||+.++.....             +           -.+...++++++|  +++-+.++.|++||..+. ... .+.+
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~-tiaG  842 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-RVT-TLAG  842 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-eEE-EEec
Confidence            9999987543211             1           0134689999999  566667789999996443 221 1111


Q ss_pred             ccC----------CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          188 NSM----------VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       188 ~~~----------~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      ...          ........++++++|+++++-+.++.|++|...++..
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            100          0112467899999999888888999999998766553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.69  E-value=8.4e-06  Score=75.15  Aligned_cols=164  Identities=12%  Similarity=0.141  Sum_probs=106.2

Q ss_pred             ceeEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--c--ceEEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHS----GGTVTMWKPTTS--A--LLIKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~----dg~v~lwd~~~~--~--~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~  139 (359)
                      ..+.|+++|++.+|++++.    +|.|..|++...  .  .+............++++|++++|+++. .+|.|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            6788999999999998876    578999987754  2  3333433344557799999999988887 58999999998


Q ss_pred             C-CeeeE---ee-------------cCCceeEEEcCCC--cEEEEc-CCcEEEEcCCCCCccccccccccCCCCcceeEE
Q 040274          140 K-YEVLQ---TL-------------TGHAKTLDFSQKG--LLAVGT-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKV  199 (359)
Q Consensus       140 ~-~~~~~---~~-------------~~~v~~~~~s~~g--l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~  199 (359)
                      . +....   .+             ..++.++.|+|+|  ++++.. ...|.+|++......+........+.+.....+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            6 43221   11             1356899999999  444333 468999986554322222111112245568999


Q ss_pred             EEccCCCEEEEEeC-CCeEEEEEcCCCCCceeee
Q 040274          200 SFRPYEDVLGIGHS-MGWSGILVPRSSEPNFDSW  232 (359)
Q Consensus       200 ~~sp~~~~l~~g~~-dg~~~i~~~gs~~~~~~~~  232 (359)
                      .|+|+++++++.+. ++.+.++.....++.+...
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            99999998877665 5667776555344444433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=2.6e-07  Score=84.00  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCC-CCcc--e
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPT-TSAL--L  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~-~~~~--~  102 (359)
                      ..+.|...|..|++|+.                        .|.--.|-|  +...|++++.||.|++=.+. ++.+  .
T Consensus       146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t  225 (559)
T KOG1334|consen  146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT  225 (559)
T ss_pred             ceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence            78888899999999987                        444445666  34578899999999987754 3332  2


Q ss_pred             EEeecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCeeeEee------cC---CceeEEEcCCC---cEEEEcCCc
Q 040274          103 IKMLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYEVLQTL------TG---HAKTLDFSQKG---LLAVGTGSF  169 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~~~~~~------~~---~v~~~~~s~~g---l~~~~~d~~  169 (359)
                      ..+..|.++|+-++.-|+.. -|.+++.|+.+.-+|++...+...+      ..   ...+++..|..   +.+++.|..
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            34557999999999999654 5999999999999999987654333      11   24788888876   677888999


Q ss_pred             EEEEcCCCCCcc-----ccccccccC--CCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          170 AQILGDFSGSHN-----YSRYMGNSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       170 i~v~d~~~~~~~-----~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      +++||.+.-...     +..+..|..  .....|++++|+.++.-|+++..|-.+.
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY  361 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY  361 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence            999996543211     111111111  0223599999998776666555554433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.64  E-value=3.1e-07  Score=80.15  Aligned_cols=126  Identities=16%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             eEEEECCCCCEEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~  100 (359)
                      .++.+..|+..++++..                              -|++-.||| ..++|+..+..|+|++.|++...
T Consensus       168 NSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  168 NSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            88999999999999877                              689999999 56789999999999999998432


Q ss_pred             ce----EEee------------cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-CeeeEeec---------------
Q 040274          101 LL----IKML------------YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQTLT---------------  148 (359)
Q Consensus       101 ~~----~~~~------------~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~~~~~---------------  148 (359)
                      .-    ..+.            .-...|..+.|+++|+|+++-+. -+|++||+.. .+++.+++               
T Consensus       248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence            10    0011            11246788999999999988643 5799999954 45555552               


Q ss_pred             CCc---eeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          149 GHA---KTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       149 ~~v---~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      +.|   ..++|+.++  .++|++.+.+++|+...+
T Consensus       327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             cchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            122   568899987  788999999999995443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=5.4e-06  Score=78.17  Aligned_cols=137  Identities=12%  Similarity=0.029  Sum_probs=87.7

Q ss_pred             ceeEEEEcCCCCE-EEEEeCC---CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cC--CCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGV-VSLGHSG---GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GK--ECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~-l~tg~~d---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~--d~~i~vwd~~~~  141 (359)
                      .+....|+|+|+. ++..+.+   ..|.++|+.+++..... ...+.+.+..|+|||+.++.. +.  +..|+++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678999999984 6654433   46999999888654433 345667778999999876543 33  357888898877


Q ss_pred             eeeEee--cCCceeEEEcCCC--cEEEEc-CC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          142 EVLQTL--TGHAKTLDFSQKG--LLAVGT-GS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       142 ~~~~~~--~~~v~~~~~s~~g--l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      ......  .+......|+|||  ++..+. .+  .|+++|+..+ ....... . +     .....|+|||++|+..+..
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~~~rlt~-~-g-----~~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-SVEQVVF-H-G-----KNNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-CeEeCcc-C-C-----CcCceECCCCCEEEEEEcC
Confidence            643322  3334567899999  443332 23  6777776443 2212111 1 1     1124899999998877654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.62  E-value=1.7e-07  Score=78.77  Aligned_cols=72  Identities=21%  Similarity=0.419  Sum_probs=63.0

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc-eEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSAL-LIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .|++++-+| ...++++|+.||.|.+||.+.... ...+..|..+++-+-|+| ++..|++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            799999999 667888999999999999987743 445669999999999999 778899999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.4e-07  Score=87.07  Aligned_cols=161  Identities=17%  Similarity=0.212  Sum_probs=111.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT-------TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~-------~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~  141 (359)
                      .|..+.--.+.+.+++++.|.+|.+|.+.       |..+..++..|..+|+++.|-.+-++++++  ||.|.+||.--+
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig  814 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG  814 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccccc
Confidence            34444433455678899999999999976       334777888999999999999988877765  788999998877


Q ss_pred             eeeEee-----cCCceeEEEcCC--C--cEEE-EcCCcEEEEcCCCCCcccccccc-ccCCCCcceeEEEEccCCCEEEE
Q 040274          142 EVLQTL-----TGHAKTLDFSQK--G--LLAV-GTGSFAQILGDFSGSHNYSRYMG-NSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       142 ~~~~~~-----~~~v~~~~~s~~--g--l~~~-~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      .++...     .+.+..+..-++  .  ++++ +...+|.++|.+..+.....-.. ..+ +...+.+++..|.|++++.
T Consensus       815 r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  815 RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-PNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-CchheeEEEeccCcchhhH
Confidence            776544     233334433343  2  4444 45689999996654332221111 122 4457899999999999999


Q ss_pred             EeCCCeEEEEEcCCCCCceeeec
Q 040274          211 GHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       211 g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      |-++|.+.++..-.|- .|..|.
T Consensus       894 ~LSnGci~~LDaR~G~-vINswr  915 (1034)
T KOG4190|consen  894 ALSNGCIAILDARNGK-VINSWR  915 (1034)
T ss_pred             HhcCCcEEEEecCCCc-eeccCC
Confidence            9999998888765442 355553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.57  E-value=2.6e-06  Score=79.28  Aligned_cols=107  Identities=20%  Similarity=0.215  Sum_probs=90.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|+++.++.+-..|.+++.|+.|..|+......+..+.+....+.+++++|||..+++++  +.|++||+.+++.+.+|.
T Consensus       104 ~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  104 NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec
Confidence            799999999888999999999999999999999999999999999999999999999886  689999999999999996


Q ss_pred             CC---ceeEEEcCC-----C-cEEEE--cCCcEEEEcCCC
Q 040274          149 GH---AKTLDFSQK-----G-LLAVG--TGSFAQILGDFS  177 (359)
Q Consensus       149 ~~---v~~~~~s~~-----g-l~~~~--~d~~i~v~d~~~  177 (359)
                      +|   |++++|.-+     | ++..+  .+..+.+|-+..
T Consensus       182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            54   688888665     4 33222  345677776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.57  E-value=2.4e-06  Score=85.75  Aligned_cols=156  Identities=10%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             eeEEEEcC-CCC-EEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           70 TDLMRVNP-FNG-VVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        70 v~~l~~sp-~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      |.+-+|.. ... .++.+...+.|..||+++...+..++  ...|.|++++.+|.++.++.|+..|.+-+||+|=+.++.
T Consensus      1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence            34444433 233 67888888899999999876666554  456889999999999999999999999999999888887


Q ss_pred             eec----CCceeEEEcC---CC--cEEEEc--CCcEEEEcCCCCCcccccccc-------ccC-------CCCcceeEEE
Q 040274          146 TLT----GHAKTLDFSQ---KG--LLAVGT--GSFAQILGDFSGSHNYSRYMG-------NSM-------VKGYQIGKVS  200 (359)
Q Consensus       146 ~~~----~~v~~~~~s~---~g--l~~~~~--d~~i~v~d~~~~~~~~~~~~~-------~~~-------~~~~~v~~~~  200 (359)
                      ++.    .++..+..+|   ..  .++++.  .+.|.+|++.++.........       +..       ++.-....+.
T Consensus      1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred             cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee
Confidence            772    2344444433   22  444443  578999997765322111111       111       0111122233


Q ss_pred             EccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          201 FRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       201 ~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +..-+.++++|+.|+.++.|.+...
T Consensus      1312 ~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cccCCceeeecCCccceeeccCCCc
Confidence            4444556677777776666655443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.55  E-value=1.6e-07  Score=89.35  Aligned_cols=165  Identities=16%  Similarity=0.260  Sum_probs=123.0

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCC---EEEEEeCCCeEEEEeCCCC---cc
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNG---VVSLGHSGGTVTMWKPTTS---AL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~---~l~tg~~dg~v~lwd~~~~---~~  101 (359)
                      ..+.++|.|+-++++++                        .|....|+|...   ++++.+ +..-.+|++...   ..
T Consensus        28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aI  106 (1081)
T KOG0309|consen   28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAI  106 (1081)
T ss_pred             cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccce
Confidence            55677788888877776                        677888888543   344444 445568987532   33


Q ss_pred             eEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCe-eeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEc
Q 040274          102 LIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYE-VLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILG  174 (359)
Q Consensus       102 ~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~-~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d  174 (359)
                      ...+.+|...|+.+.|+|.. ..+++++.|..+..||+++.. ++..+   ....+.+.|+-..  +++.+.++.|.+||
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD  186 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence            44566999999999999954 468999999999999999853 55555   4457889998755  88888899999999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccC-CCEEEEEeCCCeEEEEE
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSGILV  221 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~~dg~~~i~~  221 (359)
                      ++.+..+...+.+|..    .|+++.|... ...+.+.+.||++.+|.
T Consensus       187 ~r~gs~pl~s~K~~vs----~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVS----SVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             ccCCCcceEEecccce----eeehHHHhhhhhhhhcccCCCCceeeec
Confidence            9888877777777644    6888887763 34577788888887764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.55  E-value=6.9e-06  Score=69.65  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=92.4

Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-e-eeEee----cCCceeEE
Q 040274           82 VSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-E-VLQTL----TGHAKTLD  155 (359)
Q Consensus        82 l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~-~~~~~----~~~v~~~~  155 (359)
                      +..++.|.++.+.++.-+..-..+.-..-.+++++++++++++++.+....|..|.+... + .+...    .++-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            445666777777766543222211111233889999999999999999999999988753 2 23323    35567889


Q ss_pred             EcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC--CEEEEEeCCCeEEEEEcC
Q 040274          156 FSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE--DVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       156 ~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~g~~dg~~~i~~~g  223 (359)
                      |+...  ++++..||++.|||++....+........-.|.+.+..+.|+|.|  ++|...-.-+++.++..-
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            99887  777888999999998776443332221111145589999999977  344444444555555443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=2.5e-07  Score=84.12  Aligned_cols=151  Identities=13%  Similarity=0.207  Sum_probs=116.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCC-Cee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRK-YEV-  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~-~~~-  143 (359)
                      -|+.+.|+..|..|++|+.|..|.+||..++.+...|. +|...|....|-|  +...+++++.||.|++=.+.. +.+ 
T Consensus       144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e  223 (559)
T KOG1334|consen  144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE  223 (559)
T ss_pred             ccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee
Confidence            68999999999999999999999999999988887776 7998998888988  456799999999999877653 222 


Q ss_pred             ----eEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCC---cceeEEEEccCCC-EEEEEe
Q 040274          144 ----LQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKG---YQIGKVSFRPYED-VLGIGH  212 (359)
Q Consensus       144 ----~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~-~l~~g~  212 (359)
                          +....++|.-++.-|+.   +++++.|+.+.-+|++... ....+..... ..   -..++++..|... .+++|+
T Consensus       224 ~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~-~~~~~v~L~~Ia~~P~nt~~faVgG  301 (559)
T KOG1334|consen  224 NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREA-DEKERVGLYTIAVDPRNTNEFAVGG  301 (559)
T ss_pred             cceecccccCccceeeecCCCCCcccccccccceeeeeeccCC-ccceeeeecc-CCccceeeeeEecCCCCccccccCC
Confidence                33336788888888877   9999999999999976542 2222222111 11   2567889999775 788999


Q ss_pred             CCCeEEEEE
Q 040274          213 SMGWSGILV  221 (359)
Q Consensus       213 ~dg~~~i~~  221 (359)
                      .|-+.++|.
T Consensus       302 ~dqf~RvYD  310 (559)
T KOG1334|consen  302 SDQFARVYD  310 (559)
T ss_pred             hhhhhhhhc
Confidence            998888764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=3.7e-07  Score=86.62  Aligned_cols=145  Identities=14%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---------------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKI  133 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---------------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i  133 (359)
                      ..+|+.|+....+|++|+.||.+.+..+.+..               .-+++.||.+.|..+.|+.+...|-|+..+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            46899999999999999999999998765432               123567999999999999999999999999999


Q ss_pred             EEEEcCCCeeeEee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc-ccccccCCCCcceeEEEEccCC
Q 040274          134 KIWDLRKYEVLQTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS-RYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       134 ~vwd~~~~~~~~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      .||-+-.++-.-.+     .+-|.+++|+.+|  +..+-.||.|.|=.+ .+..... .+.+      .....+.|++|.
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv-dGNRIwgKeLkg------~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV-DGNRIWGKELKG------QLLAHVLWSEDL  168 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee-ccceecchhcch------heccceeecccH
Confidence            99998877643322     3457899999999  555556776665543 2212211 1122      245678899999


Q ss_pred             CEEEEEeCCCeEEEE
Q 040274          206 DVLGIGHSMGWSGIL  220 (359)
Q Consensus       206 ~~l~~g~~dg~~~i~  220 (359)
                      ..++.+-.+|-+.++
T Consensus       169 ~~~Lf~~ange~hly  183 (1189)
T KOG2041|consen  169 EQALFKKANGETHLY  183 (1189)
T ss_pred             HHHHhhhcCCcEEEe
Confidence            888887777766654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=2e-06  Score=82.46  Aligned_cols=143  Identities=16%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC------------CCEEEEecCCCeEEEEE
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN------------GHLMATTGKECKIKIWD  137 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~------------g~~l~s~~~d~~i~vwd  137 (359)
                      -.++.|+|.| +|+.|+. ..|.+-|..+-+.+..+..|...|+.+.|.|-            .-++|++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4567888877 7888764 47889999999999999999999999999872            12577788889999999


Q ss_pred             cCCCeeeEee---cCCceeEEEcCCC------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCE
Q 040274          138 LRKYEVLQTL---TGHAKTLDFSQKG------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDV  207 (359)
Q Consensus       138 ~~~~~~~~~~---~~~v~~~~~s~~g------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~  207 (359)
                      ...+..+..+   ..++..++|-+.-      +++....++|.+|+..++......-..|.     ...|+.+.|. .+.
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVDPFDSRH  170 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeCCCCcce
Confidence            9988776666   4567888886632      67777789999999777655444444442     5777999994 467


Q ss_pred             EEEEeCCCeEEE
Q 040274          208 LGIGHSMGWSGI  219 (359)
Q Consensus       208 l~~g~~dg~~~i  219 (359)
                      +..-+..|++-+
T Consensus       171 ~~~l~s~g~vl~  182 (1062)
T KOG1912|consen  171 FCVLGSKGFVLS  182 (1062)
T ss_pred             EEEEccCceEEE
Confidence            777777776644

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.49  E-value=8.1e-06  Score=83.85  Aligned_cols=149  Identities=11%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC---------------CCcce--------EEeec------------------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT---------------TSALL--------IKMLY------------------  107 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~---------------~~~~~--------~~~~~------------------  107 (359)
                      .|.|++||||+.+|+....+|+|.+.+-.               ..+++        ..|.|                  
T Consensus       122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~  201 (928)
T PF04762_consen  122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV  201 (928)
T ss_pred             cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence            89999999999999999988888766421               00011        11111                  


Q ss_pred             ------CCCCeEEEEEecCCCEEEEecC---C---CeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEEcC----
Q 040274          108 ------HQGPVSALAFHPNGHLMATTGK---E---CKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVGTG----  167 (359)
Q Consensus       108 ------h~~~v~~l~~~p~g~~l~s~~~---d---~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~~d----  167 (359)
                            +...-..++|-.||.|||+++.   .   ..|+||+-. |....+-   .+--.+++|.|+| +++++..    
T Consensus       202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~  280 (928)
T PF04762_consen  202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR  280 (928)
T ss_pred             ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence                  2223467889999999998775   2   579999965 6543333   2334689999999 7777653    


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..|.+|. +++- ....+.-........|..+.|++|+.+||+...+. +.+|.
T Consensus       281 ~~VvFfE-rNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt  331 (928)
T PF04762_consen  281 HDVVFFE-RNGL-RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT  331 (928)
T ss_pred             cEEEEEe-cCCc-EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence            4666776 5542 22222111111334799999999999999987666 66653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.47  E-value=8.4e-06  Score=69.14  Aligned_cols=111  Identities=14%  Similarity=0.060  Sum_probs=85.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEE--eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-ee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-ALLIK--MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-VL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-~~  144 (359)
                      .++++++++++.++++.+....|..|.+... +.+..  ....++.-.+.+|+.....+|++..||++.|||+|... +.
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            4889999999999999999999999998753 33332  22344556788999999999999999999999999743 33


Q ss_pred             Eee-------cCCceeEEEcCCC---cEEEEc-CCcEEEEcCCCCC
Q 040274          145 QTL-------TGHAKTLDFSQKG---LLAVGT-GSFAQILGDFSGS  179 (359)
Q Consensus       145 ~~~-------~~~v~~~~~s~~g---l~~~~~-d~~i~v~d~~~~~  179 (359)
                      ...       .|.+..+.|++-|   |+..+. -+.+.|.|+++..
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            332       3568999999977   555554 4789999987653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.46  E-value=5.5e-05  Score=68.92  Aligned_cols=148  Identities=14%  Similarity=0.151  Sum_probs=89.8

Q ss_pred             EEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcceEEeecCC------------------C-------------CeEEE---
Q 040274           72 LMRVNPFNGVVSLGH-S-GGTVTMWKPTTSALLIKMLYHQ------------------G-------------PVSAL---  115 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~-~-dg~v~lwd~~~~~~~~~~~~h~------------------~-------------~v~~l---  115 (359)
                      .++++|||++|++.. . +..|.+.|+.+++.+..+.-..                  +             .+...   
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeee
Confidence            678888888887765 3 6788888887765443322100                  0             00010   


Q ss_pred             -----------EEec-CCCEEEEecCCCeEEEEEcCC-----CeeeEee----------cCCceeEEEcCCC--cEEEE-
Q 040274          116 -----------AFHP-NGHLMATTGKECKIKIWDLRK-----YEVLQTL----------TGHAKTLDFSQKG--LLAVG-  165 (359)
Q Consensus       116 -----------~~~p-~g~~l~s~~~d~~i~vwd~~~-----~~~~~~~----------~~~v~~~~~s~~g--l~~~~-  165 (359)
                                 .|.+ +|.+++.+.. |+|++.|+..     ...+..+          ++.+.-++++|+|  ++... 
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence                       1233 6777766666 9999999643     2223222          1122349999998  33322 


Q ss_pred             ---------cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 040274          166 ---------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSGILVPRSSE  226 (359)
Q Consensus       166 ---------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~-~dg~~~i~~~gs~~  226 (359)
                               ..+.|.++|+.+. +....+..-     ..+..++|+||++ +|++.. .++.+.++...++.
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTG-KRLRKIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCccccccCCCCEEEEEECCCC-eEEEEEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence                     1258999996554 444433322     2689999999999 777666 46778887765554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=4e-07  Score=79.50  Aligned_cols=151  Identities=15%  Similarity=0.010  Sum_probs=105.8

Q ss_pred             eEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-----eee
Q 040274           71 DLMRVNPFN-GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-----EVL  144 (359)
Q Consensus        71 ~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-----~~~  144 (359)
                      +.++|+-+- .+-++.+.+..|-+-|+.|+. ...| ...+.|.++.|...++++..|+..|.|..+|+|..     .+.
T Consensus       215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~-~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGH-QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhhccceeeecccccceeEEEEeeccc-cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            334665421 122444456677788888764 2333 35778999999998999999999999999999863     344


Q ss_pred             Eee--cCCceeEEEcC-CC--cEEEEcCCcEEEEcCCCCC--ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          145 QTL--TGHAKTLDFSQ-KG--LLAVGTGSFAQILGDFSGS--HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       145 ~~~--~~~v~~~~~s~-~g--l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      +.+  ...|+++..-. ++  +++.+.+|.|.+||.+...  ..+..|.+|..  ...-.-+...+.+..+++++.|.+.
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--LSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--cccccccccccccceEEEccCeeEE
Confidence            444  56677776555 33  8888999999999976542  23778888843  2223345566778889999999999


Q ss_pred             EEEEcCCC
Q 040274          218 GILVPRSS  225 (359)
Q Consensus       218 ~i~~~gs~  225 (359)
                      +||...++
T Consensus       371 RiWsl~~g  378 (425)
T KOG2695|consen  371 RIWSLDSG  378 (425)
T ss_pred             EEEecccC
Confidence            99876543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.44  E-value=5.5e-07  Score=93.23  Aligned_cols=155  Identities=18%  Similarity=0.253  Sum_probs=120.3

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .++.-+|...+.++|+.                        .|+.+.|+.+|+.+..+..||.+.+|.+. .++....++
T Consensus      2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred             eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence            55555676666677665                        78899999999999999999999999987 677778889


Q ss_pred             CCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCC---CeeeEee-cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          108 HQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRK---YEVLQTL-TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~---~~~~~~~-~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      |....+.+.|-.  ..+++++.   ++++.+||..-   ..++++. .+.++++++-|..  +++||.+|.|++||++..
T Consensus      2291 hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2291 HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence            999999988865  56777653   68899999753   2345554 5678999999998  889999999999996433


Q ss_pred             CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          179 SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                       ..     .|..    +.    +. ...++++|+..|.+.||-...
T Consensus      2369 -ql-----~h~~----~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2369 -QL-----RHTF----QA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             -HH-----HHHh----hh----hh-hhheeeccCcccceEEEEccc
Confidence             11     2211    22    44 678999999999999997653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=2.9e-06  Score=81.81  Aligned_cols=132  Identities=11%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT--  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~--  146 (359)
                      .++|++++  +.+|+.|..+|.|++++.. +.+ .+...|...      +-+|.+++||+.||+|.|-.+-+.+..++  
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            46666665  5689999999999999876 333 444455543      66899999999999999999888766554  


Q ss_pred             ecCCceeEEEcCCC-------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          147 LTGHAKTLDFSQKG-------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       147 ~~~~v~~~~~s~~g-------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      |..++.+++++|+-       +++||..| +.++.-..-+. ......+.  ..++|.++.|  .|+++|-++.+|+
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~--~eG~I~~i~W--~g~lIAWand~Gv  181 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSE--GEGPIHSIKW--RGNLIAWANDDGV  181 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeec--CccceEEEEe--cCcEEEEecCCCc
Confidence            47789999999982       77888777 87776221111 11222332  2347999999  6789999999885

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.39  E-value=4.7e-06  Score=72.06  Aligned_cols=161  Identities=9%  Similarity=0.119  Sum_probs=106.2

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------------ceeEEEEcCCC--CEEEEEeCCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------------RTDLMRVNPFN--GVVSLGHSGG   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------------~v~~l~~sp~~--~~l~tg~~dg   89 (359)
                      .++.|...|.||++|..                                        .|+.+.|-.++  ..++..+.|.
T Consensus        30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk  109 (460)
T COG5170          30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK  109 (460)
T ss_pred             eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence            78888899999999864                                        68889986644  3567777899


Q ss_pred             eEEEEeCCCC-------------------cc-----------------------eEEe-ecCCCCeEEEEEecCCCEEEE
Q 040274           90 TVTMWKPTTS-------------------AL-----------------------LIKM-LYHQGPVSALAFHPNGHLMAT  126 (359)
Q Consensus        90 ~v~lwd~~~~-------------------~~-----------------------~~~~-~~h~~~v~~l~~~p~g~~l~s  126 (359)
                      +|.+|.+...                   .+                       ...+ ..|.-.+++++|+.|...+++
T Consensus       110 tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS  189 (460)
T COG5170         110 TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS  189 (460)
T ss_pred             eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee
Confidence            9999986422                   00                       0011 256667889999998887777


Q ss_pred             ecCCCeEEEEEcCCCeeeEee---c--------CCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCc-----ccc-ccc
Q 040274          127 TGKECKIKIWDLRKYEVLQTL---T--------GHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSH-----NYS-RYM  186 (359)
Q Consensus       127 ~~~d~~i~vwd~~~~~~~~~~---~--------~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~-----~~~-~~~  186 (359)
                      + .|=.|.+|++........+   .        .-|++..|+|..   +...++.|.|.+-|++...-     ... .+.
T Consensus       190 a-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~  268 (460)
T COG5170         190 A-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTI  268 (460)
T ss_pred             c-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhcc
Confidence            5 5677999988643222222   1        126888999976   55666789999999874311     110 000


Q ss_pred             ---cccC--CCCcceeEEEEccCCCEEEEEeC
Q 040274          187 ---GNSM--VKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       187 ---~~~~--~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                         .+..  .....|..+.|++.|+++++-..
T Consensus       269 D~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         269 DGVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             CcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence               0000  01235888999999999887543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.34  E-value=4.3e-05  Score=69.78  Aligned_cols=135  Identities=13%  Similarity=0.096  Sum_probs=98.9

Q ss_pred             EcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC-eEEEEEcCCCeeeEee--cCC
Q 040274           75 VNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC-KIKIWDLRKYEVLQTL--TGH  150 (359)
Q Consensus        75 ~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~-~i~vwd~~~~~~~~~~--~~~  150 (359)
                      |++ +|.++++.|. |.+.|.+...+-.+.  .+|.+.|.-..+..++.-++.|..|| .+-|||.++++.....  -+.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~  403 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN  403 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccc
Confidence            455 5777777764 677777766554333  26778888888888888899999999 8999999988754444  467


Q ss_pred             ceeEEEcCCC-cEEEEcC-CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          151 AKTLDFSQKG-LLAVGTG-SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       151 v~~~~~s~~g-l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      |.++..+|+| .++++.+ ..|.++|+.++ .....-...    -..|+.+.|||+++++|-+--+|++
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS~----~~lItdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKSE----YGLITDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEecccc----cceeEEEEEcCCceeEEEecCccee
Confidence            8999999999 5555554 67888887665 222222222    2369999999999999999888864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.33  E-value=1.7e-05  Score=72.88  Aligned_cols=148  Identities=13%  Similarity=0.249  Sum_probs=104.5

Q ss_pred             eEEEECCCCCEEEEecc---------------------------------ceeEEEEcCCCCEEEEEe--CCCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------------RTDLMRVNPFNGVVSLGH--SGGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------------~v~~l~~sp~~~~l~tg~--~dg~v~lwd~   96 (359)
                      ..|.|++.|.+|+.--.                                 +|+..+|+|.+..+++.+  .+-++.++|+
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            78888899988765322                                 899999999887665544  6778999998


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCC---CeEEEEEcCCCe-eeEeecCC-ceeEEEcCCC-cEEEE-----
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE---CKIKIWDLRKYE-VLQTLTGH-AKTLDFSQKG-LLAVG-----  165 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d---~~i~vwd~~~~~-~~~~~~~~-v~~~~~s~~g-l~~~~-----  165 (359)
                      +..  + .+......=+.+.|+|.+++++.++-|   |.|-+||....- ++..+.+. .+-+.|+|+| ++-.+     
T Consensus       306 r~N--l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         306 RGN--L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             ccc--e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence            865  2 333445556778999999999998765   789999987643 44456544 4667899999 43333     


Q ss_pred             --cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          166 --TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       166 --~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                        .|+.|.|||+... ...            ..+.+.|.|.|++..+.+..+
T Consensus       383 ~~~Dn~i~l~~v~g~-~~f------------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         383 LRVDNSIKLWDVYGA-KVF------------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             cccCcceEEEEecCc-hhh------------hhhhccccCCcccceeeccCC
Confidence              2678999995332 110            356678888888777666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.33  E-value=0.00026  Score=61.98  Aligned_cols=151  Identities=14%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             ceeEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcceEEeec-----CCCCeEEEEEecCCCEEEEecCC--------CeEE
Q 040274           69 RTDLMRVN-PFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-----HQGPVSALAFHPNGHLMATTGKE--------CKIK  134 (359)
Q Consensus        69 ~v~~l~~s-p~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-----h~~~v~~l~~~p~g~~l~s~~~d--------~~i~  134 (359)
                      ....+++. +++ .|+.+..+ .+.++|+.+++....+..     .....+.++++|+|++.++....        |.|+
T Consensus        41 ~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   41 GPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             SEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence            46777887 565 45555544 455669988854433332     34567899999999987776543        5688


Q ss_pred             EEEcCCCeeeEee--cCCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccc---cccccccCCCCcceeEEEEccCCC
Q 040274          135 IWDLRKYEVLQTL--TGHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNY---SRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       135 vwd~~~~~~~~~~--~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      .++.. ++.....  -...+.++|+|++  + ++-+..+.|..|++.......   ..+..... .....-.+++..+|+
T Consensus       119 ~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  119 RIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-
T ss_pred             EECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-CCcCCCcceEcCCCC
Confidence            88877 5543333  3446899999999  3 344556888888864332211   12222111 111367899999999


Q ss_pred             EEEEEeCCCeEEEEEcC
Q 040274          207 VLGIGHSMGWSGILVPR  223 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~g  223 (359)
                      +.++....+.+.++.+.
T Consensus       197 l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEETTTEEEEEETT
T ss_pred             EEEEEcCCCEEEEECCC
Confidence            88888888888888765

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=1.7e-05  Score=74.47  Aligned_cols=110  Identities=9%  Similarity=0.013  Sum_probs=76.9

Q ss_pred             ceeEEEEcC-CCCEEEEE----eCCCe----EEEEeCCCCcc--eE-EeecCCCCeEEEEEecCCCEEEEecCCCeEEEE
Q 040274           69 RTDLMRVNP-FNGVVSLG----HSGGT----VTMWKPTTSAL--LI-KMLYHQGPVSALAFHPNGHLMATTGKECKIKIW  136 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg----~~dg~----v~lwd~~~~~~--~~-~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vw  136 (359)
                      ...++.||- +...+.|.    +.+|.    -++|++...+.  +. +-......|.+++++|+...|+.|+.||+|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            456777776 44455553    23443    34666654432  11 112567889999999999999999999999999


Q ss_pred             EcCCCeeeEee-cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          137 DLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       137 d~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      |...+.....- .-.++.++|+|+|  +++++..|.+.+||+.-+
T Consensus       287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99876443332 3346899999999  555666699999997543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.31  E-value=3.2e-05  Score=80.99  Aligned_cols=108  Identities=15%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             eEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeec-------------C--------CCCeEEEEEecCCCEEEEec
Q 040274           71 DLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLY-------------H--------QGPVSALAFHPNGHLMATTG  128 (359)
Q Consensus        71 ~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~-------------h--------~~~v~~l~~~p~g~~l~s~~  128 (359)
                      +.|+++|++..| ++-+.++.|++||+.++.......+             +        -..-.+++|+++|.++++-+
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs  822 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS  822 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence            458999998854 4555678999999987643211100             0        01235889999999988888


Q ss_pred             CCCeEEEEEcCCCeeeEee-c---------------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          129 KECKIKIWDLRKYEVLQTL-T---------------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       129 ~d~~i~vwd~~~~~~~~~~-~---------------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      .++.|++||..++...... .               ..+..++++++|  +++-+.++.|++||+.+.
T Consensus       823 ~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        823 YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            9999999999877654322 1               135789999999  566667789999997554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.30  E-value=0.00019  Score=62.72  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSG--------GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d--------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~  139 (359)
                      ..+.++++|+|.+.++....        |.|..++.. ++... +...-...+.++|+|+++.|+ +-+..+.|..||+.
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccceeEEEecc
Confidence            67889999999877776543        568888877 54333 333355678999999998765 56678889999986


Q ss_pred             CC-e------eeEeecC---CceeEEEcCCC-cE-EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEc-cCCC
Q 040274          140 KY-E------VLQTLTG---HAKTLDFSQKG-LL-AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFR-PYED  206 (359)
Q Consensus       140 ~~-~------~~~~~~~---~v~~~~~s~~g-l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~  206 (359)
                      .. .      .+..+..   ..-.+++..+| ++ +....+.|.++|.. + .....+....    ..+++++|. |+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~----~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPV----PRPTNCAFGGPDGK  238 (246)
T ss_dssp             TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SS----SSEEEEEEESTTSS
T ss_pred             ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCC----CCEEEEEEECCCCC
Confidence            32 1      1222222   26789999999 44 44457899999943 3 4444443331    268999994 6767


Q ss_pred             EEEEEe
Q 040274          207 VLGIGH  212 (359)
Q Consensus       207 ~l~~g~  212 (359)
                      .|++.+
T Consensus       239 ~L~vTt  244 (246)
T PF08450_consen  239 TLYVTT  244 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=5.9e-06  Score=77.50  Aligned_cols=71  Identities=14%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~  141 (359)
                      .|.|++++|+...++.|+.||+|.+||...+..  .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            799999999999999999999999999887633  23334556789999999999999999999999998643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.28  E-value=4e-05  Score=72.32  Aligned_cols=167  Identities=15%  Similarity=0.102  Sum_probs=91.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSA  114 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~  114 (359)
                      ..+.++|+|++++.++.                 .....+|.+.+ .+|+-..+++|.|+.--.......+.. ...+..
T Consensus        36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~  113 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEK  113 (443)
T ss_dssp             SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------SS-EEE
T ss_pred             eeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-Ccccce
Confidence            88999999999999877                 66778898844 566666688899963222232223322 122333


Q ss_pred             EEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC-ceeEEEcCCC-cEEEEcCCcEEEEcCCCCC-----------cc
Q 040274          115 LAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH-AKTLDFSQKG-LLAVGTGSFAQILGDFSGS-----------HN  181 (359)
Q Consensus       115 l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~-----------~~  181 (359)
                      +-.   |.+|+..+.+ .|.+||..+++.+..+.-. |..+.||++| +++...+..+.|++. ...           ..
T Consensus       114 If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~-~~~~~~~~~~~g~e~~  188 (443)
T PF04053_consen  114 IFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKY-NLEAVAAIPEEGVEDA  188 (443)
T ss_dssp             EE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE--HHHHHHBTTTB-GGG
T ss_pred             EEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEe-cchhcccccccCchhc
Confidence            332   7777776655 8999999999999999654 7999999999 777777888888862 211           02


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      ...+...    ...|.+..|..+  .++-.+.. .+..++ ++.-+.+...+
T Consensus       189 f~~~~E~----~~~IkSg~W~~d--~fiYtT~~-~lkYl~-~Ge~~~i~~ld  232 (443)
T PF04053_consen  189 FELIHEI----SERIKSGCWVED--CFIYTTSN-HLKYLV-NGETGIIAHLD  232 (443)
T ss_dssp             EEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEEEE-TTEEEEEEE-S
T ss_pred             eEEEEEe----cceeEEEEEEcC--EEEEEcCC-eEEEEE-cCCcceEEEcC
Confidence            2222221    226888999766  44444444 444433 33333444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.28  E-value=6.7e-06  Score=78.64  Aligned_cols=135  Identities=15%  Similarity=0.269  Sum_probs=95.0

Q ss_pred             ceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeE
Q 040274           69 RTDLMRVNPFN-GVVSLGHSGGTVTMWKPTTS-ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~  145 (359)
                      .|+.+.|+|++ ..+++++.|-.|..||+++. .++..+..-......+.|+.-...+.+.+....|.+||.+.| .++.
T Consensus       116 aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~  195 (1081)
T KOG0309|consen  116 AITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC  195 (1081)
T ss_pred             ceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE
Confidence            89999999965 57899999999999999875 456666655555678899874444555567778999999986 4677


Q ss_pred             eecCCc---eeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          146 TLTGHA---KTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       146 ~~~~~v---~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      ++.+++   +.++|..--   +++++.|++|..||-.......    .+......+|+.-+|.|.|.-
T Consensus       196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~----~~~vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES----KRTVTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             EecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc----ceeccccCcceeccccccCce
Confidence            887765   555665533   8899999999999954332111    111112336777777776543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=1.2e-06  Score=85.25  Aligned_cols=139  Identities=12%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC--eEEEEEcCC-CeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC--KIKIWDLRK-YEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~--~i~vwd~~~-~~~~~  145 (359)
                      ..+|++|+-+.+.|+.|+..|.|.+|++.+|.......+|..+|+-+.-+.+|.++++.+...  -.-+|++.+ +.+.+
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~H 1182 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRH 1182 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccc
Confidence            689999999999999999999999999999999999999999999999888999988776543  467999864 56677


Q ss_pred             eecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE
Q 040274          146 TLTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       146 ~~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      +|.. -.++.|+...  -+.++......|||+.+. ....+|..........-+++.|+|+..+++
T Consensus      1183 sf~e-d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1183 SFDE-DKAVKFSNSLQFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             cccc-cceeehhhhHHHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            7743 3567787766  344555577899997665 444444333221233446778888877665

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.25  E-value=3.7e-05  Score=70.71  Aligned_cols=135  Identities=12%  Similarity=0.164  Sum_probs=93.6

Q ss_pred             eEEEEcCCCCEEEEEe-----------CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec--CCCeEEEEE
Q 040274           71 DLMRVNPFNGVVSLGH-----------SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG--KECKIKIWD  137 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~-----------~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~--~d~~i~vwd  137 (359)
                      ..+.|++.|.+|++--           ....++|+++....+.... .-.++|...+|+|.++.|++++  .+-.+.++|
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecc
Confidence            4567888888765421           1235788887744433332 5689999999999888766554  688899999


Q ss_pred             cCCCeeeEee-cCCceeEEEcCCC--cEEEEcC---CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          138 LRKYEVLQTL-TGHAKTLDFSQKG--LLAVGTG---SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       138 ~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ++.. ....+ ...-+.+.|||.+  ++.++.|   |.+.+||....-.....+.+.      ...-+.|+||+.++.+.
T Consensus       305 lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~------n~s~~~wspd~qF~~~~  377 (561)
T COG5354         305 LRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL------NTSYCDWSPDGQFYDTD  377 (561)
T ss_pred             cccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC------CceEeeccCCceEEEec
Confidence            9966 55555 4556889999999  6666655   789999965443333344333      35567899999998876


Q ss_pred             eC
Q 040274          212 HS  213 (359)
Q Consensus       212 ~~  213 (359)
                      ..
T Consensus       378 ~t  379 (561)
T COG5354         378 TT  379 (561)
T ss_pred             CC
Confidence            54

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=7e-06  Score=73.30  Aligned_cols=132  Identities=14%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             eEEEECCCCCEEEEeccceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCC-EEEEecC
Q 040274           52 ILWILPSSGRYMAVAGRRTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGH-LMATTGK  129 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~-~l~s~~~  129 (359)
                      |++..++..+.|..+- ...++..+. .+.-++.|-  | |++.+..+.+...-+.+|...|.+++|+|..+ ++..++.
T Consensus       139 f~v~r~~gcrli~y~~-~~s~lv~sQks~qa~lpGv--G-v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl  214 (463)
T KOG1645|consen  139 FSVGRNAGCRLIGYDE-SSSTLVVSQKSGQALLPGV--G-VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL  214 (463)
T ss_pred             eeeeecCCceEEeccc-ccceeeeeccchhhcCCcc--c-eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc
Confidence            5555555554444432 122222222 222244443  3 88888877777777778899999999999766 7888999


Q ss_pred             CCeEEEEEcCCCeeeEee--cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccccccc
Q 040274          130 ECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMG  187 (359)
Q Consensus       130 d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~  187 (359)
                      +..|+|.|+++..++.++  ...+++++|.-+.   +++|-..|.|.|||++........+..
T Consensus       215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence            999999999998887777  5568999999887   667777899999999877655544433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.25  E-value=3.2e-05  Score=67.86  Aligned_cols=96  Identities=20%  Similarity=0.357  Sum_probs=71.3

Q ss_pred             EEEEEeCCCeEEEEeC--CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-Eee---cCCceeE
Q 040274           81 VVSLGHSGGTVTMWKP--TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-QTL---TGHAKTL  154 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~--~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-~~~---~~~v~~~  154 (359)
                      +...|...|.|.+-.+  ..-.++.++.+|.+.+++++|.|....|++|..|..+.+||+--..-+ ..+   ...|..+
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            3344555565655543  344678889999999999999999999999999999999999754322 222   3346666


Q ss_pred             EEcCCC--cEEEEcCCcEEEEcCC
Q 040274          155 DFSQKG--LLAVGTGSFAQILGDF  176 (359)
Q Consensus       155 ~~s~~g--l~~~~~d~~i~v~d~~  176 (359)
                      ++-+.-  +++++.||.|.+||+.
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEecc
Confidence            665554  8899999999999975

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=7.1e-05  Score=72.25  Aligned_cols=106  Identities=10%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCC------------CEEEEEeCCCeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFN------------GVVSLGHSGGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~------------~~l~tg~~dg~v~lwd~~   97 (359)
                      ..++|+|.| .||.|+.                      .|+.+.|.|-.            -.|+++.-.|.|.+||..
T Consensus        19 ~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             cccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            567788887 4566555                      78999997732            146777788999999999


Q ss_pred             CCcceEEeecCCCCeEEEEEec---CC-CEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcC
Q 040274           98 TSALLIKMLYHQGPVSALAFHP---NG-HLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQ  158 (359)
Q Consensus        98 ~~~~~~~~~~h~~~v~~l~~~p---~g-~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~  158 (359)
                      .+..+..+..|..++..++|-+   +. ..|+.-....+|.+|+..+|+.+..+.   ....|+.+.|
T Consensus        98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            9988888989999999999976   33 356677777899999999998877772   2235566665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=1.6e-05  Score=75.95  Aligned_cols=168  Identities=12%  Similarity=0.136  Sum_probs=119.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------------------ceeEEEEcCCCCEEEEEeCCCeEEE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------------------RTDLMRVNPFNGVVSLGHSGGTVTM   93 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------------------~v~~l~~sp~~~~l~tg~~dg~v~l   93 (359)
                      .|+.|.....|+++||.                                      +|..+.|+..++.|.|...+|.|.+
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence            78999999999999987                                      7899999999999999999999999


Q ss_pred             EeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-EeecC-CceeEEEcCCC--cEEEEcC
Q 040274           94 WKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-QTLTG-HAKTLDFSQKG--LLAVGTG  167 (359)
Q Consensus        94 wd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-~~~~~-~v~~~~~s~~g--l~~~~~d  167 (359)
                      |=+-.+.....+.  ...+.|.+++|+.+|..++..-.||.|.|=.+...... ..+.+ +...+.||+|.  ++.+-..
T Consensus        98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence            9887775443332  34567999999999999999999999888766543221 12222 45688999998  5666667


Q ss_pred             CcEEEEcCCCCCcc-------ccccccccCCCCcceeEEEEc--------cCCCEEEEEeCCCeEEEE
Q 040274          168 SFAQILGDFSGSHN-------YSRYMGNSMVKGYQIGKVSFR--------PYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       168 ~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s--------p~~~~l~~g~~dg~~~i~  220 (359)
                      |.+++||....-..       +........ .+..|..+.|.        |+...|+++..+|.+.|.
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~-~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSN-FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecC-CCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            89999995332100       000000000 11235556654        588899999999987764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.22  E-value=2.7e-05  Score=69.52  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=99.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----eEEeecCCCCeEEEEEecCCCEEEEe---cCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL----LIKMLYHQGPVSALAFHPNGHLMATT---GKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~----~~~~~~h~~~v~~l~~~p~g~~l~s~---~~d~~i~vwd~~~~  141 (359)
                      ....+..+|++.++|++..+....+++......    +..+ +-...-+++.|..+......+   +....+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            455667788999999998877766666553322    2222 223333555555555444444   44455556655544


Q ss_pred             eeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          142 EVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       142 ~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      .+...+  -.-+++++|+||+  ++++..|..|+|-........-..+.+|..    -|..++..++ ..|++|+.|+++
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e----FVS~isl~~~-~~LlS~sGD~tl  217 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE----FVSTISLTDN-YLLLSGSGDKTL  217 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh----heeeeeeccC-ceeeecCCCCcE
Confidence            443333  2336899999999  788888999998764443223334455654    6888887765 458999999999


Q ss_pred             EEEEcCCCCCceeeecc
Q 040274          218 GILVPRSSEPNFDSWVA  234 (359)
Q Consensus       218 ~i~~~gs~~~~~~~~~~  234 (359)
                      ++|.-.++..- +.+++
T Consensus       218 r~Wd~~sgk~L-~t~dl  233 (390)
T KOG3914|consen  218 RLWDITSGKLL-DTCDL  233 (390)
T ss_pred             EEEecccCCcc-cccch
Confidence            99876665432 44443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.21  E-value=8.8e-05  Score=76.40  Aligned_cols=172  Identities=12%  Similarity=0.171  Sum_probs=111.7

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeC---CCeEEEEeCCC--
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHS---GGTVTMWKPTT--   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~---dg~v~lwd~~~--   98 (359)
                      ..++|-.||.|+|+.+-                            --.+++|-|.|++||+...   ...|.+|.-+.  
T Consensus       213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr  292 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR  292 (928)
T ss_pred             eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence            88899999999987553                            3468899999999998764   34566776432  


Q ss_pred             -CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEee----cCCceeEEEcCCC---cEEEEcCC
Q 040274           99 -SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTL----TGHAKTLDFSQKG---LLAVGTGS  168 (359)
Q Consensus        99 -~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~----~~~v~~~~~s~~g---l~~~~~d~  168 (359)
                       |+....+......|..+.|++|+..||....|. |.+|-..++.-  .+.+    ...+..+.|+|..   +...+.+|
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence             222222223456899999999999999977666 99998877642  2233    1234558898865   44455445


Q ss_pred             cEEEEcC----CCCC--------------------------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          169 FAQILGD----FSGS--------------------------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       169 ~i~v~d~----~~~~--------------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      .+..++.    ..+.                          ..+.+...........|.+++|++++..+++-..||.+.
T Consensus       372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~  451 (928)
T PF04762_consen  372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS  451 (928)
T ss_pred             cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence            5544332    1110                          000011011111234799999999998899999999888


Q ss_pred             EEEcCC
Q 040274          219 ILVPRS  224 (359)
Q Consensus       219 i~~~gs  224 (359)
                      +|....
T Consensus       452 ~~~~~~  457 (928)
T PF04762_consen  452 IYEWDL  457 (928)
T ss_pred             EEEecC
Confidence            887443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.20  E-value=0.00029  Score=62.28  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             EEEECCCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEe-----------------
Q 040274           53 LWILPSSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGH-----------------   86 (359)
Q Consensus        53 ~l~~spdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~-----------------   86 (359)
                      .-.||+||++|.+.-.                             .-+.|.+.||+..|+++.                 
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4568899998887543                             567788899997777653                 


Q ss_pred             -CCCeEEEEeCCCCcceEE--e--ecCCCCeEEEEEecCCCEEEEecCCC-------eEEEEEcCCCeeeEee-------
Q 040274           87 -SGGTVTMWKPTTSALLIK--M--LYHQGPVSALAFHPNGHLMATTGKEC-------KIKIWDLRKYEVLQTL-------  147 (359)
Q Consensus        87 -~dg~v~lwd~~~~~~~~~--~--~~h~~~v~~l~~~p~g~~l~s~~~d~-------~i~vwd~~~~~~~~~~-------  147 (359)
                       .+.++.+.|..+|+.+..  +  ..|.-.|..++++++|..++..-..|       -|-+++..  ..+..+       
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHH
Confidence             133466677788877665  4  23777899999999987655443222       24444433  222222       


Q ss_pred             ---cCCceeEEEcCCC-cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          148 ---TGHAKTLDFSQKG-LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       148 ---~~~v~~~~~s~~g-l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                         .+.+-+|+++++| +++++  ..+.+.+||..++ ..+....-.      .++.++-.+++ ++++.+..
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg-~~~~~~~l~------D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG-RLLGSVPLP------DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC-CEeeccccC------ceeeeeecCCc-eEEeCCCc
Confidence               4668999999999 55444  4689999995544 443333332      47777777776 55544443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.16  E-value=7.2e-07  Score=83.85  Aligned_cols=152  Identities=9%  Similarity=0.091  Sum_probs=101.3

Q ss_pred             ceeEEEEcC-CCCEEEEEe----CCCeEEEEeCCCC--cce--EEeec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNP-FNGVVSLGH----SGGTVTMWKPTTS--ALL--IKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~----~dg~v~lwd~~~~--~~~--~~~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      .|++++|++ |.++||.|.    .|..+.|||+.++  .|.  ..|.+ -.....+++|..+.+++.+|.....+.++|+
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl  183 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL  183 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence            899999999 777888885    4678999999876  222  22322 3345678999989999999999999999999


Q ss_pred             CCC-eeeEeec-CCceeEEEcC-CC-cEEEEcCCcEEEEcC-CCCCccccccccccCCCCcceeEEEEccCC-CEEEEEe
Q 040274          139 RKY-EVLQTLT-GHAKTLDFSQ-KG-LLAVGTGSFAQILGD-FSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGH  212 (359)
Q Consensus       139 ~~~-~~~~~~~-~~v~~~~~s~-~g-l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~  212 (359)
                      |.. .....+. ..+..+..+| .+ +++...||.|-+||. ......+..+..........+..++|+|.. ..|++.+
T Consensus       184 Rqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~  263 (783)
T KOG1008|consen  184 RQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS  263 (783)
T ss_pred             hhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence            942 2233332 3466777888 44 888888999999994 333233322222111011248999999964 3344444


Q ss_pred             C-CCeEEEE
Q 040274          213 S-MGWSGIL  220 (359)
Q Consensus       213 ~-dg~~~i~  220 (359)
                      . .++++.+
T Consensus       264 RdS~tIrly  272 (783)
T KOG1008|consen  264 RDSITIRLY  272 (783)
T ss_pred             cCcceEEEe
Confidence            4 4556654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.12  E-value=9.3e-06  Score=68.58  Aligned_cols=140  Identities=11%  Similarity=0.061  Sum_probs=88.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcc-eEEeecCCCCeEEEEEecCCCEEEEecC-----CCeEEEEEcCCCeeeEee---cC
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSAL-LIKMLYHQGPVSALAFHPNGHLMATTGK-----ECKIKIWDLRKYEVLQTL---TG  149 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~p~g~~l~s~~~-----d~~i~vwd~~~~~~~~~~---~~  149 (359)
                      ++-++++..||.+-+.+.+.--. ...+..-.....+.++...++++.+++.     -+..+.|+++....+..-   ..
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            45688899999999998764111 1111111111223333345555544332     234667776643221111   23


Q ss_pred             CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 040274          150 HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       150 ~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~  222 (359)
                      .|++++-+|..   +++++.||.+.+||.++...+...+..|..    .++.+.|+| ++..|++++.||.+-.|..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~----~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA----EIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh----hhhheeccCCCchheeEecCCCcEEEEcC
Confidence            48888888876   556667899999998887666777777765    899999999 5688999999997666544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.07  E-value=8.3e-05  Score=69.92  Aligned_cols=140  Identities=16%  Similarity=0.246  Sum_probs=85.7

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCe--EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-CC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGT--VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-EC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~--v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~--~i~vwd~~~~~  142 (359)
                      .-...+|+|||..|+.++ .||.  |.++|+.++. +..+....+.-+.-.|+|||+.++..+. .|  .|.++|+..+.
T Consensus       239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            455678999998766554 5664  6666777665 3335444455557899999999877654 34  47777777665


Q ss_pred             eeE-eec-CCceeEEEcCCC--cEEEEc-CCc--EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          143 VLQ-TLT-GHAKTLDFSQKG--LLAVGT-GSF--AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       143 ~~~-~~~-~~v~~~~~s~~g--l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ... +.. +.-....|||||  ++..+. +|.  |.++|+..+.. .. .....    ......+|.|+|..+...+..+
T Consensus       318 ~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~-~lt~~----~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         318 VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IR-ILTST----YLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EE-Ecccc----ccCCCCCcCCCCceEEEeccCC
Confidence            422 222 223478899999  443332 444  66676544432 22 22221    1355667888888877666555

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.04  E-value=0.00054  Score=62.52  Aligned_cols=88  Identities=8%  Similarity=-0.019  Sum_probs=68.2

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC----------CCeEEEEEcCCCeeeEeecCC--------
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK----------ECKIKIWDLRKYEVLQTLTGH--------  150 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~--------  150 (359)
                      +.|.+.|..+++.+..+.....+- .+ ++|||+.|+.+..          +..|.+||..+++.+..+..+        
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999888887544443 34 9999998877766          788999999999999888421        


Q ss_pred             --ceeEEEcCCC-cEE-EE-c-CCcEEEEcCCCC
Q 040274          151 --AKTLDFSQKG-LLA-VG-T-GSFAQILGDFSG  178 (359)
Q Consensus       151 --v~~~~~s~~g-l~~-~~-~-d~~i~v~d~~~~  178 (359)
                        ...+++|||| ++. .. . ++.|.++|+...
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence              2488999999 444 33 2 689999996554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.6e-05  Score=73.56  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeE-EEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVS-ALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~-~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+--+.|+|.-.+||++..+|.|-++.++ .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.++..+...
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            47788999999999999999999999888 788889887787777 9999999999999999999999999999887773


Q ss_pred             ----cCCceeEEEcC
Q 040274          148 ----TGHAKTLDFSQ  158 (359)
Q Consensus       148 ----~~~v~~~~~s~  158 (359)
                          ...|+++-|++
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence                45678888864

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.02  E-value=4.4e-05  Score=66.19  Aligned_cols=152  Identities=14%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEeecCC-----CCeEEEEEecC-CCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS---ALLIKMLYHQ-----GPVSALAFHPN-GHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~---~~~~~~~~h~-----~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~  139 (359)
                      .++++.|+.|...++++ .|=.|.+|++.-.   -.+..++.|.     .-|++..|+|. .+.+..++..|.|++-|+|
T Consensus       174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            68999999988877776 4678999997632   2244455554     35889999994 3456677788999999998


Q ss_pred             CCee------eEee-------------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccC--------C
Q 040274          140 KYEV------LQTL-------------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSM--------V  191 (359)
Q Consensus       140 ~~~~------~~~~-------------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------~  191 (359)
                      ....      +...             ...|..+.|+++| ++.+-.-.+|.|||+.....++.+++.|..        .
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y  332 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY  332 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence            5321      1110             1347889999999 666666689999998766555555433311        0


Q ss_pred             CCcc---eeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          192 KGYQ---IGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       192 ~~~~---v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ....   -..+.||.|...+++|+......|+-
T Consensus       333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hccceeeeEEEEecCCcccccccccccceeeec
Confidence            0111   23578888888888888877655553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.01  E-value=1.3e-05  Score=48.14  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=26.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                      .|++|+|+|++.+|++|+.|+.|++||
T Consensus        13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   13 SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEEecccccceeeCCCCEEEEEC
Confidence            799999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00037  Score=67.71  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=90.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC-----CCEEEEecCCCeEEEEEcCCC-----eeeEee
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-----GHLMATTGKECKIKIWDLRKY-----EVLQTL  147 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~-----g~~l~s~~~d~~i~vwd~~~~-----~~~~~~  147 (359)
                      +|.++++||.||+|.|-.+.+.+...++. -..++.+++++|+     .+.+++||..| +.++.-+-.     ..++.-
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            68999999999999999988877666553 3567899999997     56799999988 777754321     123444


Q ss_pred             cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccC-CCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          148 TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSM-VKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       148 ~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      .|+|.++.|..+ +++-..|-.|+|||+.........-..+.. .+..-...+.|.+.. .|++|-.|.+
T Consensus       160 eG~I~~i~W~g~-lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v  227 (846)
T KOG2066|consen  160 EGPIHSIKWRGN-LIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSV  227 (846)
T ss_pred             ccceEEEEecCc-EEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeE
Confidence            789999999644 777777888999996554222111111111 112234567787654 4666665543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.00  E-value=0.00021  Score=62.84  Aligned_cols=155  Identities=18%  Similarity=0.147  Sum_probs=104.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC----CCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT----TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~----~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      +++++.++++...|++|-.+|+|.-+.+.    ....+.....|...|..+-|+-....+++.+.|..+.---...+.-+
T Consensus        70 ~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   70 PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             CceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence            79999999999999999999999988754    34556677799999999999988889999999887654444444444


Q ss_pred             Eee--cCCceeEEEcCCCcEEEEcCCcEEEEcCC-CCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          145 QTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDF-SGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       145 ~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..+  ....+++.+.-.--+.+...|.|.+..+. +.-..+..+.+|.    ..+.+++|.|....|.+|..|..+.+|.
T Consensus       150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~----~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHT----GEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcc----cceEEEEEcCCCcEEEeccccCceEEEe
Confidence            333  11222222211101122233444433321 1223344445554    4899999999999999999999988876


Q ss_pred             cCCCCC
Q 040274          222 PRSSEP  227 (359)
Q Consensus       222 ~gs~~~  227 (359)
                      -|...+
T Consensus       226 igg~~g  231 (404)
T KOG1409|consen  226 IGGRKG  231 (404)
T ss_pred             ccCCcc
Confidence            665443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.97  E-value=0.00067  Score=68.85  Aligned_cols=147  Identities=14%  Similarity=0.200  Sum_probs=92.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeC----CCCcce-------------------EEeecCCC---------------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKP----TTSALL-------------------IKMLYHQG---------------  110 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~----~~~~~~-------------------~~~~~h~~---------------  110 (359)
                      .|.+++||||..+++..+.++++.+-+-    -..+++                   ..|.|..+               
T Consensus       111 GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~  190 (1265)
T KOG1920|consen  111 GISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE  190 (1265)
T ss_pred             ceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence            8999999999999999888888766542    111111                   12221111               


Q ss_pred             ------CeEEEEEecCCCEEEEec----CC-CeEEEEEcCCCeeeEee----cCCceeEEEcCCC-cEEEE----cCCcE
Q 040274          111 ------PVSALAFHPNGHLMATTG----KE-CKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG-LLAVG----TGSFA  170 (359)
Q Consensus       111 ------~v~~l~~~p~g~~l~s~~----~d-~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g-l~~~~----~d~~i  170 (359)
                            .=++++|--||.++|+..    .+ ..|+|||.. |. +...    .+--.+++|-|.| ++++-    +++.|
T Consensus       191 ~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  191 QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             chhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence                  124589999999998843    23 789999977 43 3333    2234789999999 44433    35679


Q ss_pred             EEEcCCCCCccc---cccccccCCCCcceeEEEEccCCCEEEE---EeCCCeEEEEEc
Q 040274          171 QILGDFSGSHNY---SRYMGNSMVKGYQIGKVSFRPYEDVLGI---GHSMGWSGILVP  222 (359)
Q Consensus       171 ~v~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~---g~~dg~~~i~~~  222 (359)
                      .+|. +++-..-   ...+...    ..|..++|+.+++.|++   ......+.+|..
T Consensus       269 vffE-rNGL~hg~f~l~~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  269 VFFE-RNGLRHGEFVLPFPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             EEEe-cCCccccccccCCcccc----cchheeeecCCCCceeeeecccccceEEEEEe
Confidence            9997 5542211   1122221    14899999999999998   334444666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.95  E-value=0.0014  Score=58.06  Aligned_cols=144  Identities=20%  Similarity=0.235  Sum_probs=95.7

Q ss_pred             eeEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCcceEEeecCCCCe--EEEEEecCCCEEEEecC-----CCeEEEEEcC-
Q 040274           70 TDLMRVNP-FNGVVSLGHSGGT-VTMWKPTTSALLIKMLYHQGPV--SALAFHPNGHLMATTGK-----ECKIKIWDLR-  139 (359)
Q Consensus        70 v~~l~~sp-~~~~l~tg~~dg~-v~lwd~~~~~~~~~~~~h~~~v--~~l~~~p~g~~l~s~~~-----d~~i~vwd~~-  139 (359)
                      .+.++.+| ....++.+-.-|+ ..+||+.+++....+....+.-  -.-.|+|||++|++.-.     .|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            46788889 5566777777774 7789999998777665433322  23679999999999754     4789999999 


Q ss_pred             CCeeeEeecCC---ceeEEEcCCC-cEEEEcCC-------------------cEEEEcCCCCCcccccccc-ccCCCCcc
Q 040274          140 KYEVLQTLTGH---AKTLDFSQKG-LLAVGTGS-------------------FAQILGDFSGSHNYSRYMG-NSMVKGYQ  195 (359)
Q Consensus       140 ~~~~~~~~~~~---v~~~~~s~~g-l~~~~~d~-------------------~i~v~d~~~~~~~~~~~~~-~~~~~~~~  195 (359)
                      +...+.+++.+   ...+.+.||| .+++..+|                   ++.+.|..++ ..+....- ... +...
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~-~~lS  164 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDL-HQLS  164 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccc-cccc
Confidence            67778888443   4778899999 55444433                   3444442222 33322111 001 2336


Q ss_pred             eeEEEEccCCCEEEEEeCCC
Q 040274          196 IGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       196 v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |..+++.++|..++..-..|
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             eeeEEecCCCcEEEEEecCC
Confidence            99999999998887766665

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.94  E-value=0.00052  Score=66.23  Aligned_cols=160  Identities=11%  Similarity=-0.016  Sum_probs=98.8

Q ss_pred             eEEEECCCCCEEEEecc------ce---------eEEEE--------cCCCCEEEEEeCCCeEEEEeCCC----C-cceE
Q 040274           52 ILWILPSSGRYMAVAGR------RT---------DLMRV--------NPFNGVVSLGHSGGTVTMWKPTT----S-ALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------~v---------~~l~~--------sp~~~~l~tg~~dg~v~lwd~~~----~-~~~~  103 (359)
                      ..++++|||.++.+.+.      .+         ..+.|        .++|++...  .++.|.+.|..+    + ..+.
T Consensus       238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~  315 (635)
T PRK02888        238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR  315 (635)
T ss_pred             ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE
Confidence            46778899999987752      11         22233        335555554  256899999988    3 3344


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCee------------eEee--cCCceeEEEcCCC--cEEEEc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEV------------LQTL--TGHAKTLDFSQKG--LLAVGT  166 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~------------~~~~--~~~v~~~~~s~~g--l~~~~~  166 (359)
                      .+. -....+.+.++|||+++++++ .+.+|.|.|+.+.+.            +...  .......+|+++|  +.+.--
T Consensus       316 yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~  394 (635)
T PRK02888        316 YVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL  394 (635)
T ss_pred             EEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence            443 355568999999999977665 589999999987542            2222  1123567899998  666667


Q ss_pred             CCcEEEEcCCCC-----C----ccccccccccCCCCc--ceeEEEEccCCCEEEEEeCCC
Q 040274          167 GSFAQILGDFSG-----S----HNYSRYMGNSMVKGY--QIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       167 d~~i~v~d~~~~-----~----~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |..|..||+...     +    ..+..+.-|-. ++.  ....=.-.|||+||++...-.
T Consensus       395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~-pgh~~~~~g~t~~~dgk~l~~~nk~s  453 (635)
T PRK02888        395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ-PGHNHASMGETKEADGKWLVSLNKFS  453 (635)
T ss_pred             cceeEEEehHHHHHHhccccCCcceecccCCCc-cceeeecCCCcCCCCCCEEEEccccc
Confidence            899999996541     1    12222222211 111  111223368999998876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00012  Score=65.68  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .|..|+|||.+. ++..++.+..|.|.|+.+...+..+..| ..+++++|+-|. ++++.|...|.|.+||++..+
T Consensus       195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            799999999665 7889999999999999999888888887 789999998865 457777789999999999643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.87  E-value=0.00058  Score=59.16  Aligned_cols=138  Identities=18%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             CCCeEEEEeCCCCcceEEeecCCCCeEEEE--EecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-c
Q 040274           87 SGGTVTMWKPTTSALLIKMLYHQGPVSALA--FHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-L  161 (359)
Q Consensus        87 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~--~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l  161 (359)
                      .+|+|..||+.+|+.+....... ......  ..+++..+++++.++.|+.||..+|+.+..+  .+.+.......++ +
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV   79 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence            36899999999999888875411 111122  2335667778789999999999999988777  3333222233344 7


Q ss_pred             EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          162 LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       162 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +.++.++.|..+|..++............ ............++..++++..++.+..+...+|.
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            77778889999996666433331222110 00012223333348888888889988888866554

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0007  Score=64.02  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      ....|.+||+|.++++ +.||.-.||.........     .+.-..++|.+.+ .+|+-...++|.++.--.......+.
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence            6789999999999888 457787788743332211     2334678898855 46666668889997332333333442


Q ss_pred             C--CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          149 G--HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       149 ~--~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      -  .+..+-.   | ++....++.|.+||+.+. ..+..+...      .|..+.|+++|.+++..+.+.+.
T Consensus       107 ~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~-~~i~~i~v~------~vk~V~Ws~~g~~val~t~~~i~  168 (443)
T PF04053_consen  107 LPFSVEKIFG---GNLLGVKSSDFICFYDWETG-KLIRRIDVS------AVKYVIWSDDGELVALVTKDSIY  168 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-------E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred             CCcccceEEc---CcEEEEECCCCEEEEEhhHc-ceeeEEecC------CCcEEEEECCCCEEEEEeCCeEE
Confidence            2  2333332   7 777777778999997554 444444332      58999999999999999887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.83  E-value=5.7e-05  Score=44.01  Aligned_cols=38  Identities=39%  Similarity=0.831  Sum_probs=33.9

Q ss_pred             cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274          100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus       100 ~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      .++..+..|...|+++.|++++.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.0005  Score=68.63  Aligned_cols=126  Identities=8%  Similarity=-0.021  Sum_probs=88.7

Q ss_pred             CCCeEEEEeCCCCcceEEeecCCCC-eEEEEEec-----CCCEEEEecCCCeEEEEEcCCCe--eeE----ee--cCCce
Q 040274           87 SGGTVTMWKPTTSALLIKMLYHQGP-VSALAFHP-----NGHLMATTGKECKIKIWDLRKYE--VLQ----TL--TGHAK  152 (359)
Q Consensus        87 ~dg~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~p-----~g~~l~s~~~d~~i~vwd~~~~~--~~~----~~--~~~v~  152 (359)
                      ....|+-.|+.+|+.+..+..|... |..++-+.     +..-.+.|-.+..|..||+|-..  ++.    .+  ....+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4567889999999999998877654 55544221     12335566778889999999632  332    11  22357


Q ss_pred             eEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          153 TLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       153 ~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      |++-+.+| ++.|+.+|.|++|| ..+......+++.    +.+|.+|..+.||+||+..+..-.+
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~l----G~pI~~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGL----GDPIIGIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCC----CCCeeEEEecCCCcEEEEeecceEE
Confidence            88889999 88888999999999 4443333344443    4599999999999999887766543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.80  E-value=0.0025  Score=55.07  Aligned_cols=138  Identities=14%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCC--cceEEeecCC---CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           73 MRVNPFNGVVSLGHSGGTVTMWKPTTS--ALLIKMLYHQ---GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        73 l~~sp~~~~l~tg~~dg~v~lwd~~~~--~~~~~~~~h~---~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      ++.+++|++||.. .|..|.|-..+..  .++.+...+.   ..=.-++|+||+.+||.+...|+|++||+-. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5667788777665 6777877765543  2333333222   2346799999999999999999999999874 333444


Q ss_pred             c----------CCceeEEEcCC------C--cEEEEcCCcEEEEcCCCC----Ccccc--ccccccCCCCcceeEEEEcc
Q 040274          148 T----------GHAKTLDFSQK------G--LLAVGTGSFAQILGDFSG----SHNYS--RYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       148 ~----------~~v~~~~~s~~------g--l~~~~~d~~i~v~d~~~~----~~~~~--~~~~~~~~~~~~v~~~~~sp  203 (359)
                      +          ..|..+.|.+-      .  +++....|.++-|-+..+    .....  .+..|   ....|.++.|+|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~---yp~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH---YPHGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc---CCCceeEEEEcC
Confidence            1          22445555331      1  777888887776654221    11111  11122   233699999999


Q ss_pred             CCCEEEEEeCCC
Q 040274          204 YEDVLGIGHSMG  215 (359)
Q Consensus       204 ~~~~l~~g~~dg  215 (359)
                      ..++|++|+...
T Consensus       158 ~h~LLlVgG~~~  169 (282)
T PF15492_consen  158 KHRLLLVGGCEQ  169 (282)
T ss_pred             CCCEEEEeccCC
Confidence            999888777543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.80  E-value=0.0017  Score=66.00  Aligned_cols=139  Identities=14%  Similarity=0.137  Sum_probs=93.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc----CCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL----RKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~----~~~~~~  144 (359)
                      .|.++.|.-+...|+.+..+|.|.+-|+.+.... ..-.-...|.+++|+||+..++..+.++++.+.+-    -.-+++
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            6888899888888999999999999998876432 22223567999999999999999988888777542    111111


Q ss_pred             -------------------Eeec------------------------CCceeEEEcCCC-cEEEE-----cC-CcEEEEc
Q 040274          145 -------------------QTLT------------------------GHAKTLDFSQKG-LLAVG-----TG-SFAQILG  174 (359)
Q Consensus       145 -------------------~~~~------------------------~~v~~~~~s~~g-l~~~~-----~d-~~i~v~d  174 (359)
                                         ..|.                        ++-++|+|-.|| +++++     .+ ..|+|||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                               1111                        122569999999 77764     35 7899999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                       +.+ .....-...    ...-.+++|-|.|..+++-..+
T Consensus       229 -rEg-~Lns~se~~----~~l~~~LsWkPsgs~iA~iq~~  262 (1265)
T KOG1920|consen  229 -REG-ALNSTSEPV----EGLQHSLSWKPSGSLIAAIQCK  262 (1265)
T ss_pred             -ccc-hhhcccCcc----cccccceeecCCCCeEeeeeec
Confidence             443 221111111    1245679999999998875543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=7.9e-05  Score=67.67  Aligned_cols=142  Identities=15%  Similarity=0.230  Sum_probs=104.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC--C-cceEEeecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeEee-----c
Q 040274           78 FNGVVSLGHSGGTVTMWKPTT--S-ALLIKMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQTL-----T  148 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~--~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~~~-----~  148 (359)
                      -..++.+++.||.+..|-...  + +.+..+.+|.+.|.+++.+-+|.++.|.+. |..++++|+.+...+..+     +
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            456899999999999998653  2 345567789999999999999999999777 999999999876554333     3


Q ss_pred             CCceeEEEcCCC---cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 GHAKTLDFSQKG---LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 ~~v~~~~~s~~g---l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +.+ ++..++..   +++++  .++.+.|+|-.........+...   |.++|.++.++|.++.+++....|.+.-|..-
T Consensus        99 g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl---H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen   99 GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL---HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc---ccCceEEEEeeccccceeeccccceeEeecCC
Confidence            332 22234432   55655  36899999954443233333222   56699999999999999999999988888754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=3.5e-05  Score=74.97  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             EEEEEecCCCEEEEecC----CCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcC-CcEEEEcCCCCCccccc
Q 040274          113 SALAFHPNGHLMATTGK----ECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTG-SFAQILGDFSGSHNYSR  184 (359)
Q Consensus       113 ~~l~~~p~g~~l~s~~~----d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d-~~i~v~d~~~~~~~~~~  184 (359)
                      +-.+|+|...+|++++-    .|.|.|| ..+|++-...  +-+++++||+|.. +++.++. |.+.+|...+. .....
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc-eeeee
Confidence            33578998888887763    4778887 4667765544  6678999999998 6666654 88999984333 33333


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ...|.    .+|..+.|||+|..|+++..-|.+.+|-
T Consensus        97 ~~th~----a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   97 VETHP----APIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             ccCCC----CCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            44444    4899999999999999999999888773

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.00047  Score=64.93  Aligned_cols=138  Identities=15%  Similarity=0.129  Sum_probs=87.3

Q ss_pred             ceeEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec-CCCe--EEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGH---SG-GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG-KECK--IKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~---~d-g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~--i~vwd~~~~  141 (359)
                      .+..-+|+|++..++..+   .. ..+.++++.++.....+. ..+.-...+|+|||+.|+.+. .||.  |+++|+...
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence            567778999888765543   22 469999999886554443 234445689999999876654 4554  777788876


Q ss_pred             eeeE--eecCCceeEEEcCCC--cEEEE-cCC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          142 EVLQ--TLTGHAKTLDFSQKG--LLAVG-TGS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       142 ~~~~--~~~~~v~~~~~s~~g--l~~~~-~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      ....  ...+.-+.-.|+|||  ++.++ ..|  .|.+++....  ....+.....    .-....|+|||++|+..+.
T Consensus       273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~----~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGG----GNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCC----CCcCccCCCCCCEEEEEec
Confidence            6332  114445678999999  44333 344  5566663322  2233322211    2237889999999988775

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00026  Score=67.82  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=78.7

Q ss_pred             EECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-----e
Q 040274           55 ILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK-----M  105 (359)
Q Consensus        55 ~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~-----~  105 (359)
                      +++..+.+|+.|+.                        .+..+..|++..++|.|+..|.|.++-++.+.+...     +
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            44566777777765                        456677788888999999999999998876433211     1


Q ss_pred             e-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-------CeeeEeecCCceeEEEcCCC
Q 040274          106 L-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-------YEVLQTLTGHAKTLDFSQKG  160 (359)
Q Consensus       106 ~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~v~~~~~s~~g  160 (359)
                      . .|...|++++|++++..+++|...|.|.+--+.+       -+.+.+..+.|..+++...-
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~  182 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSY  182 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccce
Confidence            1 3678899999999999999999999998877765       12333446778778776654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.72  E-value=0.0026  Score=47.35  Aligned_cols=96  Identities=10%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             eeEEEEcC-CC---CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           70 TDLMRVNP-FN---GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        70 v~~l~~sp-~~---~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      |++|++.. ++   +-|++|+.|..|++|+-.  ..+..+.. .+.|++++-... ..|+.+..+|+|-+|+-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            66777755 33   579999999999999844  45555543 567888877665 579999999999999863  2233


Q ss_pred             ee--cCCceeEEE---cCCC---cEEEEcCCcEE
Q 040274          146 TL--TGHAKTLDF---SQKG---LLAVGTGSFAQ  171 (359)
Q Consensus       146 ~~--~~~v~~~~~---s~~g---l~~~~~d~~i~  171 (359)
                      .+  ...++++++   ..+|   ++++-.+|.|.
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33  334555544   3345   77776777664

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.71  E-value=0.00091  Score=65.68  Aligned_cols=144  Identities=10%  Similarity=0.044  Sum_probs=83.5

Q ss_pred             ceeEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-----------
Q 040274           69 RTDLMRVNPFNGVVSLGH------SGG--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-----------  129 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~------~dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-----------  129 (359)
                      .+...+++|+|..++...      .|.  .|.+++.. +.....+.+  ...+...|+|+|..+++...           
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            577889999999877665      243  45555542 222222223  23788999999887766642           


Q ss_pred             -CCeEEEEEcCCCeeeEeecCCceeEEEcCCC-cEEEEcCCcEEEEcC--CCCCccccc---c-ccccCCCCcceeEEEE
Q 040274          130 -ECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG-LLAVGTGSFAQILGD--FSGSHNYSR---Y-MGNSMVKGYQIGKVSF  201 (359)
Q Consensus       130 -d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~--~~~~~~~~~---~-~~~~~~~~~~v~~~~~  201 (359)
                       .+.+.+.++..+.....+.+.|..+.||||| .++...++.|++--+  ...+. ...   . ....  .+..+.++.|
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~--l~~~~~~l~W  504 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG--LGDTAVSLDW  504 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc--cCCccccceE
Confidence             2345555665555433456679999999999 444334677776221  12222 111   0 1111  1223688999


Q ss_pred             ccCCCEEEEEeCCCeEEE
Q 040274          202 RPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i  219 (359)
                      .+++.++ ++..++...+
T Consensus       505 ~~~~~L~-V~~~~~~~~v  521 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPV  521 (591)
T ss_pred             ecCCEEE-EEecCCCCce
Confidence            9999855 5554443333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0026  Score=62.54  Aligned_cols=156  Identities=12%  Similarity=0.057  Sum_probs=97.5

Q ss_pred             EECCCCCEEEEecc----------------------c-eeEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC------c
Q 040274           55 ILPSSGRYMAVAGR----------------------R-TDLMRVNPFNGVVSLGHSGG-----TVTMWKPTTS------A  100 (359)
Q Consensus        55 ~~spdg~~l~~~~~----------------------~-v~~l~~sp~~~~l~tg~~dg-----~v~lwd~~~~------~  100 (359)
                      +|++++..++.|+.                      . |..+-...+..+|++.+.|+     .|++|+++..      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            56777777777765                      2 22222222335677766543     5899997632      2


Q ss_pred             ceE--Eeec-----CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC----Ce-eeEee--cCCceeEEEcCCC--cEEE
Q 040274          101 LLI--KMLY-----HQGPVSALAFHPNGHLMATTGKECKIKIWDLRK----YE-VLQTL--TGHAKTLDFSQKG--LLAV  164 (359)
Q Consensus       101 ~~~--~~~~-----h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~----~~-~~~~~--~~~v~~~~~s~~g--l~~~  164 (359)
                      ++.  .+..     ...++.+++++.+-..+|+|-.+|.|..+.-+-    +. .....  .++|+.+.+..++  .+.+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            331  1222     356789999999999999999999999984321    11 11111  5689999999998  4566


Q ss_pred             EcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          165 GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       165 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .+...|.+|.+... .+......+   +|..+.|..|++....+++++..
T Consensus       190 ~Tt~~V~~y~l~gr-~p~~~~ld~---~G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGR-TPSLKVLDN---NGISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             EecceeEEEEecCC-Ccceeeecc---CCccceeeecCCCCccEEEecCc
Confidence            66778999986533 222222222   55588888888766544444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.68  E-value=0.003  Score=62.14  Aligned_cols=161  Identities=16%  Similarity=0.062  Sum_probs=94.6

Q ss_pred             eEEEECCCCCEEEEec-------c---------------------ceeEEEEcCCCCEEEEEeCC------------CeE
Q 040274           52 ILWILPSSGRYMAVAG-------R---------------------RTDLMRVNPFNGVVSLGHSG------------GTV   91 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~-------~---------------------~v~~l~~sp~~~~l~tg~~d------------g~v   91 (359)
                      .+.++||||+.+++..       .                     ..+.-.|+|+|..|.+.+..            +.+
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql  432 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL  432 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence            5777888888776543       1                     45678899998877776532            233


Q ss_pred             EEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEE---EEcCCCee-e---Eee----cCCceeEEEcCCC
Q 040274           92 TMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI---WDLRKYEV-L---QTL----TGHAKTLDFSQKG  160 (359)
Q Consensus        92 ~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~v---wd~~~~~~-~---~~~----~~~v~~~~~s~~g  160 (359)
                      .+.++..+....   ...+.|..+.|+|||..++... ++.|++   -....|.. +   ..+    ...+.++.|.+++
T Consensus       433 ~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~  508 (591)
T PRK13616        433 ARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD  508 (591)
T ss_pred             EEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence            333444333222   2256799999999999887765 477777   33333431 1   112    2346889999999


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                       |+.+..++...+|.+.-.+.....+....  ....+.+++=++.  .|+++..+|.+.+-
T Consensus       509 ~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~--~iyv~~~~g~~~l~  565 (591)
T PRK13616        509 SLVVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPS--TVYVTDARAVLQLP  565 (591)
T ss_pred             EEEEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCc--eEEEEcCCceEEec
Confidence             66655554444554333333322222221  2235777776653  56667777754443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.64  E-value=0.0012  Score=61.63  Aligned_cols=131  Identities=15%  Similarity=-0.003  Sum_probs=83.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CC-ceeE
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GH-AKTL  154 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~-v~~~  154 (359)
                      +..+++++.+|.+..||+.+++.+..... . ....+.  .++..++.++.||.|..+|..+++.+..+.   +. ..+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            45777888899999999999987766542 1 112222  245678888899999999999998876552   21 2333


Q ss_pred             EEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          155 DFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       155 ~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ... ++ +++++.+|.|+++|..++ +....+..+..   ....+..+. + +.|++++.||.+..|
T Consensus       317 ~i~-g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~---~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       317 AVV-GGYLVVGDFEGYLHWLSREDG-SFVARLKTDGS---GIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEE-CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCC---ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            332 33 778888999999995554 44444443321   011222222 3 458888888876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.62  E-value=0.003  Score=61.17  Aligned_cols=162  Identities=9%  Similarity=-0.004  Sum_probs=93.9

Q ss_pred             CCCCEEEEeccceeEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec--------
Q 040274           58 SSGRYMAVAGRRTDLMRVNPFNGVVSL-GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG--------  128 (359)
Q Consensus        58 pdg~~l~~~~~~v~~l~~sp~~~~l~t-g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~--------  128 (359)
                      |+-.|++.++.  ..+-++|||..+.. .-..+.+.+.|..+.+....+.-.. ....+.++|+|.++++++        
T Consensus       185 p~t~yv~~~~e--~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~t  261 (635)
T PRK02888        185 PRTGYVFCNGE--FRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVT  261 (635)
T ss_pred             CCccEEEeCcc--cccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcc
Confidence            56666665543  33344556654432 2234566666766655554443212 234456666666655543        


Q ss_pred             --------------------------------CCCeEEEEEcCC-----CeeeEee--cCCceeEEEcCCC---cEEEEc
Q 040274          129 --------------------------------KECKIKIWDLRK-----YEVLQTL--TGHAKTLDFSQKG---LLAVGT  166 (359)
Q Consensus       129 --------------------------------~d~~i~vwd~~~-----~~~~~~~--~~~v~~~~~s~~g---l~~~~~  166 (359)
                                                      .++.|.+.|..+     ...+..+  ...+..+.+||||   ++++..
T Consensus       262 l~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl  341 (635)
T PRK02888        262 LAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL  341 (635)
T ss_pred             eeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC
Confidence                                            235688888887     3455555  4457899999999   344445


Q ss_pred             CCcEEEEcCCCCCccc-------cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          167 GSFAQILGDFSGSHNY-------SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +++|.|+|+.......       ..+..... -+.......|.++|....+-.-|..+..|...
T Consensus       342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            7999999976532211       11111100 12245567899998877777777777666543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.62  E-value=0.004  Score=46.34  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             eEEEEEec---CC-CEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccc
Q 040274          112 VSALAFHP---NG-HLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       112 v~~l~~~p---~g-~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      |+++++..   +| +.|+.|+.|..|++|+-.  ..+.++  .+.+++++-...+ ++.+-.+|+|-+|+-..  .....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeee
Confidence            56777654   33 569999999999999765  556666  5668888888778 88888899999998321  22222


Q ss_pred             cccccCCCCcceeEEEEccC---C-CEEEEEeCCCeEE
Q 040274          185 YMGNSMVKGYQIGKVSFRPY---E-DVLGIGHSMGWSG  218 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~---~-~~l~~g~~dg~~~  218 (359)
                      -..+      .++++.+..-   | ..|++|-.+|.+.
T Consensus        78 KSK~------~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KSKN------QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccCC------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            1222      4666655542   2 3688888888664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.60  E-value=0.0026  Score=59.43  Aligned_cols=143  Identities=13%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CCceeEE
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHAKTLD  155 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~v~~~~  155 (359)
                      .+..+++++.+|.|..+|..+|+.+..+........++..  ++..++.++.++.++.||..+|+.+....  +.+.+.-
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3668888989999999999999988776644432223332  46678888899999999999999877662  3222111


Q ss_pred             EcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCC-cceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          156 FSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKG-YQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       156 ~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ...++ ++.++.++.|..||..++. ..-.+........ ....+...  .+..+++++.+|.+..+...++
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTG  210 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence            11234 6667778999999966553 2222111100000 00011111  1246677777777666655444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00055  Score=65.71  Aligned_cols=113  Identities=11%  Similarity=0.022  Sum_probs=79.0

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE-ee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-TL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~-~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      ...|.--+++..+.+++.|+..|.+++|+-..+.... ..   .+.+..++.|++.  +++++..|.|.+|.+.......
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3445555667788999999999999999977665422 22   2335667778887  4455566888888765543333


Q ss_pred             cccccccC-CCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          183 SRYMGNSM-VKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       183 ~~~~~~~~-~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..|..+.. .|+..|++++|++++..+++|...|.+....
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence            33433322 1566899999999999999999999876643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0029  Score=62.24  Aligned_cols=130  Identities=18%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC-eEEEEEecCCCEEEEecCCC-----eEEEEEcCC------C
Q 040274           74 RVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP-VSALAFHPNGHLMATTGKEC-----KIKIWDLRK------Y  141 (359)
Q Consensus        74 ~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~p~g~~l~s~~~d~-----~i~vwd~~~------~  141 (359)
                      +|++.+..++.|+.+|.|.+++-. -+.+..|.++... |..+....+.++|++.+.|+     .|++||+..      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            367888999999999999887633 3444677777666 55555444557888887764     489999864      2


Q ss_pred             eeeEee----------cCCceeEEEcCCC-cEEEE-cCCcEEEEcC--CCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          142 EVLQTL----------TGHAKTLDFSQKG-LLAVG-TGSFAQILGD--FSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       142 ~~~~~~----------~~~v~~~~~s~~g-l~~~~-~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      .++..+          +.++++++.|.+- .+++| .+|.|.++.-  ... ........|.  ...+|+.+.|..++..
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-rgsr~~~~~~--~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-RGSRQDYSHR--GKEPITGLALRSDGKS  185 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-cccceeeecc--CCCCceeeEEecCCce
Confidence            334222          2346888888887 55555 4678877751  111 1112222332  3458999999999877

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=4.5e-05  Score=74.60  Aligned_cols=127  Identities=15%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec----CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY----HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~----h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      ...++.|+.....-+.|.....+.+||+.|+.++.++..    ..-.-+++.|+|+..+++-   ||  .+||++..+.+
T Consensus      1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAI 1260 (1516)
T ss_pred             ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHH
Confidence            344455544333333344344578888888877766432    2223477889998887753   44  58999998888


Q ss_pred             EeecC-Cc-eeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          145 QTLTG-HA-KTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       145 ~~~~~-~v-~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      +.|.. .+ ..-.|+|+|  ++.-+     .|||+++- ..+...+..      .-+.+.|+..|++++..-
T Consensus      1261 h~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF-~lLh~VP~L------dqc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1261 HRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTF-KLLHSVPSL------DQCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             hhhhhheecccccccCCCceEEeec-----hhhhhHHH-HHHhcCccc------cceEEEeccCccchhhhh
Confidence            88832 11 234689999  33333     58997654 333333332      457788999998776443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.027  Score=52.65  Aligned_cols=146  Identities=14%  Similarity=0.198  Sum_probs=98.7

Q ss_pred             ceeEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHS---GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~---dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~~  144 (359)
                      ....++++|++..++.+..   +++|.+.|..+...+........+ ..++++|+|..++.+. .++.|.+.|.......
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            4567889999987777665   689999999988887775543445 8899999999766555 7889999997766555


Q ss_pred             E-e----e--cCCceeEEEcCCC---cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          145 Q-T----L--TGHAKTLDFSQKG---LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       145 ~-~----~--~~~v~~~~~s~~g---l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      . .    +  ......+.++|+|   +++...+  +.+...|.....-....+...   .. ....+.++|+|.++.+..
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~---~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG---SG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc---cC-CCCceeECCCCCEEEEEe
Confidence            3 1    1  2234788999999   3333333  578888855442111112221   11 356688999999998886


Q ss_pred             CC-CeEEE
Q 040274          213 SM-GWSGI  219 (359)
Q Consensus       213 ~d-g~~~i  219 (359)
                      .. +.+.+
T Consensus       272 ~~~~~V~v  279 (381)
T COG3391         272 SQGGTVSV  279 (381)
T ss_pred             cCCCeEEE
Confidence            65 44444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.52  E-value=0.0013  Score=64.93  Aligned_cols=97  Identities=11%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEE
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDF  156 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~  156 (359)
                      ..++.|+....+..+|+++.+......-..+.|+-+.  .+++++.+|...|+|.+-|.++.+.++++..   .+.+++.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            3455565556677788888776665544444455554  4678999999999999999999999999954   4555554


Q ss_pred             cCCCcEEEEc---------CCcEEEEcCCCC
Q 040274          157 SQKGLLAVGT---------GSFAQILGDFSG  178 (359)
Q Consensus       157 s~~gl~~~~~---------d~~i~v~d~~~~  178 (359)
                      ..+-+++||.         |..|.|||++.-
T Consensus       226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             cCCeEEEeecccccccccccchhhhhhhhhh
Confidence            4333888875         457889997654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0028  Score=59.18  Aligned_cols=132  Identities=9%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCE--E-----EEecCCCeEEEEEcCCC-e-eeEeec----
Q 040274           82 VSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL--M-----ATTGKECKIKIWDLRKY-E-VLQTLT----  148 (359)
Q Consensus        82 l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~--l-----~s~~~d~~i~vwd~~~~-~-~~~~~~----  148 (359)
                      |.++.....++-.|+..|+.+..+.-|.. |+-+.+.|+...  |     +.|-.|..|+-||+|-. . .+..-.    
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            33444555688888999998888877666 777888886432  2     23456788999999842 2 111111    


Q ss_pred             ---CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          149 ---GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       149 ---~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                         ..-.|++-..+| ++++|.+|.|++|| +.+......+++.    +.+|..+..+.+|.+|+..+..-.+-|
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd-ri~~~AKTAlPgL----G~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYD-RIGRRAKTALPGL----GDAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeeh-hhhhhhhhccccc----CCceeeEEeeccCcEEEEecccEEEEE
Confidence               224677777888 88899999999999 5554445555554    348999999999999987776654433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.47  E-value=0.018  Score=49.36  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=71.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCc-eeE
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHA-KTL  154 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v-~~~  154 (359)
                      -|.+++.|+.+|.+++.+..+|.....+..-..--......+++.++..++.|++.+..|+++..++...  .+.+ .+.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            3668999999999999999999888887653332234556789999999999999999999998888776  3333 344


Q ss_pred             EEcC-CC-cEEEEcCCcEEEE
Q 040274          155 DFSQ-KG-LLAVGTGSFAQIL  173 (359)
Q Consensus       155 ~~s~-~g-l~~~~~d~~i~v~  173 (359)
                      ++.| ++ ++++...|.+.-.
T Consensus       142 ~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             eecCCCceEEEEeccceEEEE
Confidence            5555 45 6666666655443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.00034  Score=65.18  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=77.7

Q ss_pred             eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-------CeeeEee---cCCceeEEEcCCCcEEEEcCCcEE
Q 040274          102 LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-------YEVLQTL---TGHAKTLDFSQKGLLAVGTGSFAQ  171 (359)
Q Consensus       102 ~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-------~~~~~~~---~~~v~~~~~s~~gl~~~~~d~~i~  171 (359)
                      +..|.+|...|..++--.+.+.+++++.|.+|++|.++.       ..+..++   ..+|.++.|-.+.-..++.|+.|+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            456779999888887777888999999999999999874       2355565   456888888777645677899999


Q ss_pred             EEcCCCCCcccc-ccccccCCCCcceeEEEEcc--CCCEEEEE-eCCCeEEEEEcCCCC
Q 040274          172 ILGDFSGSHNYS-RYMGNSMVKGYQIGKVSFRP--YEDVLGIG-HSMGWSGILVPRSSE  226 (359)
Q Consensus       172 v~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~g-~~dg~~~i~~~gs~~  226 (359)
                      +||...+ .... ......  ++ .+..+..-|  +..++..| +...++.++..-+.+
T Consensus       808 lWDPFig-r~Laq~~dapk--~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce  862 (1034)
T KOG4190|consen  808 LWDPFIG-RLLAQMEDAPK--EG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE  862 (1034)
T ss_pred             eeccccc-chhHhhhcCcc--cC-CCceeEecccCcchheeeeccchhhheeeeccccc
Confidence            9996554 3333 222211  11 233333333  33334333 456666666554444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.016  Score=53.68  Aligned_cols=60  Identities=10%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cC----------------CCCeEEEEEecCCCEEEEecC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YH----------------QGPVSALAFHPNGHLMATTGK  129 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h----------------~~~v~~l~~~p~g~~l~s~~~  129 (359)
                      .+....|||+|..++... ++.|.+++..++....... +-                -+.-.++-|||||++|+....
T Consensus        44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            588899999999999886 5789999987774332211 20                122366889999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.42  E-value=0.02  Score=49.85  Aligned_cols=184  Identities=14%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecC-CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe----
Q 040274           69 RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYH-QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE----  142 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~----  142 (359)
                      .++.|+|+|++. ++++....+.|..++.. |+.+..+.-. .+..-++++..++.++++.-.++.+.++++....    
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~  101 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD  101 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence            589999999755 56666677888888864 7777776532 4667889998888888877779999999984321    


Q ss_pred             --eeEee----c----CCceeEEEcCCC--cEEEEcCCcEEEEcCCC--CCcccc-----ccccccCCCCcceeEEEEcc
Q 040274          143 --VLQTL----T----GHAKTLDFSQKG--LLAVGTGSFAQILGDFS--GSHNYS-----RYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       143 --~~~~~----~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~--~~~~~~-----~~~~~~~~~~~~v~~~~~sp  203 (359)
                        ....+    .    ...-.++|+|.+  ++++-...-..||.+..  ......     .+..... ....+.++.|+|
T Consensus       102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~S~l~~~p  180 (248)
T PF06977_consen  102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL-FVRDLSGLSYDP  180 (248)
T ss_dssp             EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEET
T ss_pred             hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc-eeccccceEEcC
Confidence              12222    1    125789999986  66666666556665432  111111     1110111 223588999999


Q ss_pred             CCCEEE-EEeCCCeEEEEEcCCCCCceeeeccCCCCChhhhhhHHHHHhhhc-cCCCeeeeCCCC
Q 040274          204 YEDVLG-IGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDK-LLLETIMLNPSK  266 (359)
Q Consensus       204 ~~~~l~-~g~~dg~~~i~~~gs~~~~~~~~~~~~~~~~~~~~e~ev~~ll~~-~~~~~i~~~~~~  266 (359)
                      ....|+ ....+..+-++. ..|. .+..+......          +.|... -+|+.|++|++.
T Consensus       181 ~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~----------~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  181 RTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGF----------HGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             TTTEEEEEETTTTEEEEE--TT---EEEEEE-STTG----------GG-SS---SEEEEEE-TT-
T ss_pred             CCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcc----------cCcccccCCccEEEECCCC
Confidence            765554 444455444443 3232 23444432211          111111 268999999873

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.40  E-value=0.014  Score=50.37  Aligned_cols=141  Identities=16%  Similarity=0.066  Sum_probs=87.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEe-ecCC---CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCCc--
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKM-LYHQ---GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA--  151 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~-~~h~---~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~v--  151 (359)
                      .+..+++++.++.|..+|..+|+.+..+ ....   .....+....++..++.+..++.|..+|+.+|+.+..+....  
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            3456777778889999999999998884 3321   112223333347788888889999999999999887772211  


Q ss_pred             -----------eeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          152 -----------KTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       152 -----------~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                                 ..-....++ ++.++.++.+..+|+.++.... ... ..     .+.. ...+++..|++++.++.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~-----~~~~-~~~~~~~~l~~~~~~~~l~~  226 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW-SKP-IS-----GIYS-LPSVDGGTLYVTSSDGRLYA  226 (238)
T ss_dssp             SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE-EEC-SS------ECE-CEECCCTEEEEEETTTEEEE
T ss_pred             CCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEE-Eec-CC-----CccC-CceeeCCEEEEEeCCCEEEE
Confidence                       112222345 5566666654444866553221 111 11     2222 24568888888888898888


Q ss_pred             EEcCCCC
Q 040274          220 LVPRSSE  226 (359)
Q Consensus       220 ~~~gs~~  226 (359)
                      |...++.
T Consensus       227 ~d~~tG~  233 (238)
T PF13360_consen  227 LDLKTGK  233 (238)
T ss_dssp             EETTTTE
T ss_pred             EECCCCC
Confidence            8876654

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.35  E-value=7.8e-05  Score=70.58  Aligned_cols=146  Identities=13%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             ceeEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcc--eEEeecCCCCeEEEEEec-CCCEEEEec----CCCeEEEEEcC
Q 040274           69 RTDLMRVNPFN--GVVSLGHSGGTVTMWKPTTSAL--LIKMLYHQGPVSALAFHP-NGHLMATTG----KECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~--~~l~tg~~dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~p-~g~~l~s~~----~d~~i~vwd~~  139 (359)
                      .+.|++++.+.  .++++|..+|.|-+-..+...-  -....+|..++++++|++ |.+.||.|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            46677766543  4788899999999988764422  223457888999999998 555566553    25679999998


Q ss_pred             CC--eeeEee------cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEE
Q 040274          140 KY--EVLQTL------TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVL  208 (359)
Q Consensus       140 ~~--~~~~~~------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l  208 (359)
                      ++  .+..+.      .....+++|-.+.  +++|.....+.++|++..-.....+.+.      .+..+...| .++++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk------~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK------YVQGITVDPFSPNYF  211 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh------hcccceecCCCCCce
Confidence            75  222111      1235688898766  6666677899999976443333333332      466677788 55666


Q ss_pred             EEEeCCCeEEEEE
Q 040274          209 GIGHSMGWSGILV  221 (359)
Q Consensus       209 ~~g~~dg~~~i~~  221 (359)
                      ++-+ ||.+.+|.
T Consensus       212 cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  212 CSNS-DGDIAIWD  223 (783)
T ss_pred             eccc-cCceeecc
Confidence            6555 88877765

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.028  Score=48.82  Aligned_cols=154  Identities=17%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             CCCCCEEEEecc-------------ceeEEEEcCCC-CEEEEEeCCCe-EEEEeCCCCcceEEeecCCCC--eEEEEEec
Q 040274           57 PSSGRYMAVAGR-------------RTDLMRVNPFN-GVVSLGHSGGT-VTMWKPTTSALLIKMLYHQGP--VSALAFHP  119 (359)
Q Consensus        57 spdg~~l~~~~~-------------~v~~l~~sp~~-~~l~tg~~dg~-v~lwd~~~~~~~~~~~~h~~~--v~~l~~~p  119 (359)
                      .+||++-+..-.             ..+.|+|+|.. .-++.+-.-|+ ..++|+++.+.+.++...++.  .-.=.|||
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~  123 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP  123 (366)
T ss_pred             ccCCceeEEEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC
Confidence            467776554433             78899999954 45777777775 678999888766655433221  12246899


Q ss_pred             CCCEEEEecCC-----CeEEEEEcCCC-eeeEeecCC---ceeEEEcCCC-cEEEEcCCcEEEE----------------
Q 040274          120 NGHLMATTGKE-----CKIKIWDLRKY-EVLQTLTGH---AKTLDFSQKG-LLAVGTGSFAQIL----------------  173 (359)
Q Consensus       120 ~g~~l~s~~~d-----~~i~vwd~~~~-~~~~~~~~~---v~~~~~s~~g-l~~~~~d~~i~v~----------------  173 (359)
                      ||.+|+..-.|     |.|-|||.+.+ +.+-.++.+   ...+.|.+|| ++++..+ -|...                
T Consensus       124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG-GIethpdfgR~~lNldsMePS  202 (366)
T COG3490         124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG-GIETHPDFGRTELNLDSMEPS  202 (366)
T ss_pred             CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC-ceecccccCccccchhhcCcc
Confidence            99999876554     78999999853 344455433   4788999999 5544433 23333                


Q ss_pred             ----cCCCCCccccccccccCC---CCcceeEEEEccCCCEEEEEeCCC
Q 040274          174 ----GDFSGSHNYSRYMGNSMV---KGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       174 ----d~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                          |..++ ..+   ..|..+   +.-.|..++..+||.+++.+-..|
T Consensus       203 lvlld~atG-~li---ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G  247 (366)
T COG3490         203 LVLLDAATG-NLI---EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG  247 (366)
T ss_pred             EEEEecccc-chh---hhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence                21111 111   112110   122588888888988777665554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.14  E-value=0.041  Score=48.32  Aligned_cols=144  Identities=13%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             ceeEEEEcCCCCEEEEEe---CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE-cCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGH---SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD-LRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~---~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd-~~~~~~~  144 (359)
                      .+.+.++++++..++...   ....+.++...  .....+. ....+...+|++++...+....+....++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578888999888776655   22345555433  3333322 233788899999988777766666666663 3333321


Q ss_pred             E-ee-----cCCceeEEEcCCC--cEEEE---cCCcEEEEcCCCCCcc-cc----ccccccCCCCcceeEEEEccCCCEE
Q 040274          145 Q-TL-----TGHAKTLDFSQKG--LLAVG---TGSFAQILGDFSGSHN-YS----RYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       145 ~-~~-----~~~v~~~~~s~~g--l~~~~---~d~~i~v~d~~~~~~~-~~----~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                      . ..     .+.|+.+.+||||  ++...   .++.|.|--+.....- ..    .+.... .....+..+.|.+++.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCEEE
Confidence            1 11     1279999999999  33333   2567766643322111 11    111000 023468999999999988


Q ss_pred             EEEeCCCe
Q 040274          209 GIGHSMGW  216 (359)
Q Consensus       209 ~~g~~dg~  216 (359)
                      +.+...+.
T Consensus       181 V~~~~~~~  188 (253)
T PF10647_consen  181 VLGRSAGG  188 (253)
T ss_pred             EEeCCCCC
Confidence            77766553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0069  Score=55.48  Aligned_cols=155  Identities=9%  Similarity=-0.039  Sum_probs=101.1

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEee--cCCCCeEEEEEecC-C--CEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKML--YHQGPVSALAFHPN-G--HLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~-g--~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .|.+++.+-++.++.|++. |..++++|+.+-..+.-+.  --.+.+.++. +|. .  ..-++.-.++.+.++|-....
T Consensus        55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~  133 (558)
T KOG0882|consen   55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDF  133 (558)
T ss_pred             HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCc
Confidence            6777888889989999777 9999999987654432222  1223222221 221 1  223334457899999987644


Q ss_pred             e-eEee----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc----c--------cccccccCCCCcceeEEEEcc
Q 040274          143 V-LQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN----Y--------SRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       143 ~-~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~----~--------~~~~~~~~~~~~~v~~~~~sp  203 (359)
                      + ..-+    ..+|..+.++|.+  .++....|.|.-|.....-+.    +        ..|....  ......++.|+|
T Consensus       134 ~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K--~Kt~pts~Efsp  211 (558)
T KOG0882|consen  134 CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK--AKTEPTSFEFSP  211 (558)
T ss_pred             CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc--cccCccceEEcc
Confidence            2 2222    4678999999988  666777899999985421000    0        0111111  223578999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCC
Q 040274          204 YEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       204 ~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +|..+.+-+.|..+++++.-+++
T Consensus       212 ~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  212 DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             ccCcccccCcccEEEEEEeccch
Confidence            99999999999999998887765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.08  E-value=0.18  Score=45.30  Aligned_cols=141  Identities=13%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc-CCCeeeEe-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL-RKYEVLQT-  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~-~~~~~~~~-  146 (359)
                      .+..+..+++|.++++++.-....-||.-...-...-......|.++.|+|++.+.+.+ ..|.|++=+. ........ 
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~  224 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEP  224 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccc
Confidence            67888889999988888665566678865433333333456789999999998876654 7788887762 22222111 


Q ss_pred             ---e--cC-CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          147 ---L--TG-HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       147 ---~--~~-~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                         +  .+ .+.+++|.+++ +.+++..|++.+=.  .+++.......-.. ....++.+.|.+...-++.|..
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~--DgGktW~~~~~~~~-~~~n~~~i~f~~~~~gf~lG~~  295 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVST--DGGKTWQKDRVGEN-VPSNLYRIVFVNPDKGFVLGQD  295 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEES--STTSS-EE-GGGTT-SSS---EEEEEETTEEEEE-ST
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEeCCccEEEeC--CCCccceECccccC-CCCceEEEEEcCCCceEEECCC
Confidence               1  12 26889999988 77788777665543  33344333322111 1225888899877666665543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.082  Score=49.44  Aligned_cols=150  Identities=13%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             eeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCeeeE
Q 040274           70 TDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        70 v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~~~~  145 (359)
                      -..++.++.+. .+++...+..|.+.|..+........... ....++++|++..+..+..   ++++.+.|..++..+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            34677888776 55555567899999988776666554322 4578999999987776655   6889999999888877


Q ss_pred             eec-C-CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC---CeE
Q 040274          146 TLT-G-HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM---GWS  217 (359)
Q Consensus       146 ~~~-~-~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d---g~~  217 (359)
                      +.+ + ....++++|+|   +++-..++.|.++|.... .............+.....+.++|+|..+.+....   +.+
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            762 2 24889999999   334445789999994333 22210000000022245778999999866655444   344


Q ss_pred             EEEE
Q 040274          218 GILV  221 (359)
Q Consensus       218 ~i~~  221 (359)
                      ..+.
T Consensus       234 ~~id  237 (381)
T COG3391         234 LKID  237 (381)
T ss_pred             EEEe
Confidence            4443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.05  E-value=0.03  Score=49.70  Aligned_cols=136  Identities=14%  Similarity=0.219  Sum_probs=83.8

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE-----------
Q 040274           77 PFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-----------  145 (359)
Q Consensus        77 p~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~-----------  145 (359)
                      ..++.|+.|..+| |.+|+.........+ .+...|..+...|+-+.|++-+ |+.++++|+.......           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            4678999998888 899998322222222 2344499999999877776664 4999999987644332           


Q ss_pred             ----eec--CCceeEE--EcCCC--cEEEEcCCcEEEEcCCCCCccc-cccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          146 ----TLT--GHAKTLD--FSQKG--LLAVGTGSFAQILGDFSGSHNY-SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       146 ----~~~--~~v~~~~--~s~~g--l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                          .+.  ..+..++  -...+  .+++.....|.+|......... ..+.....  ...+.++.|.  ++.|++|..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--p~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--PDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--CCCcEEEEEe--CCEEEEEeCC
Confidence                121  2233333  11233  6667777789988765432222 22222221  1368899998  6788888888


Q ss_pred             CeEEE
Q 040274          215 GWSGI  219 (359)
Q Consensus       215 g~~~i  219 (359)
                      ++..+
T Consensus       158 ~f~~i  162 (275)
T PF00780_consen  158 GFYLI  162 (275)
T ss_pred             ceEEE
Confidence            76544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.01  E-value=0.015  Score=56.93  Aligned_cols=106  Identities=14%  Similarity=0.331  Sum_probs=73.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEe--cCCCEEEEecCCCeEEEEEc-----C-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFH--PNGHLMATTGKECKIKIWDL-----R-  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~--p~g~~l~s~~~d~~i~vwd~-----~-  139 (359)
                      .++-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |+|..+++.|-.+.|.+|--     . 
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444444444444444445579999999876443322 457889999994  68999999999999999843     1 


Q ss_pred             ---CCeeeEee------cCCceeEEEcCCCcEEEEcCCcEEEEc
Q 040274          140 ---KYEVLQTL------TGHAKTLDFSQKGLLAVGTGSFAQILG  174 (359)
Q Consensus       140 ---~~~~~~~~------~~~v~~~~~s~~gl~~~~~d~~i~v~d  174 (359)
                         +..++..+      +.+|.+..|.++|.+.++.++.+.|||
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d  154 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD  154 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence               12334444      356899999999977777788999998

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.96  E-value=0.12  Score=48.78  Aligned_cols=48  Identities=10%  Similarity=0.430  Sum_probs=38.3

Q ss_pred             eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC
Q 040274           90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~  139 (359)
                      .|.+|+.. |..+.++....+.+.++.|+.+.. |++...||.+++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence            59999865 677777665558999999988654 5566799999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.12  Score=46.65  Aligned_cols=137  Identities=15%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             ceeEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC-CeEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHS-----------GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-CKIKIW  136 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-----------dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d-~~i~vw  136 (359)
                      ..+.+...|+|.+-++...           -|.|+.+|+ .+..+..+..|-..-++|+||||++.|+.+... +.|..|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            5667777888765554333           144555555 455555555656667899999999888777664 778888


Q ss_pred             EcCC--Ce---e--eEee---cCCceeEEEcCCC-cEEEE-cCC-cEEEEcCCCCCccccccccccCCCCcceeEEEEcc
Q 040274          137 DLRK--YE---V--LQTL---TGHAKTLDFSQKG-LLAVG-TGS-FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       137 d~~~--~~---~--~~~~---~~~v~~~~~s~~g-l~~~~-~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  203 (359)
                      ++..  +.   .  ...+   ++..-.++...+| +.++. .+| .|.+|+..  +.....+..+.    ..+++++|--
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~----~~~t~~~FgG  264 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPV----KRPTNPAFGG  264 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEEEECCC----CCCccceEeC
Confidence            7752  11   1  1111   3445667777888 55333 333 89999843  34554444432    2577777753


Q ss_pred             -CCCEEEEEe
Q 040274          204 -YEDVLGIGH  212 (359)
Q Consensus       204 -~~~~l~~g~  212 (359)
                       +.+.|.+.+
T Consensus       265 ~~~~~L~iTs  274 (307)
T COG3386         265 PDLNTLYITS  274 (307)
T ss_pred             CCcCEEEEEe
Confidence             445554433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.94  E-value=0.087  Score=45.89  Aligned_cols=157  Identities=9%  Similarity=0.018  Sum_probs=81.2

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---c---
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---L---  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---~---  101 (359)
                      ..|+|.|+...|++...                        ..-.+++..++.++++--.++.+.++++....   .   
T Consensus        25 SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~  104 (248)
T PF06977_consen   25 SGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD  104 (248)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred             cccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence            78899998666655444                        45666666666555555568888888874321   1   


Q ss_pred             eEEee-----cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC---CeeeEee-----------cCCceeEEEcCCC--
Q 040274          102 LIKML-----YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK---YEVLQTL-----------TGHAKTLDFSQKG--  160 (359)
Q Consensus       102 ~~~~~-----~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~---~~~~~~~-----------~~~v~~~~~s~~g--  160 (359)
                      ...+.     .+...+-.++|+|.+..|+.+-...-..+|.+..   ...+...           ...++++.++|..  
T Consensus       105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~  184 (248)
T PF06977_consen  105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGH  184 (248)
T ss_dssp             EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTE
T ss_pred             ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCe
Confidence            11121     2445689999999877777776665555555543   1111111           1236889999975  


Q ss_pred             c-EEEEcCCcEEEEcCCCCCccccccccccCC-----CCcceeEEEEccCCCEEEE
Q 040274          161 L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMV-----KGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       161 l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~  210 (359)
                      + +.+..+..|..+| ..+ .....+.-..+.     .-.+.-.|+|.++|++.++
T Consensus       185 lliLS~es~~l~~~d-~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  185 LLILSDESRLLLELD-RQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             EEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             EEEEECCCCeEEEEC-CCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            4 4444567788888 443 332222111100     1135788999999865444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.92  E-value=0.078  Score=48.32  Aligned_cols=139  Identities=17%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             CCEEEEEeC---------C-CeEEEEeCCCC----cceEEe--ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe
Q 040274           79 NGVVSLGHS---------G-GTVTMWKPTTS----ALLIKM--LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        79 ~~~l~tg~~---------d-g~v~lwd~~~~----~~~~~~--~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      ..+|++|..         . |.|.++++...    ..+..+  ....++|++++-. ++.++++.  .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcc
Confidence            457777653         2 88999999874    122222  2457889999876 44444443  3789999998766


Q ss_pred             -eeEe--ec--CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          143 -VLQT--LT--GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       143 -~~~~--~~--~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                       .+..  +.  ..++++....+-++++.....+.++...........+....  ....++++.|.++++.++++..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~--~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDY--QPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEES--S-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecC--CCccEEEEEEecCCcEEEEEcCCCeE
Confidence             3322  22  34566665544366666667777664222222222222211  23368999999777899999999988


Q ss_pred             EEEEc
Q 040274          218 GILVP  222 (359)
Q Consensus       218 ~i~~~  222 (359)
                      .++-.
T Consensus       197 ~~l~~  201 (321)
T PF03178_consen  197 FVLRY  201 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.88  E-value=0.15  Score=45.99  Aligned_cols=157  Identities=8%  Similarity=-0.006  Sum_probs=90.5

Q ss_pred             eeEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecCC-------CCeEEEEEecCCCEEEEecC--C
Q 040274           70 TDLMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYHQ-------GPVSALAFHPNGHLMATTGK--E  130 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h~-------~~v~~l~~~p~g~~l~s~~~--d  130 (359)
                      ...+..+|+++.+++++          ..-.|.+||..|-.+...+.-..       ...+.++++.||++++....  .
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            44566789988887654          23469999999987766543221       12244677888888776543  4


Q ss_pred             CeEEEEEcCCCeeeEeecCC--ceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCC-CCcceeEEEEccCCCE
Q 040274          131 CKIKIWDLRKYEVLQTLTGH--AKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMV-KGYQIGKVSFRPYEDV  207 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~~~~--v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~  207 (359)
                      ..|.|-|+...+.+.++.-+  ..-.-+.++++.+.|.||.+..+.+...++........... ....+..-.++..+..
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            56888999988888888433  22222233448888888888777655444333211110000 1112234455556666


Q ss_pred             EEEEeCCCeEEEEEcCCCC
Q 040274          208 LGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       208 l~~g~~dg~~~i~~~gs~~  226 (359)
                      ++.-+.+|.+.-..-+...
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSS
T ss_pred             EEEEecCCEEEEEeccCCc
Confidence            7777788877665544433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.86  E-value=0.034  Score=52.25  Aligned_cols=139  Identities=16%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCC-------CeEEEEEec--CCCEEEEecCCCeEEEEEcCCCeeeEeec-C
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQG-------PVSALAFHP--NGHLMATTGKECKIKIWDLRKYEVLQTLT-G  149 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-~  149 (359)
                      ..++.++.+|.+..+|+.+|+.+........       ....+..+|  .+..++.++.++.+..+|+.+|+.+.... +
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            3566777889999999998887665431110       011111122  24567777789999999999998776652 2


Q ss_pred             CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccc-ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          150 HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRY-MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       150 ~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ....+... ++ ++.++.++.+..+|..++......- ....     ...+...  .+..|++++.+|.+.++...+++
T Consensus       286 ~~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        286 SVNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-----LLTAPVL--YNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             CccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-----cccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            22223332 33 7777888999999965553222111 1111     1222222  35678889999988887766553

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.82  E-value=0.036  Score=51.83  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=70.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------------------------------------cceEEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-------------------------------------------ALLIKM  105 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-------------------------------------------~~~~~~  105 (359)
                      .|+.+.|+++..-|++|...|.|-||.....                                           .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            3677888887777888888887777643110                                           122233


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--c---------CCceeEEEc-----CCC-----cEEE
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--T---------GHAKTLDFS-----QKG-----LLAV  164 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~---------~~v~~~~~s-----~~g-----l~~~  164 (359)
                      ....++|++++.|.- -+++.|..+|.+.|.|+|....++.-  .         ..++++.|+     .|+     ++++
T Consensus        83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            345789999998754 48999999999999999988776653  1         236677775     233     6677


Q ss_pred             EcCCcEEEEcCC
Q 040274          165 GTGSFAQILGDF  176 (359)
Q Consensus       165 ~~d~~i~v~d~~  176 (359)
                      ...|.+.+|.+.
T Consensus       162 Tn~G~v~~fkIl  173 (395)
T PF08596_consen  162 TNSGNVLTFKIL  173 (395)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCCEEEEEEe
Confidence            778999999764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.80  E-value=0.03  Score=52.61  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC--CeE-----EEEEec--CCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG--PVS-----ALAFHP--NGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~-----~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .+..+++++.+|.|.-+|..+|+.+........  .+.     .+.-.|  ++..++.++.++.++.+|..+|+.+....
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            456788888899999999999988877643220  000     000111  34567778889999999999999887763


Q ss_pred             --CCce-eEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 040274          149 --GHAK-TLDFSQKG-LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       149 --~~v~-~~~~s~~g-l~~~~~d~~i~v~d~~~~~  179 (359)
                        +.+. +.... ++ ++.++.++.|..+|..++.
T Consensus       148 ~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~  181 (394)
T PRK11138        148 VAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGA  181 (394)
T ss_pred             CCCceecCCEEE-CCEEEEECCCCEEEEEEccCCC
Confidence              3222 12222 45 6666778889999966653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.79  E-value=0.0039  Score=38.89  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL  101 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~  101 (359)
                      .|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            5889999999999999999999999998 4544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.77  E-value=0.086  Score=48.41  Aligned_cols=157  Identities=13%  Similarity=0.068  Sum_probs=85.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      +.=+|.+||+.|+.++.                          ......++|++..++....+..|...|+.+.+....+
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            44467899998888766                          2334666787777776666678888899988765555


Q ss_pred             ecCCCCeEEEEE--ecCCCEEEEecC----------------------CCeEEEEEcCCCeeeEee--cCCceeEEEcCC
Q 040274          106 LYHQGPVSALAF--HPNGHLMATTGK----------------------ECKIKIWDLRKYEVLQTL--TGHAKTLDFSQK  159 (359)
Q Consensus       106 ~~h~~~v~~l~~--~p~g~~l~s~~~----------------------d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~  159 (359)
                      ....+.+-...|  +.++..++..-.                      .+.|..-|+.+|+....+  ...+.-+.|||.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            555665555555  446666544311                      134666678887764444  455788999998


Q ss_pred             C--cEEEEcCC-----cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE
Q 040274          160 G--LLAVGTGS-----FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       160 g--l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      .  +++-+..|     .-+||-+...+.....+..+.  .+..+..=-|.|||..|.-
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~--~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM--EGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC--CCcccccccccCCCCEEEE
Confidence            7  66655432     236676555545555554442  3446777789999987654

>smart00320 WD40 WD40 repeats

Probab=96.71  E-value=0.0031  Score=36.12  Aligned_cols=27  Identities=15%  Similarity=0.394  Sum_probs=25.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                      .|.++.|++.+.++++++.|+.|++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            689999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.70  E-value=0.21  Score=43.87  Aligned_cols=148  Identities=6%  Similarity=0.070  Sum_probs=92.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-  146 (359)
                      .++++.|+|+.+.|++..+.+.-.||=...|+.+.++.- .-...-++.|..+|.++++--.++.++++.+.....+.. 
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~  166 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISA  166 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEec
Confidence            789999999998888888777777777677888877652 122335677777888888877899999887765432211 


Q ss_pred             ----e--c---C---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc--ccccccC---CCCcceeEEEEccCCC-
Q 040274          147 ----L--T---G---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS--RYMGNSM---VKGYQIGKVSFRPYED-  206 (359)
Q Consensus       147 ----~--~---~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~---~~~~~v~~~~~sp~~~-  206 (359)
                          +  .   .   ..-.++|+|..  ++.+-.-+-+.||.+........  ....+..   ..-..|+++.|++..+ 
T Consensus       167 ~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~  246 (316)
T COG3204         167 KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNS  246 (316)
T ss_pred             cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCc
Confidence                1  1   1   13579999987  66666666666666433221111  1111110   0122578889997554 


Q ss_pred             EEEEEeCCCe
Q 040274          207 VLGIGHSMGW  216 (359)
Q Consensus       207 ~l~~g~~dg~  216 (359)
                      .|+.+.+++.
T Consensus       247 LLVLS~ESr~  256 (316)
T COG3204         247 LLVLSDESRR  256 (316)
T ss_pred             EEEEecCCce
Confidence            4555555553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.011  Score=56.41  Aligned_cols=90  Identities=21%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCce-eEEEcCCC-cEEEE-cCCcEEEEcCCCCCccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAK-TLDFSQKG-LLAVG-TGSFAQILGDFSGSHNY  182 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~-~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~  182 (359)
                      ...+.-+.|+|.-.++|++..+|.|-+..+. .+.+.+++   -.++ +++|.||| +++++ .||+|.+.|+..+....
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3456778999999999999999999988887 66777774   2355 99999999 66666 68999999987664444


Q ss_pred             cccccccCCCCcceeEEEEcc
Q 040274          183 SRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp  203 (359)
                      ......    ...|.++.|+|
T Consensus        99 ~~~~s~----e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSV----ETDISKGIWDR  115 (665)
T ss_pred             cccccc----ccchheeeccc
Confidence            322222    22677888864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.55  E-value=0.086  Score=50.43  Aligned_cols=141  Identities=12%  Similarity=0.072  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC----CCEEEEecCCCeEEEEEcCC--
Q 040274           69 RTDLMRVNPFNGVVSLGH--SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN----GHLMATTGKECKIKIWDLRK--  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~----g~~l~s~~~d~~i~vwd~~~--  140 (359)
                      +++.++|-...+.+.|.-  .+|.+.+=|.   ..    .+.-..|.+++|.|-    -.-|+..-....|.||.+..  
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            677777764444444432  3344433321   12    244556899999983    32455556778899998852  


Q ss_pred             ---CeeeEee----cC--C--ceeEEEcCCC-cEEEEcCCcEE-EEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          141 ---YEVLQTL----TG--H--AKTLDFSQKG-LLAVGTGSFAQ-ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       141 ---~~~~~~~----~~--~--v~~~~~s~~g-l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                         ++.+.+.    ..  +  ...+.|+|.. ++++-....+. ++++......+..-...    .+.|.|.+|.+||..
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDGQR  169 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcCCE
Confidence               2222222    11  2  3678999998 66655544443 44544333333222222    237999999999999


Q ss_pred             EEEEeCCCeE-EEE
Q 040274          208 LGIGHSMGWS-GIL  220 (359)
Q Consensus       208 l~~g~~dg~~-~i~  220 (359)
                      |+++-..... .||
T Consensus       170 LVVAvGSsLHSyiW  183 (671)
T PF15390_consen  170 LVVAVGSSLHSYIW  183 (671)
T ss_pred             EEEEeCCeEEEEEe
Confidence            8887766543 344

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.54  E-value=0.55  Score=42.16  Aligned_cols=113  Identities=19%  Similarity=0.389  Sum_probs=62.6

Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC--CeeeEee-cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRK--YEVLQTL-TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~--~~~~~~~-~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      -.+.+..+..+++|.++++++.-..+.-||.-.  ..+.... ...+.++.|+|++ +...+.++.|++=+.........
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence            346688888899999998887766667887642  3333333 4568999999999 77777888888776222111111


Q ss_pred             c-cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          184 R-YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       184 ~-~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      . ..... ..+..+..++|.+++...++|+...   ++++-.
T Consensus       223 ~~~~~~~-~~~~~~ld~a~~~~~~~wa~gg~G~---l~~S~D  260 (302)
T PF14870_consen  223 EPIIPIK-TNGYGILDLAYRPPNEIWAVGGSGT---LLVSTD  260 (302)
T ss_dssp             --B-TTS-S--S-EEEEEESSSS-EEEEESTT----EEEESS
T ss_pred             cccCCcc-cCceeeEEEEecCCCCEEEEeCCcc---EEEeCC
Confidence            1 11110 0233589999999988888777664   555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.53  E-value=0.16  Score=47.98  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             eEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC-----------CeEE
Q 040274           71 DLMRVNPFNGVVSLG-HSGG----TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-----------CKIK  134 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg-~~dg----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d-----------~~i~  134 (359)
                      ..+.+||+|++++.+ +..|    .|+++|+.+++.+........ ..++.|.+++..|+....+           ..|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            357889999988766 3444    599999999976654322111 2339999998887665432           2478


Q ss_pred             EEEcCCCe----eeEeecC--C-ceeEEEcCCC---cEEEEcC---CcEEEEcCCC
Q 040274          135 IWDLRKYE----VLQTLTG--H-AKTLDFSQKG---LLAVGTG---SFAQILGDFS  177 (359)
Q Consensus       135 vwd~~~~~----~~~~~~~--~-v~~~~~s~~g---l~~~~~d---~~i~v~d~~~  177 (359)
                      .|.+.+..    ++..-..  . ...+..++++   ++.....   ..+.+.|+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            88887653    2322222  2 4578889999   3333332   3577777544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.51  E-value=0.0082  Score=37.45  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      ...|.+++|+|...++|.++.||.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            456899999999999999999999999998 45443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.51  E-value=0.13  Score=46.76  Aligned_cols=146  Identities=14%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-CeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-LLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~~  145 (359)
                      +|++|+--  +..|+++. ++.|.+|++.... ....-. .....++++...  +++++.|+....+.++..+. +..+.
T Consensus        90 ~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~  164 (321)
T PF03178_consen   90 PVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLI  164 (321)
T ss_dssp             -EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred             cceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEE
Confidence            67777655  33444443 4789999998776 333222 223355555554  56999998888888775443 33233


Q ss_pred             ee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCC------Cc-cccc-cccccCCCCcceeEE---EEccC--C
Q 040274          146 TL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSG------SH-NYSR-YMGNSMVKGYQIGKV---SFRPY--E  205 (359)
Q Consensus       146 ~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~------~~-~~~~-~~~~~~~~~~~v~~~---~~sp~--~  205 (359)
                      .+     +..++++.|-+++  ++++..+|.+.++.....      +. .... ..-|   .+..|+++   ++.|.  +
T Consensus       165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~  241 (321)
T PF03178_consen  165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGS  241 (321)
T ss_dssp             EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSS
T ss_pred             EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCC
Confidence            33     2346888887555  778888999998875321      11 1111 1112   34467777   55552  2


Q ss_pred             C------EEEEEeCCCeEEEEEc
Q 040274          206 D------VLGIGHSMGWSGILVP  222 (359)
Q Consensus       206 ~------~l~~g~~dg~~~i~~~  222 (359)
                      .      .++.++.+|.+.++.+
T Consensus       242 ~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  242 SESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             S-TTEEEEEEEEETTS-EEEEEE
T ss_pred             CcccccceEEEEecCCEEEEEEe
Confidence            2      4777888887776665

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.49  E-value=0.013  Score=54.31  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             ecCCCEEEEec---------CCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccc
Q 040274          118 HPNGHLMATTG---------KECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRY  185 (359)
Q Consensus       118 ~p~g~~l~s~~---------~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~  185 (359)
                      |||+++++...         ..+.+.+||+.+++.....  ...+....|||+| .++...++.|.++++..+.....+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence            57777766632         2367999999997654433  4578999999999 7888888999999865542211111


Q ss_pred             cccc----CCC--------CcceeEEEEccCCCEEEEEeCC
Q 040274          186 MGNS----MVK--------GYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       186 ~~~~----~~~--------~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .+..    +.+        -..-..+-|||||++|+....|
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            1100    000        1123568899999999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.099  Score=53.24  Aligned_cols=68  Identities=21%  Similarity=0.391  Sum_probs=55.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEE---ecCCCEEEEecCCCeEEEEEc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAF---HPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~---~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      +|++++|+.+|..++.|..+|.|.+||+.++.++..+..|..+++++-+   ..++..++++..-|.  +|.+
T Consensus       132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            8999999999999999999999999999999988888877666555443   445667888877776  5543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.37  E-value=0.18  Score=48.28  Aligned_cols=107  Identities=15%  Similarity=0.208  Sum_probs=68.8

Q ss_pred             ceeEEEEcCCC----CEEEEEeCCCeEEEEeCC-----CCcceEEeecCCC---C--eEEEEEecCCCEEEEecCCCeEE
Q 040274           69 RTDLMRVNPFN----GVVSLGHSGGTVTMWKPT-----TSALLIKMLYHQG---P--VSALAFHPNGHLMATTGKECKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~----~~l~tg~~dg~v~lwd~~-----~~~~~~~~~~h~~---~--v~~l~~~p~g~~l~s~~~d~~i~  134 (359)
                      .|..+.|.|-+    ..+.+.-....|.||.+.     +++.+..-.++-+   +  -.++.|+|....|+.-.....-.
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            89999999953    234445556789999875     2333333323221   1  24678999888877766655545


Q ss_pred             EEEcCCC--eeeEee--cCCceeEEEcCCC---cEEEEcCCcEEEEcC
Q 040274          135 IWDLRKY--EVLQTL--TGHAKTLDFSQKG---LLAVGTGSFAQILGD  175 (359)
Q Consensus       135 vwd~~~~--~~~~~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~  175 (359)
                      +++++..  .....+  .|.|.|.+|.+||   +++.+..=.-+|||.
T Consensus       138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5666543  223333  6789999999999   455555556789984

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.37  E-value=0.89  Score=42.96  Aligned_cols=89  Identities=10%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             EEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCC-----------eEEEE
Q 040274           53 LWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGG-----------TVTMW   94 (359)
Q Consensus        53 ~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg-----------~v~lw   94 (359)
                      .+.+||||++||.+-.                           ....+.|.+++..|+....+.           .|++|
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            5678999999997643                           223499999988776665332           37888


Q ss_pred             eCCCCcce--EEeecCCCC--eEEEEEecCCCEEEEecC---C-CeEEEEEcCCC
Q 040274           95 KPTTSALL--IKMLYHQGP--VSALAFHPNGHLMATTGK---E-CKIKIWDLRKY  141 (359)
Q Consensus        95 d~~~~~~~--~~~~~h~~~--v~~l~~~p~g~~l~s~~~---d-~~i~vwd~~~~  141 (359)
                      .+.+....  ..+......  ...+..++|+++|+..+.   + ..+++.|+..+
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            88776433  444443333  567888999998764332   3 45788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.012  Score=59.56  Aligned_cols=70  Identities=24%  Similarity=0.440  Sum_probs=55.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-cceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTS-ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+..++.|+..|.|-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..+..++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            4667888998899988887653 111111123679999999999999999999999999999998887777

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.33  E-value=0.028  Score=56.51  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCc-ceEEee----cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee---eEeecCCce
Q 040274           81 VVSLGHSGGTVTMWKPTTSA-LLIKML----YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV---LQTLTGHAK  152 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~-~~~~~~----~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~v~  152 (359)
                      ..++|-.+..+..||++-.. .+..-.    ......+|++-+.+| +||.|+.+|.|++||-.....   +..+..+|.
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence            45678888999999998542 222111    234456777766666 799999999999999432222   223356899


Q ss_pred             eEEEcCCC-cEEEEcCCcEEEEcC
Q 040274          153 TLDFSQKG-LLAVGTGSFAQILGD  175 (359)
Q Consensus       153 ~~~~s~~g-l~~~~~d~~i~v~d~  175 (359)
                      .|+.+.|| ++.+..+..|.++++
T Consensus       623 ~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             EEEecCCCcEEEEeecceEEEEEE
Confidence            99999999 777788888888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.036  Score=56.54  Aligned_cols=141  Identities=10%  Similarity=0.015  Sum_probs=86.0

Q ss_pred             ceeEEEEcCCCCEEEEEe--CCCeEEEEeCCCCc--------ceE---EeecCCCCeEEEEEecCCC-EEEEecCCCeEE
Q 040274           69 RTDLMRVNPFNGVVSLGH--SGGTVTMWKPTTSA--------LLI---KMLYHQGPVSALAFHPNGH-LMATTGKECKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~--------~~~---~~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~  134 (359)
                      .+..+..++|+...++.+  .+-.|..||+.+-.        ++.   +.........++.|+|.-. ..+.+..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            566777777766544433  44478999986431        111   1112234567788998543 356677889888


Q ss_pred             EEEcCCCe-eeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE
Q 040274          135 IWDLRKYE-VLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       135 vwd~~~~~-~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      +.-+.... .+.++  ....++++|+|.|  ++.+-..|++.-|.. .. .....+........+.|.||+|.....||+
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-cc-ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            88765332 23333  3346999999999  666667788888863 22 222222222211234799999998888776


Q ss_pred             EE
Q 040274          210 IG  211 (359)
Q Consensus       210 ~g  211 (359)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            53

>PRK13684 Ycf48-like protein; Provisional

Probab=96.21  E-value=0.97  Score=41.45  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=78.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEE-EeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTM-WKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~l-wd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+.++.+.|++.++++|. .|.+.. ++-...........-...++++.+.+++..++++ ..|.+.+=..+.+..-...
T Consensus       174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccc
Confidence            578889999886665554 455432 2211111111122334678999999998876654 5576643223333322211


Q ss_pred             --c-----CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          148 --T-----GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       148 --~-----~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                        +     ..+.++.+.|++ +++++.+|.+..-  ...+........... .....+.+.|..++..+++| ..|.+
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S--~d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G-~~G~i  325 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS--KDGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLG-QRGVL  325 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEEEcCCCeEEEe--CCCCCCCeECCcCCC-CCcceEEEEEeCCCceEEEC-CCceE
Confidence              1     236788899888 7788888866543  233333333222111 11257788888777665544 44543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.21  E-value=0.24  Score=48.06  Aligned_cols=153  Identities=10%  Similarity=0.087  Sum_probs=84.1

Q ss_pred             EEcCCCCEEEEEeCCC------------------eEEEEeCCCCcceEEeecCCCCe------EEEEEe----cCCC---
Q 040274           74 RVNPFNGVVSLGHSGG------------------TVTMWKPTTSALLIKMLYHQGPV------SALAFH----PNGH---  122 (359)
Q Consensus        74 ~~sp~~~~l~tg~~dg------------------~v~lwd~~~~~~~~~~~~h~~~v------~~l~~~----p~g~---  122 (359)
                      ++++.+..++.++.|+                  .|.-+|+.+|+.+..+..-....      ....+.    -+|.   
T Consensus       223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~  302 (488)
T cd00216         223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP  302 (488)
T ss_pred             eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence            3444456777777665                  79999999999888765211111      111111    1333   


Q ss_pred             EEEEecCCCeEEEEEcCCCeeeEeecCCceeEEEcCCCcEEE------------------EcCCcEEEEcCCCCCccccc
Q 040274          123 LMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAV------------------GTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       123 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~gl~~~------------------~~d~~i~v~d~~~~~~~~~~  184 (359)
                      .++.++.+|.+...|..+|+.+.........+..+|+-++..                  ..+|.|.-+|+.++......
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK  382 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence            577888899999999999998877632222233444222221                  12456777775554322221


Q ss_pred             ccc-ccC--CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          185 YMG-NSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       185 ~~~-~~~--~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      -.. +..  ..+.....-...-.+..|++|+.+|.+..+...+++
T Consensus       383 ~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         383 REGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             eCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence            111 000  000011111111256788888999988888776654

The alignment model contains an 8-bladed beta-propeller.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.20  E-value=0.76  Score=40.13  Aligned_cols=154  Identities=11%  Similarity=-0.004  Sum_probs=89.3

Q ss_pred             eeEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEeecC-CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           70 TDLMRVNPFNGVVSLGHSGG--TVTMWKPTTSALLIKMLYH-QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg--~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++.+....-. .-.--.++...| .+..-.=.++...+||..+.+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence            34577766777777777666  7999999999876554422 222234444433 3344445689999999999998888


Q ss_pred             e--cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcccccccc-ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          147 L--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMG-NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       147 ~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +  ++.-+.++...+.++.+.....|+++|..+- .....+.- ..+.+-..++-+.|. +|.+.|-.-....|..+.|.
T Consensus       126 ~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~  203 (264)
T PF05096_consen  126 FPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE  203 (264)
T ss_dssp             EE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             EecCCcceEEEcCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC
Confidence            7  4555777743333666666789999995443 22222211 111022245667775 66666666666666677776


Q ss_pred             CCC
Q 040274          224 SSE  226 (359)
Q Consensus       224 s~~  226 (359)
                      +|.
T Consensus       204 tG~  206 (264)
T PF05096_consen  204 TGK  206 (264)
T ss_dssp             T-B
T ss_pred             CCe
Confidence            654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.15  E-value=0.32  Score=45.29  Aligned_cols=139  Identities=13%  Similarity=0.047  Sum_probs=71.4

Q ss_pred             ceeEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Ccc--eEEeecCCCCeEEEEEecCCCEEEEecCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGH-----------SGG-TVTMWKPTT--SAL--LIKMLYHQGPVSALAFHPNGHLMATTGKECK  132 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-----------~dg-~v~lwd~~~--~~~--~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~  132 (359)
                      ....|+|.++|.++++-.           ..+ .|.+++-..  +..  ...+.......+++++.++| ++++ +....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence            456677777776655532           123 666665432  322  23333334456889999998 4444 44443


Q ss_pred             EEEEEcCC-------Ceee-EeecC-----C--ceeEEEcCCC--cEEEEcC-------------------CcEEEEcCC
Q 040274          133 IKIWDLRK-------YEVL-QTLTG-----H--AKTLDFSQKG--LLAVGTG-------------------SFAQILGDF  176 (359)
Q Consensus       133 i~vwd~~~-------~~~~-~~~~~-----~--v~~~~~s~~g--l~~~~~d-------------------~~i~v~d~~  176 (359)
                      +++.|...       .+.+ ..+..     +  +..+.|.|||  +++.+..                   +.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            33445432       1122 22311     1  5689999999  3433321                   234444422


Q ss_pred             CCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          177 SGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ..  ....+...   . .....++|+|+|+++++-..++
T Consensus       173 g~--~~e~~a~G---~-rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       173 GG--KLRVVAHG---F-QNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CC--eEEEEecC---c-CCCccceECCCCCEEEEccCCC
Confidence            11  12222111   1 1357899999999887655444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.04  E-value=0.15  Score=43.24  Aligned_cols=92  Identities=11%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             ceeEEEEcCCCCEEEE-EeCCCeEEEEe--CCCCc-----ceEEeec----CCCCeEEEEEecCCCEEEEecCCCeEEEE
Q 040274           69 RTDLMRVNPFNGVVSL-GHSGGTVTMWK--PTTSA-----LLIKMLY----HQGPVSALAFHPNGHLMATTGKECKIKIW  136 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~t-g~~dg~v~lwd--~~~~~-----~~~~~~~----h~~~v~~l~~~p~g~~l~s~~~d~~i~vw  136 (359)
                      --+.++|+.+.+.++. -+.+-+|.-||  ..+|.     .+..+..    ..-.--.++...+|++++++-..++|...
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            3477889887765554 45567887787  55553     2222221    01111345556788999998899999999


Q ss_pred             EcCCCeeeEee---cCCceeEEEcCCC
Q 040274          137 DLRKYEVLQTL---TGHAKTLDFSQKG  160 (359)
Q Consensus       137 d~~~~~~~~~~---~~~v~~~~~s~~g  160 (359)
                      |..+|+.+.++   ...++|+||-...
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecCCC
Confidence            99999999888   3458999997653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.87  E-value=0.63  Score=41.99  Aligned_cols=89  Identities=8%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCC-CeEEEEeCCC--C---cc--eEEeecCCCCeEEEEEecCCCEEEEecCCC-eEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSG-GTVTMWKPTT--S---AL--LIKMLYHQGPVSALAFHPNGHLMATTGKEC-KIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d-g~v~lwd~~~--~---~~--~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~-~i~vwd~~  139 (359)
                      .-+.|+||||++.|+.+... +.|..|++..  +   ..  ...+..+.+..-.++...+|++.+++..+| .|.+|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            45889999999888777654 7788887652  2   11  112223345566778888898876555554 89999988


Q ss_pred             CCeeeEeec---CCceeEEEcC
Q 040274          140 KYEVLQTLT---GHAKTLDFSQ  158 (359)
Q Consensus       140 ~~~~~~~~~---~~v~~~~~s~  158 (359)
                       ++.+..+.   ..+++++|--
T Consensus       244 -G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             -CcEEEEEECCCCCCccceEeC
Confidence             88887773   4467888754

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.79  E-value=1.1  Score=38.67  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=68.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCc-eeEE
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHA-KTLD  155 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v-~~~~  155 (359)
                      ..+++.|+..+.+.--|+.+|.....-.. ...+-+-+.- -|.+++.|+..|.+++.+..+|.....+  -+.| ....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            45788888889999999999877655322 2223222221 4678999999999999999999877766  2333 2334


Q ss_pred             EcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          156 FSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       156 ~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      ..+++  ++.++.|++.+..|..+.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             EcCCCceEEEecCCCcEEEeccccc
Confidence            45565  778888999999996554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.78  E-value=1.1  Score=41.99  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=31.8

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec
Q 040274           77 PFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP  119 (359)
Q Consensus        77 p~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p  119 (359)
                      +|...|+.|..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus        77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            34568999999999999986 4666655556788888877743

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.72  E-value=0.33  Score=42.42  Aligned_cols=92  Identities=9%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             EEcCCCCEEEEEeCC-----CeEEEEeCCCC-cceEEeecCCCCeEEEEEecCCCEEEEecC------C-----------
Q 040274           74 RVNPFNGVVSLGHSG-----GTVTMWKPTTS-ALLIKMLYHQGPVSALAFHPNGHLMATTGK------E-----------  130 (359)
Q Consensus        74 ~~sp~~~~l~tg~~d-----g~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~------d-----------  130 (359)
                      .|||||.+|+..-+|     |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.++.      |           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            489999998876543     68999998854 456667788877789999999999887654      1           


Q ss_pred             -CeEEEEEcCCCeeeEee--c-----CCceeEEEcCCC-cEEEE
Q 040274          131 -CKIKIWDLRKYEVLQTL--T-----GHAKTLDFSQKG-LLAVG  165 (359)
Q Consensus       131 -~~i~vwd~~~~~~~~~~--~-----~~v~~~~~s~~g-l~~~~  165 (359)
                       .++.+.|..+|..+...  +     -.+..++..+|| +++++
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence             23555666666655443  2     236778888888 55544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.70  E-value=0.38  Score=42.19  Aligned_cols=100  Identities=12%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             CeEEEEEecCCCEEEEec---CCCeEEEEEcCCCeeeEeecCCceeEEEcCCC-cEEEEc-CCcEEEEc-CCCCCccccc
Q 040274          111 PVSALAFHPNGHLMATTG---KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG-LLAVGT-GSFAQILG-DFSGSHNYSR  184 (359)
Q Consensus       111 ~v~~l~~~p~g~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~g-l~~~~~-d~~i~v~d-~~~~~~~~~~  184 (359)
                      .+.+.+++++|..++...   ....++++..............++...|+++| ++++.. +....++. ...+......
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            688999999999877665   33456666543222111123467888999999 555544 44445552 2222111111


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      .....  ....|.++.+||||..++.-.
T Consensus       105 v~~~~--~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  105 VDWPG--LRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             ecccc--cCCceEEEEECCCCcEEEEEE
Confidence            22111  111699999999998877665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.46  Score=44.25  Aligned_cols=138  Identities=7%  Similarity=0.047  Sum_probs=85.9

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCC---CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTT---SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~---~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +.+-|...++.|++.. .|.+.=|-+..   .-++.--....|+|.++.|++|...+|.--.|..|.+++....+....+
T Consensus        26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            4455555454444332 34444454332   2222222245679999999999999999999999999988543332222


Q ss_pred             -------cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          148 -------TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       148 -------~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                             ...|..++|+.+.-++.-.+..+.+|-+......+.....+..    .|.=..|+|+.+.++.++.
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~----nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNL----NVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhccc----CccEEEEccccceEeeecc
Confidence                   2347889998887333334445677765555455666666654    6777888998877665544

>PRK10115 protease 2; Provisional

Probab=95.61  E-value=3  Score=42.29  Aligned_cols=167  Identities=8%  Similarity=-0.054  Sum_probs=87.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------c-eeEEEEcCCCCEEEEEeCC------CeEEEEeCCCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------R-TDLMRVNPFNGVVSLGHSG------GTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~-v~~l~~sp~~~~l~tg~~d------g~v~lwd~~~~   99 (359)
                      ..+.+||||++|+.+.+                         . -..++|++|+..|+.+..+      ..|..|++.++
T Consensus       130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence            45678999999998765                         1 1469999998876665432      36888888887


Q ss_pred             --cceEEeecCCCCeE-EEEEecCCCEEEEecC---CCeEEEEEcC--CCeeeEee--c-CCceeEEEcCCC-cEEEEc-
Q 040274          100 --ALLIKMLYHQGPVS-ALAFHPNGHLMATTGK---ECKIKIWDLR--KYEVLQTL--T-GHAKTLDFSQKG-LLAVGT-  166 (359)
Q Consensus       100 --~~~~~~~~h~~~v~-~l~~~p~g~~l~s~~~---d~~i~vwd~~--~~~~~~~~--~-~~v~~~~~s~~g-l~~~~~-  166 (359)
                        +-...+........ ++..+.++.+++..+.   ++.+.+|+..  .+.....+  . +....+. +..+ ++..+. 
T Consensus       210 ~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~  288 (686)
T PRK10115        210 ASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNR  288 (686)
T ss_pred             hhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcC
Confidence              33344443333333 2333447777554433   4568888853  33322222  2 2222222 2223 333332 


Q ss_pred             C-C--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          167 G-S--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       167 d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      + .  .|...++... .....+..+.  ....|..+.++ .+.++++...+|...+++-.
T Consensus       289 ~~~~~~l~~~~~~~~-~~~~~l~~~~--~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        289 HGKNFGLYRTRVRDE-QQWEELIPPR--ENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCCCceEEEecCCCc-ccCeEEECCC--CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            2 2  3333343221 1222333331  12357777776 33455566667776665543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.42  E-value=1.3  Score=44.73  Aligned_cols=73  Identities=12%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Ccc--e-EEe--------ecCCCCeEEEEEecC---CCEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT---------SAL--L-IKM--------LYHQGPVSALAFHPN---GHLMA  125 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~---------~~~--~-~~~--------~~h~~~v~~l~~~p~---g~~l~  125 (359)
                      .|..+.+||+|.+++..+..|.+.+.=+..         |..  . .++        ..+...|..+.|+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            788888899888888887766544432221         111  1 111        123457889999995   57899


Q ss_pred             EecCCCeEEEEEcCCC
Q 040274          126 TTGKECKIKIWDLRKY  141 (359)
Q Consensus       126 s~~~d~~i~vwd~~~~  141 (359)
                      .-+.|+++++||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            9999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.37  E-value=0.94  Score=39.54  Aligned_cols=132  Identities=17%  Similarity=0.078  Sum_probs=84.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-Eee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-QTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-~~~  147 (359)
                      .-..++-+|||..-+++...|.|--.|+.+|+....-.+....-+.+...|||..-++-+.. -|.-.|..+.+.. ..+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            45677788899888888888888888999998665555555666788889999877664443 5666676555431 122


Q ss_pred             -----cCCceeEEEcCCC-cEEEEcC----------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          148 -----TGHAKTLDFSQKG-LLAVGTG----------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       148 -----~~~v~~~~~s~~g-l~~~~~d----------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                           .+......|.+.| +...+..          +.|.+|+...               +...+.++..|+|.+-++.
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------------G~gpyGi~atpdGsvwyas  206 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------------GGGPYGICATPDGSVWYAS  206 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC---------------CCCCcceEECCCCcEEEEe
Confidence                 2346788999999 4444332          2444444322               2234556667777665554


Q ss_pred             eCCCe
Q 040274          212 HSMGW  216 (359)
Q Consensus       212 ~~dg~  216 (359)
                      -.+..
T Consensus       207 lagna  211 (353)
T COG4257         207 LAGNA  211 (353)
T ss_pred             ccccc
Confidence            44443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.36  E-value=0.34  Score=47.70  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE--ee--cCCceeEEEcC--CC--cEEEEcCCcEEEEcCC-----C
Q 040274          111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ--TL--TGHAKTLDFSQ--KG--LLAVGTGSFAQILGDF-----S  177 (359)
Q Consensus       111 ~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~--~~--~~~v~~~~~s~--~g--l~~~~~d~~i~v~d~~-----~  177 (359)
                      ...-+.-+.-++..++-+....+.|||.+.+....  .+  .+.|.+++|..  +|  ++++|..+.|.+|--.     .
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444444545444444445679999999876433  33  56789999864  55  9999999999998521     1


Q ss_pred             CCcccccc-----ccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          178 GSHNYSRY-----MGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       178 ~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      .......+     ..+   ...+|.+..|.++|.+++.++
T Consensus       111 ~~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSH---TPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             CCcccceeEEEEeecC---CCCCccceeEecCCeEEEEeC
Confidence            11111111     122   223788999999987555443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.35  E-value=1.2  Score=42.05  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=48.3

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCCcEEEEcCCcEEEEc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKGLLAVGTGSFAQILG  174 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~gl~~~~~d~~i~v~d  174 (359)
                      .+++..+++||+|+++|.-..+|.+.+....-.+.+..+    ...+..+.|+.+..++......|.++.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence            468999999999999999999999999876655555555    245678888776644444455565554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.32  E-value=2.2  Score=40.12  Aligned_cols=136  Identities=13%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-----eeEee
Q 040274           73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-----VLQTL  147 (359)
Q Consensus        73 l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-----~~~~~  147 (359)
                      +..++++.+++.|..-..++-||.-...-...-......++++.|.+++.+++++ .+|.+.. ....+.     .....
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~  321 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEA  321 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeec
Confidence            3445666666555433333334432110011112334568899999999877665 5565443 333332     22222


Q ss_pred             c-----CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          148 T-----GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       148 ~-----~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      .     ..+.++.|.+++ +++++..|.+....  ..+........... .....+.+.|.++++.+++|..
T Consensus       322 ~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~--D~G~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~G~~  390 (398)
T PLN00033        322 DIKSRGFGILDVGYRSKKEAWAAGGSGILLRST--DGGKSWKRDKGADN-IAANLYSVKFFDDKKGFVLGND  390 (398)
T ss_pred             ccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC--CCCcceeEccccCC-CCcceeEEEEcCCCceEEEeCC
Confidence            1     237889999888 88888888777664  23333333221111 1225789999887776665543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=0.14  Score=48.30  Aligned_cols=108  Identities=16%  Similarity=0.235  Sum_probs=73.2

Q ss_pred             ceeEEEEcCCCCE-------EEEEeCCCeEEEEeCCCCcc--eEEeecCC----CCeEEEEEecCCCEEEEecCCCeEEE
Q 040274           69 RTDLMRVNPFNGV-------VSLGHSGGTVTMWKPTTSAL--LIKMLYHQ----GPVSALAFHPNGHLMATTGKECKIKI  135 (359)
Q Consensus        69 ~v~~l~~sp~~~~-------l~tg~~dg~v~lwd~~~~~~--~~~~~~h~----~~v~~l~~~p~g~~l~s~~~d~~i~v  135 (359)
                      .|+-+.+.|++..       -+.|-.|..|+-||++-...  +....+|.    ....|.+-..+| +++.||.+|.|++
T Consensus       377 di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRL  455 (644)
T KOG2395|consen  377 DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRL  455 (644)
T ss_pred             CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEe
Confidence            6777788886542       24566788999999884322  22222332    234455544455 8999999999999


Q ss_pred             EEcCCCe---eeEeecCCceeEEEcCCC-cEEEEcCCcEEEEcCCC
Q 040274          136 WDLRKYE---VLQTLTGHAKTLDFSQKG-LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       136 wd~~~~~---~~~~~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~  177 (359)
                      ||-..-.   .+-.+..+|..+..+.+| ++.+..+.++.+.++..
T Consensus       456 Ydri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  456 YDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            9973222   333345679999999999 88888888888887543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.27  E-value=0.68  Score=35.83  Aligned_cols=102  Identities=14%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------ceEEeecCCCCeEEEEEec----C-CCEEEEecCCCeEEEEE
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--------LLIKMLYHQGPVSALAFHP----N-GHLMATTGKECKIKIWD  137 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~~l~~~p----~-g~~l~s~~~d~~i~vwd  137 (359)
                      ..-.|......|++++.-|.|.|+++....        .+..+ .-...|++++-.+    + ...|+. +...+|-.||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~Lli-Gt~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLI-GTQTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEE-eccceEEEEE
Confidence            344577777789999999999999987432        22333 3356677776544    2 233444 4556799999


Q ss_pred             cCCCeeeE--eecCCceeEEEcCC-----CcEEEEcCCcEEEEc
Q 040274          138 LRKYEVLQ--TLTGHAKTLDFSQK-----GLLAVGTGSFAQILG  174 (359)
Q Consensus       138 ~~~~~~~~--~~~~~v~~~~~s~~-----gl~~~~~d~~i~v~d  174 (359)
                      +....-+.  .+++.++++.+-.-     -++.++.+..|.-||
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd  123 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD  123 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence            98765432  33666777766321     267777677777777

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=0.18  Score=51.78  Aligned_cols=107  Identities=10%  Similarity=0.009  Sum_probs=70.4

Q ss_pred             CCeEEEEEecCCCEEEEe--cCCCeEEEEEcCCCee--------eEee------cCCceeEEEcCCC---cEEEEcCCcE
Q 040274          110 GPVSALAFHPNGHLMATT--GKECKIKIWDLRKYEV--------LQTL------TGHAKTLDFSQKG---LLAVGTGSFA  170 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~--~~d~~i~vwd~~~~~~--------~~~~------~~~v~~~~~s~~g---l~~~~~d~~i  170 (359)
                      -++..+.+++|+...++.  +.+-.|..||+++...        +...      .....++.|.|.-   .+++..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666777787664443  3445799999976321        1111      1235788899876   5667778889


Q ss_pred             EEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          171 QILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .|..+.........+.     ....+++++|+|.|..|++|-..|.+.=|.
T Consensus       181 ~V~~~~~~~~~v~s~p-----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP-----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             hhhhhhhhhhhhcccC-----cccceeeEEeccccceeeEecCCCeEEEee
Confidence            8887543322222222     233689999999999999999999865443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.00  E-value=1.7  Score=40.86  Aligned_cols=146  Identities=10%  Similarity=0.088  Sum_probs=83.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--c------CCCCeEEEEEec-----CC---CEEEEecCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--Y------HQGPVSALAFHP-----NG---HLMATTGKECK  132 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~------h~~~v~~l~~~p-----~g---~~l~s~~~d~~  132 (359)
                      .|++++.| +=.+++.|..+|.+.|.|++....+..-.  .      ....|+++.|.-     |+   -+|++|...|.
T Consensus        88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            79999987 44599999999999999998776665422  1      234678888863     33   46888889999


Q ss_pred             EEEEEcCC---CeeeEee-------cCCceeEE-EcC----------------------CCcEEEEcCCcEEEEcCCCCC
Q 040274          133 IKIWDLRK---YEVLQTL-------TGHAKTLD-FSQ----------------------KGLLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       133 i~vwd~~~---~~~~~~~-------~~~v~~~~-~s~----------------------~gl~~~~~d~~i~v~d~~~~~  179 (359)
                      +.+|.+..   +.....+       .+.+..+. ++.                      .|++.++.+..++|+...+..
T Consensus       167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k  246 (395)
T PF08596_consen  167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK  246 (395)
T ss_dssp             EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred             EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence            99998752   1111111       22332222 211                      125666677889999865543


Q ss_pred             ccccccccccCCCCcceeEEEEc-----cCCCEEEEEeCCCeEEEE
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFR-----PYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~~g~~dg~~~i~  220 (359)
                      .....+ ...    ..+..+.+-     ..+..|++-..+|.+.++
T Consensus       247 ~~~K~~-~~~----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  247 GAHKSF-DDP----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             EEEEE--SS-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             ccceee-ccc----cccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence            222222 221    133444553     356778888888887775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.95  E-value=2.8  Score=38.06  Aligned_cols=168  Identities=12%  Similarity=0.085  Sum_probs=94.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCcceEEe---
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPT-TSALLIKM---  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~-~~~~~~~~---  105 (359)
                      ..+.+|.||++++....                     .--|...-| .+.-|.+-|.||++....+. .|+...+.   
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~  177 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV  177 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence            66789999999988765                     112222234 23467788899999888887 45443221   


Q ss_pred             -ecCCCCe-EEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEee-------------cCCceeEEEcCCC--cEEE-E
Q 040274          106 -LYHQGPV-SALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTL-------------TGHAKTLDFSQKG--LLAV-G  165 (359)
Q Consensus       106 -~~h~~~v-~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~-------------~~~v~~~~~s~~g--l~~~-~  165 (359)
                       ..-..++ ..-.+...+..++..+-+|.|+--|+.....  ...+             ++.-.-+++++..  |+.. -
T Consensus       178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh  257 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH  257 (342)
T ss_dssp             SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred             cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence             1222222 3444555555666678899999988876442  2222             1223446666543  2221 1


Q ss_pred             --cC-------CcEEEEcCCCCCccccccc-cccCCCCcceeEEEEccCCC-EEEEE-eCCCeEEEEEcCCCC
Q 040274          166 --TG-------SFAQILGDFSGSHNYSRYM-GNSMVKGYQIGKVSFRPYED-VLGIG-HSMGWSGILVPRSSE  226 (359)
Q Consensus       166 --~d-------~~i~v~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~g-~~dg~~~i~~~gs~~  226 (359)
                        .+       ..|.+||+.+. +.+..+. .+      .+.++..+.+.. .|++. ..++.+.++...++.
T Consensus       258 ~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  258 QGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             E--TT-TTS-EEEEEEEETTTT-EEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CCCCCCccCCceEEEEEECCCC-eEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence              11       15777786554 4444443 33      688999998775 44433 346777777776653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.93  E-value=0.97  Score=42.80  Aligned_cols=134  Identities=7%  Similarity=-0.014  Sum_probs=84.7

Q ss_pred             CCCEEEE-EeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCC--------CEEEEecCCCeEEEEEcCC-CeeeE--
Q 040274           78 FNGVVSL-GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG--------HLMATTGKECKIKIWDLRK-YEVLQ--  145 (359)
Q Consensus        78 ~~~~l~t-g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g--------~~l~s~~~d~~i~vwd~~~-~~~~~--  145 (359)
                      +..+|++ |.....++-.|+..|+.+-.+..|...  -+.|+|+.        ..|+ |-.+..|.-.|.|. |..+.  
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence            4444443 444556777788888888888776664  56777742        2333 44455566667664 32222  


Q ss_pred             eecCC-----ceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TLTGH-----AKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~~~~-----v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .....     -+|..-..+| ++++|..|.|++|| +-+......+++..    ..|-.+..+.+|++|++.|..-.+-+
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyD-Rig~rAKtalP~lG----~aIk~idvta~Gk~ilaTCk~yllL~  629 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYD-RIGKRAKTALPGLG----DAIKHIDVTANGKHILATCKNYLLLT  629 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeeh-hhcchhhhcCcccc----cceeeeEeecCCcEEEEeecceEEEE
Confidence            22222     3445555677 77788889999999 55544444555543    37999999999999988887765444

>PHA02713 hypothetical protein; Provisional

Probab=94.92  E-value=0.34  Score=47.78  Aligned_cols=131  Identities=7%  Similarity=0.047  Sum_probs=64.0

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCcceE--EeecCCCCeEEEEEecCCCEEEEecCCC-------------------
Q 040274           78 FNGVVSLGHSGG-----TVTMWKPTTSALLI--KMLYHQGPVSALAFHPNGHLMATTGKEC-------------------  131 (359)
Q Consensus        78 ~~~~l~tg~~dg-----~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~p~g~~l~s~~~d~-------------------  131 (359)
                      +|.+.+.|+.++     +|..||+.+.+...  .+.........++  -+|.+.+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            345566676653     48889988664322  1211111111222  3677777777652                   


Q ss_pred             ----eEEEEEcCCCee--eEeec-CCc-eeEEEcCCC-cEEEEcC------CcEEEEcCCC-CCcc-ccccccccCCCCc
Q 040274          132 ----KIKIWDLRKYEV--LQTLT-GHA-KTLDFSQKG-LLAVGTG------SFAQILGDFS-GSHN-YSRYMGNSMVKGY  194 (359)
Q Consensus       132 ----~i~vwd~~~~~~--~~~~~-~~v-~~~~~s~~g-l~~~~~d------~~i~v~d~~~-~~~~-~~~~~~~~~~~~~  194 (359)
                          .+..||..+.+-  +..+. ... .+++...+. ++.||.+      ..+..||+.+ .... ...+.....    
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~----  504 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS----  504 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc----
Confidence                477788876543  22221 111 122222222 5555543      2467899765 3222 222222211    


Q ss_pred             ceeEEEEccCCCEEEEEeCCCe
Q 040274          195 QIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       195 ~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      ....+.  -+|.+.++|+.+|.
T Consensus       505 ~~~~~~--~~~~iyv~Gg~~~~  524 (557)
T PHA02713        505 ALHTIL--HDNTIMMLHCYESY  524 (557)
T ss_pred             cceeEE--ECCEEEEEeeecce
Confidence            122222  27788888888873

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.84  E-value=0.11  Score=31.44  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=24.4

Q ss_pred             CCeEEEEEecCCC---EEEEecCCCeEEEEEcCC
Q 040274          110 GPVSALAFHPNGH---LMATTGKECKIKIWDLRK  140 (359)
Q Consensus       110 ~~v~~l~~~p~g~---~l~s~~~d~~i~vwd~~~  140 (359)
                      +.|.++.|+|++.   +|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4678889997544   788887788899999884

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.83  E-value=0.14  Score=43.24  Aligned_cols=93  Identities=15%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCCceeEE
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLD  155 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~v~~~~  155 (359)
                      .+..+++|+.+|.|.+|.++-........  +-......+.--.++.+..+++.||.|+.|++..++.+-....    ..
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~----h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ----HN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc----cc
Confidence            45678899999999999987322111111  1122222232233566888999999999999887665433321    11


Q ss_pred             EcCCC-cEEEEcCCcEEEEc
Q 040274          156 FSQKG-LLAVGTGSFAQILG  174 (359)
Q Consensus       156 ~s~~g-l~~~~~d~~i~v~d  174 (359)
                      +.|.. +++.+.+..|.+|+
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~  164 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIAD  164 (238)
T ss_pred             CCCcceeEEecCCceEEeec
Confidence            22222 55566666666665

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.80  E-value=1.7  Score=43.94  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=41.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------------------ceeEEEEcCC---CCEEEEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------------------RTDLMRVNPF---NGVVSLG   85 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------------------~v~~l~~sp~---~~~l~tg   85 (359)
                      ..+.++|+|++|+..|.                                           .|..+.|||.   +..|+.-
T Consensus        88 ~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL  167 (717)
T PF10168_consen   88 HQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL  167 (717)
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence            78889999999998776                                           7889999996   4788888


Q ss_pred             eCCCeEEEEeCCCC
Q 040274           86 HSGGTVTMWKPTTS   99 (359)
Q Consensus        86 ~~dg~v~lwd~~~~   99 (359)
                      ..|+++++||+...
T Consensus       168 tsdn~lR~y~~~~~  181 (717)
T PF10168_consen  168 TSDNTLRLYDISDP  181 (717)
T ss_pred             ecCCEEEEEecCCC
Confidence            99999999998754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.74  E-value=1.1  Score=43.52  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=49.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCC------CeE--EEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG------PVS--ALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~------~v~--~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +..+++++.++.|.-.|..+++.+..+.....      .+.  .+++. ++..++.++.++.|+.+|..+|+.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            45677788889999999999988877654322      110  11111 2257778888999999999999988777

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.67  E-value=0.62  Score=46.02  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCcceEEeecCCCCeEEEEE-ecCCCEEEEecCCC------eEEEEEcCCCeee-
Q 040274           78 FNGVVSLGHSGG-----TVTMWKPTTSALLIKMLYHQGPVSALAF-HPNGHLMATTGKEC------KIKIWDLRKYEVL-  144 (359)
Q Consensus        78 ~~~~l~tg~~dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~-~p~g~~l~s~~~d~------~i~vwd~~~~~~~-  144 (359)
                      +|.+.++|+.||     +|..||+.+.+.-..-.... ...+.+. .-+|.+.++||.|+      ++..||..+.... 
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            466778888886     48889988765332221111 2222222 23677888888664      4778888775432 


Q ss_pred             -EeecC--CceeEEEcCCC-cEEEEcCC-----cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          145 -QTLTG--HAKTLDFSQKG-LLAVGTGS-----FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       145 -~~~~~--~v~~~~~s~~g-l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                       ..+..  .-..++.-.+- ++.+|.++     +|..||..+........+...   ...+..+  .-++...++|+.+|
T Consensus       459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~--~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVV--VLGGKLYAVGGFDG  533 (571)
T ss_pred             cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEE--EECCEEEEEecccC
Confidence             22211  11223333333 55666554     478898765533332222221   1112122  22667778888887


Q ss_pred             eEEEEEcCCCCCceeeec
Q 040274          216 WSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       216 ~~~i~~~gs~~~~~~~~~  233 (359)
                      ...+=..-.-|+..+.|.
T Consensus       534 ~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  534 NNNLNTVECYDPETDTWT  551 (571)
T ss_pred             ccccceeEEcCCCCCcee
Confidence            543322222345555554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.60  E-value=0.83  Score=42.51  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----c--ceEE-eec----CCCCeEEEEEecCCCEEEEecCC------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS-----A--LLIK-MLY----HQGPVSALAFHPNGHLMATTGKE------  130 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~-----~--~~~~-~~~----h~~~v~~l~~~p~g~~l~s~~~d------  130 (359)
                      ..+.|++.+++ +++ ++.+...++.|....     +  .+.. +..    +....+.+.|.|||.+.++.+..      
T Consensus        73 ~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence            45778888877 444 444433334454321     1  1211 222    13447789999999887765521      


Q ss_pred             -------------CeEEEEEcCCCeeeEee-cC--CceeEEEcCCC-cEEEEc
Q 040274          131 -------------CKIKIWDLRKYEVLQTL-TG--HAKTLDFSQKG-LLAVGT  166 (359)
Q Consensus       131 -------------~~i~vwd~~~~~~~~~~-~~--~v~~~~~s~~g-l~~~~~  166 (359)
                                   +.|..+|...+.. ..+ .+  ....++|+|+| ++++..
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence                         4456666654432 222 22  24789999999 555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.59  E-value=0.57  Score=44.38  Aligned_cols=91  Identities=12%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|..+..|+.|..++..+.+|.+.++=++...+-..+......|+|-.+.-+. .|++.+.  .+               
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~--~l---------------  166 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSST--SL---------------  166 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCC--ce---------------
Confidence            68888889999999999899988777655444444444434445554443322 2222211  01               


Q ss_pred             CCceeEEEcCCC-----cEEEEcCCcEEEEcCCCC
Q 040274          149 GHAKTLDFSQKG-----LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       149 ~~v~~~~~s~~g-----l~~~~~d~~i~v~d~~~~  178 (359)
                       .+...+|+|+.     ++.-+.|+.|++||....
T Consensus       167 -tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  167 -TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             -eeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence             13456777765     677788889999986443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.48  E-value=2.4  Score=43.61  Aligned_cols=108  Identities=11%  Similarity=0.100  Sum_probs=68.6

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC----cceEEee-cCCCCe----------EEEEEecCCCEEEEecCCCe
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS----ALLIKML-YHQGPV----------SALAFHPNGHLMATTGKECK  132 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~----~~~~~~~-~h~~~v----------~~l~~~p~g~~l~s~~~d~~  132 (359)
                      +...++|+| +...||+....|...||++...    .....+. .+.+.+          ..+.|.++.+.|+.++. ..
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence            788999999 5678999999999999999211    1111111 122222          36778887777777655 45


Q ss_pred             EEEEEcCCCeeeEee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          133 IKIWDLRKYEVLQTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       133 i~vwd~~~~~~~~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      +.++|+.+......+     ...|.++.-+|..  .+..-+...|..+++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            888899876542212     2457788888873  22222335677777554

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.42  E-value=1.5  Score=40.24  Aligned_cols=120  Identities=17%  Similarity=0.177  Sum_probs=72.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec-
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-  107 (359)
                      +++.+.|+|.+++++..                       .++++.+.+++..+++| ..|.+.+=+.+.+..=..... 
T Consensus       176 ~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~  254 (334)
T PRK13684        176 RNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIP  254 (334)
T ss_pred             EEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCC
Confidence            78888898888876543                       56778888888777665 456664323343321111111 


Q ss_pred             ---CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee------cCCceeEEEcCCC-cEEEEcCCcEEEEc
Q 040274          108 ---HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG-LLAVGTGSFAQILG  174 (359)
Q Consensus       108 ---h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g-l~~~~~d~~i~v~d  174 (359)
                         ....+.++.+.|++..++ ++.+|.|.. -...++.-...      +...+.+.|..++ .++++..|.|.-|+
T Consensus       255 ~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        255 EITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             ccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence               123478889998877554 556676553 33433332222      2235667776666 77888888888776

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.34  E-value=0.3  Score=41.80  Aligned_cols=28  Identities=11%  Similarity=0.154  Sum_probs=23.3

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           75 VNPFNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        75 ~sp~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      +...+.++++...+|.+++||+.+++.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            4556888999999999999999987653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.30  E-value=3  Score=39.35  Aligned_cols=136  Identities=10%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcce--EEe-e-cCCCCeEEEEEec----CCCEEEEecCCCeEEEEEcCC--Ce-----
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALL--IKM-L-YHQGPVSALAFHP----NGHLMATTGKECKIKIWDLRK--YE-----  142 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~--~~~-~-~h~~~v~~l~~~p----~g~~l~s~~~d~~i~vwd~~~--~~-----  142 (359)
                      +...|++||..|.++||++......  ..+ . --..+|..+.+..    .....++.-.-..+.||.+..  |.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3458999999999999999654311  111 1 2246777776532    122222224456677777631  11     


Q ss_pred             -----eeEe--ecCCceeEEEcCCC-------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          143 -----VLQT--LTGHAKTLDFSQKG-------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       143 -----~~~~--~~~~v~~~~~s~~g-------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                           .+..  +.....++++-|=|       +..-+.||.+.+|+ ...-.....++.. .    -...+.|+|.-+.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe-qe~~~f~~~lp~~-l----lPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE-QESFAFSRFLPDF-L----LPGPLCYCPRTDSF  189 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEe-CCcEEEEEEcCCC-C----CCcCeEEeecCCEE
Confidence                 1111  13334555555433       56677899999998 3331112222222 2    23447888888889


Q ss_pred             EEEeCCCeEEE
Q 040274          209 GIGHSMGWSGI  219 (359)
Q Consensus       209 ~~g~~dg~~~i  219 (359)
                      ++++.+..+..
T Consensus       190 vt~sss~~l~~  200 (418)
T PF14727_consen  190 VTASSSWTLEC  200 (418)
T ss_pred             EEecCceeEEE
Confidence            98888876654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.28  E-value=0.4  Score=44.69  Aligned_cols=92  Identities=12%  Similarity=0.075  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCCCcceEEeecCC--CCeEEEEE--ecCCCE-EEEecCCCeEEEEEc-CCCe----eeEee----------
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQ--GPVSALAF--HPNGHL-MATTGKECKIKIWDL-RKYE----VLQTL----------  147 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~--~~v~~l~~--~p~g~~-l~s~~~d~~i~vwd~-~~~~----~~~~~----------  147 (359)
                      ..++.+||+.+.+.++++.-..  .....+.|  +|+..+ |+.+....+|..|-- ..+.    .+..+          
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            4579999999999998887432  23456666  444444 444555666766643 2222    12222          


Q ss_pred             ----------cCCceeEEEcCCC--cEEEE-cCCcEEEEcCCCCC
Q 040274          148 ----------TGHAKTLDFSQKG--LLAVG-TGSFAQILGDFSGS  179 (359)
Q Consensus       148 ----------~~~v~~~~~s~~g--l~~~~-~d~~i~v~d~~~~~  179 (359)
                                ++-+++|.+|.|.  |+.++ ..|.|+.||+....
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                      1236899999998  33333 47999999976653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.04  E-value=4.6  Score=36.87  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCe------EEEEeCCC--C--cce-----EEeecCCC--------CeEEEEEecCCCEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGT------VTMWKPTT--S--ALL-----IKMLYHQG--------PVSALAFHPNGHLMA  125 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~------v~lwd~~~--~--~~~-----~~~~~h~~--------~v~~l~~~p~g~~l~  125 (359)
                      .++.|.+.|++..+++.+.+|.      +..+++..  +  ..+     ..+....+        ..-+|++.++|.+++
T Consensus        21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i  100 (326)
T PF13449_consen   21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI  100 (326)
T ss_pred             cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence            4778888876666777777777      55555443  1  111     11111122        233788878898888


Q ss_pred             EecCC------CeEEEEEcCCCeeeEee--c----------------CCceeEEEcCCC--cEEEEc-----CC------
Q 040274          126 TTGKE------CKIKIWDLRKYEVLQTL--T----------------GHAKTLDFSQKG--LLAVGT-----GS------  168 (359)
Q Consensus       126 s~~~d------~~i~vwd~~~~~~~~~~--~----------------~~v~~~~~s~~g--l~~~~~-----d~------  168 (359)
                      +.-.+      ..|..+|.. |..+..+  +                ...-+++++|+|  ++++..     |+      
T Consensus       101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~  179 (326)
T PF13449_consen  101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD  179 (326)
T ss_pred             EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence            87777      889999876 6554443  1                124689999998  555442     21      


Q ss_pred             -----cEEEEcCCCCCccccc--cccccC---CCCcceeEEEEccCCCEEEEE
Q 040274          169 -----FAQILGDFSGSHNYSR--YMGNSM---VKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       169 -----~i~v~d~~~~~~~~~~--~~~~~~---~~~~~v~~~~~sp~~~~l~~g  211 (359)
                           .|..||..........  |.....   .....|+.+.+.+++++|+.=
T Consensus       180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                 2334554332222222  211100   023468999999999977653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.98  E-value=4.1  Score=35.92  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--------------eecCCCCeEEEE--EecCCCEEEEecCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK--------------MLYHQGPVSALA--FHPNGHLMATTGKECK  132 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~--------------~~~h~~~v~~l~--~~p~g~~l~s~~~d~~  132 (359)
                      .|..|...|+-+.+++-+ |+.++++++.+-.....              -......+...+  -...+...+++.....
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            688888888766655554 59999999875443331              112233344444  1223444444445558


Q ss_pred             EEEEEcCCC-----eeeEee--cCCceeEEEcCCCcEEEEcCCcEEEEcCCCC
Q 040274          133 IKIWDLRKY-----EVLQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       133 i~vwd~~~~-----~~~~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~  178 (359)
                      |.+|.....     ..+..+  +..+.+++|.++.++ .+..+...+.|+.++
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~-v~~~~~f~~idl~~~  167 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKIC-VGTSKGFYLIDLNTG  167 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEE-EEeCCceEEEecCCC
Confidence            888876542     345555  677899999955444 444556778886543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.87  E-value=0.23  Score=41.95  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=40.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCC-CCeEEEEEecCCCEEEEe--cCCCeEEEEEcC
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-GPVSALAFHPNGHLMATT--GKECKIKIWDLR  139 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~p~g~~l~s~--~~d~~i~vwd~~  139 (359)
                      ++.+..+++.||.|+.|++.-.+.+...-.|+ .++..+..+..+.+++.+  |.|..++.|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            45678889999999999998777666655666 444444444444455554  555555555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.69  E-value=0.44  Score=40.80  Aligned_cols=57  Identities=11%  Similarity=0.267  Sum_probs=37.6

Q ss_pred             EecCCCEEEEecCCCeEEEEEcCCCeeeEee-------c----------CCceeEEEcCCC--cEEEEcCCcEEEEc
Q 040274          117 FHPNGHLMATTGKECKIKIWDLRKYEVLQTL-------T----------GHAKTLDFSQKG--LLAVGTGSFAQILG  174 (359)
Q Consensus       117 ~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-------~----------~~v~~~~~s~~g--l~~~~~d~~i~v~d  174 (359)
                      +..++.+|++.+.+|.+++||+.+++++..-       .          ..|..+.++.+|  +++. .+|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence            4457889999999999999999987754332       1          224556666666  3333 335566665

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=3.6  Score=40.91  Aligned_cols=98  Identities=11%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe--e
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT--L  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~--~  147 (359)
                      ..++..+|..-.=+. +.-..|+||++. |..+..+....+.+..+.|+.+. .|++...||++++|++-. ..+..  .
T Consensus        46 pIAV~r~p~~~~~~~-~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~sv  121 (829)
T KOG2280|consen   46 PIAVTRSPSKLVPLY-SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSV  121 (829)
T ss_pred             ceEEEeccccccccc-ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhccccc
Confidence            445555553321111 334568888865 67776666556688999998876 566778999999999752 22222  1


Q ss_pred             -----cCCceeEEEcCCCcEEEEcCCcEE
Q 040274          148 -----TGHAKTLDFSQKGLLAVGTGSFAQ  171 (359)
Q Consensus       148 -----~~~v~~~~~s~~gl~~~~~d~~i~  171 (359)
                           ...|..+.+..+|+++-..+|.+.
T Consensus       122 g~e~~~~~I~ec~~f~~GVavlt~~g~v~  150 (829)
T KOG2280|consen  122 GFESQMSDIVECRFFHNGVAVLTVSGQVI  150 (829)
T ss_pred             ccccccCceeEEEEecCceEEEecCCcEE
Confidence                 223555556667744444444433

>PRK10115 protease 2; Provisional

Probab=93.26  E-value=5.5  Score=40.45  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=63.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC------CeEEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSG-G----TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE------CKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d-g----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd  137 (359)
                      .+..+.|+|++++|+.+... |    .|++.|+.++..+........  ..++|.+|+..|+.+..+      ..|++|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            57778899999988876532 3    588999988864433222222  569999998876655432      3688888


Q ss_pred             cCCC--ee--eEeec-CCce-eEEEcCCC--cEEEE---cCCcEEEEcC
Q 040274          138 LRKY--EV--LQTLT-GHAK-TLDFSQKG--LLAVG---TGSFAQILGD  175 (359)
Q Consensus       138 ~~~~--~~--~~~~~-~~v~-~~~~s~~g--l~~~~---~d~~i~v~d~  175 (359)
                      +.++  +.  +..-. .... .+..+.++  ++..+   .++.+.+|+.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8877  22  32222 2222 23334366  33222   2357888873

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.19  E-value=1.6  Score=40.26  Aligned_cols=86  Identities=7%  Similarity=-0.043  Sum_probs=44.6

Q ss_pred             EEEEcCCCCEEEEE-eCCC--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEe
Q 040274           72 LMRVNPFNGVVSLG-HSGG--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQT  146 (359)
Q Consensus        72 ~l~~sp~~~~l~tg-~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~  146 (359)
                      .=+|.++|+.|+.+ ..||  .+.+.|+.+++..+.-.+.........++|+.+.++-......|...|+.+++.  +..
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            34577888665554 4455  567778888875554433223333566788888887666667889999999765  444


Q ss_pred             ecC-CceeEEEc
Q 040274          147 LTG-HAKTLDFS  157 (359)
Q Consensus       147 ~~~-~v~~~~~s  157 (359)
                      ++. .+....|.
T Consensus       120 ~p~~~~g~gt~v  131 (386)
T PF14583_consen  120 VPDDWKGYGTWV  131 (386)
T ss_dssp             --TTEEEEEEEE
T ss_pred             CCccccccccee
Confidence            433 33345553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.04  E-value=0.36  Score=29.26  Aligned_cols=30  Identities=10%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             ceeEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q 040274           69 RTDLMRVNPFN---GVVSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        69 ~v~~l~~sp~~---~~l~tg~~dg~v~lwd~~~   98 (359)
                      .|.+|.|+|.+   .+|+.+-..|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=93.00  E-value=3.5  Score=40.49  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=33.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcceEEeec-CCCCeEEEEEecCCCEEEEecCC------CeEEEEEcCCCe
Q 040274           78 FNGVVSLGHSG-----GTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKE------CKIKIWDLRKYE  142 (359)
Q Consensus        78 ~~~~l~tg~~d-----g~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~~  142 (359)
                      ++.+++.|+.+     ..+..||+.+.+....-.. +...-.+++ .-++.+++.||.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            45566667654     3577888876543221111 111111222 2356677777732      458889987654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.93  E-value=1.6  Score=43.25  Aligned_cols=132  Identities=14%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCcceEEeec-CCCCeEEEEEecCCCEEEEecCC------CeEEEEEcCCCeee
Q 040274           78 FNGVVSLGHSG------GTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKE------CKIKIWDLRKYEVL  144 (359)
Q Consensus        78 ~~~~l~tg~~d------g~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~~~~  144 (359)
                      .+.+++.|+.+      ..|..||+.++........ +.....++++. ++.+.++||.|      .++..||.++.+-.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            34566667665      3688899887744332221 22223344443 45778888888      35888998876632


Q ss_pred             E--eecCCc--eeEEEcCCC--cEEEEcCC-----cEEEEcCCCCCccccccccccCCCCcceeEE-EEccCCCEEEEEe
Q 040274          145 Q--TLTGHA--KTLDFSQKG--LLAVGTGS-----FAQILGDFSGSHNYSRYMGNSMVKGYQIGKV-SFRPYEDVLGIGH  212 (359)
Q Consensus       145 ~--~~~~~v--~~~~~s~~g--l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~~g~  212 (359)
                      .  .+...-  ..++.. +|  ++.||.||     +|..||..+........+..      ...+. .-.-+|.+.++|+
T Consensus       363 ~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~~g~iYi~GG  435 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVLGGKLYIIGG  435 (571)
T ss_pred             ccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEECCEEEEEcC
Confidence            2  111111  122221 34  66666664     68889865543222221111      11111 2223778888888


Q ss_pred             CCCeE
Q 040274          213 SMGWS  217 (359)
Q Consensus       213 ~dg~~  217 (359)
                      .++..
T Consensus       436 ~~~~~  440 (571)
T KOG4441|consen  436 GDGSS  440 (571)
T ss_pred             cCCCc
Confidence            77765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.49  E-value=1.2  Score=36.58  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=25.6

Q ss_pred             ceeEEEEccCC------CEEEEEeCCCeEEEEEcCCC
Q 040274          195 QIGKVSFRPYE------DVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       195 ~v~~~~~sp~~------~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .|.+++|||-|      .+|++.+.+|.+.||.+...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            69999999944      46888899999999988754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.44  E-value=9  Score=39.47  Aligned_cols=145  Identities=10%  Similarity=0.069  Sum_probs=86.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCcceEEeec-CC---CCeEEEEEecC-CCEEEEecC
Q 040274           69 RTDLMRVNPFNGVVSLGHSG--------------GTVTMWKPTTSALLIKMLY-HQ---GPVSALAFHPN-GHLMATTGK  129 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d--------------g~v~lwd~~~~~~~~~~~~-h~---~~v~~l~~~p~-g~~l~s~~~  129 (359)
                      ....+++.+....+.+.+..              ..++++|.+|.+.+....- ..   -.+.++.|..| +.+++.|..
T Consensus       716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            56677777755445444321              1377888777654433221 11   23455557766 667776643


Q ss_pred             ----------CCeEEEEEcCCCee---eEee--cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCc
Q 040274          130 ----------ECKIKIWDLRKYEV---LQTL--TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY  194 (359)
Q Consensus       130 ----------d~~i~vwd~~~~~~---~~~~--~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  194 (359)
                                .|.|.+|.+..+..   ++..  .+.+.++..- +|.+.++-+..|++|+.... +....-..+.    .
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~In~~vrLye~t~~-~eLr~e~~~~----~  869 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGINQSVRLYEWTTE-RELRIECNIS----N  869 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEecCcEEEEEEcccc-ceehhhhccc----C
Confidence                      37788887766332   3322  4555555432 45566677889999996554 3333333332    2


Q ss_pred             ceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          195 QIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       195 ~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      ++..+...-.|+.+++|.--+.+.+
T Consensus       870 ~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  870 PIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             CeEEEEEEecCcEEEEeeccceEEE
Confidence            6788888888999999988777665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.36  E-value=6.2  Score=37.08  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----ceE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-----LLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-----~~~  103 (359)
                      +.+..++||.+++.+..                       .++.+.|.+++.+++++ .+|.+ +|....+.     ...
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~  319 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFE  319 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccccee
Confidence            55667788888887664                       56788888888877666 45554 34444443     122


Q ss_pred             Eeec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE------eecCCceeEEEcCCC-cEEEEcCCcEEEE
Q 040274          104 KMLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ------TLTGHAKTLDFSQKG-LLAVGTGSFAQIL  173 (359)
Q Consensus       104 ~~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~------~~~~~v~~~~~s~~g-l~~~~~d~~i~v~  173 (359)
                      ....  ....++++.|.+++..++ ++.+|.+.... ..|+.-.      .+..+.+.+.|.+++ .++.+.+|.|.-|
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            2211  123588899988876554 45667666653 3333312      224567899988877 7778888877655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.35  E-value=1.4  Score=41.33  Aligned_cols=42  Identities=10%  Similarity=0.076  Sum_probs=35.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG  110 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~  110 (359)
                      .+.+++.+|++.+.++...=|.|.++|+.++..+..++|-.+
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            577899999999988888889999999999988887776544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.33  E-value=0.69  Score=37.95  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             CCceeEEEcCCC--------cEEEEcCCcEEEEcC
Q 040274          149 GHAKTLDFSQKG--------LLAVGTGSFAQILGD  175 (359)
Q Consensus       149 ~~v~~~~~s~~g--------l~~~~~d~~i~v~d~  175 (359)
                      ..+.+++|||.|        |++.+.++.|.||..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            368999999976        555667899999973

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.18  E-value=3.9  Score=36.18  Aligned_cols=115  Identities=11%  Similarity=0.140  Sum_probs=75.7

Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----CCceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----GHAKTLDFSQKG-LLAVG-TGSFAQILGDFSGSH  180 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~  180 (359)
                      +-...|++++|+|+.+.|++......-.||=-..|+.+.+++    ...-.+.|..+| ++.+. .++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            445569999999999998888887777777556688888884    235678888888 44444 356777665433211


Q ss_pred             ccc------ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          181 NYS------RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       181 ~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ...      ++..... .......++|+|.+..|..+-+..-+.|+..
T Consensus       163 ~~~~~~~~i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         163 VISAKVQKIPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             EEeccceEEeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence            111      1111110 1234678999999988888877776666544

>PHA02713 hypothetical protein; Provisional

Probab=92.01  E-value=3.1  Score=41.12  Aligned_cols=65  Identities=9%  Similarity=0.001  Sum_probs=35.3

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC-----eEEEEEcCCCe
Q 040274           78 FNGVVSLGHSG------GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC-----KIKIWDLRKYE  142 (359)
Q Consensus        78 ~~~~l~tg~~d------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~-----~i~vwd~~~~~  142 (359)
                      ++.+++.|+.+      ..|..||+.+......-.............-+|.+.+.||.++     .+..||..+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            45566777753      3477888877643211111111111111223677778887654     48889988654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.98  E-value=12  Score=35.82  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=39.4

Q ss_pred             EEEeccceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEee-----cCCCCeEEEEEecCC
Q 040274           63 MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--LIKML-----YHQGPVSALAFHPNG  121 (359)
Q Consensus        63 l~~~~~~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--~~~~~-----~h~~~v~~l~~~p~g  121 (359)
                      ++++-...+.|+|.|++.+|++--..|.|++++..++..  +..+.     ...+....|+++|+-
T Consensus        25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            333334788999999998777765569999998665432  21111     125668899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.92  E-value=9.9  Score=34.80  Aligned_cols=96  Identities=22%  Similarity=0.311  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceEEe----ecCCCCeEEEEEecC----CCEEEEecCC--------C
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--LLIKM----LYHQGPVSALAFHPN----GHLMATTGKE--------C  131 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--~~~~~----~~h~~~v~~l~~~p~----g~~l~s~~~d--------~  131 (359)
                      .++|+|.|+|.+|++ ...|.|.+++.....  .+..+    .........++++|+    +.+.++.+..        .
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            468999999877665 558999999833222  12222    133456799999994    4333333321        2


Q ss_pred             eEEEEEcCCC-------eee-EeecC-----C-ceeEEEcCCC--cEEEEc
Q 040274          132 KIKIWDLRKY-------EVL-QTLTG-----H-AKTLDFSQKG--LLAVGT  166 (359)
Q Consensus       132 ~i~vwd~~~~-------~~~-~~~~~-----~-v~~~~~s~~g--l~~~~~  166 (359)
                      .|.-|.....       +.+ ..++.     | ...|.|.|+|  +++.+.
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            3554544332       111 11121     2 3679999999  455543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.85  E-value=8.4  Score=33.86  Aligned_cols=164  Identities=13%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--  106 (359)
                      |+++.+|||..-.++..                       .-+.+...||+..-++-+.. .|.-.|..+.+. ..|.  
T Consensus        65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~lp  142 (353)
T COG4257          65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPLP  142 (353)
T ss_pred             cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeecc
Confidence            99999999976665443                       44555566665543333222 444445544432 2221  


Q ss_pred             --cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          107 --YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       107 --~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                        ..........|.+.|++-+|+.. |.---.|..+ ..+..|+    ...+.||..|+|  +++.-.++.|-..|....
T Consensus       143 ~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         143 LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence              23456778889999998888753 1111111111 1233331    235889999999  444445677777775544


Q ss_pred             CccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          179 SHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ..........   ....-..+--+|.|..-++....+.+..+.+
T Consensus       221 ~aev~p~P~~---~~~gsRriwsdpig~~wittwg~g~l~rfdP  261 (353)
T COG4257         221 HAEVVPQPNA---LKAGSRRIWSDPIGRAWITTWGTGSLHRFDP  261 (353)
T ss_pred             CcceecCCCc---ccccccccccCccCcEEEeccCCceeeEeCc
Confidence            2222221111   0112344555677777777666666655554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.57  E-value=8.9  Score=33.61  Aligned_cols=120  Identities=14%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             EeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--------CCceeEEE
Q 040274           85 GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--------GHAKTLDF  156 (359)
Q Consensus        85 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~v~~~~~  156 (359)
                      .-.++...+||..+.+.+..+.- .+.=+.++  .+|..|+.+.....|+++|..+.+.+..+.        ..++-+.|
T Consensus       106 TWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred             EecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence            33578899999999888888754 34456776  467778887778899999998887766661        12456666


Q ss_pred             cCCC-cEEEEc-CCcEEEEcCCCCCcccccc-----cc------ccCCCCcceeEEEEccCCCEEE
Q 040274          157 SQKG-LLAVGT-GSFAQILGDFSGSHNYSRY-----MG------NSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       157 s~~g-l~~~~~-d~~i~v~d~~~~~~~~~~~-----~~------~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      - +| +++--+ ...|...|..++ .....+     ..      ...+...-.+.++|.|..+.|.
T Consensus       183 i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~  246 (264)
T PF05096_consen  183 I-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF  246 (264)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred             E-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence            5 55 444333 455666664443 222111     00      0000123578899999876443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.55  E-value=11  Score=37.94  Aligned_cols=99  Identities=13%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             CCCEEEEecCCCeEEEEEcCC-------C-------------eeeEee--cCCceeEEEc--CCC-cEEEEcC-CcEEEE
Q 040274          120 NGHLMATTGKECKIKIWDLRK-------Y-------------EVLQTL--TGHAKTLDFS--QKG-LLAVGTG-SFAQIL  173 (359)
Q Consensus       120 ~g~~l~s~~~d~~i~vwd~~~-------~-------------~~~~~~--~~~v~~~~~s--~~g-l~~~~~d-~~i~v~  173 (359)
                      +...|+.|..||.|.+|.+.+       .             ++...+  ...+++++++  ... ++++|.+ ..|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            445788899999999996521       1             011111  4467899988  555 6666654 566665


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCC---C---EEEEEeCCCeEEEE
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE---D---VLGIGHSMGWSGIL  220 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~g~~dg~~~i~  220 (359)
                      -.............+.  +...|.+|+|.++.   .   +|++++-.|.+.+|
T Consensus       193 af~l~~~r~~~~~s~~--~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQ--HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             EEeccccccccccccc--cccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            4322111111111221  23368999998854   2   77788888876653

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.33  E-value=1.4  Score=37.55  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=41.2

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEe
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFH  118 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~  118 (359)
                      -.|++..+|.+.+++-+.|+|...|+.+|+.+..+.-.+..|+|++|-
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            345556678888888888999999999999999999889999999994

>PHA02790 Kelch-like protein; Provisional

Probab=91.12  E-value=5.7  Score=38.47  Aligned_cols=130  Identities=12%  Similarity=-0.032  Sum_probs=59.0

Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC---eEEEEEcCCCeeeE--eecCC
Q 040274           78 FNGVVSLGHSG--GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC---KIKIWDLRKYEVLQ--TLTGH  150 (359)
Q Consensus        78 ~~~~l~tg~~d--g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~---~i~vwd~~~~~~~~--~~~~~  150 (359)
                      +|.+.+.|+.+  .++..||+.+++....-.............-+|.+.+.||.++   .+..||..+..-..  ..+.+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            44555666643  3578888776533221111111111111223677777777653   47788887654322  11111


Q ss_pred             c-eeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          151 A-KTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       151 v-~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      . ...+..-+| +++.|  |.+.+||..+.......-+..   +..... ++ .-+|.+.++|+.+
T Consensus       398 r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~---~r~~~~-~~-v~~~~IYviGG~~  456 (480)
T PHA02790        398 HYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIY---PRDNPE-LI-IVDNKLLLIGGFY  456 (480)
T ss_pred             cccceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCC---CccccE-EE-EECCEEEEECCcC
Confidence            1 111222345 44433  457888865543222111111   111121 22 2367777777765

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.90  E-value=3.8  Score=34.37  Aligned_cols=98  Identities=15%  Similarity=0.046  Sum_probs=57.0

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCCCeeeEee--cCCce
Q 040274           78 FNGVVSLGHS--GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT-TGKECKIKIWDLRKYEVLQTL--TGHAK  152 (359)
Q Consensus        78 ~~~~l~tg~~--dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~~~~~~~~--~~~v~  152 (359)
                      +|.++.+.+.  ...|++||+.+++.+.+-.-....+..-....-|.++.. .-.+|.-.++|.++.+++..+  ++.-+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            3445555543  346999999999877654422222222222122333332 346788999999998887766  55566


Q ss_pred             eEEEcCCCcEEEEcCCcEEEEcC
Q 040274          153 TLDFSQKGLLAVGTGSFAQILGD  175 (359)
Q Consensus       153 ~~~~s~~gl~~~~~d~~i~v~d~  175 (359)
                      .++.....++.+....+++.-|.
T Consensus       135 gLt~d~~~LimsdGsatL~frdP  157 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDP  157 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCH
Confidence            66654444655555556665553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.89  E-value=3  Score=40.89  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      -|.|.-+|+.+++.+..+........+. +.-.+.+++.++.||.++.+|..+|+.+..+.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence            3678999999998887765322212222 11245577778889999999999999988873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.67  E-value=1.1  Score=44.06  Aligned_cols=71  Identities=14%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCC----CcceEE-ee-c--------------------CCCCeEEEEEec----CCCEEEE
Q 040274           77 PFNGVVSLGHSGGTVTMWKPTT----SALLIK-ML-Y--------------------HQGPVSALAFHP----NGHLMAT  126 (359)
Q Consensus        77 p~~~~l~tg~~dg~v~lwd~~~----~~~~~~-~~-~--------------------h~~~v~~l~~~p----~g~~l~s  126 (359)
                      ++...++.+..||.+.......    +..... .. .                    ..+.+.++++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4566777778888877766543    111110 00 0                    123456666666    6789999


Q ss_pred             ecCCCeEEEEEcCCCeeeEee
Q 040274          127 TGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus       127 ~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+.|+++++||+.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.20  E-value=10  Score=32.01  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--cceEEeecCCCCeEEEEEecCCCEEEEecCC---C---eEEEE---EcC--CCeeeE-
Q 040274           80 GVVSLGHSGGTVTMWKPTTS--ALLIKMLYHQGPVSALAFHPNGHLMATTGKE---C---KIKIW---DLR--KYEVLQ-  145 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d---~---~i~vw---d~~--~~~~~~-  145 (359)
                      ..|+.+...+.|.+|++.+.  .++..|.. -+.|..+.++..|.|++|--.+   .   .+++|   +..  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            34444455678999998833  44555644 5889999999999999996432   2   56665   221  011111 


Q ss_pred             ----------------------ee--cCCceeEEEcCC-CcEEEEcCCcEEEEcCC
Q 040274          146 ----------------------TL--TGHAKTLDFSQK-GLLAVGTGSFAQILGDF  176 (359)
Q Consensus       146 ----------------------~~--~~~v~~~~~s~~-gl~~~~~d~~i~v~d~~  176 (359)
                                            .+  ..++.+++..|- |=+.++.++.+.+|.+.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~  163 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLK  163 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence                                  11  234577777774 44555667788888753

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.09  E-value=17  Score=34.29  Aligned_cols=145  Identities=12%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             cCCCCEEEEEe--CC----CeEEEEeCCCCcceEEeecC---CCCeEEEEEecCCCEEEEecC-----------------
Q 040274           76 NPFNGVVSLGH--SG----GTVTMWKPTTSALLIKMLYH---QGPVSALAFHPNGHLMATTGK-----------------  129 (359)
Q Consensus        76 sp~~~~l~tg~--~d----g~v~lwd~~~~~~~~~~~~h---~~~v~~l~~~p~g~~l~s~~~-----------------  129 (359)
                      -|+|.+++++-  .+    |.+.++|-.+..........   ...-+.+-|.|..+.++|+..                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            46787777743  22    46888888877776665532   233467778898888988743                 


Q ss_pred             ---CCeEEEEEcCCCeeeEeec----C-CceeEEEcC--CC---cEEEEcCCcEEEEcC-CCCCcc---ccccc------
Q 040274          130 ---ECKIKIWDLRKYEVLQTLT----G-HAKTLDFSQ--KG---LLAVGTGSFAQILGD-FSGSHN---YSRYM------  186 (359)
Q Consensus       130 ---d~~i~vwd~~~~~~~~~~~----~-~v~~~~~s~--~g---l~~~~~d~~i~v~d~-~~~~~~---~~~~~------  186 (359)
                         -.++.+||+.+.+.++++.    + -+..+.|..  +.   ++.+...++|..|-- ..+...   +..+.      
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               2579999999999999982    1 244566644  33   676666666666542 111110   00010      


Q ss_pred             --------cccCCCCcceeEEEEccCCCEEEEEeC-CCeEEEEE
Q 040274          187 --------GNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSGILV  221 (359)
Q Consensus       187 --------~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~  221 (359)
                              .... ...-|+.+..|.|.++|.+++. .|.++-|.
T Consensus       298 ~~lp~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD  340 (461)
T PF05694_consen  298 WILPEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYD  340 (461)
T ss_dssp             S---GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred             cccccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence                    0000 0125899999999999876654 56555543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.00  E-value=4.3  Score=37.15  Aligned_cols=46  Identities=20%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEEcCCCee---eEee-------cCCceeEEEcCC
Q 040274          112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEV---LQTL-------TGHAKTLDFSQK  159 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---~~~~-------~~~v~~~~~s~~  159 (359)
                      -++|+|.|||.+|++ ...|.|.+++ ..+..   +..+       ......++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            478999999988776 4599999999 33432   2222       123588999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13615 lipoprotein LpqB; Provisional

Probab=89.62  E-value=9.7  Score=37.42  Aligned_cols=96  Identities=6%  Similarity=-0.068  Sum_probs=60.3

Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC-CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccC
Q 040274          113 SALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG-HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSM  190 (359)
Q Consensus       113 ~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  190 (359)
                      .+++.++++..++....++.+.++... +.....+.+ .++.-.|+++| +.++..+....+......+... .....-.
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g~vWtv~~g~~~~l~~~~~~G~~~-~v~v~~~  414 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQGYVWSTPASDPRGLVAWGPDGVGH-PVAVSWT  414 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCCCEEEEeCCCceEEEEecCCCceE-Eeecccc
Confidence            788999999999988888888888665 222223334 37888899999 6665554444544322222221 1111111


Q ss_pred             CCCcceeEEEEccCCCEEEEE
Q 040274          191 VKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       191 ~~~~~v~~~~~sp~~~~l~~g  211 (359)
                       .+..|..+..|+||-.++.-
T Consensus       415 -~~~~I~~lrvSrDG~R~Avi  434 (557)
T PRK13615        415 -ATGRVVSLEVARDGARVLVQ  434 (557)
T ss_pred             -CCCeeEEEEeCCCccEEEEE
Confidence             33479999999999776654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.96  E-value=2.4  Score=25.06  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=25.8

Q ss_pred             cCCCEEEEec-CCCeEEEEEcCCCeeeEeec--CCceeEEE
Q 040274          119 PNGHLMATTG-KECKIKIWDLRKYEVLQTLT--GHAKTLDF  156 (359)
Q Consensus       119 p~g~~l~s~~-~d~~i~vwd~~~~~~~~~~~--~~v~~~~~  156 (359)
                      |+++.|+++. .++.|.++|..++..+..+.  .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5667655544 57899999998888777762  23455554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.86  E-value=5.2  Score=38.12  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=64.0

Q ss_pred             EEEEcCCCC-------EEEEEeCCCeEEEEeCCCCc-ceEEeecCCCCeEEEEEec----CCCEEEEecCCCeEEEEEcC
Q 040274           72 LMRVNPFNG-------VVSLGHSGGTVTMWKPTTSA-LLIKMLYHQGPVSALAFHP----NGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        72 ~l~~sp~~~-------~l~tg~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~l~~~p----~g~~l~s~~~d~~i~vwd~~  139 (359)
                      -+.|+|+..       .-+.|-.+..|.-.|++... .+.... ....++--.|+.    ...|+|.+|..|.|++||.-
T Consensus       513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi  591 (776)
T COG5167         513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI  591 (776)
T ss_pred             eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhh
Confidence            667777653       23456667778777877432 222111 112222222222    34489999999999999964


Q ss_pred             C---CeeeEeecCCceeEEEcCCC-cEEEEcCCcEEEEcCC
Q 040274          140 K---YEVLQTLTGHAKTLDFSQKG-LLAVGTGSFAQILGDF  176 (359)
Q Consensus       140 ~---~~~~~~~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~  176 (359)
                      .   ...+..+...|-.+..+.+| .+.+.....+.+.|+.
T Consensus       592 g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         592 GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            3   23344445668888999999 6666666778887754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.83  E-value=13  Score=38.16  Aligned_cols=69  Identities=7%  Similarity=0.039  Sum_probs=50.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC--------eEEEEEec----------------CCCEEEEecCCCeEE
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP--------VSALAFHP----------------NGHLMATTGKECKIK  134 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~--------v~~l~~~p----------------~g~~l~s~~~d~~i~  134 (359)
                      +..|+.++.++.|.-.|..||+.+..+......        ...+++..                ++..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888899999999999988877643211        12233321                234788888999999


Q ss_pred             EEEcCCCeeeEee
Q 040274          135 IWDLRKYEVLQTL  147 (359)
Q Consensus       135 vwd~~~~~~~~~~  147 (359)
                      -.|..+|+.+..+
T Consensus       274 ALDA~TGk~~W~f  286 (764)
T TIGR03074       274 ALDADTGKLCEDF  286 (764)
T ss_pred             EEECCCCCEEEEe
Confidence            9999999988766

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.50  E-value=5.5  Score=35.87  Aligned_cols=71  Identities=7%  Similarity=0.186  Sum_probs=52.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCe-----EEEEEecCCCEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPV-----SALAFHPNGHLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v-----~~l~~~p~g~~l~s~~~d~~i~vwd~~  139 (359)
                      .++++...++|.+|++.-.-.+|.+.|..+++.+..+.+....-     ...+|-.+-+++-.+..+++|.++|=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            78899888899999999888899999999999988886652211     123444455555566778889999863

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.36  E-value=0.43  Score=48.02  Aligned_cols=66  Identities=14%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEE-----------EecCCCEEEEecCCCeEEEEEc
Q 040274           72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALA-----------FHPNGHLMATTGKECKIKIWDL  138 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~-----------~~p~g~~l~s~~~d~~i~vwd~  138 (359)
                      .+-|-++..++.++..++.|++..+++... ..+.+|...++.++           .+|||..|++++.||.+..|.+
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            333444566788888889998877765422 33445665554433           5677777777777777777754

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.34  E-value=16  Score=39.03  Aligned_cols=147  Identities=9%  Similarity=0.063  Sum_probs=84.9

Q ss_pred             eCCCeEEEEeCCCCcceEEeecCCCCeEEEEE--------ecCCCEEEEecCCCeEEEEEcC----CCee---e--Eee-
Q 040274           86 HSGGTVTMWKPTTSALLIKMLYHQGPVSALAF--------HPNGHLMATTGKECKIKIWDLR----KYEV---L--QTL-  147 (359)
Q Consensus        86 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~--------~p~g~~l~s~~~d~~i~vwd~~----~~~~---~--~~~-  147 (359)
                      +.|..+.+|+.+++.....+.+-...|..+..        .|.=.+++..+.--.|.++-+.    ++..   .  .++ 
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45789999999987666666655555555543        2233344444444445555332    1111   1  111 


Q ss_pred             --cCCceeEEEcCCC-cEEEEcCCcEE--EEcCCCC---C-------------ccccccccccCCCCcceeEEEEccCCC
Q 040274          148 --TGHAKTLDFSQKG-LLAVGTGSFAQ--ILGDFSG---S-------------HNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       148 --~~~v~~~~~s~~g-l~~~~~d~~i~--v~d~~~~---~-------------~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                        ...|+|+....+| ++.+|.||.|+  +|....+   .             ..+..+....+.+..+|..+.....-.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence              2347888888899 77777777443  2221111   0             000111111111345789999988888


Q ss_pred             EEEEEeCCCeEEEEEcCC-CCCceeee
Q 040274          207 VLGIGHSMGWSGILVPRS-SEPNFDSW  232 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~gs-~~~~~~~~  232 (359)
                      +|.+-+..|.+++|+.+. |.+..+..
T Consensus       256 IlY~lsek~~v~~Y~i~~~G~~~~r~~  282 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGGNGLGGPRFV  282 (1311)
T ss_pred             eeeeeccCceEEEEEccCCCccceeee
Confidence            999999999999998876 54444444

>PHA02790 Kelch-like protein; Provisional

Probab=88.23  E-value=9.8  Score=36.83  Aligned_cols=98  Identities=12%  Similarity=0.032  Sum_probs=50.0

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCcceE--EeecCCCCeEEEEEecCCCEEEEecCC--CeEEEEEcCCCee--eEe
Q 040274           78 FNGVVSLGHSGG-----TVTMWKPTTSALLI--KMLYHQGPVSALAFHPNGHLMATTGKE--CKIKIWDLRKYEV--LQT  146 (359)
Q Consensus        78 ~~~~l~tg~~dg-----~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~p~g~~l~s~~~d--~~i~vwd~~~~~~--~~~  146 (359)
                      ++.++++|+.++     ++..||+.+.....  .+.........+  .-+|.+.+.||.+  ..+..||..++.-  +..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            345667777543     57788988764322  121111111222  2367777777754  3578888765432  222


Q ss_pred             ecCCc--eeEEEcCCC--cEEEEcC---CcEEEEcCCCC
Q 040274          147 LTGHA--KTLDFSQKG--LLAVGTG---SFAQILGDFSG  178 (359)
Q Consensus       147 ~~~~v--~~~~~s~~g--l~~~~~d---~~i~v~d~~~~  178 (359)
                      ++.+.  .+++ .-+|  ++.||.+   ..+..||..+.
T Consensus       349 l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        349 LLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence            22121  1222 2245  5555544   35778886544

>PHA03098 kelch-like protein; Provisional

Probab=88.06  E-value=9.3  Score=37.49  Aligned_cols=98  Identities=10%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC-----CeEEEEEcCCCeee
Q 040274           78 FNGVVSLGHSGG------TVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE-----CKIKIWDLRKYEVL  144 (359)
Q Consensus        78 ~~~~l~tg~~dg------~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~~~~  144 (359)
                      ++.+++.|+.++      .+..||+.+.+....  +.........+  .-++.+++.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            445666676542      577888877654221  11111111222  2356777778765     34778888765422


Q ss_pred             --EeecCCc--eeEEEcCCC--cEEEEcC------CcEEEEcCCCC
Q 040274          145 --QTLTGHA--KTLDFSQKG--LLAVGTG------SFAQILGDFSG  178 (359)
Q Consensus       145 --~~~~~~v--~~~~~s~~g--l~~~~~d------~~i~v~d~~~~  178 (359)
                        ..++.+.  .+++.. ++  ++.||.+      +.+..||+.+.
T Consensus       372 ~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             eCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCC
Confidence              1121111  122222 34  5555532      45788886544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.04  E-value=0.071  Score=49.81  Aligned_cols=118  Identities=13%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             hccceEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCE-EEEEeCCCeEEEEeCCCCcceEEe
Q 040274           48 NLVHILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGV-VSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        48 ll~~~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~-l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      +.......|.|.+..++.++.                     ....|+|.-++.. ++.+...+.+.+||+++......-
T Consensus        34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             ccccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            333467777776666666554                     5677888887664 455677899999999864321111


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEE
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVG  165 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~  165 (359)
                      .+....-.-+.|++.+..++.+...|++.+++..+...+...   ...+++++|.+.+ .+.++
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            122222223788998888999989999999998765443332   2346778888777 33333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.03  E-value=9.4  Score=38.43  Aligned_cols=106  Identities=12%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCC-------C-------------cceEEeecCCCCeEEEEEe--cCCCEE
Q 040274           69 RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTT-------S-------------ALLIKMLYHQGPVSALAFH--PNGHLM  124 (359)
Q Consensus        69 ~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~--p~g~~l  124 (359)
                      .|+.|....  ...+|+.|..||.|.+|.+.+       .             +|-..+. -...+++++++  ...+++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            466666655  335788999999999996521       0             1122222 23468999998  788889


Q ss_pred             EEecCCCeEEEEEcCCC--ee--e--EeecCCceeEEEcCC-----C---cEEEEcCCcEEEEcC
Q 040274          125 ATTGKECKIKIWDLRKY--EV--L--QTLTGHAKTLDFSQK-----G---LLAVGTGSFAQILGD  175 (359)
Q Consensus       125 ~s~~~d~~i~vwd~~~~--~~--~--~~~~~~v~~~~~s~~-----g---l~~~~~d~~i~v~d~  175 (359)
                      |.++....|.||-+...  +.  .  ......|.+|+|-++     |   +++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99988888888755431  11  1  112334788888653     3   445666798888875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.98  E-value=11  Score=29.31  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=42.8

Q ss_pred             EEEecCCCEEEEecCCCeEEEEEcCCC--------eeeEee--cCCceeEEEcC---CC---cEEEEcCCcEEEEcCCCC
Q 040274          115 LAFHPNGHLMATTGKECKIKIWDLRKY--------EVLQTL--TGHAKTLDFSQ---KG---LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       115 l~~~p~g~~l~s~~~d~~i~vwd~~~~--------~~~~~~--~~~v~~~~~s~---~g---l~~~~~d~~i~v~d~~~~  178 (359)
                      -.|......|++++.-|.|.|++....        ..+..+  ...|++++-.+   +.   ++..++..++..||+...
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            455555667888888899999986532        223333  45566665433   32   777788889999998665

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.98  E-value=1.4  Score=43.75  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEeecCCceeEEEcCCCcEEEEcCCcEEEEc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTLTGHAKTLDFSQKGLLAVGTGSFAQILG  174 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~v~~~~~s~~gl~~~~~d~~i~v~d  174 (359)
                      ...++++.-+|.|..++++..||.|.+|+......  +.+...+...+.|...|+++..+|..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence            34567888889999999999999999998765433  4444556678889888988888888877775

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.88  E-value=2  Score=42.98  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=60.1

Q ss_pred             eEEEEEecCCCEEEEecCCCe-----EEEEEcC---CCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 040274          112 VSALAFHPNGHLMATTGKECK-----IKIWDLR---KYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~-----i~vwd~~---~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~  180 (359)
                      -+-++|-|+|..++|-+.||.     |.++..+   -|+.-...  ...+..++|+-.. .++.+..+.|.+|-..+   
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkN---  325 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKN---  325 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccc---
Confidence            345899999999999886652     4444432   22221111  2345778887777 77888889999996422   


Q ss_pred             cccccccccCCCCcceeEEEEccCCCE-EEEEeCCCeEEE
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSGI  219 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~g~~dg~~~i  219 (359)
                       ..-|..... .-..+.-+.|+|.... |+....+.+..+
T Consensus       326 -yhWYLK~e~-~ip~~s~vkwhpe~~nTl~f~d~~~I~~V  363 (1243)
T COG5290         326 -YHWYLKVER-QIPGISYVKWHPEEKNTLLFRDGERILRV  363 (1243)
T ss_pred             -eEEEEEEee-cCCCcceeeeccccCcEEEEecCCeEEEE
Confidence             222222211 1124677899997644 444333433344

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=87.62  E-value=20  Score=35.16  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCC-CCeE----------EEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-GPVS----------ALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~----------~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +..|++++.++.|.-.|..+|+.+..+.... ..+.          .+++  .+..++.++.|+.|.-.|..+|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            5577778888899999999999888765321 1111          1122  2346777888999999999999988766


Q ss_pred             cC--Cc--eeEEEcC---CC-cEEEEc------CCcEEEEcCCCC
Q 040274          148 TG--HA--KTLDFSQ---KG-LLAVGT------GSFAQILGDFSG  178 (359)
Q Consensus       148 ~~--~v--~~~~~s~---~g-l~~~~~------d~~i~v~d~~~~  178 (359)
                      ..  ..  ..+.-+|   ++ ++.++.      +|.|..+|..++
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG  191 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG  191 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence            21  10  1111122   34 444332      577888886555

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.38  E-value=22  Score=33.98  Aligned_cols=51  Identities=24%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--eeEee--------cCCceeEEEcCC
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--VLQTL--------TGHAKTLDFSQK  159 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--~~~~~--------~~~v~~~~~s~~  159 (359)
                      -..-+.|+|.|||++|++--..|.|++++..++.  .+..+        .+....|+++|+
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            4456889999999888776557999999865442  22222        234678999887

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.17  E-value=8.8  Score=38.35  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccc-ccccCCCCcceeEEEEccC
Q 040274          130 ECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRY-MGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       130 d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~  204 (359)
                      -..|+||++. |..+..+   .+.+-.+.|+.+. +++...+|+++||++...  ....+ .+... ....|..+.|..+
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge--~ie~~svg~e~-~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE--FIESNSVGFES-QMSDIVECRFFHN  138 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh--hhccccccccc-ccCceeEEEEecC
Confidence            3457788764 6665555   4578899999999 999999999999996432  22221 11111 2224555555555


Q ss_pred             CCEEEEEe
Q 040274          205 EDVLGIGH  212 (359)
Q Consensus       205 ~~~l~~g~  212 (359)
                      |-.+++.+
T Consensus       139 GVavlt~~  146 (829)
T KOG2280|consen  139 GVAVLTVS  146 (829)
T ss_pred             ceEEEecC
Confidence            54444433

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=87.11  E-value=10  Score=34.03  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=39.8

Q ss_pred             CCCEEEEeccceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe
Q 040274           59 SGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT  127 (359)
Q Consensus        59 dg~~l~~~~~~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~  127 (359)
                      +++.++.|-....+..|+ +|++.++-+..|.|..+|.++|........ .+...+++|.  |.+++++
T Consensus       194 s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v-pG~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       194 SGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL-PGFTRGLAFA--GDFAFVG  258 (335)
T ss_pred             CCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC-CCCCccccee--CCEEEEE
Confidence            334444443334444444 466667777788999999887754443322 4566788887  7777665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK13615 lipoprotein LpqB; Provisional

Probab=86.47  E-value=17  Score=35.74  Aligned_cols=136  Identities=10%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC-CCeeeEe-e-
Q 040274           71 DLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR-KYEVLQT-L-  147 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~-~~~~~~~-~-  147 (359)
                      .+++.++++..++....++.+.++.... .....+  ....++..+|.++| .+-+...+....+.... ++..... . 
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~  412 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS  412 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCC-cceeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence            6778999999988887788888876552 222222  13346777888887 55554443334444432 2333211 1 


Q ss_pred             ---cCCceeEEEcCCC--cEEEE---cCCcEEEEcCCCCCc---cc--cccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          148 ---TGHAKTLDFSQKG--LLAVG---TGSFAQILGDFSGSH---NY--SRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       148 ---~~~v~~~~~s~~g--l~~~~---~d~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                         .+.|+.+..|+||  ++...   ..+.|+|--+...+.   .+  ....--.. .+ .+.++.|..++.+.+.+.
T Consensus       413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~-~v~sl~W~~~~~laVl~~  488 (557)
T PRK13615        413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PG-TPLDATWVDELDVATLTL  488 (557)
T ss_pred             ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cC-cceeeEEcCCCEEEEEec
Confidence               3569999999999  22222   235566543332212   11  11111001 22 689999999998877663

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.38  E-value=0.93  Score=45.80  Aligned_cols=70  Identities=23%  Similarity=0.270  Sum_probs=45.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCC-CC----cceEEeecCC-CCeEEEEEecCC---------CEEEEec-CCCeEEEEEc
Q 040274           75 VNPFNGVVSLGHSGGTVTMWKPT-TS----ALLIKMLYHQ-GPVSALAFHPNG---------HLMATTG-KECKIKIWDL  138 (359)
Q Consensus        75 ~sp~~~~l~tg~~dg~v~lwd~~-~~----~~~~~~~~h~-~~v~~l~~~p~g---------~~l~s~~-~d~~i~vwd~  138 (359)
                      .||||..|++++.||.|..|.+. +|    .++.....|. .+-.|.-|+.+.         .++++++ ...-+++|.-
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            79999999999999999988764 22    3455555666 333333343321         1344444 3456889988


Q ss_pred             CCCeee
Q 040274          139 RKYEVL  144 (359)
Q Consensus       139 ~~~~~~  144 (359)
                      ...+|+
T Consensus       323 a~w~Cl  328 (1283)
T KOG1916|consen  323 APWQCL  328 (1283)
T ss_pred             cchhhh
Confidence            777776

>PRK13614 lipoprotein LpqB; Provisional

Probab=86.34  E-value=28  Score=34.46  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             EeCCCeEEEEeCCCCcceEEeecCCC-CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-ecC-CceeEEEcCCC-
Q 040274           85 GHSGGTVTMWKPTTSALLIKMLYHQG-PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-LTG-HAKTLDFSQKG-  160 (359)
Q Consensus        85 g~~dg~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-~~~-~v~~~~~s~~g-  160 (359)
                      +-.+|.+...+-..-.++.-..+..+ .+.+++.++++..++..+.|+. .+|-...+..... +.+ .++.-.|+++| 
T Consensus       317 ~~~~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g~  395 (573)
T PRK13614        317 GVSDGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQDW  395 (573)
T ss_pred             EecCCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCCC
Confidence            33466665544333334444444433 6788899999999888877772 3332222333322 333 46888999999 


Q ss_pred             cEEEEcCC--cEEEEcCCCCCccc----cccccccCCCCcceeEEEEccCCCEEEE-EeCCCe
Q 040274          161 LLAVGTGS--FAQILGDFSGSHNY----SRYMGNSMVKGYQIGKVSFRPYEDVLGI-GHSMGW  216 (359)
Q Consensus       161 l~~~~~d~--~i~v~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~-g~~dg~  216 (359)
                      +.++..++  .|..+.....+...    ...... ...+..|..+..|+||-.++. .+.+|.
T Consensus       396 vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~-~l~g~~I~~lrvSrDG~R~Avi~~~~g~  457 (573)
T PRK13614        396 VWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTAD-WLAGRTVKELRVSREGVRALVISEQNGK  457 (573)
T ss_pred             EEEeeCCCCceEEEEecCCCcccccccceeeccc-ccCCCeeEEEEECCCccEEEEEEEeCCc
Confidence            66655544  55544422111100    011111 112335999999999966554 444554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.22  E-value=4.4  Score=23.83  Aligned_cols=31  Identities=13%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCCCcceEEeec
Q 040274           77 PFNGVVSLGH-SGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        77 p~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      |+++.|+++. .+++|.++|+.++..+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5666665554 578999999988887777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13614 lipoprotein LpqB; Provisional

Probab=85.00  E-value=27  Score=34.58  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=76.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC--eEEEEEcC-CCee--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC--KIKIWDLR-KYEV--  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~--~i~vwd~~-~~~~--  143 (359)
                      .+.+++.++++..++....++. .+|-...+.....+.. ...++.-+|.++| .+-+...+.  .|..+.-. ++..  
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~-g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTS-GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeec-CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence            5677889999998888877762 3343222333322222 3346778888887 555554433  44444321 1111  


Q ss_pred             --eEe-----ecC-CceeEEEcCCC---cEEEEcCCc--EEEEcCCC--CCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          144 --LQT-----LTG-HAKTLDFSQKG---LLAVGTGSF--AQILGDFS--GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       144 --~~~-----~~~-~v~~~~~s~~g---l~~~~~d~~--i~v~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                        +..     +.+ .|+.+..|+||   .+....+|.  |+|--+..  .+................+.++.|..++.++
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~  500 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVV  500 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEE
Confidence              111     134 49999999999   333334554  65533222  1121111111110012368999999999877


Q ss_pred             EEEeC
Q 040274          209 GIGHS  213 (359)
Q Consensus       209 ~~g~~  213 (359)
                      +.+..
T Consensus       501 V~~~~  505 (573)
T PRK13614        501 VTKAS  505 (573)
T ss_pred             EEecc
Confidence            76543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.63  E-value=11  Score=34.93  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecC--CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCCc----ee
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYH--QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA----KT  153 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~v----~~  153 (359)
                      ..++++..+|.|.-.|+.++..+.....-  ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+..+....    ..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            35666678888888898888766543322  12333333333665 7777888899999998898877773222    22


Q ss_pred             EEEcCCC-cEEEEcCCcEEEEcCCCC
Q 040274          154 LDFSQKG-LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       154 ~~~s~~g-l~~~~~d~~i~v~d~~~~  178 (359)
                      .....++ ++.++.++.+...|..++
T Consensus       148 ~~v~~~~~v~~~s~~g~~~al~~~tG  173 (370)
T COG1520         148 PPVVGDGTVYVGTDDGHLYALNADTG  173 (370)
T ss_pred             CcEEcCcEEEEecCCCeEEEEEccCC
Confidence            2223344 333335676666664333

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.38  E-value=0.15  Score=47.77  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=74.3

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccc
Q 040274          112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYM  186 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~  186 (359)
                      -....|-|.+..++.++.+..+..||-. ++.+...  ++...+++|.-+|   ++.+-..+.+.+||+.......-...
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            3445678888789999999999999854 5554444  5667888998888   55666789999999755422221111


Q ss_pred             cccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       187 ~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +.   +  .-.=+.|++.+..++.|...|.+.|+..|..
T Consensus       116 g~---~--s~sll~wsKg~~el~ig~~~gn~viynhgts  149 (615)
T KOG2247|consen  116 GT---S--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTS  149 (615)
T ss_pred             Cc---c--hHHHHhhccCCccccccccccceEEEeccch
Confidence            11   1  1222789999999999988888888765544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.04  E-value=16  Score=32.57  Aligned_cols=87  Identities=16%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec------CCCeEEEEEcCCCee--e-----EeecCCceeE
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG------KECKIKIWDLRKYEV--L-----QTLTGHAKTL  154 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~------~d~~i~vwd~~~~~~--~-----~~~~~~v~~~  154 (359)
                      -..|++||+.+.+...--.+-.+.|+++.|..+..+++.|.      ....+-.||..+...  +     ..++++++.+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            35699999887665444444568899999986666666664      345688899876532  1     1235677777


Q ss_pred             EEcCC-C--cE-EEE-c--CCcEEEEc
Q 040274          155 DFSQK-G--LL-AVG-T--GSFAQILG  174 (359)
Q Consensus       155 ~~s~~-g--l~-~~~-~--d~~i~v~d  174 (359)
                      .+..+ +  ++ ++. .  +..|..||
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEc
Confidence            77433 2  43 333 2  24567776

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=83.65  E-value=3.4  Score=41.60  Aligned_cols=132  Identities=8%  Similarity=0.097  Sum_probs=77.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCc-ceEE--e-ecCCCCeEEEEEecCCCEEEEecCCCeEEE--------EEcCCCeeeEee
Q 040274           80 GVVSLGHSGGTVTMWKPTTSA-LLIK--M-LYHQGPVSALAFHPNGHLMATTGKECKIKI--------WDLRKYEVLQTL  147 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~-~~~~--~-~~h~~~v~~l~~~p~g~~l~s~~~d~~i~v--------wd~~~~~~~~~~  147 (359)
                      ..+..|+.+|.+.++.-..+. ....  + ......+.++.+++.  .+..|..||++-.        ||......+..-
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g  625 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTG  625 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccccccC
Confidence            357788889999999765221 1111  1 122345566665543  2333444444433        555422333333


Q ss_pred             cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          148 TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       148 ~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      ..++.+..+..| ++.++.+|.|.|+...+.. .......|.. +...|+++.+...|-+++.++.+-.
T Consensus       626 ~lPvrsla~~ed-~~was~gG~V~vi~~tt~~-~~~~leahqe-e~~~Vthm~~~~~gVwvafasG~~~  691 (925)
T KOG3522|consen  626 SLPVRSLAFQED-FVWASEGGCVHVIPSTTFI-RSWDLEAHQE-EAHSVTHMLYLDNGVWVAFASGDEE  691 (925)
T ss_pred             Cccccchhhhhc-eeeeecCCceEEEechhcc-ccchhHHHHh-hcceEEEEEeeCCceEEEEcCCCEE
Confidence            556777777655 6778889999999865432 2222233322 3447999999888888777766643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.29  E-value=42  Score=31.85  Aligned_cols=95  Identities=7%  Similarity=0.108  Sum_probs=63.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce----EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC----
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL----IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK----  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~----~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~----  140 (359)
                      +|.++.||+|++.|++--.+.+|.+++....++.    .+.+..+..|.+..|+.+ .-+|..+..| +-+|....    
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs  145 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS  145 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh
Confidence            8999999999999999999999999987433322    222233456888899766 4455555444 55554432    


Q ss_pred             CeeeEeecCCceeEEEcCCC---cEEEE
Q 040274          141 YEVLQTLTGHAKTLDFSQKG---LLAVG  165 (359)
Q Consensus       141 ~~~~~~~~~~v~~~~~s~~g---l~~~~  165 (359)
                      ...+.+....|+-..|+++.   +++.+
T Consensus       146 lRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  146 LRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhcccCccEEEEccccceEeeecc
Confidence            23344445567788888887   44444

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.09  E-value=32  Score=30.98  Aligned_cols=64  Identities=9%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC-cee-------EEEcCCC-cE-EEEcCCcEEEEcC
Q 040274          112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH-AKT-------LDFSQKG-LL-AVGTGSFAQILGD  175 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-v~~-------~~~s~~g-l~-~~~~d~~i~v~d~  175 (359)
                      ++++...++|.+|+|+-.-..|.+.|..+|+.+..+.++ -.+       ++|-.+- ++ ....++.|.|||-
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            678888889999999988899999999999999988554 222       3332222 33 2235678999983

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.96  E-value=11  Score=27.12  Aligned_cols=42  Identities=14%  Similarity=0.233  Sum_probs=28.0

Q ss_pred             EeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe
Q 040274           85 GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT  127 (359)
Q Consensus        85 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~  127 (359)
                      +..+|.+..||+.+++....+.+ -..-+.+++++|+.+++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            44578899999999875444433 3456899999999976665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.96  E-value=35  Score=30.65  Aligned_cols=107  Identities=12%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcc-eEEeec-----CCCCeEEEEEecCCC------------EE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT------TSAL-LIKMLY-----HQGPVSALAFHPNGH------------LM  124 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~------~~~~-~~~~~~-----h~~~v~~l~~~p~g~------------~l  124 (359)
                      .-+.|+++|.+.+-++....+...+||..      ...+ +.++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45678888877777777777888999876      2222 233331     124567788875332            36


Q ss_pred             EEecCCCeEEEEEcCCCee-----eEee----cCCc-eeEEEcCC--C--cEEEEc-CCcEEEEcC
Q 040274          125 ATTGKECKIKIWDLRKYEV-----LQTL----TGHA-KTLDFSQK--G--LLAVGT-GSFAQILGD  175 (359)
Q Consensus       125 ~s~~~d~~i~vwd~~~~~~-----~~~~----~~~v-~~~~~s~~--g--l~~~~~-d~~i~v~d~  175 (359)
                      +.++.||+|.-|...-+..     ...+    .+.| ..+++...  +  |+++.. .++|.|||-
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            7788999999998532211     1222    1233 34555433  3  444443 589999984

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=82.29  E-value=36  Score=32.91  Aligned_cols=53  Identities=11%  Similarity=0.092  Sum_probs=28.0

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC---CeEEEEEecCCCEEEEec
Q 040274           73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG---PVSALAFHPNGHLMATTG  128 (359)
Q Consensus        73 l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~p~g~~l~s~~  128 (359)
                      +.+.++|.+++...  ..+..+|+. |+.+..+....+   .-+.+.+.|+|++|+.+.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~  208 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS  208 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence            56677887776554  778888875 555554442221   135677889999988777

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.06  E-value=5.8  Score=23.08  Aligned_cols=29  Identities=21%  Similarity=0.404  Sum_probs=17.9

Q ss_pred             CCCCeEEEEEecCCCEEEEecC-C--CeEEEE
Q 040274          108 HQGPVSALAFHPNGHLMATTGK-E--CKIKIW  136 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~-d--~~i~vw  136 (359)
                      ..+.-.+..|+|||+.|+.++. +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456677889999988766553 3  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=81.57  E-value=39  Score=30.20  Aligned_cols=137  Identities=13%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe--ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe---e
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM--LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE---V  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~--~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~---~  143 (359)
                      -+..+.++  +.+.+.+..+.-++|.|+.+......+  ..-.+.  +-.|.-.|++...+..|.-+-+.|+.+.+   .
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy--aygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY--AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCce--EEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            34455554  446667777778999998876432221  111233  33344568899988877778888987643   2


Q ss_pred             eEee--c-CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          144 LQTL--T-GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       144 ~~~~--~-~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      .-.+  . +....++.|.+--+.+..|+.+.|.|+.+...+  .+.++.. .+..+.++..+++-.+++...
T Consensus       164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sP--vli~~~n-~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSP--VLIGSYN-TGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCC--eEEEEEe-cCCceEEEEecCCeeEEEEcc
Confidence            2222  2 223566776554445557888999997654322  2333322 333578888887766655443

>PRK13613 lipoprotein LpqB; Provisional

Probab=81.55  E-value=42  Score=33.51  Aligned_cols=141  Identities=12%  Similarity=0.042  Sum_probs=75.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcc----e-EEeecCCCCeEEEEEecCCCEEEEecC--CC--eEEEEEc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGG-TVTMWKPTTSAL----L-IKMLYHQGPVSALAFHPNGHLMATTGK--EC--KIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg-~v~lwd~~~~~~----~-~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~--~i~vwd~  138 (359)
                      .+.+++.++++..++..+.++ .+++..+..+..    . ..+.  ...++..+|.++| .+-+...  ++  .+.+..-
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence            567888999988888777665 455554433322    1 1122  3346778888887 4445422  22  2555543


Q ss_pred             CCCeeeE----eecC-CceeEEEcCCC--cEE-EEc--CCcEEEEcCCCCCccccccccc-c-CCCCcceeEEEEccCCC
Q 040274          139 RKYEVLQ----TLTG-HAKTLDFSQKG--LLA-VGT--GSFAQILGDFSGSHNYSRYMGN-S-MVKGYQIGKVSFRPYED  206 (359)
Q Consensus       139 ~~~~~~~----~~~~-~v~~~~~s~~g--l~~-~~~--d~~i~v~d~~~~~~~~~~~~~~-~-~~~~~~v~~~~~sp~~~  206 (359)
                       +++...    .+.+ .|+.+..|+||  ++. ...  .+.|+|--+.....-...+... . ......+.+++|..++.
T Consensus       441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~s  519 (599)
T PRK13613        441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQ  519 (599)
T ss_pred             -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCE
Confidence             444321    1134 79999999999  222 222  2455543322211110111110 0 00112489999999998


Q ss_pred             EEEEEeC
Q 040274          207 VLGIGHS  213 (359)
Q Consensus       207 ~l~~g~~  213 (359)
                      +++.|..
T Consensus       520 L~Vlg~~  526 (599)
T PRK13613        520 LVVLGRE  526 (599)
T ss_pred             EEEEecc
Confidence            8776643

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.34  E-value=14  Score=34.84  Aligned_cols=100  Identities=10%  Similarity=0.028  Sum_probs=58.3

Q ss_pred             CCEEEEEeCCCeEEEE-eCC-CCcc----eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe--ecCC
Q 040274           79 NGVVSLGHSGGTVTMW-KPT-TSAL----LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT--LTGH  150 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lw-d~~-~~~~----~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~  150 (359)
                      |..+.+++.||.|.-| |.+ ++.+    +..+.-...++..+.-..+-+-+++-+..|++.++.......+..  .-..
T Consensus       280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~  359 (733)
T COG4590         280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA  359 (733)
T ss_pred             ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC
Confidence            4457788899999888 333 2222    122222223333333222344577777778777775443332211  1234


Q ss_pred             ceeEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 040274          151 AKTLDFSQKG-LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       151 v~~~~~s~~g-l~~~~~d~~i~v~d~~~~  178 (359)
                      +.-+++||++ .+..-..|.++++.+.+.
T Consensus       360 ~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr  388 (733)
T COG4590         360 PQLVAMSPNQAYLLSEDQGKIRLAQLENR  388 (733)
T ss_pred             cceeeeCcccchheeecCCceEEEEecCC
Confidence            5678999999 776777789999986554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-04
2h9l_A	329	Wdr5delta23 Length = 329		6e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 54  WILPSSGRYMAVAGRRTDLMRV--NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP 111
           WI P      A++G R+ + RV  +P   V+       T+ +W   T      +  H   
Sbjct: 94  WI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
           V  ++F  +G L+A+   +  IK+WD + +E ++T+ GH
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQKG-LLA 163
           H+ PV+ + FHP   +M +  ++  IK+WD    +  +TL GH  +   + F   G LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED 206
             +      L DF G        G+     + +  VS  P  D
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNGD 205

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           TV +W      LL  +  H   V+ +AF P+G  +A+   +  +K+W+ R  ++LQTLTG
Sbjct: 244 TVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 301
Query: 150 HAKTL 154
           H+ ++
Sbjct: 302 HSSSV 306

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
           H   ++    F      A G+      L D         Y  ++++ G  I  VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
           H   ++    F      A G+      L D         Y  ++++ G  I  VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
           H   ++    F      A G+      L D         Y  ++++ G  I  VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
           H   ++    F      A G+      L D         Y  ++++ G  I  VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
           H   ++    F      A G+      L D         Y  ++++ G  I  VSF
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 289

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 89  GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
           G + ++   T  LL  +  H  P+ +L F P+  L+ T   +  IKI+D++   +  TL+
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
Query: 149 GHA 151
           GHA
Sbjct: 246 GHA 248

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 194 LCRIWDTASGQCLKTL 209

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 196 LCRIWDTASGQCLKTL 211

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 173 LCRIWDTASGQCLKTL 188

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 189 LCRIWDTASGQCLKTL 204

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 172 LCRIWDTASGQCLKTL 187

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 172 LCRIWDTASGQCLKTL 187

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 177 LCRIWDTASGQCLKTL 192

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 168 LCRIWDTASGQCLKTL 183

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72  LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
               NP + ++  G    +V +W   T   L  +  H  PVSA+ F+ +G L+ ++  + 
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 132 KIKIWDLRKYEVLQTL 147
             +IWD    + L+TL
Sbjct: 171 LCRIWDTASGQCLKTL 186

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 29  PLREELYGKSAKAAAKVEKNL--VHILWILPSSGRYMA--VAGRRTDLMRVNPFNG---- 80
           P   E+Y + AK  AK E +   +++ WI   + + ++  V    TD +    F+     
Sbjct: 571 PETSEVY-RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 629
Query: 81  VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
           + S G +  T+ ++K  T   L+ +  H+  V   AF  +   +AT   + K+KIWD   
Sbjct: 630 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 141 YEVLQTLTGHAKTLD---FSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
            +++ T   H++ ++   F+ K    LLA G+  F   L D +     +   G++     
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 744
Query: 195 QIGKVSFRPYEDVLG 209
            +    F P +++L 
Sbjct: 745 SVNHCRFSPDDELLA 759

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 29  PLREELYGKSAKAAAKVEKNL--VHILWILPSSGRYMA--VAGRRTDLMRVNPFNG---- 80
           P   E+Y + AK  AK E +   +++ WI   + + ++  V    TD +    F+     
Sbjct: 578 PETSEVY-RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 636
Query: 81  VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
           + S G +  T+ ++K  T   L+ +  H+  V   AF  +   +AT   + K+KIWD   
Sbjct: 637 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 141 YEVLQTLTGHAKTLD---FSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
            +++ T   H++ ++   F+ K    LLA G+  F   L D +     +   G++     
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 751
Query: 195 QIGKVSFRPYEDVLG 209
            +    F P +++L 
Sbjct: 752 SVNHCRFSPDDELLA 766

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
2pm7_B	297	Protein transport protein SEC13, protein transport	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.84
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.84
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.84
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.82
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.62
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.62
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.61
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.6
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.59
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.56
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.52
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.51
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.46
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.45
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.34
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.33
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.29
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.26
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.26
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.25
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.25
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.24
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.23
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.23
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.14
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.1
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.09
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.07
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.03
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.99
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.97
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.96
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.96
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.94
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.89
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.89
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.87
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.86
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.83
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.81
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.8
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.72
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.56
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.55
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.4
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.39
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.05
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.02
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.0
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.95
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.58
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.49
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.44
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.41
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.36
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.34
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.28
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.23
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.18
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.1
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.06
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.82
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.63
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.61
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.13
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.87
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.58
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.23
3ott_A	758	Two-component system sensor histidine kinase; beta	94.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.66
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.14
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.25
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.21
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.99
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.72
3ott_A	758	Two-component system sensor histidine kinase; beta	91.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.68
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.83
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.41
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.4
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	86.99
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	86.92
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	86.82
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	85.42
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	85.33
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	84.84
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.52
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.7
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	80.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.48

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=8e-28  Score=218.24  Aligned_cols=165  Identities=15%  Similarity=0.209  Sum_probs=149.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ++++|+|+|++|++|+.                       .|.+++|+|++.+|++|+.||.|++||+.+++.+..+.+|
T Consensus       126 ~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h  205 (321)
T 3ow8_A          126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH  205 (321)
T ss_dssp             CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc
Confidence            78999999999999875                       5889999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ..+|++++|+|++.+|++++.|+.|++||++++..+..+.   +.|.+++|+|+|  +++++.|++|+|||+.+. ....
T Consensus       206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~  284 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVH  284 (321)
T ss_dssp             SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEE
Confidence            9999999999999999999999999999999998888874   458999999999  888999999999997554 5556


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+..|..    .|.+++|+|++.+|++++.||.+.+|.
T Consensus       285 ~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          285 TFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            6666644    899999999999999999999888876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=1.9e-27  Score=213.87  Aligned_cols=181  Identities=10%  Similarity=0.151  Sum_probs=151.4

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ++++|+|||.+|++++.                       .|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|
T Consensus        17 ~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h   96 (304)
T 2ynn_A           17 KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH   96 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence            89999999999999886                       7899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeEee---cCCceeEEEcCC-C--cEEEEcCCcEEEEcCCCCCcc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQTL---TGHAKTLDFSQK-G--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~~~---~~~v~~~~~s~~-g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      .+.|++++|+|++.+|++|+.|++|++||++++ .....+   ...|.+++|+|+ +  +++++.|++|++||+......
T Consensus        97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            999999999999999999999999999999987 444555   345899999994 4  788899999999997554332


Q ss_pred             ccccccccCCCCcceeEEEEcc--CCCEEEEEeCCCeEEE------------------------------EEcCCCCCce
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSGI------------------------------LVPRSSEPNF  229 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~g~~dg~~~i------------------------------~~~gs~~~~~  229 (359)
                      ......+    ...+..+.|+|  ++.+|++|+.||.+++                              +++++.|+.+
T Consensus       177 ~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          177 FTLTTGQ----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             EEEECCC----TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             ceeccCC----cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence            2222222    23688888886  6789999999998877                              3556667778


Q ss_pred             eeeccCC
Q 040274          230 DSWVANP  236 (359)
Q Consensus       230 ~~~~~~~  236 (359)
                      ++|+...
T Consensus       253 ~iWd~~~  259 (304)
T 2ynn_A          253 KIWNSST  259 (304)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            8887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=218.60  Aligned_cols=166  Identities=15%  Similarity=0.265  Sum_probs=142.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cceE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS--ALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~--~~~~  103 (359)
                      ++++|+|||++|++|+.                          .|.+++|+|++.+|++|+.|++|++||+.++  .++.
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT   99 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence            78999999999999886                          6899999999999999999999999998876  4567


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe---eeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE---VLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~---~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      .+.+|...|++++|+|++++|++++.|++|++||+..+.   ++..+   ...|.+++|+|++  +++++.|+.|++||+
T Consensus       100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~  179 (345)
T 3fm0_A          100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE  179 (345)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred             EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence            888999999999999999999999999999999998753   34444   3458999999999  788889999999996


Q ss_pred             CCCCc-cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          176 FSGSH-NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       176 ~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..... ....+.+|.    ..|++++|+|+|.+|++|+.||.++||.
T Consensus       180 ~~~~~~~~~~~~~h~----~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          180 EEDDWVCCATLEGHE----STVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             ETTEEEEEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEEecCCC----CceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            54321 223445554    3899999999999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=3.5e-27  Score=216.08  Aligned_cols=164  Identities=18%  Similarity=0.228  Sum_probs=137.3

Q ss_pred             eEEEECCCCCEEEEecc---------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~   98 (359)
                      .+++|+|||++|++++.                                 .|.+++|+|++ .|++|+.||+|+|||+.+
T Consensus        34 ~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~  112 (344)
T 4gqb_B           34 EAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE  112 (344)
T ss_dssp             EEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC
Confidence            89999999999998864                                 58999999985 788999999999999999


Q ss_pred             CcceEE----eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC---cEEEEcCC
Q 040274           99 SALLIK----MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG---LLAVGTGS  168 (359)
Q Consensus        99 ~~~~~~----~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g---l~~~~~d~  168 (359)
                      ++.+..    +.+|.+.|++++|+|+|++|++|+.|++|++||+.+++++.++.   +.|++++|+|++   +++++.|+
T Consensus       113 ~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~  192 (344)
T 4gqb_B          113 NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN  192 (344)
T ss_dssp             TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccc
Confidence            876544    34899999999999999999999999999999999999999885   458999999988   67888999


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCEEEEEeCCCeEEE
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSGI  219 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~~dg~~~i  219 (359)
                      +|++||+... .....+..+.  ++..+.+++|+|+ +.+|++|+.||.+++
T Consensus       193 ~v~iwd~~~~-~~~~~~~~~~--~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          193 RILLWDTRCP-KPASQIGCSA--PGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             CEEEEETTSS-SCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             cccccccccc-ceeeeeecce--eeccceeeeecCCCCcceEEeccCCcEEE
Confidence            9999997655 3333332221  3346899999995 568899999998877

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=2.7e-27  Score=216.83  Aligned_cols=167  Identities=13%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      .+++|+||+. |++|+.                           .|++++|+|++.+|++|+.||+|++||+.+++++..
T Consensus        86 ~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~  164 (344)
T 4gqb_B           86 ADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS  164 (344)
T ss_dssp             EEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            8899999975 555554                           689999999999999999999999999999999999


Q ss_pred             eecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC---cEEEEcCCcEEEEcC
Q 040274          105 MLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG---LLAVGTGSFAQILGD  175 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g---l~~~~~d~~i~v~d~  175 (359)
                      +.+|.+.|++++|+|++ .+|++++.|++|++||+++++++..+.     ..+.+++|+|++   +++++.|+.|+|||+
T Consensus       165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            99999999999999987 478999999999999999998877762     247899999976   566788999999997


Q ss_pred             CCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEEEcCC
Q 040274          176 FSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~~~gs  224 (359)
                      ... ..+..+..|..    .|++++|+|++ .+|++|+.||.++||....
T Consensus       245 ~~~-~~~~~~~~h~~----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          245 KST-SCVLSSAVHSQ----CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             CC---CCEEEECCSS----CEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             CCC-cEEEEEcCCCC----CEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            654 56666666654    89999999998 6899999999999975543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.4e-26  Score=208.54  Aligned_cols=165  Identities=15%  Similarity=0.268  Sum_probs=146.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|+|++|++|+.                       .|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|
T Consensus        27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  106 (312)
T 4ery_A           27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH  106 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence            89999999999999876                       7899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ...|.+++|+|++.+|++++.|+.|++||+++++++..+.   ..+.+++|+|+|  +++++.|+.|++||+... ....
T Consensus       107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~  185 (312)
T 4ery_A          107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLK  185 (312)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceee
Confidence            9999999999999999999999999999999998888873   468999999999  788889999999997655 3333


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .+..+   +...+.+++|+|++.+|++++.||.+.+|
T Consensus       186 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          186 TLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLW  219 (312)
T ss_dssp             EECCS---SCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             EEecc---CCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            33222   33479999999999999999999988774

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=6.7e-27  Score=219.29  Aligned_cols=169  Identities=14%  Similarity=0.177  Sum_probs=151.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|+|++|++|+.                       .|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|
T Consensus       154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h  233 (410)
T 1vyh_C          154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  233 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence            88999999999999986                       7999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCC--------------------C--cEE
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQK--------------------G--LLA  163 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~--------------------g--l~~  163 (359)
                      ...|.++.|+|+|.+|++|+.|++|++||+.++.+...+.   ..|.+++|+|+                    |  +++
T Consensus       234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            9999999999999999999999999999999998888773   45899999995                    5  788


Q ss_pred             EEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ++.|+.|++||+..+ .....+.+|..    .|.+++|+|+|.+|++|+.||.+++|....+
T Consensus       314 gs~D~~i~iwd~~~~-~~~~~~~~h~~----~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTG-MCLMTLVGHDN----WVRGVLFHSGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             EeCCCeEEEEECCCC-ceEEEEECCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            889999999997654 55566666644    8999999999999999999999999876544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=8.3e-27  Score=211.53  Aligned_cols=170  Identities=15%  Similarity=0.170  Sum_probs=152.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|++.++++++.                       .+.+++|+|++.+|++|+.||.|++|++.++.....+..|
T Consensus        84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~  163 (321)
T 3ow8_A           84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR  163 (321)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC
Confidence            88999999999999876                       5778999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ...|.+++|+|+|.+|++++.|+.|++||+.+++++..+.   ..|++++|+|++  +++++.|+.|++||+... ....
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~  242 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAG  242 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEE
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeE
Confidence            9999999999999999999999999999999999988884   458999999999  778888999999997554 4455


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .+..|..    .|.+++|+|++.+|++|+.||.+.+|....+.
T Consensus       243 ~~~~h~~----~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          243 TLSGHAS----WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             EECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEcCCCC----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence            5566644    79999999999999999999999998766543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=8.3e-27  Score=218.66  Aligned_cols=164  Identities=15%  Similarity=0.191  Sum_probs=147.7

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ++++|+|++.+|++|+.                       .|++++|+|++.+|++|+.||+|++||+.++.++..+.+|
T Consensus       112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  191 (410)
T 1vyh_C          112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH  191 (410)
T ss_dssp             EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Confidence            89999999999999976                       7999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ...|++++|+|++.+|++|+.|++|++||++++.++.++.+   .+.++.|+|+|  +++++.|+.|++||+... ....
T Consensus       192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~  270 (410)
T 1vyh_C          192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKA  270 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceee
Confidence            99999999999999999999999999999999999888844   48999999999  788889999999997554 4445


Q ss_pred             ccccccCCCCcceeEEEEccC--------------------CCEEEEEeCCCeEEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPY--------------------EDVLGIGHSMGWSGIL  220 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~g~~dg~~~i~  220 (359)
                      .+..|..    .|.+++|+|+                    |.+|++|+.||.+.+|
T Consensus       271 ~~~~h~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw  323 (410)
T 1vyh_C          271 ELREHRH----VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  323 (410)
T ss_dssp             EECCCSS----CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             EecCCCc----eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence            5555544    8999999996                    6789999999998874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.2e-26  Score=212.05  Aligned_cols=147  Identities=17%  Similarity=0.266  Sum_probs=132.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|.+++|+|++.+|++|+.||+|++||+.++.++..+.+|...|++++|+|++.+|++++.|++|++||+++++.+..+.
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999988877762


Q ss_pred             -----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          149 -----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       149 -----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                           ..+++++|+|+|  +++++.|+.|++||+... .....+.+|..    .|.+++|+|+|.+|++|+.||.+.||
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCccEEec
Confidence                 258999999999  778888999999996554 45556666654    89999999999999999999988887

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=2.2e-26  Score=214.49  Aligned_cols=168  Identities=15%  Similarity=0.234  Sum_probs=145.2

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------------ceeEEEEcCCCCEEEEEeCCCeE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------------RTDLMRVNPFNGVVSLGHSGGTV   91 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------------~v~~l~~sp~~~~l~tg~~dg~v   91 (359)
                      ++++|+|||++|++|+.                                        .|.+++|+|++.+|++|+.||.|
T Consensus        68 ~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i  147 (393)
T 1erj_A           68 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI  147 (393)
T ss_dssp             CEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeE
Confidence            89999999999999864                                        17899999999999999999999


Q ss_pred             EEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcC-CC--cEEEEc
Q 040274           92 TMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ-KG--LLAVGT  166 (359)
Q Consensus        92 ~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~-~g--l~~~~~  166 (359)
                      ++||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++++...+  ...+.+++|+| +|  +++++.
T Consensus       148 ~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          148 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999887766  56689999999 77  778889


Q ss_pred             CCcEEEEcCCCCCcccccccc----ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          167 GSFAQILGDFSGSHNYSRYMG----NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      |+.|++||+..+ .....+..    ..+ |...|++++|+|+|.+|++|+.||.+.+|.
T Consensus       228 d~~v~iwd~~~~-~~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          228 DRAVRVWDSETG-FLVERLDSENESGTG-HKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             TSCEEEEETTTC-CEEEEEC------CC-CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCcEEEEECCCC-cEEEeecccccCCCC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            999999997654 33322210    011 344899999999999999999999988874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=4.6e-26  Score=209.41  Aligned_cols=172  Identities=16%  Similarity=0.217  Sum_probs=148.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      .+++|+|+|.+|++|+.                             .|.+++|+|++..|++|+.||+|++||+.+++++
T Consensus       110 ~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~  189 (354)
T 2pbi_B          110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL  189 (354)
T ss_dssp             CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence            67899999999999875                             4789999999999999999999999999999999


Q ss_pred             EEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          103 IKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      ..+.+|...|.+++|+|  +|.+|++|+.|+.|++||+++++++..+.   ..|++++|+|+|  +++++.|++|++||+
T Consensus       190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999999988  57899999999999999999999988884   458999999999  888899999999997


Q ss_pred             CCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          176 FSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ... .....+..+.  +...+.+++|+|+|.+|++|+.|+.+.+|....+.
T Consensus       270 ~~~-~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          270 RAD-REVAIYSKES--IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             TTT-EEEEEECCTT--CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCC-cEEEEEcCCC--cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            654 3333333221  23368999999999999999999999999865543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=3.8e-26  Score=210.26  Aligned_cols=180  Identities=17%  Similarity=0.236  Sum_probs=141.4

Q ss_pred             eEEEECCCCCEEEEecc---------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~   98 (359)
                      .+++|||||++|++|+.                                 .|++++|+|++. +++++.||+|+|||+.+
T Consensus        46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILE  124 (357)
T ss_dssp             EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC----
T ss_pred             EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccc
Confidence            89999999999999863                                 589999999875 55678899999999988


Q ss_pred             CcceE----EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC---cEEEEcCC
Q 040274           99 SALLI----KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG---LLAVGTGS  168 (359)
Q Consensus        99 ~~~~~----~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g---l~~~~~d~  168 (359)
                      ++.+.    ...+|.+.|++++|+|++.+|++++.|+.|++||+.+++++..+.   +.|++++|+|++   +++++.|+
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg  204 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG  204 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC
Confidence            76543    344899999999999999999999999999999999999988884   458999999987   67888999


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEE----------------------------
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGI----------------------------  219 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i----------------------------  219 (359)
                      .|++||+... .....+..+.  +...+++++|+|++ .+|++|+.|+.+.+                            
T Consensus       205 ~v~~wd~~~~-~~~~~~~~~~--~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          205 RILLWDTRKP-KPATRIDFCA--SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             CEEECCTTSS-SCBCBCCCTT--CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred             ceEEEECCCC-ceeeeeeecc--ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence            9999997665 3333222221  33479999999975 68899999998877                            


Q ss_pred             ---EEcCCCCCceeeeccC
Q 040274          220 ---LVPRSSEPNFDSWVAN  235 (359)
Q Consensus       220 ---~~~gs~~~~~~~~~~~  235 (359)
                         +++++.|+.+++|+++
T Consensus       282 ~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             SCCEEEEETTSCEEEECTT
T ss_pred             CCEEEEEeCCCEEEEEECC
Confidence               3556667888888764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=7.6e-26  Score=207.94  Aligned_cols=164  Identities=15%  Similarity=0.221  Sum_probs=145.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.|+|++.+|++++.                       .|.+++|+|  ++.+|++|+.||.|++||+.+++++..+.
T Consensus       158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~  237 (354)
T 2pbi_B          158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE  237 (354)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            78999999999999876                       688999988  46899999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~  179 (359)
                      +|...|++++|+|++.+|++++.|++|++||++++..+..+.     ..+++++|+|+|  +++++.|+.|++||+..+ 
T Consensus       238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-  316 (354)
T 2pbi_B          238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-  316 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-
T ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-
Confidence            999999999999999999999999999999999988776662     246899999999  777888999999997554 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .....+.+|..    .|++++|+|+|.+|++|+.||.+++|
T Consensus       317 ~~~~~l~~h~~----~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          317 SRVSILFGHEN----RVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             SEEEEECCCSS----CEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ceEEEEECCCC----cEEEEEECCCCCEEEEEcCCCCEEec
Confidence            44555666644    89999999999999999999988887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=3.7e-26  Score=210.30  Aligned_cols=169  Identities=13%  Similarity=0.112  Sum_probs=145.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      ++++|+|++.+|+.+..                          .|++++|+|++.+|++|+.||.|++||+.+++++..+
T Consensus        98 ~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B           98 TDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            89999999988876654                          6899999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCeeeEee-----cCCceeEEEcCCC---cEEEEcCCcEEEEcCC
Q 040274          106 LYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYEVLQTL-----TGHAKTLDFSQKG---LLAVGTGSFAQILGDF  176 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~  176 (359)
                      .+|...|++++|+|++. ++++++.|+.|++||+++++++..+     ...+++++|+|++   +++++.|+.|++||+.
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            99999999999999874 7899999999999999998876655     3457999999986   5567789999999975


Q ss_pred             CCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 040274          177 SGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .. .....+..|..    .|++++|+|++ .+|++|+.||.++||...++
T Consensus       258 ~~-~~~~~~~~~~~----~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          258 NP-DSAQTSAVHSQ----NITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             CG-GGCEEECCCSS----CEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             CC-cEeEEEeccce----eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            54 55555655544    89999999987 68999999999999865433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.3e-25  Score=205.12  Aligned_cols=165  Identities=15%  Similarity=0.230  Sum_probs=144.7

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA----LLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~----~~~~  104 (359)
                      ++++|+|||++|++|+.                       .|.+++|+|++.+|++|+.|+.|++|++.++.    ....
T Consensus        59 ~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           59 YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            89999999999999986                       58899999999999999999999999998753    4556


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~  179 (359)
                      +.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.   +.|.+++|+|++  +++++.|+.|++||+... 
T Consensus       139 ~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-  216 (340)
T 1got_B          139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-  216 (340)
T ss_dssp             EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-
T ss_pred             ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-
Confidence            779999999999998874 8899999999999999999988884   458999999999  778889999999997654 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .....+..|..    .|++++|+|++.+|++|+.||.+++|..
T Consensus       217 ~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~d~~v~iwd~  255 (340)
T 1got_B          217 MCRQTFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             SEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeEEEEcCCcC----CEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            45555666644    7999999999999999999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=1.2e-25  Score=208.51  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=128.2

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPT-TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~-~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .|.+++|+| ++.+|++|+.||+|++||++ ++.++..+.+|.+.|++++|+|++.+|++|+.|++|++||++++..+..
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            467788877 78899999999999999997 4577888999999999999999999999999999999999999998877


Q ss_pred             ecC----------CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          147 LTG----------HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       147 ~~~----------~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      +..          .+++++|+|+|  +++++.|+.|++||+... .....+......|...|++++|+|+|.+|++|+.|
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence            722          27899999999  777778999999997554 33322211101144589999999999999999999


Q ss_pred             CeEEEEEcCCC
Q 040274          215 GWSGILVPRSS  225 (359)
Q Consensus       215 g~~~i~~~gs~  225 (359)
                      |.+.||.....
T Consensus       366 ~~i~iW~~~~~  376 (380)
T 3iz6_a          366 KNLKIWAFSGH  376 (380)
T ss_dssp             SCEEEEECCSS
T ss_pred             CCEEEEecCCC
Confidence            98888876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=2.8e-25  Score=203.36  Aligned_cols=172  Identities=14%  Similarity=0.185  Sum_probs=140.8

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---ceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---LLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---~~~  103 (359)
                      .+++|+|+|++|++|+.                         .|.+++|+|++.+|++|+.|++|++||+.++.   ++.
T Consensus        65 ~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  144 (345)
T 3fm0_A           65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS  144 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE
Confidence            89999999999999885                         68999999999999999999999999998763   456


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe--eeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCC
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE--VLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDF  176 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~--~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~  176 (359)
                      .+.+|...|.+++|+|++.+|++++.|+.|++||+..+.  ++.++   .+.|++++|+|+|  +++++.|++|+|||..
T Consensus       145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            677999999999999999999999999999999998875  34455   3468999999999  8888999999999953


Q ss_pred             CCCcccc-----------ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          177 SGSHNYS-----------RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       177 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      .......           .+......+...|.+++|+|++..|++++.|+.+++|...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence            3211110           0001111144579999999999999999999988888654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=2.8e-25  Score=199.66  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=134.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|++++|+|++.+|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~   94 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999888884


Q ss_pred             ---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 040274          149 ---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~  222 (359)
                         +.|++++|+|++  +++++.|++|++||+.........+..|..    .|.+++|+| ++.+|++|+.||.+.+|..
T Consensus        95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~~l~sgs~D~~v~iwd~  170 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS----CEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred             CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC----cEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence               458999999999  888999999999997655444455556644    899999999 6789999999999888654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=1.1e-24  Score=197.26  Aligned_cols=168  Identities=11%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             eEEEECCCC-CEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSG-RYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg-~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      ++++|+|++ ++|++|+.                            .|.+++|+|++.+|++|+.|++|++||+.+++++
T Consensus        21 ~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~  100 (319)
T 3frx_A           21 TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY  100 (319)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee
Confidence            889999965 88998876                            6889999999999999999999999999999999


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCC------C--cEEEEcCCcEE
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQK------G--LLAVGTGSFAQ  171 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~------g--l~~~~~d~~i~  171 (359)
                      ..+.+|...|.+++|+|++.+|++++.|++|++||++ +.++..+   ...+.++.|+|.      +  +++++.|+.|+
T Consensus       101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~  179 (319)
T 3frx_A          101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK  179 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred             EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence            9999999999999999999999999999999999997 4555555   345889999884      3  78889999999


Q ss_pred             EEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          172 ILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +||+... .....+.+|..    .|.+++|+|+|.+|++|+.||.+++|....+
T Consensus       180 ~wd~~~~-~~~~~~~~h~~----~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          180 AWNLNQF-QIEADFIGHNS----NINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EEETTTT-EEEEEECCCCS----CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEECCcc-hhheeecCCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            9997543 44445555644    8999999999999999999999999976554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=5.4e-25  Score=205.06  Aligned_cols=170  Identities=14%  Similarity=0.222  Sum_probs=143.4

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|||++|++|+.                       .|.+++|+|++.+|++|+.|++|++||+.++.+...+. +
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence            68999999999999886                       69999999999999999999999999999998877764 5


Q ss_pred             CCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee----------cCCceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          109 QGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL----------TGHAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       109 ~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~----------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      ...+.+++|+| ++.+|++++.|+.|++||++++..+..+          ...|++++|+|+|  +++++.|+.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            67799999999 8999999999999999999998877665          2358999999999  888889999999997


Q ss_pred             CCCCc-----------cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          176 FSGSH-----------NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       176 ~~~~~-----------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .....           ....+.+|.    ..|.+++|+|++.+|++|+.||.+.+|...++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHK----DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             ---------------CEEEEEECCS----SCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCcccccCCCCCcceEEEeccc----CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence            64321           122334443    379999999999999999999999998765544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=8.8e-25  Score=204.44  Aligned_cols=177  Identities=12%  Similarity=0.155  Sum_probs=149.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ....|+|+|++|++|+.                       .|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  180 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH  180 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence            44468999999999876                       7999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---------------------------CCceeEEEcCCC-
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---------------------------GHAKTLDFSQKG-  160 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---------------------------~~v~~~~~s~~g-  160 (359)
                      .+.|++++|+|++.+|++++.|+.|++||+++++++..+.                           ..+.+++|+|+| 
T Consensus       181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (420)
T 3vl1_A          181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK  260 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence            9999999999999999999999999999999998887773                           335567778999 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEeCCCeEEEEEcCCCCCceeee
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHSMGWSGILVPRSSEPNFDSW  232 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~~~i~~~gs~~~~~~~~  232 (359)
                       +++++.|+.|++||+............|    ...|++++|+|++. +|++|+.||.+.+|....+...+..+
T Consensus       261 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  330 (420)
T 3vl1_A          261 YVIAGHVSGVITVHNVFSKEQTIQLPSKF----TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF  330 (420)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCTT----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEccccc----CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh
Confidence             7788889999999976654333333333    34899999999999 99999999999997766554433333

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=3.7e-24  Score=195.65  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=141.6

Q ss_pred             eEEEE-----CC-CCCEEEEecc------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           52 ILWIL-----PS-SGRYMAVAGR------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        52 ~~l~~-----sp-dg~~l~~~~~------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                      ++++|     ++ ||.+|++|+.                              .|++++|+|++.+|++|+.|++|++||
T Consensus        25 ~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd  104 (343)
T 2xzm_R           25 TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD  104 (343)
T ss_dssp             EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred             hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            78888     66 9999999886                              588999999999999999999999999


Q ss_pred             CCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-----cCCceeEEEcCCC----------
Q 040274           96 PTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-----TGHAKTLDFSQKG----------  160 (359)
Q Consensus        96 ~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~v~~~~~s~~g----------  160 (359)
                      +.+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.........     ...+.+++|+|++          
T Consensus       105 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  184 (343)
T 2xzm_R          105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA  184 (343)
T ss_dssp             TTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSC
T ss_pred             CCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999843322221     3458999999974          


Q ss_pred             --cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          161 --LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       161 --l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        +++++.|+.|++||. .. .....+..|..    .|.+++|+|+|.+|++|+.||.+.+|...
T Consensus       185 ~~l~s~~~d~~i~iwd~-~~-~~~~~~~~h~~----~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          185 PYFASVGWDGRLKVWNT-NF-QIRYTFKAHES----NVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CEEEEEETTSEEEEEET-TT-EEEEEEECCSS----CEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             CEEEEEcCCCEEEEEcC-CC-ceeEEEcCccc----cceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence              788889999999993 32 34444555543    89999999999999999999999998763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=2.3e-24  Score=193.05  Aligned_cols=170  Identities=13%  Similarity=0.182  Sum_probs=140.8

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--ce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSA--LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~--~~  102 (359)
                      ++++|+|+|++|++|+.                         .|++++|+|  ++.+|++|+.||+|++||+.++.  .+
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~   92 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI   92 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence            78999999999999886                         789999986  38899999999999999998874  56


Q ss_pred             EEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCee--eEee---cCCceeEEEcCC-------------C--
Q 040274          103 IKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEV--LQTL---TGHAKTLDFSQK-------------G--  160 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~--~~~~---~~~v~~~~~s~~-------------g--  160 (359)
                      ..+.+|...|.+++|+|+  |.+|++++.|+.|++||++++..  ...+   ...|.+++|+|+             +  
T Consensus        93 ~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~  172 (297)
T 2pm7_B           93 AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred             EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence            677889999999999997  89999999999999999987632  2233   456899999996             4  


Q ss_pred             cEEEEcCCcEEEEcCCCCCc---cccccccccCCCCcceeEEEEccCC---CEEEEEeCCCeEEEEEcCCC
Q 040274          161 LLAVGTGSFAQILGDFSGSH---NYSRYMGNSMVKGYQIGKVSFRPYE---DVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +++++.|+.|++||+.....   ....+.+|.    ..|.+++|+|++   .+|++|+.|+.+.||.....
T Consensus       173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~----~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EEEEcCCCcEEEEEEcCCCceEEEEEEecCCC----CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence            78888999999999755432   223444554    389999999985   89999999999999976543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=5.6e-24  Score=192.32  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=150.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+++|+|+|++|++++.                         .|.+++|+|++.+|++++.||.|++||+.+++.+..+.
T Consensus       101 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~  180 (337)
T 1gxr_A          101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Confidence            88999999999999875                         68999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      .|...|.+++|+|++.+|++++.|+.|++||+++++.+..+  ...+.+++|+|+|  +++++.++.|++||+....  .
T Consensus       181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~  258 (337)
T 1gxr_A          181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--K  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred             cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--e
Confidence            99999999999999999999999999999999999887776  5678999999999  7777889999999976542  2


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      ..+..|.    ..|.+++|+|++.+|++++.||.+.+|....+..
T Consensus       259 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          259 YQLHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEECCCS----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEcCCc----cceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            2334443    4899999999999999999999999988765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=4.1e-24  Score=192.32  Aligned_cols=173  Identities=21%  Similarity=0.249  Sum_probs=146.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|+|++|++|+.                       .|.+++|+|++.+|++|+.||.|++||+.++.++..+..|
T Consensus        69 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            89999999999999876                       6899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      ..+|.+++|+|++.+|++++.|+.|++||+++++.+..+    ...+.+++|+|++  +++++.|+.|++||+... ...
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~  227 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL  227 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence            999999999999999999999999999999999887776    2457899999999  788888999999997554 455


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ..+..|.. ....+......+++.+|++|+.||.+.+|....+.
T Consensus       228 ~~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          228 KTYTGHKN-EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEECSSCC-SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             EEEEecCC-ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            55555543 11223333344678999999999999998765543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=6.9e-24  Score=192.27  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=130.0

Q ss_pred             ceeEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFN--GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~--~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+++|++++  .++++++.|+.|++||+.++..+..+.+|.+.|++++|+|++.+|++|+.|+.|++||+++..++..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            67888888754  5788999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             e--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccccc------ccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          147 L--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMG------NSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       147 ~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      +  ...+.+++|+|++ +++++.|+.|++||+... .....+..      ... +...|++++|+|+|++|++|+.||.+
T Consensus       253 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          253 LDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK-IIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT-EEEEEECCC-------C-CCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ecCCceEEeeecCCCCceeeccCCCEEEEEECCCC-eEEEeccccceeeeccC-CCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            8  4568999999999 889999999999996543 22221111      111 34479999999999999999999999


Q ss_pred             EEEEcCCC
Q 040274          218 GILVPRSS  225 (359)
Q Consensus       218 ~i~~~gs~  225 (359)
                      +||...+|
T Consensus       331 ~iW~~~tG  338 (340)
T 4aow_A          331 RVWQVTIG  338 (340)
T ss_dssp             EEEEEEC-
T ss_pred             EEEeCCCc
Confidence            99876554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=3.5e-24  Score=210.94  Aligned_cols=170  Identities=15%  Similarity=0.114  Sum_probs=145.0

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|+|||++|++++.                         .|++++|+|++. .|++|+.|++|++||..+++++..+
T Consensus       107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l  186 (611)
T 1nr0_A          107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  186 (611)
T ss_dssp             EEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence            89999999999998652                         689999999986 6999999999999999999889999


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----------CCceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----------GHAKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----------~~v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                      .+|...|++++|+|+|.+|++++.|++|++||+.+++++..+.          +.|.+++|+|+|  +++++.|++|++|
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999999999999999999999988877662          348999999999  8889999999999


Q ss_pred             cCCCCCcccccc----------------------------------------ccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          174 GDFSGSHNYSRY----------------------------------------MGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       174 d~~~~~~~~~~~----------------------------------------~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      |+.... ....+                                        ....+ |...|++++|+|+|.+|++|+.
T Consensus       267 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l~s~s~  344 (611)
T 1nr0_A          267 NVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTLFSADA  344 (611)
T ss_dssp             ETTTTE-EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEET
T ss_pred             eCCCCc-eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEEEEEeC
Confidence            976532 11111                                        00111 4458999999999999999999


Q ss_pred             CCeEEEEEcC
Q 040274          214 MGWSGILVPR  223 (359)
Q Consensus       214 dg~~~i~~~g  223 (359)
                      |+.+++|...
T Consensus       345 D~~v~~Wd~~  354 (611)
T 1nr0_A          345 EGHINSWDIS  354 (611)
T ss_dssp             TSCEEEEETT
T ss_pred             CCcEEEEECC
Confidence            9999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=6.5e-25  Score=203.58  Aligned_cols=168  Identities=14%  Similarity=0.210  Sum_probs=144.7

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------c
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-------L  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-------~  101 (359)
                      ++++|+|+|++|++|+.                       .|.+++|+|++.+|++|+.|+.|++||+.+..       .
T Consensus        70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~  149 (380)
T 3iz6_a           70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV  149 (380)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence            99999999999999987                       68899999999999999999999999987532       3


Q ss_pred             eEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEee-----c---CCceeEEEcC-CC--cEEEEcCCc
Q 040274          102 LIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQTL-----T---GHAKTLDFSQ-KG--LLAVGTGSF  169 (359)
Q Consensus       102 ~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~~-----~---~~v~~~~~s~-~g--l~~~~~d~~  169 (359)
                      ...+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .   ..+.+++|++ ++  +++++.|+.
T Consensus       150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence            4567799999999999996 457999999999999999999887766     2   3478999987 55  888999999


Q ss_pred             EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          170 AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       170 i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      |++||+.........+.+|..    .|++++|+|++.+|++|+.||.+++|...
T Consensus       230 v~~wd~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          230 VRLWDLRITSRAVRTYHGHEG----DINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             EEEEETTTTCCCCEEECCCSS----CCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             EEEEECCCCCcceEEECCcCC----CeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            999998755566666777754    89999999999999999999999998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.9e-24  Score=194.50  Aligned_cols=165  Identities=16%  Similarity=0.241  Sum_probs=131.7

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC------
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT------   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~------   98 (359)
                      ++++|+|+  +|++|+.                           .|.+++|+|++.+|++|+.|++|++||+..      
T Consensus        18 ~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~   95 (330)
T 2hes_X           18 WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF   95 (330)
T ss_dssp             EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred             eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence            77778776  6776654                           588999999999999999999999999853      


Q ss_pred             -CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC----CeeeEeec---CCceeEEEcCCC--cEEEEcCC
Q 040274           99 -SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK----YEVLQTLT---GHAKTLDFSQKG--LLAVGTGS  168 (359)
Q Consensus        99 -~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~----~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~  168 (359)
                       ..++..+.+|...|++++|+|+|.+|++|+.|++|++||++.    .+++..+.   ..|.+++|+|++  +++++.|+
T Consensus        96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  175 (330)
T 2hes_X           96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD  175 (330)
T ss_dssp             CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence             345677889999999999999999999999999999999953    24555553   458999999999  88888999


Q ss_pred             cEEEEcCCCCC-ccccccccccCCCCcceeEEEEccC--CCEEEEEeCCCeEEEEEc
Q 040274          169 FAQILGDFSGS-HNYSRYMGNSMVKGYQIGKVSFRPY--EDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       169 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~g~~dg~~~i~~~  222 (359)
                      +|++||+.... .....+.+|..    .|.+++|+|+  +.+|++|+.|+.+++|..
T Consensus       176 ~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          176 TVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSS----CEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCCeeEEEEccCCCC----cEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            99999965432 23445555644    8999999999  678999999999998864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=4.7e-24  Score=194.95  Aligned_cols=170  Identities=21%  Similarity=0.267  Sum_probs=139.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCC----------CEEEEEeCCCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFN----------GVVSLGHSGGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~----------~~l~tg~~dg~v~lwd~   96 (359)
                      ++++|+|+|++|++++.                         .|.+++|+|++          .+|++|+.||.|++||.
T Consensus       122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  201 (343)
T 2xzm_R          122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT  201 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence            89999999999999875                         47899999986          79999999999999994


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-CeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEE
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQI  172 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v  172 (359)
                       +......+.+|...|++++|+|+|.+|++|+.|+.|++||+.. ..+...+  ...|.+++|+|++ +++++.|+.|++
T Consensus       202 -~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~i  280 (343)
T 2xzm_R          202 -NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKI  280 (343)
T ss_dssp             -TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEE
T ss_pred             -CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEE
Confidence             4566778889999999999999999999999999999999954 3444444  4568999999999 888889999999


Q ss_pred             EcCCCCCccc-cccc--------cccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          173 LGDFSGSHNY-SRYM--------GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       173 ~d~~~~~~~~-~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ||+....... ..+.        ...+ +...|++++|+|+|.+|++|+.||.+++|...
T Consensus       281 w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          281 FNLMTQSKAPVCTIEAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EESSSCCSCSEEECCCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EEeCCCCCCceEEeecCcchhhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence            9976542211 0111        0111 34479999999999999999999998888653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-24  Score=196.04  Aligned_cols=168  Identities=15%  Similarity=0.271  Sum_probs=136.3

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cce
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS--ALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~--~~~  102 (359)
                      .+++|+|+|++|++|+.                           .|.+++|+|++.+|++|+.|++|++||+.++  .++
T Consensus       111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~  190 (330)
T 2hes_X          111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV  190 (330)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE
Confidence            89999999999999875                           5889999999999999999999999998776  677


Q ss_pred             EEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCC--------eeeEee----cCCceeEEEcCCC-cEEEEcC
Q 040274          103 IKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKY--------EVLQTL----TGHAKTLDFSQKG-LLAVGTG  167 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~--------~~~~~~----~~~v~~~~~s~~g-l~~~~~d  167 (359)
                      ..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+        .+...+    ...|.+++|++++ +++++.|
T Consensus       191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~d  270 (330)
T 2hes_X          191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD  270 (330)
T ss_dssp             EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETT
T ss_pred             EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCC
Confidence            888999999999999998  778999999999999999764        334443    3458999999888 8899999


Q ss_pred             CcEEEEcCCCCCc-ccc-ccccccCCCCcceeEEEEcc--CCCEEEEEeCCCeEEEEEc
Q 040274          168 SFAQILGDFSGSH-NYS-RYMGNSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       168 ~~i~v~d~~~~~~-~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~g~~dg~~~i~~~  222 (359)
                      +.|+|||...+.. ... ....|   ....|.+++|+|  ++.+|++|+.||.++||..
T Consensus       271 g~v~iw~~~~~~~~~~~~~~~~h---~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          271 GVLAVYEEVDGEWKVFAKRALCH---GVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             SCEEEEEEETTEEEEEEEESCTT---TTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             CEEEEEEcCCCceEEEecccccc---ccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence            9999999644311 111 11233   222699999999  7899999999998888754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=2.7e-24  Score=198.43  Aligned_cols=165  Identities=10%  Similarity=0.081  Sum_probs=132.1

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--Ee
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--KM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--~~  105 (359)
                      .+++|||||++|++++.                        .|.+++|+|+|.+|++++.+ .+.+|+..++..+.  ..
T Consensus       137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~  215 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD  215 (365)
T ss_dssp             EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec
Confidence            47999999999876542                        79999999999999999865 55666666666543  34


Q ss_pred             ecCCCCeEEEEEecCCCEEEEecCCC----eEEEEEcCCCee----eEee---cCCceeEEEcCCC--cEEEEcCCcEEE
Q 040274          106 LYHQGPVSALAFHPNGHLMATTGKEC----KIKIWDLRKYEV----LQTL---TGHAKTLDFSQKG--LLAVGTGSFAQI  172 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~~l~s~~~d~----~i~vwd~~~~~~----~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v  172 (359)
                      ..|...|.+++|+|++.++++++.|+    .+++||+.....    ...+   ...|++++|||+|  +++++.|++|+|
T Consensus       216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL  295 (365)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence            47889999999999999999999887    688999877643    2233   3458999999999  777889999999


Q ss_pred             EcCCCCCccccc-cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          173 LGDFSGSHNYSR-YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       173 ~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ||+.+. ..+.. ..+|..    .|++++|+|||++|++|+.|++++||.-
T Consensus       296 wd~~~~-~~~~~~~~gH~~----~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          296 VKLKDL-SMSKIFKQAHSF----AITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EETTTT-EEEEEETTSSSS----CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             EECCCC-cEEEEecCcccC----CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            997655 44444 345654    8999999999999999999998887754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=4.3e-24  Score=208.01  Aligned_cols=162  Identities=20%  Similarity=0.325  Sum_probs=143.5

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .+++|+|||++|++++.                      .|++++|+|++.+|++++.|+.|++||. ++..+..+.+|.
T Consensus       389 ~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~  467 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS  467 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence            78999999999999875                      7899999999999999999999999996 467788899999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      ..|++++|+|++.+|++++.|+.|++||. +++++..+.   +.|++++|+|+|  +++++.|+.|+|||. . +.....
T Consensus       468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~-~~~~~~  544 (577)
T 2ymu_A          468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQT  544 (577)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T-SCEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C-CCEEEE
Confidence            99999999999999999999999999995 577777774   458999999999  778889999999994 3 355666


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +.+|..    .|++++|+|||++|++++.|+.+.+|.
T Consensus       545 ~~~h~~----~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          545 LTGHSS----SVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECCSS----CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            667754    899999999999999999999888773

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=6.3e-24  Score=209.07  Aligned_cols=168  Identities=10%  Similarity=0.208  Sum_probs=137.2

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEE---
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--LIK---  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--~~~---  104 (359)
                      ++++|+|||++|++++.                      .|++++|+|+|.+|++|+.||+|+|||+.++..  ...   
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~  101 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV  101 (611)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             eEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence            88999999999999875                      799999999999999999999999999864322  122   


Q ss_pred             -----------------------------------------eecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCe
Q 040274          105 -----------------------------------------MLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus       105 -----------------------------------------~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~  142 (359)
                                                               +.+|...|++++|+|++. .|++++.|++|++||..+++
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence                                                     234666677777777765 58899999999999999988


Q ss_pred             eeEeecC---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccc-------cccCCCCcceeEEEEccCCCEEEE
Q 040274          143 VLQTLTG---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYM-------GNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       143 ~~~~~~~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      ++.++.+   .|++++|+|+|  +++++.|++|++||+..+ .....+.       .|    ...|.+++|+|+|.+|++
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h----~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAH----SGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSS----SSCEEEEEECTTSSEEEE
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC-cEeeeecccccccccc----CCCEEEEEECCCCCEEEE
Confidence            8888854   58999999999  788899999999997554 3333331       34    348999999999999999


Q ss_pred             EeCCCeEEEEEcCC
Q 040274          211 GHSMGWSGILVPRS  224 (359)
Q Consensus       211 g~~dg~~~i~~~gs  224 (359)
                      |+.|+.+++|...+
T Consensus       257 ~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          257 ASADKTIKIWNVAT  270 (611)
T ss_dssp             EETTSEEEEEETTT
T ss_pred             EeCCCeEEEEeCCC
Confidence            99999999997543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.92  E-value=1.2e-23  Score=190.46  Aligned_cols=171  Identities=16%  Similarity=0.193  Sum_probs=143.5

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCC------CCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPF------NGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~------~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      ++++|+|++.+|++|+.                      .|.++.|+|.      +.+|++|+.|+.|++||+.+.....
T Consensus       111 ~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  190 (319)
T 3frx_A          111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA  190 (319)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence            89999999999999886                      5788999985      4489999999999999999999889


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~  180 (359)
                      .+.+|...|++++|+|+|.+|++++.|+.|++||+.+++++..+  ...+.+++|+|++ +++++.++.+.+|++... .
T Consensus       191 ~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~-~  269 (319)
T 3frx_A          191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-Y  269 (319)
T ss_dssp             EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE-E
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC-e
Confidence            99999999999999999999999999999999999999988888  4568999999999 777777888999996432 2


Q ss_pred             ccccccc----ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          181 NYSRYMG----NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       181 ~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ....+..    +...+...+.+++|+|+|++|++|+.||.+++|...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            2211111    111123468999999999999999999988888643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=3.1e-24  Score=198.05  Aligned_cols=146  Identities=11%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             eeEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           70 TDLMRVNPFNGVVSLGH--SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +.+++|||||+++++++  .|++|+|||+.++.++..+. |.+.|++++|+|+|.+|++++.| .+.+|+..++..+...
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK  213 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee
Confidence            56899999999876554  78999999999999888874 78889999999999999999855 5677777777655433


Q ss_pred             -----cCCceeEEEcCCC--cEEEEcCC----cEEEEcCCCCCccc---cccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          148 -----TGHAKTLDFSQKG--LLAVGTGS----FAQILGDFSGSHNY---SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       148 -----~~~v~~~~~s~~g--l~~~~~d~----~i~v~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                           ...+.+++|+|+|  +++++.++    .+.+|++.......   ..+..|    ...|++++|+|+|++|++|+.
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR----FKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS----CSCEEEEEECTTSCEEEEEET
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC----CCCeEeEEECCCCCceEEEcC
Confidence                 2348999999999  67777765    57888864432211   223334    347999999999999999999


Q ss_pred             CCeEEEEE
Q 040274          214 MGWSGILV  221 (359)
Q Consensus       214 dg~~~i~~  221 (359)
                      |+.++||.
T Consensus       290 D~~V~iwd  297 (365)
T 4h5i_A          290 DNSIALVK  297 (365)
T ss_dssp             TSCEEEEE
T ss_pred             CCEEEEEE
Confidence            99988843

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.7e-24  Score=195.95  Aligned_cols=170  Identities=14%  Similarity=0.195  Sum_probs=143.9

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--ce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSA--LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~--~~  102 (359)
                      .+++|+|+|++|++|+.                         .|++++|+|+  +.+|++|+.||.|++||+.++.  .+
T Consensus        15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~   94 (379)
T 3jrp_A           15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI   94 (379)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe
Confidence            89999999999999975                         7999999987  8999999999999999999886  67


Q ss_pred             EEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCee--eEee---cCCceeEEEcC-------------CC--
Q 040274          103 IKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEV--LQTL---TGHAKTLDFSQ-------------KG--  160 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~--~~~~---~~~v~~~~~s~-------------~g--  160 (359)
                      ..+..|...|++++|+|+  +.+|++++.|+.|++||++++..  ...+   ...+.+++|+|             ++  
T Consensus        95 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T 3jrp_A           95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  174 (379)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred             eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence            778889999999999999  99999999999999999998743  2222   45689999999             56  


Q ss_pred             cEEEEcCCcEEEEcCCCCCccc---cccccccCCCCcceeEEEEccC---CCEEEEEeCCCeEEEEEcCCC
Q 040274          161 LLAVGTGSFAQILGDFSGSHNY---SRYMGNSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~---~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +++++.|+.|++||+.......   ..+..|    ...|.+++|+|+   +.+|++++.||.+.+|....+
T Consensus       175 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EEEEeCCCeEEEEEecCCCcceeeEEEEecc----cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            8888899999999976543222   233344    348999999999   899999999999999876554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=8.6e-24  Score=205.90  Aligned_cols=163  Identities=18%  Similarity=0.321  Sum_probs=143.6

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .+++|+|+|++|++++.                      .|.+++|+|++.+|++|+.|+.|++||. +++.+..+.+|.
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~  426 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  426 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC
Confidence            78999999999999876                      7899999999999999999999999996 467788899999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      ..|++++|+|++.+|++++.|+.|++||+. ++.+..+   ...|++++|+|+|  +++++.|+.|++||. ++ .....
T Consensus       427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~-~~~~~  503 (577)
T 2ymu_A          427 SSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLLQT  503 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS-CEEEE
T ss_pred             CCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC-CEEEE
Confidence            999999999999999999999999999964 5666666   4568999999999  777888999999994 33 45566


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +..|..    .|++++|+|+|++|++|+.||.+++|..
T Consensus       504 ~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          504 LTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EECCSS----CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            666654    8999999999999999999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=6.2e-25  Score=202.65  Aligned_cols=171  Identities=14%  Similarity=0.146  Sum_probs=137.0

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---ceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---LLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---~~~  103 (359)
                      ++++|+|||++|++|+.                         .|++++|+|++.+|++|+.||+|++||+.++.   +..
T Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~   94 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL   94 (377)
T ss_dssp             SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred             EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence            88999999999999865                         79999999999999999999999999999877   677


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe---eeEee----cCCceeEEEcCCC--cEEEEcCCcEEEEc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE---VLQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILG  174 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~---~~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d  174 (359)
                      .+.+|...|++++|+|++.+|++++.|+.|++||++++.   .+..+    .+.|++++|+|++  +++++.|+.|++||
T Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  174 (377)
T 3dwl_C           95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLS  174 (377)
T ss_dssp             ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred             EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            788999999999999999999999999999999999876   34555    3458999999999  78888999999999


Q ss_pred             CCCCC-----------------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          175 DFSGS-----------------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       175 ~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      +....                 .....+ .    +...|++++|+|++.+|++|+.||.+.+|....+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          175 AYVRDVDAKPEASVWGSRLPFNTVCAEY-P----SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             ECCSSCC-CCCSCSSCSCCCEEEEEECC-C----CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEecccCCCccccccccccchhhhhhcc-c----CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            74221                 122222 3    445899999999999999999999999988776654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=2.1e-24  Score=195.12  Aligned_cols=169  Identities=10%  Similarity=0.109  Sum_probs=139.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--ce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSA--LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~--~~  102 (359)
                      ++++|+|+|++|++|+.                         .|.+++|+|  ++.+|++|+.|++|++||+.++.  .+
T Consensus        17 ~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           17 HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS   96 (316)
T ss_dssp             EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred             EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE
Confidence            89999999999999986                         789999986  48899999999999999999874  56


Q ss_pred             EEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCee---eEee---cCCceeEEEcCC---------------
Q 040274          103 IKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEV---LQTL---TGHAKTLDFSQK---------------  159 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~---~~~~---~~~v~~~~~s~~---------------  159 (359)
                      ..+.+|...|++++|+|+  +.+|++++.|++|++||++.+..   ...+   ...+.+++|+|+               
T Consensus        97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A           97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred             EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence            677899999999999997  78999999999999999987532   2233   345789999997               


Q ss_pred             --C--cEEEEcCCcEEEEcCCCCC--ccccccccccCCCCcceeEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 040274          160 --G--LLAVGTGSFAQILGDFSGS--HNYSRYMGNSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       160 --g--l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~g~~dg~~~i~~~gs  224 (359)
                        +  +++++.|+.|++||+....  .....+..|.    ..|.+++|+|++    .+|++|+.||.+.||....
T Consensus       177 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~----~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS----DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS----SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccceEEEecCCCeEEEEEeCCCCccceeeecccCC----CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence              3  6778889999999975332  2334455554    389999999987    8999999999999997644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=1e-23  Score=190.73  Aligned_cols=171  Identities=13%  Similarity=0.146  Sum_probs=141.8

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCC---
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTS---   99 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~---   99 (359)
                      .+++|+|+|++|++|+.                           .|++++|+|  ++.+|++|+.||.|++||+.++   
T Consensus        15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~   94 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE   94 (351)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCT
T ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccc
Confidence            89999999999999886                           799999999  5999999999999999999887   


Q ss_pred             ------cceEEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCee----------------------------
Q 040274          100 ------ALLIKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEV----------------------------  143 (359)
Q Consensus       100 ------~~~~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~----------------------------  143 (359)
                            .++..+..|.+.|++++|+|+  +.+|++++.|+.|++||+++++.                            
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (351)
T 3f3f_A           95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS  174 (351)
T ss_dssp             TSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE
T ss_pred             ccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE
Confidence                  457778899999999999999  99999999999999999875432                            


Q ss_pred             --------------------------------eEee---cCCceeEEEcCCC------cEEEEcCCcEEEEcCCCCC---
Q 040274          144 --------------------------------LQTL---TGHAKTLDFSQKG------LLAVGTGSFAQILGDFSGS---  179 (359)
Q Consensus       144 --------------------------------~~~~---~~~v~~~~~s~~g------l~~~~~d~~i~v~d~~~~~---  179 (359)
                                                      +..+   .+.|++++|+|++      +++++.|+.|++||+....   
T Consensus       175 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  254 (351)
T 3f3f_A          175 WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL  254 (351)
T ss_dssp             ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---
T ss_pred             eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence                                            2222   2357899999995      7888899999999975431   


Q ss_pred             ------------------------------------------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          180 ------------------------------------------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       180 ------------------------------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                                                                .....+..|    ...|++++|+|++.+|++|+.||.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH----NGEVWSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             ------------------------------------CCSEEEEEEEEECTT----SSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc----cccEEEEEEcCCCCEEEEecCCCcE
Confidence                                                      112223333    3489999999999999999999988


Q ss_pred             EEEEcCCCC
Q 040274          218 GILVPRSSE  226 (359)
Q Consensus       218 ~i~~~gs~~  226 (359)
                      .+|....+.
T Consensus       331 ~iw~~~~~~  339 (351)
T 3f3f_A          331 RLWKATYSN  339 (351)
T ss_dssp             EEEEECTTS
T ss_pred             EEEecCcCc
Confidence            888776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=3.9e-23  Score=186.74  Aligned_cols=164  Identities=16%  Similarity=0.270  Sum_probs=142.6

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ce
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--~~  102 (359)
                      .+++|+|+|++|++++.                           .|.+++|+|++.+|++|+.||.|++||+.++.  ..
T Consensus        55 ~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  134 (337)
T 1gxr_A           55 CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             CEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred             EEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee
Confidence            89999999999999877                           58999999999999999999999999999887  56


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      ..+..|...|++++|+|++.+|++++.|+.|++||+++++.+..+.   +.+.+++|+|++  +++++.|+.|.+||+..
T Consensus       135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            6777899999999999999999999999999999999998888773   568999999999  77888899999999765


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      . .....+ .+    ...+.+++|+|++.+|++++.+|.+.+|.
T Consensus       215 ~-~~~~~~-~~----~~~v~~~~~s~~~~~l~~~~~~~~i~~~~  252 (337)
T 1gxr_A          215 G-RQLQQH-DF----TSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             T-EEEEEE-EC----SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             C-ceEeee-cC----CCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            4 333332 22    23799999999999999999999887743

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=5.8e-24  Score=200.71  Aligned_cols=173  Identities=10%  Similarity=0.019  Sum_probs=139.4

Q ss_pred             eEEEECC-CCCEEEEecc-------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPS-SGRYMAVAGR-------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~-------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      ++|+|+| ++++||+|+.                         .|++|+|+| ++.+|++|+.||+|++||+.++.....
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~  202 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF  202 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence            7999999 6778999876                         799999999 688999999999999999987644333


Q ss_pred             eec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCC
Q 040274          105 MLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDF  176 (359)
Q Consensus       105 ~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~  176 (359)
                      ...  +...+.+++|+|++.+|++|+.||.|++||++. +.+..+   ...|++++|+|++   +++++.|+.|+|||+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            332  344678999999999999999999999999874 455555   4568999999987   5577889999999976


Q ss_pred             CCCccccc--cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCce
Q 040274          177 SGSHNYSR--YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNF  229 (359)
Q Consensus       177 ~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~  229 (359)
                      ........  ...|    ...|++++|+|+|.+|++|+.||.+.||....++...
T Consensus       282 ~~~~~~~~~~~~~h----~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          282 QVRGKASFLYSLPH----RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             TCCSSSCCSBCCBC----SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             cccccceEEEeeec----cccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            65322222  2233    4489999999999999999999999999887665443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.92  E-value=3.4e-23  Score=185.40  Aligned_cols=170  Identities=14%  Similarity=0.133  Sum_probs=137.7

Q ss_pred             eEEEECC--CCCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--
Q 040274           52 ILWILPS--SGRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSA--  100 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~--  100 (359)
                      ++++|+|  +|++|++|+.                         .|.+++|+|+  +.+|++|+.||.|++||+.++.  
T Consensus        57 ~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~  136 (297)
T 2pm7_B           57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT  136 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred             EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence            8999986  4899999876                         6889999997  8899999999999999998763  


Q ss_pred             ceEEeecCCCCeEEEEEecC-------------CCEEEEecCCCeEEEEEcCCCe----eeEeec---CCceeEEEcCC-
Q 040274          101 LLIKMLYHQGPVSALAFHPN-------------GHLMATTGKECKIKIWDLRKYE----VLQTLT---GHAKTLDFSQK-  159 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p~-------------g~~l~s~~~d~~i~vwd~~~~~----~~~~~~---~~v~~~~~s~~-  159 (359)
                      ....+.+|...|++++|+|+             +.+|++|+.|++|++||++++.    .+.++.   +.|.+++|+|+ 
T Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            24567799999999999997             5799999999999999998765    445554   45899999998 


Q ss_pred             --C--cEEEEcCCcEEEEcCCCCCccc--cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          160 --G--LLAVGTGSFAQILGDFSGSHNY--SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       160 --g--l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        +  +++++.|++|+|||+.......  ..+..+ . +...|.+++|+|+|.+|++|+.||.+++|...
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE-K-FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS-C-CSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecc-c-CCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence              3  7888899999999975532111  122111 1 33479999999999999999999988888754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=2.1e-23  Score=208.29  Aligned_cols=169  Identities=12%  Similarity=0.153  Sum_probs=145.8

Q ss_pred             eEEEECCCC-CEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSG-RYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg-~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      ++++|+|++ .+|++|+.                            .|.+++|+|++.+|++|+.||+|+|||+.++..+
T Consensus       386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~  465 (694)
T 3dm0_A          386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST  465 (694)
T ss_dssp             EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce
Confidence            899999864 78888876                            5899999999999999999999999999999999


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee------cCCceeEEEcCCC----cEEEEcCCcEEE
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG----LLAVGTGSFAQI  172 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g----l~~~~~d~~i~v  172 (359)
                      ..+.+|...|++++|+|++.+|++++.|++|++||+.........      ...|.+++|+|++    +++++.|++|++
T Consensus       466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v  545 (694)
T 3dm0_A          466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV  545 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE
Confidence            999999999999999999999999999999999998754332222      2348999999986    788899999999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ||+... .....+..|..    .|++++|+|++.+|++|+.||.+++|...++
T Consensus       546 wd~~~~-~~~~~~~~h~~----~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          546 WNLSNC-KLRSTLAGHTG----YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             EETTTC-CEEEEECCCSS----CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             EECCCC-cEEEEEcCCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            997554 45555666644    8999999999999999999999999876554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=8.7e-24  Score=197.65  Aligned_cols=167  Identities=14%  Similarity=0.194  Sum_probs=140.0

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .+++|+|+|++|++++.                      .+....|+|++.+|++|+.||.|++||+.++.....+.+|.
T Consensus        60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  139 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV  139 (420)
T ss_dssp             TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS
T ss_pred             cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc
Confidence            57899999999999885                      34445789999999999999999999999998888888999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      +.|++++|+|++.+|++++.|+.|++||+.+++.+..+.   +.|++++|+|++  +++++.|+.|++||+... .....
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~  218 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHT  218 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEE
Confidence            999999999999999999999999999999998887774   568999999999  888889999999997654 44444


Q ss_pred             cccccCCCC---------------------cceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          185 YMGNSMVKG---------------------YQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       185 ~~~~~~~~~---------------------~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      +..+.. +.                     ..+.+++|+|++.+|++|+.||.+.+|
T Consensus       219 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          219 FNRKEN-PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             ECBTTB-TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             eecCCC-CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            443322 22                     245556668999999999999988774

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=2e-23  Score=208.37  Aligned_cols=171  Identities=21%  Similarity=0.208  Sum_probs=144.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFN--GVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~--~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      .+++|+|+|++|++|+.                          .|.|++|+|++  ..|++|+.||+|++||+.++....
T Consensus       476 ~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~  555 (694)
T 3dm0_A          476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS  555 (694)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE
Confidence            89999999999999886                          48999999976  689999999999999999999999


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~  180 (359)
                      .+.+|.+.|++++|+|+|.+|++|+.|+.|++||+++++.+..+  ...+.+++|+|++ +++++.++.|+|||+... .
T Consensus       556 ~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~-~  634 (694)
T 3dm0_A          556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK-S  634 (694)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTT-E
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC-C
Confidence            99999999999999999999999999999999999999988877  4568999999999 888888899999997654 3


Q ss_pred             cccccccccC---------------CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          181 NYSRYMGNSM---------------VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       181 ~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ....+..+..               .+...+++++|+|+|.+|++|+.||.++||..+
T Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            2222211100               011137899999999999999999988887643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-24  Score=206.08  Aligned_cols=166  Identities=9%  Similarity=0.035  Sum_probs=138.5

Q ss_pred             eEEEECCC------CCEEEEecc----------------------------------ceeEEEEcCCCCEEEEEeCCCeE
Q 040274           52 ILWILPSS------GRYMAVAGR----------------------------------RTDLMRVNPFNGVVSLGHSGGTV   91 (359)
Q Consensus        52 ~~l~~spd------g~~l~~~~~----------------------------------~v~~l~~sp~~~~l~tg~~dg~v   91 (359)
                      ++++|+|+      +.+||+++.                                  .|++++|+|++ .|++|+.||+|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEE
Confidence            78999986      578988775                                  36789999864 89999999999


Q ss_pred             EEEeCCCC-cceEEeecCCCCeEEE--EEecCC-CEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC--
Q 040274           92 TMWKPTTS-ALLIKMLYHQGPVSAL--AFHPNG-HLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG--  160 (359)
Q Consensus        92 ~lwd~~~~-~~~~~~~~h~~~v~~l--~~~p~g-~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g--  160 (359)
                      ++||+.++ .+...+.+|.+.|+++  .|+|+| .+|+||+.|++|+|||+++++++.++.     +.+.+++|+|++  
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~  369 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS  369 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe
Confidence            99999976 4556688999999999  568888 899999999999999999887655542     247899999998  


Q ss_pred             cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          161 LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +++++.|++|++||+... .....+.+|..    .|++++|+|+|.+|++|+.||.+++|...
T Consensus       370 l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~----~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAA-FAVHPLVSRET----TITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEEECSSSEEEEEETTCT-TCCEEEEECSS----CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             EEEeCCCCcEEEEECccc-ccceeeecCCC----ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            777788899999997654 44445566654    89999999999999999999999988653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=7.1e-23  Score=189.45  Aligned_cols=164  Identities=8%  Similarity=0.035  Sum_probs=138.3

Q ss_pred             eEEEECCCC-CEEEEecc-------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSG-RYMAVAGR-------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg-~~l~~~~~-------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      ++++|+|+| ++|++|+.                         .|.+++|+| ++.+|++|+.||.|++||+.+ ..+..
T Consensus        77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~  155 (383)
T 3ei3_B           77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQV  155 (383)
T ss_dssp             EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEE
T ss_pred             EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEE
Confidence            999999999 99999876                         789999999 779999999999999999985 55555


Q ss_pred             eecC---CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcC
Q 040274          105 MLYH---QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGD  175 (359)
Q Consensus       105 ~~~h---~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~  175 (359)
                      +..|   ...|.+++|+|++.+|++++.|+.|++||++ +.++..+   .+.|.+++|+|++   +++++.|+.|++||+
T Consensus       156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  234 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDL  234 (383)
T ss_dssp             EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred             EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence            5544   4889999999999999999999999999994 6666666   4568999999998   677888999999997


Q ss_pred             CCCC---ccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 040274          176 FSGS---HNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       176 ~~~~---~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~  222 (359)
                      ....   .....+ .|.    ..|.+++|+| ++.+|++++.||.+.+|..
T Consensus       235 ~~~~~~~~~~~~~-~~~----~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          235 RNIKDKNSYIAEM-PHE----KPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             GGCCSTTCEEEEE-ECS----SCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             CCCCcccceEEEe-cCC----CceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            6532   122222 343    4899999999 9999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.3e-23  Score=193.16  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=142.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc---
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSA---  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~---  100 (359)
                      .+++|+|+|.+|++++.                           .|++++|+|+ +.+|++|+.||.|++||+.++.   
T Consensus        71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred             EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            89999999999999865                           7999999998 8999999999999999999876   


Q ss_pred             ---ceEE---eecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEeec---------CCceeEEEcCCC---c
Q 040274          101 ---LLIK---MLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQTLT---------GHAKTLDFSQKG---L  161 (359)
Q Consensus       101 ---~~~~---~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~~~---------~~v~~~~~s~~g---l  161 (359)
                         ....   +..|...|++++|+|+ +.+|++++.|+.|++||+++++.+..+.         ..+.+++|+|++   +
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  230 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV  230 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred             ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence               3333   3579999999999998 7899999999999999999998887773         348999999997   6


Q ss_pred             EEEEcCC---cEEEEcCCCCCccccccc-cccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEE
Q 040274          162 LAVGTGS---FAQILGDFSGSHNYSRYM-GNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       162 ~~~~~d~---~i~v~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~  221 (359)
                      ++++.++   .|++||+.........+. .|..    .|.+++|+| ++.+|++|+.||.+.+|.
T Consensus       231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQK----GILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS----CEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             EEEECCCCCceEEEEeCCCCCCCcEEeecCccC----ceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            6677777   999999876545555555 5543    899999999 999999999999988743

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=1.3e-22  Score=189.20  Aligned_cols=173  Identities=14%  Similarity=0.197  Sum_probs=146.4

Q ss_pred             eEEEECC-CCCEEEEecc------------------------------ceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------------RTDLMRVNPFN-GVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------------~v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~   99 (359)
                      .+++|+| ++++|++|+.                              .|++++|+|++ .+|++|+.||.|++||+.++
T Consensus        85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  164 (402)
T 2aq5_A           85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG  164 (402)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence            8999999 9999999876                              68999999997 69999999999999999999


Q ss_pred             cceEEe--ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cC----CceeEEEcCCC-cEEEE----cC
Q 040274          100 ALLIKM--LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TG----HAKTLDFSQKG-LLAVG----TG  167 (359)
Q Consensus       100 ~~~~~~--~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~----~v~~~~~s~~g-l~~~~----~d  167 (359)
                      +.+..+  .+|.+.|++++|+|++.+|++++.|+.|++||+++++.+..+ ..    .+.++.|+|+| +++++    .+
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d  244 (402)
T 2aq5_A          165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE  244 (402)
T ss_dssp             EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred             CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence            999998  789999999999999999999999999999999999988877 32    27899999999 55554    78


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE-EeCCCeEEEEEcCCCCC
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI-GHSMGWSGILVPRSSEP  227 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-g~~dg~~~i~~~gs~~~  227 (359)
                      +.|.+||+.............   +...|.+++|+|++.+|++ |+.||.+.+|....+.+
T Consensus       245 ~~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          245 RQVALWDTKHLEEPLSLQELD---TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEEEEETTBCSSCSEEEECC---CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             ceEEEEcCccccCCceEEecc---CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            999999976654333222211   2336999999999999964 55799999998876664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.2e-23  Score=193.90  Aligned_cols=166  Identities=12%  Similarity=0.120  Sum_probs=136.4

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---ce
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA---LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~---~~  102 (359)
                      ++++|+|+|++|++++.                          .|.+++|+|++.+|++|+.|+.|++||+.++.   ..
T Consensus        59 ~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  138 (377)
T 3dwl_C           59 TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS  138 (377)
T ss_dssp             EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence            89999999999999886                          78999999999999999999999999999876   46


Q ss_pred             EEeec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEcC------------------CCeeeEee--cCCceeEEEcCCC-
Q 040274          103 IKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLR------------------KYEVLQTL--TGHAKTLDFSQKG-  160 (359)
Q Consensus       103 ~~~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~------------------~~~~~~~~--~~~v~~~~~s~~g-  160 (359)
                      ..+.. |...|++++|+|++.+|++++.|+.|++||+.                  .+.++..+  .+.|++++|+|+| 
T Consensus       139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS
T ss_pred             eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC
Confidence            77777 99999999999999999999999999999985                  34455554  3458999999999 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCcc---ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHN---YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       +++++.|+.|++||+......   ...+..|..    .|.+++|+|++.+|++|+.++.+.++.
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL----PLRSLLWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSS----CEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC----ceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence             778889999999997665332   444555543    799999999999999998888764433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=7.4e-23  Score=207.24  Aligned_cols=165  Identities=8%  Similarity=0.072  Sum_probs=141.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|||+|.+|++++.                       .|++++|+|++.+|++|+.||.|++||+.++..+..+.+|
T Consensus        17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~   96 (814)
T 3mkq_A           17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH   96 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            89999999999999876                       7999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC-eeeEee---cCCceeEEEcC-CC--cEEEEcCCcEEEEcCCCCCcc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKY-EVLQTL---TGHAKTLDFSQ-KG--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~-~~~~~~---~~~v~~~~~s~-~g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      .+.|++++|+|++.+|++++.||.|++||+.++ .....+   ...+.+++|+| ++  +++++.|+.|.+||+... ..
T Consensus        97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-~~  175 (814)
T 3mkq_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TP  175 (814)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-SC
T ss_pred             CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cc
Confidence            999999999999999999999999999999986 555555   45689999999 66  888889999999997554 33


Q ss_pred             ccccccccCCCCcceeEEEEcc--CCCEEEEEeCCCeEEEE
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~g~~dg~~~i~  220 (359)
                      ...+..+   +...+.+++|+|  ++.+|++|+.+|.+.+|
T Consensus       176 ~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~  213 (814)
T 3mkq_A          176 NFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKIW  213 (814)
T ss_dssp             SEEEECC---CTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred             eeEEecC---CCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            3333333   223688888888  88888888888877663

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=1.6e-22  Score=185.62  Aligned_cols=170  Identities=9%  Similarity=0.031  Sum_probs=142.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK--  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~--  104 (359)
                      ++++|+|+|++|++++.                         .|++++|+|++.+|++|+.||.|++||+.+++....  
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence            89999999999999965                         789999999999999999999999999988865444  


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee---eEee----cCCceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV---LQTL----TGHAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---~~~~----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      +..|...|++++|+|++.+|++++.|+.|++||+..+..   ...+    ...+.+++|+|++  +++++.|+.|++||+
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence            457999999999999999999999999999999988652   2333    3568999999999  778888999999996


Q ss_pred             CC-----------------CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          176 FS-----------------GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       176 ~~-----------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ..                 .......+..|    ...|.+++|+|++.+|++++.||.+.+|....+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          172 YIKEVEERPAPTPWGSKMPFGELMFESSSS----CGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCC----SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ccccccccccccccccccchhhheEecCCC----CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            32                 12333344444    348999999999999999999999998766544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.7e-22  Score=187.09  Aligned_cols=163  Identities=19%  Similarity=0.241  Sum_probs=137.4

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT-TSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~-~~~~~~~~~~  107 (359)
                      .+++|+|+|++|++|+.                       .|.+++|+  +.+|++|+.||.|.+||+. ....+..+.+
T Consensus       138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  215 (401)
T 4aez_A          138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQG  215 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence            89999999999999875                       78999994  5699999999999999999 4566788889


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEE---cCCcEEEEcCCCCC
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVG---TGSFAQILGDFSGS  179 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~---~d~~i~v~d~~~~~  179 (359)
                      |.+.|.+++|+|++.+|++++.|+.|++||++++.++..+   ...|.+++|+|++  +++++   .|+.|++||+... 
T Consensus       216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-  294 (401)
T 4aez_A          216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-  294 (401)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-
Confidence            9999999999999999999999999999999998888777   4568999999987  55543   5899999997654 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEE--EeCCCeEEEEEc
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI--GHSMGWSGILVP  222 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--g~~dg~~~i~~~  222 (359)
                      .....+. +    ...|.+++|+|++.+|++  |+.+|.+.+|..
T Consensus       295 ~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          295 ARVNTVD-A----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CEEEEEE-C----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             CEEEEEe-C----CCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            4444443 2    237999999999999999  448998887543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-22  Score=185.70  Aligned_cols=169  Identities=13%  Similarity=0.158  Sum_probs=146.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|+|++|++++.                       .|.+++|+|++.+|++++.||.|++||+.+++.+..+. |
T Consensus        36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~  114 (369)
T 3zwl_B           36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-S  114 (369)
T ss_dssp             EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-C
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-c
Confidence            89999999999999876                       79999999999999999999999999999999888886 8


Q ss_pred             CCCeEEEEEecCCCEEEEecCC-----CeEEEEEcCCCee-----------eEee---cC--CceeEEEcCCC--cEEEE
Q 040274          109 QGPVSALAFHPNGHLMATTGKE-----CKIKIWDLRKYEV-----------LQTL---TG--HAKTLDFSQKG--LLAVG  165 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~~~-----------~~~~---~~--~v~~~~~s~~g--l~~~~  165 (359)
                      ...|.+++|+|++.+|++++.+     +.|.+||+.....           +..+   .+  .+.+++|+|++  +++++
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence            8999999999999999999998     9999999976532           1222   12  68999999999  77888


Q ss_pred             cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          166 TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .++.|.+||+.........+..|..    .|.+++|+|++.+|++++.||.+.+|....+
T Consensus       195 ~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          195 KDGKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             TTSEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            8999999997764455666666644    8999999999999999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.3e-23  Score=194.22  Aligned_cols=145  Identities=10%  Similarity=0.194  Sum_probs=117.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC-----CeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG-----PVSALAFHPNGHLMATTGKECKIKIWDLRKYE-  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~-----~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-  142 (359)
                      .|.+++|||+|.+|++++.||.|++||..+  ++..+. |..     .|.+++|||||++|++|+.||+|++||+.++. 
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            699999999999999999999999999554  566666 666     49999999999999999999999999999874 


Q ss_pred             ------eeEee----c---CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcc--cccc-ccccCCCCcceeEEEEccCCC
Q 040274          143 ------VLQTL----T---GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHN--YSRY-MGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       143 ------~~~~~----~---~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~--~~~~-~~~~~~~~~~v~~~~~sp~~~  206 (359)
                            .+.++    .   +.|.+++|+|+|+++++.|++|++||+......  ...+ ..|.    ..|.+++|+  |.
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~----~~V~svaFs--g~  237 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASR----RKITDLKIV--DY  237 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCS----SCCCCEEEE--TT
T ss_pred             ccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeeccccc----CcEEEEEEE--CC
Confidence                  24555    2   368999999999888889999999997554311  1223 2343    379999999  68


Q ss_pred             EEEEEeCCCeEEEEEcC
Q 040274          207 VLGIGHSMGWSGILVPR  223 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~g  223 (359)
                      +|++++ ++.+.+|...
T Consensus       238 ~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             EEEEEC-SSEEEEEETT
T ss_pred             EEEEEe-CCeEEEEECC
Confidence            999987 5888876543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.90  E-value=2e-22  Score=184.85  Aligned_cols=168  Identities=15%  Similarity=0.114  Sum_probs=141.7

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeC--------
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKP--------   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~--------   96 (359)
                      .+++|+|+|++|++++.                           .|.+++|+|++.+|++|+.||.|++||+        
T Consensus       100 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  179 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER  179 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred             eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccc
Confidence            89999999999999875                           6899999999999999999999999995        


Q ss_pred             ----------CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC-cE
Q 040274           97 ----------TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG-LL  162 (359)
Q Consensus        97 ----------~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g-l~  162 (359)
                                .++.++..+.+|...|++++|+|++.+|++++.|+.|++||+++++++..+.   ..+.+++|+|+| ++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  259 (372)
T 1k8k_C          180 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  259 (372)
T ss_dssp             CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             ccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEE
Confidence                      4677888888999999999999999999999999999999999999888883   468999999999 77


Q ss_pred             EEEcCCcEEEEcCCC--CCc-c-----------------c-------------------ccc-ccccCCCCcceeEEEEc
Q 040274          163 AVGTGSFAQILGDFS--GSH-N-----------------Y-------------------SRY-MGNSMVKGYQIGKVSFR  202 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~--~~~-~-----------------~-------------------~~~-~~~~~~~~~~v~~~~~s  202 (359)
                      +++.|+.|++|++..  +.. .                 .                   ..+ .+    |...|++++|+
T Consensus       260 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~  335 (372)
T 1k8k_C          260 AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL----HKNSVSQISVL  335 (372)
T ss_dssp             EEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS----SSSCEEEEEEE
T ss_pred             EEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccc----ccCCcceeEEe
Confidence            778999999999755  200 0                 0                   111 13    44589999977


Q ss_pred             -cCC---CEEEEEeCCCeEEEEEcC
Q 040274          203 -PYE---DVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       203 -p~~---~~l~~g~~dg~~~i~~~g  223 (359)
                       ++|   .+|++|+.||.+.+|...
T Consensus       336 ~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          336 SGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cCCCcceeeEEEecCCCceEEEEec
Confidence             566   899999999977777653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=8.5e-23  Score=192.70  Aligned_cols=146  Identities=17%  Similarity=0.211  Sum_probs=119.5

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcce--EEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALL--IKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      .|+||+||| ++.+|++|+.||.|+|||+.++...  ..+.+|.+.|++|+|+| ++.+|++|+.||+|++||+.+....
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            699999999 5679999999999999999877543  44568999999999998 7899999999999999999876443


Q ss_pred             Eee-----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEeCCCe
Q 040274          145 QTL-----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHSMGW  216 (359)
Q Consensus       145 ~~~-----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~  216 (359)
                      ...     ...+.+++|+|++  +++++.||.|++||+..  .....+..|..    .|++++|+|++. +|++|+.|+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~----~v~~v~~~p~~~~~~~s~s~d~~  274 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG--KELWNLRMHKK----KVTHVALNPCCDWFLATASVDQT  274 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS--CBCCCSBCCSS----CEEEEEECTTCSSEEEEEETTSB
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc--ceeEEEecccc----eEEeeeecCCCceEEEEecCcce
Confidence            222     2346899999999  77788899999999643  34445555544    899999999986 7889999998


Q ss_pred             EEEE
Q 040274          217 SGIL  220 (359)
Q Consensus       217 ~~i~  220 (359)
                      +.||
T Consensus       275 v~iw  278 (435)
T 4e54_B          275 VKIW  278 (435)
T ss_dssp             CCEE
T ss_pred             eeEE
Confidence            7774

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.1e-22  Score=182.12  Aligned_cols=166  Identities=13%  Similarity=0.176  Sum_probs=144.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------------ceeEEEEcCCCCEEEEEeCCCe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------------RTDLMRVNPFNGVVSLGHSGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------------~v~~l~~sp~~~~l~tg~~dg~   90 (359)
                      .+++|+|+|++|++++.                                         .+.+++|+|++.+|++|+.||.
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  198 (369)
T 3zwl_B          119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK  198 (369)
T ss_dssp             EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred             EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence            88999999999998642                                         5889999999999999999999


Q ss_pred             EEEEeCCC-CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEE
Q 040274           91 VTMWKPTT-SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVG  165 (359)
Q Consensus        91 v~lwd~~~-~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~  165 (359)
                      |++||+.+ +..+..+..|...|.+++|+|++.+|++++.|+.|++||+.++..+..+  ...+.+++|+|++  +++++
T Consensus       199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEee
Confidence            99999998 6888889899999999999999999999999999999999999888877  4568999999999  66666


Q ss_pred             cCC--------------cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          166 TGS--------------FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       166 ~d~--------------~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .++              .+.+||.... .....+..|..    .|++++|+|++.+|++|+.||.+.+|..
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             CCC-------------CEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             cCCCceEEEEecCCCcceeEEEecCCC-cchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            666              7999996554 55556666644    8999999999999999999997777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=2e-22  Score=184.18  Aligned_cols=169  Identities=13%  Similarity=0.115  Sum_probs=137.7

Q ss_pred             eEEEECCC----CCEEEEecc-----------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSS----GRYMAVAGR-----------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spd----g~~l~~~~~-----------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      ++++|+|+    |.+|++|+.                       .|++++|+| ++.+|++|+.||.|++||+.+++.+.
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence            88999998    678998876                       799999999 89999999999999999999999888


Q ss_pred             Ee---ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee------------------------------------
Q 040274          104 KM---LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL------------------------------------  144 (359)
Q Consensus       104 ~~---~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~------------------------------------  144 (359)
                      .+   .+|...|.+++|+|++.+|++++.|+.|++||+++++.+                                    
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            88   689999999999999999999999999999998754211                                    


Q ss_pred             ----------------------------------------------Eee---cCCceeEEEcCC--C--cEEEEcCCcEE
Q 040274          145 ----------------------------------------------QTL---TGHAKTLDFSQK--G--LLAVGTGSFAQ  171 (359)
Q Consensus       145 ----------------------------------------------~~~---~~~v~~~~~s~~--g--l~~~~~d~~i~  171 (359)
                                                                    ..+   ...+++++|+|+  |  +++++.||.|+
T Consensus       233 ~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          233 YVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             CCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             eEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence                                                          111   123667888888  7  66777889999


Q ss_pred             EEcCCCCCccc---cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          172 ILGDFSGSHNY---SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       172 v~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +||+.......   ..+..|.  +...|++++|+|++.+|++|+.||.+.+|..
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHK--CGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTT--CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEECCCCCCccccceEEcccc--cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            99976543221   1334441  2458999999999999999999998888753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.7e-23  Score=205.30  Aligned_cols=165  Identities=13%  Similarity=0.179  Sum_probs=140.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--ce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSA--LL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~--~~  102 (359)
                      .+++|+|+|++|++|+.                         .|++++|+|+  +.+|++|+.||.|++||+.++.  .+
T Consensus        13 ~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~   92 (753)
T 3jro_A           13 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI   92 (753)
T ss_dssp             EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc
Confidence            88999999999999875                         7999999987  8999999999999999999886  67


Q ss_pred             EEeecCCCCeEEEEEecC--CCEEEEecCCCeEEEEEcCCCee--eEee---cCCceeEEEcC-------------CC--
Q 040274          103 IKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEV--LQTL---TGHAKTLDFSQ-------------KG--  160 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~--g~~l~s~~~d~~i~vwd~~~~~~--~~~~---~~~v~~~~~s~-------------~g--  160 (359)
                      ..+.+|...|++++|+|+  +.+|++|+.||.|++||++++..  ...+   ...|.+++|+|             ++  
T Consensus        93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A           93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred             ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence            778899999999999999  99999999999999999988733  2222   45689999999             36  


Q ss_pred             cEEEEcCCcEEEEcCCCCCcc---ccccccccCCCCcceeEEEEccC---CCEEEEEeCCCeEEEE
Q 040274          161 LLAVGTGSFAQILGDFSGSHN---YSRYMGNSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSGIL  220 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~g~~dg~~~i~  220 (359)
                      +++++.||.|++||+......   ...+..|    ...|++++|+|+   +.+|++|+.||.+.+|
T Consensus       173 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             EEEEECCCeEEEEeccCCcccceeeeeecCC----CCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            888889999999997655322   2233344    348999999999   9999999999998874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.8e-22  Score=182.50  Aligned_cols=171  Identities=14%  Similarity=0.155  Sum_probs=140.8

Q ss_pred             eEEEECCC--CCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--
Q 040274           52 ILWILPSS--GRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSA--  100 (359)
Q Consensus        52 ~~l~~spd--g~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~--  100 (359)
                      ++++|+|+  +++|++++.                         .|.+++|+|+  +.+|++|+.||.|++||+.++.  
T Consensus        59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred             EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence            88999987  999999886                         7999999998  9999999999999999998873  


Q ss_pred             ceEEeecCCCCeEEEEEec-------------CCCEEEEecCCCeEEEEEcCCCe----eeEee---cCCceeEEEcCC-
Q 040274          101 LLIKMLYHQGPVSALAFHP-------------NGHLMATTGKECKIKIWDLRKYE----VLQTL---TGHAKTLDFSQK-  159 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p-------------~g~~l~s~~~d~~i~vwd~~~~~----~~~~~---~~~v~~~~~s~~-  159 (359)
                      ....+..|...|++++|+|             ++.+|++++.|+.|++||++++.    .+..+   .+.|.+++|+|+ 
T Consensus       139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  218 (379)
T 3jrp_A          139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  218 (379)
T ss_dssp             CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence            3456678999999999999             69999999999999999998764    33444   356899999999 


Q ss_pred             --C--cEEEEcCCcEEEEcCCCCCcccc-ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          160 --G--LLAVGTGSFAQILGDFSGSHNYS-RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       160 --g--l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        +  +++++.|+.|++||+........ ....... +...|++++|+|++.+|++++.||.+.+|...
T Consensus       219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC-CSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc-CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence              7  88888999999999766432211 1111111 34479999999999999999999999888754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.5e-22  Score=184.91  Aligned_cols=158  Identities=15%  Similarity=0.196  Sum_probs=134.4

Q ss_pred             eEEEECCC---CCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSS---GRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spd---g~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      ++++|+|+   |++|++|+.                         .|++++|+|++.+|++|+.||.|++||+.++..+.
T Consensus        43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  122 (368)
T 3mmy_A           43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ  122 (368)
T ss_dssp             EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee
Confidence            99999999   699999886                         79999999999999999999999999999887665


Q ss_pred             EeecCCCCeEEEEE--ecCCCEEEEecCCCeEEEEEcCCCeeeEee----------------------------------
Q 040274          104 KMLYHQGPVSALAF--HPNGHLMATTGKECKIKIWDLRKYEVLQTL----------------------------------  147 (359)
Q Consensus       104 ~~~~h~~~v~~l~~--~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----------------------------------  147 (359)
                       +..|...|++++|  +|++.+|++++.|+.|++||+++++++..+                                  
T Consensus       123 -~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  201 (368)
T 3mmy_A          123 -IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP  201 (368)
T ss_dssp             -EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSC
T ss_pred             -eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecccc
Confidence             5689999999999  889999999999999999998765422111                                  


Q ss_pred             --------------------------------------------------------cC---------------CceeEEE
Q 040274          148 --------------------------------------------------------TG---------------HAKTLDF  156 (359)
Q Consensus       148 --------------------------------------------------------~~---------------~v~~~~~  156 (359)
                                                                              .+               .|++++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (368)
T 3mmy_A          202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF  281 (368)
T ss_dssp             EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred             chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence                                                                    00               4788999


Q ss_pred             cCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          157 SQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       157 s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      +|+|  +++++.||.|++||+... .....+..|..    .|.+++|+|+|.+|++|+.|+
T Consensus       282 sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~----~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          282 HPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQ----PISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSS----CEEEEEECTTSSCEEEEECCC
T ss_pred             ecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCC----CceEEEECCCCCeEEEEeccc
Confidence            9999  788889999999997654 55555555543    899999999999999999887

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=3.7e-22  Score=188.07  Aligned_cols=170  Identities=14%  Similarity=0.162  Sum_probs=140.4

Q ss_pred             eEEEECCCCC-EEEEecc------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPSSGR-YMAVAGR------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~   99 (359)
                      ++++|+|++. +|++|+.                              .|.+++|+| ++.+|++|+.||.|++||++++
T Consensus       185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            8999999999 8888875                              589999999 7789999999999999999987


Q ss_pred             ---cceEEeecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCC-CeeeEee---cCCceeEEEcCCC---cEEEEcCC
Q 040274          100 ---ALLIKMLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRK-YEVLQTL---TGHAKTLDFSQKG---LLAVGTGS  168 (359)
Q Consensus       100 ---~~~~~~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~-~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~  168 (359)
                         .++..+..|...|++++|+|++. +|++|+.||.|++||+++ ..++..+   .+.|++++|+|++   +++++.|+
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence               57778889999999999999887 689999999999999998 4566666   4568999999998   67778899


Q ss_pred             cEEEEcCCCCCcc----------ccccccccCCCCcceeEEEEccCCC-EEEEEeCCCeEEEEEc
Q 040274          169 FAQILGDFSGSHN----------YSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHSMGWSGILVP  222 (359)
Q Consensus       169 ~i~v~d~~~~~~~----------~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~~~i~~~  222 (359)
                      .|.|||+......          ...+..+.. |...|.+++|+|++. +|++++.||.+.||..
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCC-CCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            9999997653211          122223322 445899999999999 8899998887777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.5e-22  Score=187.20  Aligned_cols=165  Identities=18%  Similarity=0.185  Sum_probs=133.9

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCC----CcceEE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTT----SALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~----~~~~~~  104 (359)
                      .+++|+|+|++|++|+.                      .|.+++|+|++. +|++|+.||.|++||+.+    +.++..
T Consensus       167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  246 (383)
T 3ei3_B          167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE  246 (383)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence            78999999999999876                      799999999998 999999999999999987    555555


Q ss_pred             eecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEeec--------------------CCceeEEEcCCC-cE
Q 040274          105 MLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLT--------------------GHAKTLDFSQKG-LL  162 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--------------------~~v~~~~~s~~g-l~  162 (359)
                      + +|...|++++|+| ++.+|++++.|+.|++||++++..+..+.                    +.+..++|+|+| + 
T Consensus       247 ~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          247 M-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             E-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             e-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence            5 7999999999999 99999999999999999999877655542                    122335666666 5 


Q ss_pred             EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          163 AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +++.|+.|++||+..+ .....+..+.  +...+.+++|+|++.+|++|+ ||.+.||..
T Consensus       325 s~s~d~~i~iwd~~~~-~~~~~l~~~~--~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          325 LLNDKRTIDIYDANSG-GLVHQLRDPN--AAGIISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             CTTCCCCEEEEETTTC-CEEEEECBTT--BCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             ccCCCCeEEEEecCCC-ceeeeecCCC--CCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence            6668999999997655 4555555432  233677889999999999997 887777764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=5.2e-22  Score=186.36  Aligned_cols=149  Identities=16%  Similarity=0.203  Sum_probs=123.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEEeecCCCCeEEEEEecCC-CEEEE--ecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA----LLIKMLYHQGPVSALAFHPNG-HLMAT--TGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~p~g-~~l~s--~~~d~~i~vwd~~~~  141 (359)
                      .+.++.|+|++.++++++.||.|++|+..++.    .+..+..|.+.|.+++|+|++ .++++  |+.|++|++||+.++
T Consensus       232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            67889999999999999999999999998764    355677899999999999965 45554  457999999999999


Q ss_pred             eeeEee--cCCceeEEEcCCC--cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          142 EVLQTL--TGHAKTLDFSQKG--LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       142 ~~~~~~--~~~v~~~~~s~~g--l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      .++..+  ...+.++.|+|++  +++++  .|+.|+|||+.+. ..+..+.+|..    .|++++|+|+|.+|++|+.||
T Consensus       312 ~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~----~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          312 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTS----RVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSCEEEEETTT
T ss_pred             ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCC
Confidence            998888  4568999999998  55554  5899999997554 56667777754    899999999999999999999


Q ss_pred             eEEEEEc
Q 040274          216 WSGILVP  222 (359)
Q Consensus       216 ~~~i~~~  222 (359)
                      .++||..
T Consensus       387 tvriWdv  393 (420)
T 4gga_A          387 TLRLWRC  393 (420)
T ss_dssp             EEEEECC
T ss_pred             eEEEEEC
Confidence            7776643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-22  Score=206.59  Aligned_cols=170  Identities=9%  Similarity=0.029  Sum_probs=143.1

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      ++++|+|+|++||+|+.                      .|.+++|+| +.+|++++.|++|++||+.+++++..+. |.
T Consensus        21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~   98 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP   98 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC
Confidence            89999999999999985                      689999999 8899999999999999999999888885 77


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-----------Eee---cCCceeEEEcCCC---cEEEEcCCcEEE
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-----------QTL---TGHAKTLDFSQKG---LLAVGTGSFAQI  172 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-----------~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v  172 (359)
                      +.|++++|+|++.+|++|+.||+|++||+.++.+.           ..+   .+.|++++|+|++   +++++.|+.| +
T Consensus        99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-l  177 (902)
T 2oaj_A           99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-T  177 (902)
T ss_dssp             SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred             CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-E
Confidence            89999999999999999999999999999988753           111   3568999999974   7778889999 9


Q ss_pred             EcCCCCCccccccccc---------------cCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          173 LGDFSGSHNYSRYMGN---------------SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ||+... .....+..|               .. +...|++++|+|+|.+|++|+.||.+.+|....+.
T Consensus       178 Wd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          178 YSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEK-RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EETTTT-EEEEEECCCBCTTCCCSTTCCCTTSC-BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EECCCC-ceEEEEecccCCcCCCcccccccccc-cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            997654 333333333               01 23479999999999999999999999999876554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=3.8e-22  Score=178.75  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=125.8

Q ss_pred             eEEEECCCCCEEEEecc---ceeEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEeecCC---CCeEEEEEecCCC
Q 040274           52 ILWILPSSGRYMAVAGR---RTDLMRVNP---FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ---GPVSALAFHPNGH  122 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---~v~~l~~sp---~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~---~~v~~l~~~p~g~  122 (359)
                      ..++++|+|+.+++...   .++.++|+|   ++.+|++|+.|++|+|||+.+++++.++.+|.   ..+.+++|+|+|.
T Consensus       160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~  239 (356)
T 2w18_A          160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL  239 (356)
T ss_dssp             EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred             EEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence            57888999988775221   688888888   67999999999999999999999999998654   3677889999998


Q ss_pred             EE------------EEecCCCeEEEEEcCCCeeeEee-----cCCc-eeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          123 LM------------ATTGKECKIKIWDLRKYEVLQTL-----TGHA-KTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       123 ~l------------~s~~~d~~i~vwd~~~~~~~~~~-----~~~v-~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      ++            ++|+.|++|++||..++..+..+     .++. ..+..+.++  +++++.|++|+|||+.++ ...
T Consensus       240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l  318 (356)
T 2w18_A          240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG-QCT  318 (356)
T ss_dssp             EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC-SEE
T ss_pred             EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC-cEE
Confidence            76            56788999999999999887654     2331 122222235  667778999999997655 566


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..+.+|..   ..+.+++|+|||.+|++|+.|+.++||.
T Consensus       319 ~tL~gH~~---~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          319 ALLPPVSD---QHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEecCCCC---CeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            66766632   2345689999999999999999888775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.90  E-value=4.4e-22  Score=185.58  Aligned_cols=148  Identities=18%  Similarity=0.276  Sum_probs=128.3

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------cceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcC
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTS-------ALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~  139 (359)
                      .|++++|+| ++.+|++|+.||.|++||+.++       .++..+.+|...|++++|+|++ .+|++++.|+.|++||+.
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            799999999 8999999999999999999987       6788899999999999999998 699999999999999999


Q ss_pred             CCeeeEee--c---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccc-ccccCCCCcceeEEEEccCCCEEEEE
Q 040274          140 KYEVLQTL--T---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRY-MGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       140 ~~~~~~~~--~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      +++.+..+  .   +.|.+++|+|+|  +++++.|+.|++||+... .....+ ..|.   +..+.++.|+|++.+|++|
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHE---GTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECSSC---SSSCCEEEECSTTEEEEEE
T ss_pred             CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCC---CCcceEEEEcCCCcEEEEe
Confidence            99988777  3   458999999999  788889999999997654 444444 4553   2348999999999999999


Q ss_pred             ---eCCCeEEEE
Q 040274          212 ---HSMGWSGIL  220 (359)
Q Consensus       212 ---~~dg~~~i~  220 (359)
                         +.++.+.+|
T Consensus       239 ~~~~~d~~i~iw  250 (402)
T 2aq5_A          239 FSRMSERQVALW  250 (402)
T ss_dssp             ECTTCCEEEEEE
T ss_pred             ccCCCCceEEEE
Confidence               788887774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=9.1e-23  Score=184.33  Aligned_cols=168  Identities=13%  Similarity=0.092  Sum_probs=136.8

Q ss_pred             eEEEECC--CCCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcc-
Q 040274           52 ILWILPS--SGRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSAL-  101 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~~-  101 (359)
                      ++++|+|  +|++|++|+.                         .|.+++|+|+  +.+|++|+.||+|++||+.++.. 
T Consensus        61 ~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           61 WQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             EEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             EEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence            8899976  4899999875                         5889999997  78999999999999999987632 


Q ss_pred             --eEEeecCCCCeEEEEEecC-----------------CCEEEEecCCCeEEEEEcCCC---eeeEeec---CCceeEEE
Q 040274          102 --LIKMLYHQGPVSALAFHPN-----------------GHLMATTGKECKIKIWDLRKY---EVLQTLT---GHAKTLDF  156 (359)
Q Consensus       102 --~~~~~~h~~~v~~l~~~p~-----------------g~~l~s~~~d~~i~vwd~~~~---~~~~~~~---~~v~~~~~  156 (359)
                        ...+.+|...|.+++|+|+                 +.+|++|+.|++|++||++..   .++..+.   +.|.+++|
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~  220 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW  220 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred             ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence              3455689999999999997                 468999999999999999754   4555664   45899999


Q ss_pred             cCCC------cEEEEcCCcEEEEcCCCCC---ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          157 SQKG------LLAVGTGSFAQILGDFSGS---HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       157 s~~g------l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +|++      +++++.|++|+|||+....   .....+..|.    ..|.+++|+|++.+|++|+.||.+++|...
T Consensus       221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~----~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN----DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS----SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC----CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9974      7889999999999975421   1122333443    389999999999999999999999999764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.4e-22  Score=184.37  Aligned_cols=168  Identities=9%  Similarity=0.137  Sum_probs=141.1

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-------
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL-------  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~-------  102 (359)
                      .+++|+|+|++|++++.                      .|.+++|+|++.+|++++.||.|++||+.++..+       
T Consensus       112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  191 (425)
T 1r5m_A          112 TCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE  191 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence            78889999999888875                      7888999998888999988999988888765433       


Q ss_pred             -------------------------------------------------EEeecCCCCeEEEEEecCCCEEEEecCCCeE
Q 040274          103 -------------------------------------------------IKMLYHQGPVSALAFHPNGHLMATTGKECKI  133 (359)
Q Consensus       103 -------------------------------------------------~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i  133 (359)
                                                                       ..+..|...|++++|+|++.+|++++.|+.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence                                                             3444678899999999999999999999999


Q ss_pred             EEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE
Q 040274          134 KIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       134 ~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      ++||+++++.+..+   ...+.+++|+|++ +++++.|+.|++||+... .....+..|..    .|.+++|+|++.+|+
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN-TLLALSIVDGV----PIFAGRISQDGQKYA  346 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT-EEEEEEECTTC----CEEEEEECTTSSEEE
T ss_pred             EEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC-cEeEecccCCc----cEEEEEEcCCCCEEE
Confidence            99999998887777   4568999999999 888999999999997554 45555555533    899999999999999


Q ss_pred             EEeCCCeEEEEEcCC
Q 040274          210 IGHSMGWSGILVPRS  224 (359)
Q Consensus       210 ~g~~dg~~~i~~~gs  224 (359)
                      +|+.||.+.+|....
T Consensus       347 ~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEETTSCEEEEECHH
T ss_pred             EEECCCeEEEEECCC
Confidence            999999888886543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=1.4e-21  Score=176.92  Aligned_cols=165  Identities=14%  Similarity=0.197  Sum_probs=142.6

Q ss_pred             eEEEECCC-CCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSS-GRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spd-g~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      ++|+|+|+ +++|++|+.                            .|.+++|+|++.+|++|+.|+.|++|+.......
T Consensus        42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~  121 (340)
T 4aow_A           42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT  121 (340)
T ss_dssp             EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence            99999997 689999886                            6899999999999999999999999999998888


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC----cEEEEcCCcEEEEc
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG----LLAVGTGSFAQILG  174 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g----l~~~~~d~~i~v~d  174 (359)
                      .....+...+..+.+++++.+|++++.|+.+++||+.........    ...+.+++|++++    +++++.|+.|++||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d  201 (340)
T 4aow_A          122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN  201 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred             eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence            888889999999999999999999999999999999876543332    3457899999876    56788899999999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +... .....+..|..    .|++++|+|++.+|++|+.||.+.+|.
T Consensus       202 ~~~~-~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          202 LANC-KLKTNHIGHTG----YLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             TTTT-EEEEEECCCSS----CEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             CCCC-ceeeEecCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            6554 55555666644    899999999999999999999988853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=7.3e-22  Score=183.05  Aligned_cols=152  Identities=15%  Similarity=0.148  Sum_probs=129.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec---C---CCCeEEEEEecCCCEEEEecCC---CeEEEEEcCC
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY---H---QGPVSALAFHPNGHLMATTGKE---CKIKIWDLRK  140 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~---h---~~~v~~l~~~p~g~~l~s~~~d---~~i~vwd~~~  140 (359)
                      |.+++|+|++ +|++|+.||.|++||+.++.++..+..   |   ...|.+++|+|++.+|++++.|   +.|++||+++
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            6789999999 999999999999999999999999998   9   9999999999999999999999   9999999999


Q ss_pred             CeeeEeecC----------------CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccc------cc--------
Q 040274          141 YEVLQTLTG----------------HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYM------GN--------  188 (359)
Q Consensus       141 ~~~~~~~~~----------------~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~------~~--------  188 (359)
                      ++++..+.+                .|.+++|+|++  +++++.|+.|++||+... .....+.      .|        
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~  346 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVD  346 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBC
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccc
Confidence            988777743                47999999999  778888999999997654 4444444      33        


Q ss_pred             ----cCCCCcceeEEEEccCC----------CEEEEEeCCCeEEEEEcCC
Q 040274          189 ----SMVKGYQIGKVSFRPYE----------DVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       189 ----~~~~~~~v~~~~~sp~~----------~~l~~g~~dg~~~i~~~gs  224 (359)
                          .. |...|++++|+|++          .+|++|+.||.+.+|...+
T Consensus       347 ~~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          347 EHGDSL-AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TTSCBC-SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccc-cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence                00 14589999999998          7999999999888887544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=1e-21  Score=182.08  Aligned_cols=172  Identities=20%  Similarity=0.282  Sum_probs=141.3

Q ss_pred             eEEEECC-CCCEEEEecc----------------------ceeEEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPS-SGRYMAVAGR----------------------RTDLMRVNPFN---GVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~----------------------~v~~l~~sp~~---~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|+| ++.+|++++.                      .+.++.|+|.+   .++++|+.||.|++||+.++..+..+
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence            8999999 7888988875                      67899998844   49999999999999999999999999


Q ss_pred             ecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCe-eeEee------------------cCCceeEEEcCCC--cEE
Q 040274          106 LYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYE-VLQTL------------------TGHAKTLDFSQKG--LLA  163 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~-~~~~~------------------~~~v~~~~~s~~g--l~~  163 (359)
                      .+|.+.|++++|+|++. +|++++.||.|++||++++. ++..+                  .+.|.+++|+|+|  +++
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            99999999999999998 58999999999999998764 23322                  3458999999999  788


Q ss_pred             EEcCCcEEEEcCCCCCcc----------------------------------------------ccccccccCCCCccee
Q 040274          164 VGTGSFAQILGDFSGSHN----------------------------------------------YSRYMGNSMVKGYQIG  197 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~----------------------------------------------~~~~~~~~~~~~~~v~  197 (359)
                      ++.|+.|++||+......                                              ...+..    |...|+
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~v~  338 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG----HYKTVD  338 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC----CSSCEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc----CCCeEE
Confidence            889999999997654211                                              111122    445899


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          198 KVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       198 ~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      +++|+|++.+|++|+.||.+.+|.......
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            999999999999999999999988776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.89  E-value=4.5e-22  Score=180.59  Aligned_cols=169  Identities=11%  Similarity=-0.002  Sum_probs=143.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCC-EEEEEeCCCeEEEEeC-CCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNG-VVSLGHSGGTVTMWKP-TTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~-~l~tg~~dg~v~lwd~-~~~~~~~  103 (359)
                      ++++|+|+|.+|++++.                          .|++++|+|++. +|++|+.||.|++||+ .++. ..
T Consensus        15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~   93 (342)
T 1yfq_A           15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQ   93 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-EE
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-eE
Confidence            89999999999999876                          799999999999 9999999999999999 7765 46


Q ss_pred             Eeec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC---------CeeeEee--cCCceeEEEcCCCcEEEEcCCcE
Q 040274          104 KMLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRK---------YEVLQTL--TGHAKTLDFSQKGLLAVGTGSFA  170 (359)
Q Consensus       104 ~~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~---------~~~~~~~--~~~v~~~~~s~~gl~~~~~d~~i  170 (359)
                      .+.+  |...|++++|+| +.+|++++.|+.|++||+++         ++++..+  .+.+.+++|+|+++++++.++.|
T Consensus        94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i  172 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV  172 (342)
T ss_dssp             ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred             eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeE
Confidence            7778  999999999999 99999999999999999987         6666555  56789999999998899999999


Q ss_pred             EEEcCCC-CCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 040274          171 QILGDFS-GSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       171 ~v~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .+||+.. ...........   +...|.+++|+| ++.+|++|+.+|.+.+|.....
T Consensus       173 ~i~d~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          173 QWFRLPLCEDDNGTIEESG---LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEESSCCTTCCCEEEECS---CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EEEECCccccccceeeecC---CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            9999766 32222222211   334799999999 9999999999999999876554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.1e-21  Score=179.13  Aligned_cols=155  Identities=13%  Similarity=0.209  Sum_probs=130.9

Q ss_pred             ceeEEEEcCC----CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPF----NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~----~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      .|++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+++++.
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  150 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL  150 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence            3899999998    66999999999999999999999999999999999999999 999999999999999999999988


Q ss_pred             eEee------cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccc-------------------------ccC
Q 040274          144 LQTL------TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMG-------------------------NSM  190 (359)
Q Consensus       144 ~~~~------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------------------~~~  190 (359)
                      +..+      ...|.+++|+|++  +++++.|+.|++||+... .....+..                         ...
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T 3k26_A          151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI  229 (366)
T ss_dssp             EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred             EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccC
Confidence            7776      3458999999999  888889999999997643 22221111                         000


Q ss_pred             CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          191 VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       191 ~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                       +...|.+++|+  +++|++++.||.+.+|.......
T Consensus       230 -~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          230 -HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             -CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred             -CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence             33479999998  78999999999999998876654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.89  E-value=7e-22  Score=180.07  Aligned_cols=164  Identities=12%  Similarity=0.125  Sum_probs=134.6

Q ss_pred             eEEEECCCCCEEEEec-----c-----------------------ceeEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAG-----R-----------------------RTDLMRVNPF---NGVVSLGHSGGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~-----~-----------------------~v~~l~~sp~---~~~l~tg~~dg~v~lwd~~~~~  100 (359)
                      ++++|+|+|..+++++     .                       .|++++|+|+   +.+|++|+.||.|++||+.++.
T Consensus        22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  101 (357)
T 3i2n_A           22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS
T ss_pred             EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC
Confidence            8999999997665444     3                       7999999998   6999999999999999999987


Q ss_pred             -ceEEeecCCCCeEEEEE------ecCCCEEEEecCCCeEEEEEcCCCe-eeEee---cC----CceeEE----EcCCC-
Q 040274          101 -LLIKMLYHQGPVSALAF------HPNGHLMATTGKECKIKIWDLRKYE-VLQTL---TG----HAKTLD----FSQKG-  160 (359)
Q Consensus       101 -~~~~~~~h~~~v~~l~~------~p~g~~l~s~~~d~~i~vwd~~~~~-~~~~~---~~----~v~~~~----~s~~g-  160 (359)
                       ++..+.+|...|+++.|      +|++.+|++++.|+.|++||+.++. ++..+   .+    .+.+++    |+|++ 
T Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (357)
T 3i2n_A          102 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER  181 (357)
T ss_dssp             SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC
T ss_pred             ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC
Confidence             88899999999999955      6799999999999999999999876 66666   22    577777    77888 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc---CCCEEEEEeCCCeEEEEE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP---YEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~g~~dg~~~i~~  221 (359)
                       +++++.++.|++||+.... . .....|.    ..|.+++|+|   ++.+|++|+.||.+.+|.
T Consensus       182 ~l~~~~~d~~i~i~d~~~~~-~-~~~~~~~----~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d  240 (357)
T 3i2n_A          182 VVCAGYDNGDIKLFDLRNMA-L-RWETNIK----NGVCSLEFDRKDISMNKLVATSLEGKFHVFD  240 (357)
T ss_dssp             EEEEEETTSEEEEEETTTTE-E-EEEEECS----SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred             EEEEEccCCeEEEEECccCc-e-eeecCCC----CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence             7778888999999976552 2 2223333    3799999999   999999999999877753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=184.72  Aligned_cols=180  Identities=10%  Similarity=0.105  Sum_probs=140.9

Q ss_pred             eEEEECCCCCEEEEecc--------------------------------c--------------eeEEEEcCCC--CEEE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------------R--------------TDLMRVNPFN--GVVS   83 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------------~--------------v~~l~~sp~~--~~l~   83 (359)
                      .+++|+|+|++|++|+.                                .              |++++|+|++  ..|+
T Consensus        32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~  111 (447)
T 3dw8_B           32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL  111 (447)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence            89999999999999875                                1              8889999988  7999


Q ss_pred             EEeCCCeEEEEeCCCCcce---------------------------------------EE-eecCCCCeEEEEEecCCCE
Q 040274           84 LGHSGGTVTMWKPTTSALL---------------------------------------IK-MLYHQGPVSALAFHPNGHL  123 (359)
Q Consensus        84 tg~~dg~v~lwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l~~~p~g~~  123 (359)
                      +|+.||+|++||+.++...                                       .. ..+|...|++++|+|++.+
T Consensus       112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  191 (447)
T 3dw8_B          112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET  191 (447)
T ss_dssp             EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred             EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence            9999999999998764331                                       12 3579999999999999999


Q ss_pred             EEEecCCCeEEEEEcCC-CeeeEe-------e---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcc---ccccc
Q 040274          124 MATTGKECKIKIWDLRK-YEVLQT-------L---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHN---YSRYM  186 (359)
Q Consensus       124 l~s~~~d~~i~vwd~~~-~~~~~~-------~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~---~~~~~  186 (359)
                      |++| .|+.|++||+.+ +..+..       +   ...|++++|+|+|   +++++.|+.|++||+......   ...+.
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  270 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE  270 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence            9998 799999999994 444442       2   3458999999997   788889999999997665321   33344


Q ss_pred             cccCC--------CCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          187 GNSMV--------KGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       187 ~~~~~--------~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      .|...        +...|.+++|+|+|.+|++++. |.+.+|........+..+.
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            33200        0126999999999999999999 9999998876344444444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=185.71  Aligned_cols=151  Identities=6%  Similarity=0.010  Sum_probs=128.8

Q ss_pred             eeEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee
Q 040274           70 TDLMRVNPFNGVV-SLGHSGGTVTMWKPT--TSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        70 v~~l~~sp~~~~l-~tg~~dg~v~lwd~~--~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      |++++|+|++.+| ++|+.||.|++||+.  ++..+..+.  .|...|++++|+|++.+|++++.||.|++||+.++...
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence            8899999999996 899999999999999  888888876  66789999999999999999999999999999887644


Q ss_pred             E----ee---cCCceeEEEcCC---C--cEEEEcCCcEEEEcCCCCCccccc-cccccCCCCcceeEEEEccCCCEEEEE
Q 040274          145 Q----TL---TGHAKTLDFSQK---G--LLAVGTGSFAQILGDFSGSHNYSR-YMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       145 ~----~~---~~~v~~~~~s~~---g--l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      .    .+   .+.|++++|+|+   +  +++++.|+.|++||+... ..... +.+|.    ..|.+++|+ ++.+|++|
T Consensus       185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~h~----~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKWLFGHK----HFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEECCCCS----SCEEEEEEC-STTEEEEE
T ss_pred             cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeeeecCCC----CceEEEEEC-CCCEEEEE
Confidence            3    33   456899999999   7  788889999999997655 33333 44554    389999999 99999999


Q ss_pred             eCCCeEEEEEcCCCC
Q 040274          212 HSMGWSGILVPRSSE  226 (359)
Q Consensus       212 ~~dg~~~i~~~gs~~  226 (359)
                      +.|+.+.+|...++.
T Consensus       259 ~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGK  273 (450)
T ss_dssp             ESSSEEEEEETTTCC
T ss_pred             eCCCeEEEEECCCCc
Confidence            999999999876654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.8e-21  Score=181.31  Aligned_cols=164  Identities=13%  Similarity=0.230  Sum_probs=143.4

Q ss_pred             eEEEECCCCC-EEEEecc-------------------------------------------ceeEEEEcCCCCEEEEEeC
Q 040274           52 ILWILPSSGR-YMAVAGR-------------------------------------------RTDLMRVNPFNGVVSLGHS   87 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~-------------------------------------------~v~~l~~sp~~~~l~tg~~   87 (359)
                      .+++|+|+|+ +|++|+.                                           .|++++|+|++.+|++|+.
T Consensus        49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  128 (425)
T 1r5m_A           49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE  128 (425)
T ss_dssp             SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence            8999999999 9988764                                           3778999999999999999


Q ss_pred             CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CC--------------
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GH--------------  150 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~--------------  150 (359)
                      ||.|++|| .++..+..+.+|...|++++|+|++.+|++++.|+.|++||+.+++.+..+.   ..              
T Consensus       129 dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (425)
T 1r5m_A          129 NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS  207 (425)
T ss_dssp             TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred             CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence            99999999 6678888899999999999999999999999999999999999998887772   22              


Q ss_pred             -ceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          151 -AKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       151 -v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       +.+++|+|++ +++++.++.|.+||+... .....+..|..    .|.+++|+|++.+|++++.||.+.+|.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TPTGKLIGHHG----PISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             CBSCCEEEETTEEEEECGGGCEEEEETTCS-SCSEEECCCSS----CEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             eeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-ceeeeeccCCC----ceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence             8899999999 889999999999997654 45555555543    899999999999999999999888753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=1.5e-21  Score=183.94  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=141.2

Q ss_pred             eEEEECCC-CCEEEEecc---------------------------------ceeEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 040274           52 ILWILPSS-GRYMAVAGR---------------------------------RTDLMRVNPFNG-VVSLGHSGGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spd-g~~l~~~~~---------------------------------~v~~l~~sp~~~-~l~tg~~dg~v~lwd~   96 (359)
                      ++++|+|+ +.+|++++.                                 .|.+++|+|++. +|++|+.||.|++||+
T Consensus       132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  211 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI  211 (430)
T ss_dssp             SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred             EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence            99999997 678888764                                 578999999888 9999999999999999


Q ss_pred             CCCcc-------eEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCC---eeeEee---cCCceeEEEcCCC--
Q 040274           97 TTSAL-------LIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKY---EVLQTL---TGHAKTLDFSQKG--  160 (359)
Q Consensus        97 ~~~~~-------~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~---~~~~~~---~~~v~~~~~s~~g--  160 (359)
                      .++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++   .++..+   ...|++++|+|++  
T Consensus       212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  291 (430)
T 2xyi_A          212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF  291 (430)
T ss_dssp             TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence            87422       456678999999999999 7889999999999999999986   455555   4568999999988  


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEeCCCeEEEEEcCC
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~~~i~~~gs  224 (359)
                       +++++.|+.|.+||+.........+..|..    .|++++|+|++. +|++++.||.+.||....
T Consensus       292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          292 ILATGSADKTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEEETTSEEEEEETTCTTSCSEEEECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEEEeCCCeEEEEeCCCCCCCeEEeecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence             567888999999998765555666666644    899999999995 688999999888887644

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=5e-21  Score=177.47  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=144.3

Q ss_pred             eEEEECC-CCCEEEEecc------------------------------------ceeEEEEcC-CCCEEEEEeCCCeEEE
Q 040274           52 ILWILPS-SGRYMAVAGR------------------------------------RTDLMRVNP-FNGVVSLGHSGGTVTM   93 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~------------------------------------~v~~l~~sp-~~~~l~tg~~dg~v~l   93 (359)
                      .+++|+| +|++|++|+.                                    .|.+++|+| ++.+|++|+.||.|++
T Consensus        47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  126 (408)
T 4a11_B           47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV  126 (408)
T ss_dssp             EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence            9999999 9999999875                                    589999999 7789999999999999


Q ss_pred             EeCCCCcceEEeecCCCCeEEEEEec---CCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC---cEEE
Q 040274           94 WKPTTSALLIKMLYHQGPVSALAFHP---NGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG---LLAV  164 (359)
Q Consensus        94 wd~~~~~~~~~~~~h~~~v~~l~~~p---~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g---l~~~  164 (359)
                      ||+.++..+..+. +...+.++.|+|   ++.++++++.|+.|++||++++..+..+   .+.|.+++|+|++   ++++
T Consensus       127 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~  205 (408)
T 4a11_B          127 WDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATA  205 (408)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred             eeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEE
Confidence            9999998877775 788899999998   4559999999999999999999887777   3568999999998   5578


Q ss_pred             EcCCcEEEEcCCCCCcccccccccc-----------CCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          165 GTGSFAQILGDFSGSHNYSRYMGNS-----------MVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       165 ~~d~~i~v~d~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      +.|+.|++||+.........+..+.           ..+...|.+++|+|++.+|++++.||.+.+|....+
T Consensus       206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            8899999999866543332221100           014458999999999999999999999999986553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=1.4e-21  Score=206.93  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=142.0

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ++++|+|||++|++|+.                       .|++++|+|++.+|++|+.||.|++||+.+++++..+.+|
T Consensus       619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            89999999999999876                       7999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcc
Q 040274          109 QGPVSALAFHP--NGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       109 ~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~  181 (359)
                      ...|++++|+|  ++.++++++.|+.|++||+.++.++..+   .+.|++++|+|+|  +++++.||.|++||+......
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~  778 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER  778 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEE
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccc
Confidence            99999999999  5668999999999999999999988887   3568999999999  888889999999997543110


Q ss_pred             ccccc----------------------------------------------------cccCCCCcceeEEEEccCCCEEE
Q 040274          182 YSRYM----------------------------------------------------GNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       182 ~~~~~----------------------------------------------------~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                       ..+.                                                    .... +...|.+++|+|++.+++
T Consensus       779 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~  856 (1249)
T 3sfz_A          779 -KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG-HHSTIQYCDFSPYDHLAV  856 (1249)
T ss_dssp             -EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS-SSSCCCEEEECSSTTEEE
T ss_pred             -ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC-CCCceEEEEEcCCCCEEE
Confidence             0000                                                    0001 344788899999999999


Q ss_pred             EEeCCCeEEEE
Q 040274          210 IGHSMGWSGIL  220 (359)
Q Consensus       210 ~g~~dg~~~i~  220 (359)
                      +|+.+|.+.+|
T Consensus       857 ~~~~dg~v~vw  867 (1249)
T 3sfz_A          857 IALSQYCVELW  867 (1249)
T ss_dssp             EECSSSCEEEE
T ss_pred             EEeCCCeEEEE
Confidence            99998887764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.4e-22  Score=180.25  Aligned_cols=167  Identities=13%  Similarity=0.136  Sum_probs=135.5

Q ss_pred             eEEEECC--CCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-EE
Q 040274           52 ILWILPS--SGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL-IK  104 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~-~~  104 (359)
                      .+++|+|  +|++|++++.                        .|++++|+|++.+|++|+.||.|++||+.++..+ ..
T Consensus       129 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~  208 (343)
T 3lrv_A          129 IYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR  208 (343)
T ss_dssp             EEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE
T ss_pred             EEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE
Confidence            8899999  9999998886                        6899999999999999999999999999999887 77


Q ss_pred             eec-CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec------CCce--eEEEcCCC--cEEEEc-CCcEEE
Q 040274          105 MLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT------GHAK--TLDFSQKG--LLAVGT-GSFAQI  172 (359)
Q Consensus       105 ~~~-h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~------~~v~--~~~~s~~g--l~~~~~-d~~i~v  172 (359)
                      +.+ |.++|++++|+|+|.+|++++ |+.|++||++++..+..+.      .++.  +++|+|+|  +++++. ++.|+|
T Consensus       209 ~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          209 FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI  287 (343)
T ss_dssp             CCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence            887 999999999999999999999 5599999999987665542      2233  59999999  556666 899999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEcc---CCCEEEEEeCCCeEEEEEcCCCCCc
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP---YEDVLGIGHSMGWSGILVPRSSEPN  228 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~g~~dg~~~i~~~gs~~~~  228 (359)
                      |++.........   .      ++..+.|+|   +...|++++.||.+.+++....+.+
T Consensus       288 ~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~  337 (343)
T 3lrv_A          288 YKFDKKTKNWTK---D------EESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFN  337 (343)
T ss_dssp             EEECTTTCSEEE---E------EEEECCC----CCCCEEEEEEETTEEEEEEECSSEEE
T ss_pred             EEEcccccceEe---c------CceeEecCccccccceeEEEecCCceEEEEecCCeEe
Confidence            996544322221   1      678889999   8899999999999998886655433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.6e-21  Score=177.95  Aligned_cols=155  Identities=10%  Similarity=0.035  Sum_probs=121.5

Q ss_pred             ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee-
Q 040274           69 RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL-  144 (359)
Q Consensus        69 ~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~-  144 (359)
                      .|.+++|+|  ++.+|++|+.||+|++||+.++.++..+. .|...|++++|+|+|.+|++|+.||.|++||+++++.+ 
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~  206 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS  206 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence            599999999  99999999999999999999998876664 45568999999999999999999999999999998876 


Q ss_pred             Eeec----CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcce--eEEEEccCCCEEEEEeC-CCe
Q 040274          145 QTLT----GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQI--GKVSFRPYEDVLGIGHS-MGW  216 (359)
Q Consensus       145 ~~~~----~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~g~~-dg~  216 (359)
                      ..+.    +.|++++|+|+| +++++.++.|++||+... .....+..+.. +...+  .+++|+|+|.+|++++. ++.
T Consensus       207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~  284 (343)
T 3lrv_A          207 SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD-VGTLAYPTYTI-PEFKTGTVTYDIDDSGKNMIAYSNESNS  284 (343)
T ss_dssp             EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS-TTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTE
T ss_pred             cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC-Ccceeeccccc-ccccccceEEEECCCCCEEEEecCCCCc
Confidence            5553    458999999999 444444779999997665 33333322111 11133  46999999999999998 998


Q ss_pred             EEEEEcCCC
Q 040274          217 SGILVPRSS  225 (359)
Q Consensus       217 ~~i~~~gs~  225 (359)
                      +.+|.....
T Consensus       285 i~v~~~~~~  293 (343)
T 3lrv_A          285 LTIYKFDKK  293 (343)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEccc
Confidence            999876443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.88  E-value=2.2e-21  Score=175.25  Aligned_cols=110  Identities=16%  Similarity=0.290  Sum_probs=97.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC----cceEEeecCCCCeEEEEEec--CCCEEEEecCCCeEEEEEcCCC-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS----ALLIKMLYHQGPVSALAFHP--NGHLMATTGKECKIKIWDLRKY-  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~p--~g~~l~s~~~d~~i~vwd~~~~-  141 (359)
                      .|++++|+|++.+|++|+.||.|++||+.++    ..+..+.+|...|++++|+|  ++.+|++++.|+.|++||+.++ 
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            7999999999999999999999999999876    35667789999999999999  6999999999999999999886 


Q ss_pred             --------eeeEee---cCCceeEEEcCC--C--cEEEEcCCcEEEEcCCCC
Q 040274          142 --------EVLQTL---TGHAKTLDFSQK--G--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       142 --------~~~~~~---~~~v~~~~~s~~--g--l~~~~~d~~i~v~d~~~~  178 (359)
                              .++..+   .+.+.+++|+|+  +  +++++.|+.|++||+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence                    445555   456899999998  7  788889999999997544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=2.6e-21  Score=180.43  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=138.3

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++|  ++++|++|+.                        .|.+++|+|++.+|++|+.||.|++||+.++.++..+..
T Consensus       180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  257 (401)
T 4aez_A          180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN  257 (401)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred             EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence            66677  5678888775                        799999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-CEEEEec--CCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEE--cCCcEEEEcCCCC
Q 040274          108 HQGPVSALAFHPNG-HLMATTG--KECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVG--TGSFAQILGDFSG  178 (359)
Q Consensus       108 h~~~v~~l~~~p~g-~~l~s~~--~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~--~d~~i~v~d~~~~  178 (359)
                      |...|.+++|+|++ .++++++  .|+.|++||+.+++++..+  ...+.+++|+|+|  +++++  .++.|.+||+...
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            99999999999966 5566655  7999999999999988887  4569999999999  55533  6899999997553


Q ss_pred             Ccc-ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          179 SHN-YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       179 ~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ... ...+..|.    ..|.+++|+|+|.+|++|+.||.+.+|....++
T Consensus       338 ~~~~~~~~~~h~----~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          338 GLTKQVDIPAHD----TRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEEEEEEECCS----SCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             cceeEEEecCCC----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            211 11233443    489999999999999999999988888765544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=183.39  Aligned_cols=155  Identities=11%  Similarity=0.168  Sum_probs=124.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceE-------EeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCC
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTT-SALLI-------KMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~-~~~~~-------~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~  140 (359)
                      |.+++|+|++.+|++| .||.|++||+.+ +..+.       .+.+|...|++++|+|++ .+|++++.||.|++||+++
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence            5689999999999999 799999999984 34443       255899999999999998 9999999999999999998


Q ss_pred             Cee----eEeecC---------------CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCC------
Q 040274          141 YEV----LQTLTG---------------HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKG------  193 (359)
Q Consensus       141 ~~~----~~~~~~---------------~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~------  193 (359)
                      +..    +..+.+               .|.+++|+|+|  +++++. +.|++||+.........+..|.....      
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence            876    566632               78999999999  555555 99999998764566666666632000      


Q ss_pred             --c---ceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          194 --Y---QIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       194 --~---~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                        .   .+.+++|+|++.+|++|+.||.+.+|...++.
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence              0   13349999999999999999999999876654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.7e-21  Score=181.48  Aligned_cols=170  Identities=20%  Similarity=0.252  Sum_probs=145.3

Q ss_pred             eEEEECCC-CCEEEEecc--------------------------------ceeEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040274           52 ILWILPSS-GRYMAVAGR--------------------------------RTDLMRVNPF-NGVVSLGHSGGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spd-g~~l~~~~~--------------------------------~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~   97 (359)
                      .+++|+|+ +++|++++.                                .|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus       117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  196 (416)
T 2pm9_A          117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK  196 (416)
T ss_dssp             CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred             EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence            89999998 899999875                                5789999998 7899999999999999999


Q ss_pred             CCcceEEeecC------CCCeEEEEEecCC-CEEEEecCCC---eEEEEEcCCC-eeeEeec----CCceeEEEcC-CC-
Q 040274           98 TSALLIKMLYH------QGPVSALAFHPNG-HLMATTGKEC---KIKIWDLRKY-EVLQTLT----GHAKTLDFSQ-KG-  160 (359)
Q Consensus        98 ~~~~~~~~~~h------~~~v~~l~~~p~g-~~l~s~~~d~---~i~vwd~~~~-~~~~~~~----~~v~~~~~s~-~g-  160 (359)
                      ++..+..+..|      ...|++++|+|++ .+|++++.|+   .|++||++++ .++..+.    ..|++++|+| ++ 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  276 (416)
T 2pm9_A          197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH  276 (416)
T ss_dssp             TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred             CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence            99988888876      7899999999997 6899999998   9999999986 5555554    4589999999 77 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC-CEEEEEeCCCeEEEEEcCCCC
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~g~~dg~~~i~~~gs~~  226 (359)
                       +++++.|+.|++||+... .....+..|..    .|.+++|+|++ .+|++++.||.+.+|......
T Consensus       277 ~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          277 LLLSSGRDNTVLLWNPESA-EQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CEEEEESSSEEEEECSSSC-CEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             eEEEEeCCCCEEEeeCCCC-ccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence             788888999999997654 55556666644    79999999999 899999999998888765543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.1e-21  Score=182.76  Aligned_cols=169  Identities=15%  Similarity=0.099  Sum_probs=141.0

Q ss_pred             eEEEECCCCCEE-EEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYM-AVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l-~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      .+++|+|+|++| ++|+.                           .|++++|+|++.+|++|+.||.|++|++.++....
T Consensus       106 ~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~  185 (450)
T 2vdu_B          106 RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK  185 (450)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc
Confidence            899999999997 77754                           57899999999999999999999999998876544


Q ss_pred             ----EeecCCCCeEEEEEecC---CCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC--cEEEEcCCcE
Q 040274          104 ----KMLYHQGPVSALAFHPN---GHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG--LLAVGTGSFA  170 (359)
Q Consensus       104 ----~~~~h~~~v~~l~~~p~---g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g--l~~~~~d~~i  170 (359)
                          .+.+|.+.|++++|+|+   +.+|++++.|+.|++||+.++.++..+    .+.|++++|+ +|  +++++.|+.|
T Consensus       186 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v  264 (450)
T 2vdu_B          186 FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKI  264 (450)
T ss_dssp             CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEE
T ss_pred             ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeE
Confidence                77899999999999999   999999999999999999998877764    3568999999 88  8888899999


Q ss_pred             EEEcCCCCCcccccccccc---------------------CCCCcceeEEEEccCCCEEEEEe-CCCeEEEEEc
Q 040274          171 QILGDFSGSHNYSRYMGNS---------------------MVKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVP  222 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~  222 (359)
                      ++||+..+ .....+..+.                     ......|.+++|+|++.+|++++ .++.+.+|..
T Consensus       265 ~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          265 FAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99997665 3333222110                     00223689999999999999999 8999999887

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8e-21  Score=169.83  Aligned_cols=163  Identities=15%  Similarity=0.227  Sum_probs=139.3

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|+|+|++|++++.                          .|.++.|  ++.+|++|+.||.|++||  .+..+..+
T Consensus        63 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~  138 (313)
T 3odt_A           63 NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL  138 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred             EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence            88999999999999876                          7888888  577999999999999999  67788888


Q ss_pred             ecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 040274          106 LYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       106 ~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~  179 (359)
                      ..|...|.++.|+| ++.+|++++.|+.|++||.  ...+..+    ...+.+++|+|++ +++++.++.|++||+... 
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~-  215 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG-  215 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC-
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch-
Confidence            89999999999998 9999999999999999994  4444444    4568999999999 999999999999997554 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .....+..|..    .|++++|+|++ .|++|+.||.+.+|....+.
T Consensus       216 ~~~~~~~~~~~----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          216 DVLRTYEGHES----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             CEEEEEECCSS----CEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             hhhhhhhcCCc----eEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            55555655544    89999999999 68999999999998765543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=8.2e-21  Score=170.29  Aligned_cols=150  Identities=15%  Similarity=0.156  Sum_probs=122.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----eEEeecCCCCeEEEEEecCCCE---EEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL----LIKMLYHQGPVSALAFHPNGHL---MATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~----~~~~~~h~~~v~~l~~~p~g~~---l~s~~~d~~i~vwd~~~~  141 (359)
                      .+.++.+++++.+|++++.||.|++||+.+++.    ......|.+.|.++.++|++..   +++++.+++|++||....
T Consensus       152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            678899999999999999999999999988753    3445578899999999996653   346778999999999988


Q ss_pred             eeeEee--cCCceeEEEcCCC--cEEEE--cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          142 EVLQTL--TGHAKTLDFSQKG--LLAVG--TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       142 ~~~~~~--~~~v~~~~~s~~g--l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ......  ...+..+.|+|++  +++++  .|+.|+|||+.+. ..+..+.+|..    .|++++|+|+|.+|++|+.||
T Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~----~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTS----RVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSCEEEEETTT
T ss_pred             cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCC
Confidence            776655  4568999999998  55544  6899999997654 56666777754    899999999999999999999


Q ss_pred             eEEEEEcC
Q 040274          216 WSGILVPR  223 (359)
Q Consensus       216 ~~~i~~~g  223 (359)
                      .++||.-.
T Consensus       307 ~v~iWd~~  314 (318)
T 4ggc_A          307 TLRLWRCF  314 (318)
T ss_dssp             EEEEECCS
T ss_pred             eEEEEECC
Confidence            87777543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.8e-22  Score=189.71  Aligned_cols=170  Identities=11%  Similarity=0.043  Sum_probs=134.8

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLM--RVNPFN-GVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l--~~sp~~-~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      .+++|+|++ +|++|+.                        .|+++  .|+|++ .+|++|+.||+|+|||+++++++..
T Consensus       270 ~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~  348 (524)
T 2j04_B          270 TTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT  348 (524)
T ss_dssp             EEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred             EEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence            899999865 7888775                        68888  568887 8999999999999999999888878


Q ss_pred             eecCCC--CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          105 MLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       105 ~~~h~~--~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      +.+|..  .|.+++|+|++..|++++.|++|++||++++.++.++   .+.|++++|||+|  +++++.|++|++||+..
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            777764  5889999999999999999999999999998876666   4568999999999  88999999999998532


Q ss_pred             CC----c---------cc-cc--------------------------cccccCCCCcceeEEEEccCCC---EEEEEeCC
Q 040274          178 GS----H---------NY-SR--------------------------YMGNSMVKGYQIGKVSFRPYED---VLGIGHSM  214 (359)
Q Consensus       178 ~~----~---------~~-~~--------------------------~~~~~~~~~~~v~~~~~sp~~~---~l~~g~~d  214 (359)
                      .-    .         .+ ..                          ..... .+...|.+++|+|++.   +|++|+.+
T Consensus       429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~-gh~~~V~~Vafsp~~~~~~~lAsg~~~  507 (524)
T 2j04_B          429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID-AHGINITCTKWNETSAGGKCYAFSNSA  507 (524)
T ss_dssp             STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred             hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec-CCCceEEEEECCCCCCccHHHHhhccC
Confidence            10    0         00 00                          00000 1445789999999854   89999999


Q ss_pred             CeEEEEEcC
Q 040274          215 GWSGILVPR  223 (359)
Q Consensus       215 g~~~i~~~g  223 (359)
                      |.++||...
T Consensus       508 g~vrlw~l~  516 (524)
T 2j04_B          508 GLLTLEYLS  516 (524)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEEcc
Confidence            988888754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=176.05  Aligned_cols=170  Identities=15%  Similarity=0.193  Sum_probs=140.3

Q ss_pred             eEEEECCC---CCEEEEecc------------------------ceeEEE------EcCCCCEEEEEeCCCeEEEEeCCC
Q 040274           52 ILWILPSS---GRYMAVAGR------------------------RTDLMR------VNPFNGVVSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spd---g~~l~~~~~------------------------~v~~l~------~sp~~~~l~tg~~dg~v~lwd~~~   98 (359)
                      .+++|+|+   |.+|++|+.                        .|.++.      |+|++.+|++|+.||.|++||+.+
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            89999998   799999876                        688885      578899999999999999999998


Q ss_pred             Cc-ceEEeecCCC----CeEEEE----EecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcC---CC--cE
Q 040274           99 SA-LLIKMLYHQG----PVSALA----FHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ---KG--LL  162 (359)
Q Consensus        99 ~~-~~~~~~~h~~----~v~~l~----~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~---~g--l~  162 (359)
                      +. ++..+..|.+    .|.+++    |+|++.+|++++.|+.|++||+++++.+...  ...+.+++|+|   ++  ++
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEE
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEE
Confidence            86 6777776655    899998    6789999999999999999999998875544  56799999999   77  88


Q ss_pred             EEEcCCcEEEEcCCCCCccccccc-----cccCCCCcceeEEEEccCCC-EEEEEeCCCeEEEEEcCCCC
Q 040274          163 AVGTGSFAQILGDFSGSHNYSRYM-----GNSMVKGYQIGKVSFRPYED-VLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~-~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +++.|+.|++||+... .....+.     .|    ...|++++|+|++. +|++|+.||.+.+|....+.
T Consensus       229 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQ-HPTKGFASVSEKAH----KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEESTTEEEEEEEEEE-ETTTEEEEEEEECC----SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EECCCCeEEEEeCcCC-CcccceeeeccCCC----cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            8889999999997554 3333332     44    34899999999998 89999999999999765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.6e-21  Score=183.95  Aligned_cols=162  Identities=8%  Similarity=0.081  Sum_probs=132.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-----
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL-----  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~-----  101 (359)
                      .+++|||||.+||+++.                         .|.+++|||+|++|++|+.||+|++||+.++..     
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence            99999999999998776                         289999999999999999999999999998753     


Q ss_pred             --eEEe----ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee---eEee----cCCceeEEEcCCCcEEEEcCC
Q 040274          102 --LIKM----LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV---LQTL----TGHAKTLDFSQKGLLAVGTGS  168 (359)
Q Consensus       102 --~~~~----~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---~~~~----~~~v~~~~~s~~gl~~~~~d~  168 (359)
                        +.++    .+|...|.+++|+|+|  +++++.|++|++||+..+..   .+++    ...|.+++|+ +..++++.++
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~~~  245 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTCPG  245 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEECSS
T ss_pred             eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEeCC
Confidence              5666    5778899999999999  88889999999999988763   2344    2458999999 4455555589


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEE--ccCCCEEEEEeCCCeEEEEEc
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF--RPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +|++||+... .......+|.    ..|+++.|  +|++..|++++.+|. ++|..
T Consensus       246 tIkLWd~~~~-~~~~~~~gh~----~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          246 YVHKIDLKNY-SISSLKTGSL----ENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EEEEEETTTT-EEEEEECSCC----SCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             eEEEEECCCC-eEEEEEcCCC----ceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            9999996544 3322222454    38999999  999999999999999 88764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.87  E-value=2.6e-21  Score=195.92  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=134.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|++++|+|++.+|++|+.||.|++||+.++..+..+.+|.++|++++|+|++.+|++++.||.|++||+.+++.+..+.
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999888774


Q ss_pred             ---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 040274          149 ---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~~dg~~~i~~~  222 (359)
                         +.|++++|+|+|  +++++.|+.|.+||+.........+..|..    .|.+++|+| ++.+|++|+.||.+.+|..
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~  170 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC----cEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence               568999999999  778888999999997655445555555544    799999999 8899999999999988654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.6e-21  Score=182.04  Aligned_cols=174  Identities=13%  Similarity=0.148  Sum_probs=140.2

Q ss_pred             eEEEECCCCCEEEEecc----c--------------------eeEEE----------------EcCCCCEEEEEeCCCeE
Q 040274           52 ILWILPSSGRYMAVAGR----R--------------------TDLMR----------------VNPFNGVVSLGHSGGTV   91 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----~--------------------v~~l~----------------~sp~~~~l~tg~~dg~v   91 (359)
                      .+++|+|++.+|++|+.    .                    +..+.                ++|++.+|++|+.||.|
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  194 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV  194 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence            89999999999999876    1                    12222                45678999999999999


Q ss_pred             EEEeCCCCcceEEeec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----CCceeEEEcC----CC-
Q 040274           92 TMWKPTTSALLIKMLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----GHAKTLDFSQ----KG-  160 (359)
Q Consensus        92 ~lwd~~~~~~~~~~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~v~~~~~s~----~g-  160 (359)
                      ++||+.+++++..+.+  |.+.|++++|+|++.+|++|+.||.|++||+++++++.++.    ..|++++|+|    ++ 
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc
Confidence            9999999999999988  89999999999999999999999999999999999988772    3478996655    56 


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccC----------------------CCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSM----------------------VKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                       +++++.|+.|++||+..+ .....+..|..                      .+...|++++|+ ++.+|++|+.||.+
T Consensus       275 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i  352 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred             EEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence             677778999999997654 32222222110                      133479999999 78999999999999


Q ss_pred             EEEEcCCCCC
Q 040274          218 GILVPRSSEP  227 (359)
Q Consensus       218 ~i~~~gs~~~  227 (359)
                      .+|....+..
T Consensus       353 ~~wd~~~~~~  362 (437)
T 3gre_A          353 VMFSLNELSS  362 (437)
T ss_dssp             EEEETTCGGG
T ss_pred             EEEECCCccc
Confidence            9998766543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.87  E-value=4.2e-21  Score=177.91  Aligned_cols=169  Identities=15%  Similarity=0.110  Sum_probs=142.4

Q ss_pred             eEEEECCC----C---CEEEEecc---------------------------------ceeEEEEc----CCCCE-EEEEe
Q 040274           52 ILWILPSS----G---RYMAVAGR---------------------------------RTDLMRVN----PFNGV-VSLGH   86 (359)
Q Consensus        52 ~~l~~spd----g---~~l~~~~~---------------------------------~v~~l~~s----p~~~~-l~tg~   86 (359)
                      .+++|+|+    |   ++|++++.                                 .|.+++|+    |++.+ |++|+
T Consensus        66 ~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  145 (397)
T 1sq9_A           66 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD  145 (397)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred             EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence            89999999    9   99998775                                 27889999    99999 99999


Q ss_pred             CCCeEEEEeCCC------CcceE-----Eee-------cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           87 SGGTVTMWKPTT------SALLI-----KML-------YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        87 ~dg~v~lwd~~~------~~~~~-----~~~-------~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .||.|++||+.+      +..+.     .+.       .|...|++++|+|++ +|++++.|+.|++||+++++++..+.
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence            999999999998      66666     774       489999999999999 99999999999999999998887775


Q ss_pred             C---------CceeEEEcCCC--cEEEEcC---CcEEEEcCCCCCcccccccc-------------ccCCCCcceeEEEE
Q 040274          149 G---------HAKTLDFSQKG--LLAVGTG---SFAQILGDFSGSHNYSRYMG-------------NSMVKGYQIGKVSF  201 (359)
Q Consensus       149 ~---------~v~~~~~s~~g--l~~~~~d---~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~  201 (359)
                      .         .+.+++|+|++  +++++.|   +.|++||+... .....+..             |..    .|.+++|
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~  299 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSS----WVMSLSF  299 (397)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSS----CEEEEEE
T ss_pred             ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCC----cEEEEEE
Confidence            4         48999999999  7777788   99999997654 45555555             543    7999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          202 RPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +|++.+|++|+.||.+.+|....+.
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999999999999999999876553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3e-21  Score=181.63  Aligned_cols=170  Identities=12%  Similarity=0.120  Sum_probs=139.2

Q ss_pred             eEEEECC-CCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC---CC
Q 040274           52 ILWILPS-SGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT---TS   99 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~---~~   99 (359)
                      .+++|+| +|.+|++|+.                            .|++++|+|++.+|++|+.||.|++||+.   ++
T Consensus        67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  146 (437)
T 3gre_A           67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE  146 (437)
T ss_dssp             EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET
T ss_pred             EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC
Confidence            9999999 9999999986                            68999999999999999999999999994   45


Q ss_pred             cceEEeec------------CCCCeEEEE--EecCCCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC
Q 040274          100 ALLIKMLY------------HQGPVSALA--FHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG  160 (359)
Q Consensus       100 ~~~~~~~~------------h~~~v~~l~--~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g  160 (359)
                      ..+..+.+            +...+.++.  ++|++.+|++++.|+.|++||+++++++..+.     +.|++++|+|++
T Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          147 SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC  226 (437)
T ss_dssp             TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred             ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence            44433322            455667776  55789999999999999999999999888874     458999999999


Q ss_pred             --cEEEEcCCcEEEEcCCCCCccccccc-cccCCCCcceeEEEEcc----CCCEEEEEeCCCeEEEEEcCCCC
Q 040274          161 --LLAVGTGSFAQILGDFSGSHNYSRYM-GNSMVKGYQIGKVSFRP----YEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       161 --l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp----~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                        +++++.|+.|++||+... .....+. .|    ...|.+++|+|    ++.+|++|+.||.+.+|....+.
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFN-VLIRSWSFGD----HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTT-EEEEEEBCTT----CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             CEEEEEcCCCeEEEEEcCCc-cEEEEEecCC----CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence              788889999999997654 4444332 33    23799996665    67899999999999999876554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.4e-21  Score=192.57  Aligned_cols=171  Identities=14%  Similarity=0.152  Sum_probs=141.9

Q ss_pred             eEEEECCC--CCEEEEecc-------------------------ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCC--c
Q 040274           52 ILWILPSS--GRYMAVAGR-------------------------RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTS--A  100 (359)
Q Consensus        52 ~~l~~spd--g~~l~~~~~-------------------------~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~--~  100 (359)
                      ++++|+|+  |++|++|+.                         .|++++|+|+  +.+|++|+.||.|++||+.++  .
T Consensus        57 ~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             EEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             EEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence            89999988  999999886                         7999999998  999999999999999999877  3


Q ss_pred             ceEEeecCCCCeEEEEEec-------------CCCEEEEecCCCeEEEEEcCCC----eeeEee---cCCceeEEEcCC-
Q 040274          101 LLIKMLYHQGPVSALAFHP-------------NGHLMATTGKECKIKIWDLRKY----EVLQTL---TGHAKTLDFSQK-  159 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p-------------~g~~l~s~~~d~~i~vwd~~~~----~~~~~~---~~~v~~~~~s~~-  159 (359)
                      ....+.+|...|++++|+|             ++.+|++|+.||.|++||++++    .++..+   .+.|++++|+|+ 
T Consensus       137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  216 (753)
T 3jro_A          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (753)
T ss_dssp             CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence            4456678999999999999             5899999999999999999876    444555   456899999999 


Q ss_pred             --C--cEEEEcCCcEEEEcCCCCCcccc-ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          160 --G--LLAVGTGSFAQILGDFSGSHNYS-RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       160 --g--l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        |  +++++.||.|++||+........ ....... +...|++++|+|+|.+|++|+.||.+.+|...
T Consensus       217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence              8  88888999999999766422211 1111111 44479999999999999999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=9.6e-21  Score=179.57  Aligned_cols=176  Identities=15%  Similarity=0.170  Sum_probs=143.0

Q ss_pred             EECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC
Q 040274           55 ILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP  111 (359)
Q Consensus        55 ~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~  111 (359)
                      ++++++.+|++|+.                       .|++++|+|++ +|++|+.||+|++||+.++.++..+.+|.+.
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~  205 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST  205 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc
Confidence            44557889999876                       79999999988 9999999999999999999999999999999


Q ss_pred             eEEEEEe--cCCCEEEEecCCCeEEEEEcCCCeee-----------------------EeecCCc-eeEEEcCCC--cEE
Q 040274          112 VSALAFH--PNGHLMATTGKECKIKIWDLRKYEVL-----------------------QTLTGHA-KTLDFSQKG--LLA  163 (359)
Q Consensus       112 v~~l~~~--p~g~~l~s~~~d~~i~vwd~~~~~~~-----------------------~~~~~~v-~~~~~s~~g--l~~  163 (359)
                      |.+++|+  +++.+|++++.|+.|++||+.++...                       ..+.++. ...++++++  +++
T Consensus       206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  285 (464)
T 3v7d_B          206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS  285 (464)
T ss_dssp             EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEE
Confidence            9999998  57889999999999999999876532                       2232221 223345666  888


Q ss_pred             EEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------
Q 040274          164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------  219 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------  219 (359)
                      ++.|+.|++||+... .....+..|..    .|.+++|+|++.+|++|+.||.+.+                        
T Consensus       286 ~~~d~~i~vwd~~~~-~~~~~~~~~~~----~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          286 GSYDNTLIVWDVAQM-KCLYILSGHTD----RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             EETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EeCCCeEEEEECCCC-cEEEEecCCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            899999999997554 55555555543    8999999999999999999999887                        


Q ss_pred             ----EEcCCCCCceeeeccCC
Q 040274          220 ----LVPRSSEPNFDSWVANP  236 (359)
Q Consensus       220 ----~~~gs~~~~~~~~~~~~  236 (359)
                          +++++.|+.+++|+.+.
T Consensus       361 ~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          361 SDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             CSSEEEEEETTSEEEEEETTT
T ss_pred             cCCEEEEEeCCCcEEEEECCC
Confidence                45666778888888754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=1.7e-20  Score=172.24  Aligned_cols=168  Identities=10%  Similarity=0.071  Sum_probs=133.7

Q ss_pred             eEEEECCCCCEEEEecc--------------------ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCC
Q 040274           52 ILWILPSSGRYMAVAGR--------------------RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQG  110 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~  110 (359)
                      .+++|+|||++|++|+.                    .+..+++.++++.+ ++|+.|++|++||+.+++++..+. |..
T Consensus        23 ~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~  101 (355)
T 3vu4_A           23 TDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDA  101 (355)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSS
T ss_pred             EEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCC
Confidence            89999999999999876                    46678888887776 567788999999999999888875 667


Q ss_pred             CeEEEEEecCC-----------------------------------CEEEE--ecCCCeEEEEEcCCCe-----------
Q 040274          111 PVSALAFHPNG-----------------------------------HLMAT--TGKECKIKIWDLRKYE-----------  142 (359)
Q Consensus       111 ~v~~l~~~p~g-----------------------------------~~l~s--~~~d~~i~vwd~~~~~-----------  142 (359)
                      .|.++.|+++.                                   .++++  |+.||.|++||+.++.           
T Consensus       102 ~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          102 PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------------
T ss_pred             ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            89998888753                                   23444  5778999999998754           


Q ss_pred             ----e-eEee---cCCceeEEEcCCC--cEEEEcCCc-EEEEcCCCCCccccccc-c-ccCCCCcceeEEEEccCCCEEE
Q 040274          143 ----V-LQTL---TGHAKTLDFSQKG--LLAVGTGSF-AQILGDFSGSHNYSRYM-G-NSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       143 ----~-~~~~---~~~v~~~~~s~~g--l~~~~~d~~-i~v~d~~~~~~~~~~~~-~-~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                          + +..+   .+.|++++|+|+|  +++++.|++ |+|||+.++ .....+. + |.    ..|++++|+|+|.+|+
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~----~~v~~~~~s~~~~~l~  256 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDR----ADVVDMKWSTDGSKLA  256 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEEEECTTCC----SCEEEEEECTTSCEEE
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCC----CcEEEEEECCCCCEEE
Confidence                1 4555   4568999999999  888889998 999997655 4455554 3 53    3899999999999999


Q ss_pred             EEeCCCeEEEEEcCCC
Q 040274          210 IGHSMGWSGILVPRSS  225 (359)
Q Consensus       210 ~g~~dg~~~i~~~gs~  225 (359)
                      +|+.|+.+.+|.....
T Consensus       257 s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          257 VVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEETTCEEEEEESSCC
T ss_pred             EEECCCEEEEEEccCC
Confidence            9999999999986543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.6e-20  Score=166.45  Aligned_cols=161  Identities=16%  Similarity=0.188  Sum_probs=135.3

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeec-C
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLY-H  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~-h  108 (359)
                      .++.|  ++.+|++++.                     .+.++.|+| ++.+|++++.||.|++||  ....+..+.. |
T Consensus       108 ~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~  183 (313)
T 3odt_A          108 CSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIH  183 (313)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSC
T ss_pred             EEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccC
Confidence            66666  6778888775                     788999988 899999999999999999  4566777776 9


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      ...|.+++|+|++. +++++.|+.|++||+++++++..+.   +.+++++|+|+| +++++.|+.|++||+... .....
T Consensus       184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~  261 (313)
T 3odt_A          184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-SLKQV  261 (313)
T ss_dssp             SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-CEEEE
T ss_pred             cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-ceeEE
Confidence            99999999999998 9999999999999999999888873   568999999999 999999999999997655 45555


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +..|..    .|.+++|+|++. +++++.||.+.+|...
T Consensus       262 ~~~~~~----~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          262 ITLPAI----SIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EECSSS----CEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             EeccCc----eEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            555543    799999999998 5568888877776643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=1.4e-20  Score=184.02  Aligned_cols=164  Identities=10%  Similarity=0.052  Sum_probs=141.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcce-EEeecC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALL-IKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~-~~~~~h  108 (359)
                      .+++++|+|.+++++..                     .+.+++|+  +.+|++|+. ||.|++||+.++... ..+.+|
T Consensus       410 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~  487 (615)
T 1pgu_A          410 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL  487 (615)
T ss_dssp             EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred             eEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCc
Confidence            57888999988887432                     68889998  889999999 999999999987655 667789


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----CCceeEEEcC----------CC--cEEEEcCCcEEE
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----GHAKTLDFSQ----------KG--LLAVGTGSFAQI  172 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~v~~~~~s~----------~g--l~~~~~d~~i~v  172 (359)
                      ...|++++|+|++.+|++++.|+.|++||+.+++++..+.    ..|++++|+|          ++  +++++.|+.|++
T Consensus       488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i  567 (615)
T 1pgu_A          488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  567 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence            9999999999999999999999999999999999888764    4589999999          88  778888999999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ||+.........+..|..    .|++++|+|++. |++++.||.+.+|..
T Consensus       568 w~~~~~~~~~~~~~~h~~----~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          568 YSVKRPMKIIKALNAHKD----GVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             EESSCTTCCEEETTSSTT----CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             EECCCCceechhhhcCcc----ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            998665456666666644    899999999999 999999998777754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=2.9e-20  Score=169.75  Aligned_cols=110  Identities=16%  Similarity=0.281  Sum_probs=98.4

Q ss_pred             ceeEEEEcCC---CCEEEEEeCCCeEEEEeCCC-Ccce-EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee
Q 040274           69 RTDLMRVNPF---NGVVSLGHSGGTVTMWKPTT-SALL-IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~---~~~l~tg~~dg~v~lwd~~~-~~~~-~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~  143 (359)
                      .|++++|+|+   +.+|++|+.||.|++||+.+ +..+ ..+.+|.+.|++++|+|++.+|++++.||.|++||+.+++.
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  120 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA  120 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence            8999999998   59999999999999999997 5554 67889999999999999999999999999999999999887


Q ss_pred             eEee--cCCceeEEE--cCCC--cEEEEcCCcEEEEcCCCC
Q 040274          144 LQTL--TGHAKTLDF--SQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       144 ~~~~--~~~v~~~~~--s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      +...  ...|++++|  +|++  +++++.|+.|++||+...
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          121 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            6655  567999999  8888  788889999999997543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=1.9e-20  Score=198.17  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=136.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|++++|+|++.+|++|+.||+|++||+.++..+..+.+|.+.|++++|+|+|.+|++++.|+.|++||+.+++++..+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999988884


Q ss_pred             ---CCceeEEEcCCC----cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          149 ---GHAKTLDFSQKG----LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       149 ---~~v~~~~~s~~g----l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                         +.|++++|+|++    +++++.|+.|.+||+..+ .....+.+|..    .|++++|+|++.+|++|+.||.+.+|.
T Consensus       697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~----~v~~~~~sp~~~~l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTN----SVNHCRFSPDDELLASCSADGTLRLWD  771 (1249)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSS----CEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCC----CEEEEEEecCCCEEEEEECCCeEEEEe
Confidence               458999999964    667888999999997654 45555566644    899999999999999999999999997


Q ss_pred             cCCC
Q 040274          222 PRSS  225 (359)
Q Consensus       222 ~gs~  225 (359)
                      ..++
T Consensus       772 ~~~~  775 (1249)
T 3sfz_A          772 VRSA  775 (1249)
T ss_dssp             GGGT
T ss_pred             CCCC
Confidence            6544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.85  E-value=6.9e-20  Score=171.87  Aligned_cols=146  Identities=15%  Similarity=0.272  Sum_probs=124.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .++.|+||+++ +|++|. |++|+|||+.+++.+..+.  +|...|++++|+|+|.+|++|+.||.|++||+.+++++..
T Consensus       107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            57889999864 777775 8999999999998877655  6778899999999999999999999999999999999988


Q ss_pred             ecC---CceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          147 LTG---HAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       147 ~~~---~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      +.+   .+.+++|++..+++++.|+.+.+||..........+..|..    .+..+.|+|++.+|++++.||.+.+|
T Consensus       185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~----~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ----EVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc----ceeeeeecCCCCeeeeeeccccceEE
Confidence            854   46777776555888999999999997766555566666654    79999999999999999999988774

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=3.3e-20  Score=168.17  Aligned_cols=171  Identities=6%  Similarity=-0.006  Sum_probs=140.1

Q ss_pred             eEEEECCCCC-EEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC-------
Q 040274           52 ILWILPSSGR-YMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT-------   98 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~-------   98 (359)
                      .+++|+|+|+ +|++|+.                         .|.+++|+| +.+|++|+.||.|++||+.+       
T Consensus        60 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence            8999999999 8988875                         468999999 99999999999999999987       


Q ss_pred             --CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC-Ceee-Eee----cCCceeEEEcC-CC--cEEEEcC
Q 040274           99 --SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVL-QTL----TGHAKTLDFSQ-KG--LLAVGTG  167 (359)
Q Consensus        99 --~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~-~~~~-~~~----~~~v~~~~~s~-~g--l~~~~~d  167 (359)
                        ++++..+. |...|.+++|+|++  +++++.|+.|++||+++ +... ...    ...+.+++|+| ++  +++++.+
T Consensus       139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence              77777765 89999999999987  99999999999999998 5432 111    45689999999 88  8888899


Q ss_pred             CcEEEEcCCCC-----CccccccccccC-----CCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          168 SFAQILGDFSG-----SHNYSRYMGNSM-----VKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       168 ~~i~v~d~~~~-----~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +.|.+|++...     ......+..|..     .+...|.+++|+|++.+|++|+.||.+.+|...++.
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            99999997554     244445555421     023379999999999999999999999998876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=1.5e-19  Score=176.83  Aligned_cols=164  Identities=11%  Similarity=0.097  Sum_probs=142.0

Q ss_pred             eEEEECC--CCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEeCC----CeEEEE
Q 040274           52 ILWILPS--SGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGHSG----GTVTMW   94 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~~d----g~v~lw   94 (359)
                      .+++|+|  ||++|++++.                               .|.+++|+|++.+|++++.+    +.|.+|
T Consensus        68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence            6899999  9999999875                               57889999999999999987    688888


Q ss_pred             eCCCCcceEEeecCCCCeEEEEEecCCC-EEEEecCCCeEEEEEcCCCeeeEeec---C---CceeEEEcCC-C--cEEE
Q 040274           95 KPTTSALLIKMLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRKYEVLQTLT---G---HAKTLDFSQK-G--LLAV  164 (359)
Q Consensus        95 d~~~~~~~~~~~~h~~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~~~~~~~~---~---~v~~~~~s~~-g--l~~~  164 (359)
                      |  ++..+..+.+|...|++++|+|++. +|++++.|+.|++||+.+++.+..+.   .   .|++++|+|+ |  ++++
T Consensus       148 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          148 D--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             T--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             E--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence            8  5678888999999999999999998 89999999999999999999888873   4   6899999999 8  7778


Q ss_pred             EcCCcEEEEcCCCCCcccccc-c---cccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          165 GTGSFAQILGDFSGSHNYSRY-M---GNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       165 ~~d~~i~v~d~~~~~~~~~~~-~---~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +.|+.|++||+... .....+ .   .|    ...|.+++|+ ++.+|++++.||.+.+|...
T Consensus       226 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          226 GSDRKISCFDGKSG-EFLKYIEDDQEPV----QGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             ETTCCEEEEETTTC-CEEEECCBTTBCC----CSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             eCCCeEEEEECCCC-CEeEEeccccccc----CCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            88999999997654 444444 3   44    3489999999 99999999999999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.84  E-value=2.9e-20  Score=173.06  Aligned_cols=146  Identities=11%  Similarity=0.072  Sum_probs=113.5

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCcce-----EEeecCCCCeEEEEEec--------CCCEEEEecCCCeEEEEEcCC
Q 040274           74 RVNPFNGVVSLGHSGGTVTMWKPTTSALL-----IKMLYHQGPVSALAFHP--------NGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        74 ~~sp~~~~l~tg~~dg~v~lwd~~~~~~~-----~~~~~h~~~v~~l~~~p--------~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .+++++.+|++|+.|++|+|||+.++...     ..+.+|.+.|++++|+|        ++++|++++.|++|+|||+.+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            33446778999999999999999887543     34568999999999998        789999999999999999988


Q ss_pred             CeeeEee---cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccccc---------------------ccccCCCC
Q 040274          141 YEVLQTL---TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRY---------------------MGNSMVKG  193 (359)
Q Consensus       141 ~~~~~~~---~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~---------------------~~~~~~~~  193 (359)
                      +.++..+   ...+.+++|+|++   +++++.|++|++||+..........                     ..... +.
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~  254 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG-IA  254 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C-CS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc-cc
Confidence            7765544   5678999999987   7788899999999976542211100                     00011 34


Q ss_pred             cceeEEEEc-cCCCEEEEEeCCCeEEEE
Q 040274          194 YQIGKVSFR-PYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       194 ~~v~~~~~s-p~~~~l~~g~~dg~~~i~  220 (359)
                      ..|.++.|+ |++..|++++.|+.+.+|
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vw  282 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRW  282 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence            468889987 799999999999998875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.84  E-value=3e-20  Score=173.03  Aligned_cols=167  Identities=11%  Similarity=0.062  Sum_probs=121.3

Q ss_pred             eEEEECC--------CCCEEEEecc-----------------------ceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q 040274           52 ILWILPS--------SGRYMAVAGR-----------------------RTDLMRVNPFN-GVVSLGHSGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~sp--------dg~~l~~~~~-----------------------~v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~   99 (359)
                      .+++|+|        ||++|++|+.                       .|.+++|+|++ .+|++|+.||+|++||+.++
T Consensus       140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            8899987        8999999987                       78999999977 48999999999999999876


Q ss_pred             cceEE-------------------------eecCCCCeEEEEEe-cCCCEEEEecCCCeEEEEEcCCCeeeEeec-----
Q 040274          100 ALLIK-------------------------MLYHQGPVSALAFH-PNGHLMATTGKECKIKIWDLRKYEVLQTLT-----  148 (359)
Q Consensus       100 ~~~~~-------------------------~~~h~~~v~~l~~~-p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----  148 (359)
                      .....                         ..+|...|.++.|+ |+|..|++++.|+++++||+..+.....+.     
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~  299 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK  299 (393)
T ss_dssp             C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred             cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence            54322                         23677889999997 799999999999999999998765443331     


Q ss_pred             ----------------CCceeEEEcCC--C-c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          149 ----------------GHAKTLDFSQK--G-L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       149 ----------------~~v~~~~~s~~--g-l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                                      .....+.|+|.  + + ++++.|+.|++||+..+ ........|..    +|.+++|+|||++|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~----~V~svafspdG~~L  374 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGM----PIVDFCWHQDGSHL  374 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSS----CEEEEEECTTSSEE
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCC----cEEEEEEcCCCCEE
Confidence                            11223445553  3 3 34556899999997655 44444445533    89999999999999


Q ss_pred             EEEeCCCeEEEEEcC
Q 040274          209 GIGHSMGWSGILVPR  223 (359)
Q Consensus       209 ~~g~~dg~~~i~~~g  223 (359)
                      ++++.+|.+.+.+.|
T Consensus       375 A~as~~Gv~lvrL~g  389 (393)
T 4gq1_A          375 AIATEGSVLLTRLMG  389 (393)
T ss_dssp             EEEESSEEEEEEEGG
T ss_pred             EEEeCCCeEEEEEeC
Confidence            999999876665544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.84  E-value=1.8e-19  Score=170.73  Aligned_cols=146  Identities=18%  Similarity=0.189  Sum_probs=124.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CC
Q 040274           74 RVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GH  150 (359)
Q Consensus        74 ~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~  150 (359)
                      ++++++.+|++|+.||.|++||+.++.++..+.+|...|++++|+|++.+|++++.|+.|++||+.+++++..+.   ..
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence            446778899999999999999999999999999999999999999999999999999999999999999998884   45


Q ss_pred             ceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          151 AKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       151 v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      |.+++|++.-+++++.|+.|++||+..... ...  .+   +...+..++|+|++.+|++|+ +|.+.+|...++.
T Consensus       355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~--~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          355 VGLLRLSDKFLVSAAADGSIRGWDANDYSR-KFS--YH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             EEEEEECSSEEEEEETTSEEEEEETTTCCE-EEE--EE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             EEEEEEcCCEEEEEeCCCcEEEEECCCCce-eee--ec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence            889999854489999999999999765432 222  12   223678899999999999998 8888888876654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.84  E-value=2.5e-19  Score=164.48  Aligned_cols=142  Identities=13%  Similarity=0.178  Sum_probs=109.9

Q ss_pred             EEEE--EeCCCeEEEEeCCCCc---------------c-eEEeecCCCCeEEEEEecCCCEEEEecCCCe-EEEEEcCCC
Q 040274           81 VVSL--GHSGGTVTMWKPTTSA---------------L-LIKMLYHQGPVSALAFHPNGHLMATTGKECK-IKIWDLRKY  141 (359)
Q Consensus        81 ~l~t--g~~dg~v~lwd~~~~~---------------~-~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~-i~vwd~~~~  141 (359)
                      ++++  |+.||.|++||+.++.               + +..+.+|.+.|++++|+|+|.+|++|+.|++ |++||++++
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            4444  5789999999998765               2 6788899999999999999999999999998 999999999


Q ss_pred             eeeEeec-C----CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc-ccccc------------------ccCCCCcc
Q 040274          142 EVLQTLT-G----HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY-SRYMG------------------NSMVKGYQ  195 (359)
Q Consensus       142 ~~~~~~~-~----~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~-~~~~~------------------~~~~~~~~  195 (359)
                      +++.++. +    .|++++|+|+|  +++++.|++|+|||+....... ..+..                  ... ....
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  307 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-KHVR  307 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-TTCC
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-CCCC
Confidence            9888874 3    48999999999  7888899999999976542111 01000                  000 1113


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          196 IGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       196 v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ...++|+|++.+|++++.||.+.+|...
T Consensus       308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          308 GCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             CCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            4678999999999999999988877543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=3.5e-19  Score=159.57  Aligned_cols=150  Identities=15%  Similarity=0.277  Sum_probs=124.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +++|+||+++ +|++| .|++|+|||+.+++++..+.  +|...|++++|+|++++|++|+.|++|++||+.+++++..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999986 77766 49999999999999887765  67788999999999999999999999999999999999888


Q ss_pred             cCC---ceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          148 TGH---AKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       148 ~~~---v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      .++   +.++.+.+..+++++.++.+.+|+..........+..|..    .+.++.|++++.+|++++.||.+.+|....
T Consensus       106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ----EVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC----ceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            554   3444444333788889999999997666555556666644    799999999999999999999999986554


Q ss_pred             C
Q 040274          225 S  225 (359)
Q Consensus       225 ~  225 (359)
                      +
T Consensus       182 ~  182 (318)
T 4ggc_A          182 G  182 (318)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=7.5e-19  Score=165.50  Aligned_cols=143  Identities=13%  Similarity=0.239  Sum_probs=117.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce---EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL---IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .|.+++|++  .+|++|+.||.|++||+.++..+   ..+.+|...|.+++|  ++.+|++|+.||.|++||+++++++.
T Consensus       215 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~  290 (435)
T 1p22_A          215 AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR  290 (435)
T ss_dssp             CEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence            577777763  48888888888888888877655   566789999999999  67899999999999999999999888


Q ss_pred             eec---CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          146 TLT---GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       146 ~~~---~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .+.   ..+.++.|+++-+++++.|+.|++||+.++ .....+..|..    .|.+++|  ++.+|++|+.||.+.+|..
T Consensus       291 ~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~----~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcC----cEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            884   457888886444889999999999997654 55556666644    7999998  7899999999999988754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.82  E-value=7.2e-19  Score=165.62  Aligned_cols=158  Identities=18%  Similarity=0.266  Sum_probs=130.7

Q ss_pred             EEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           53 LWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        53 ~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      ..+++++|++|++|+.                       .|.+++|  ++.+|++|+.||+|++||+.+++.+..+.+|.
T Consensus       136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  213 (435)
T 1p22_A          136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC  213 (435)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            3455669999999876                       6888888  78899999999999999999999999999999


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee---Eee---cCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL---QTL---TGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYS  183 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~---~~~---~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~  183 (359)
                      ..|.+++|++  .++++|+.||.|++||+.++..+   ..+   .+.|.+++|+.+-+++++.|+.|++||+.+. ....
T Consensus       214 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~  290 (435)
T 1p22_A          214 EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-EFVR  290 (435)
T ss_dssp             SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC-CEEE
T ss_pred             CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC-cEEE
Confidence            9999999974  59999999999999999987654   333   3468889984333888999999999997654 5555


Q ss_pred             ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          184 RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+..|..    .|.++.|  ++.+|++|+.||.+.+|.
T Consensus       291 ~~~~~~~----~v~~~~~--~~~~l~~g~~dg~i~iwd  322 (435)
T 1p22_A          291 TLNGHKR----GIACLQY--RDRLVVSGSSDNTIRLWD  322 (435)
T ss_dssp             EEECCSS----CEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             EEcCCCC----cEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence            6666643    7999988  578999999999988843

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.82  E-value=8.2e-19  Score=165.60  Aligned_cols=155  Identities=10%  Similarity=0.229  Sum_probs=131.4

Q ss_pred             EECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC
Q 040274           55 ILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP  111 (359)
Q Consensus        55 ~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~  111 (359)
                      +++++|++|++|+.                       .|.+++|+  +.+|++|+.||+|++||+.+++.+..+.+|...
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~  201 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST  201 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence            56678999999876                       78899997  569999999999999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccc
Q 040274          112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGN  188 (359)
Q Consensus       112 v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~  188 (359)
                      |.++.|+  +.++++++.||.|++||+.+++++..+.   ..+.+++|+..-+++++.|+.|++||+... .....+..|
T Consensus       202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~  278 (445)
T 2ovr_B          202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGH  278 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECCC
T ss_pred             EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-cEeEEecCC
Confidence            9999996  5689999999999999999999888774   457889884333888999999999996554 455555555


Q ss_pred             cCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          189 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       189 ~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ..    .|.++.|  ++.+|++|+.||.+.+|
T Consensus       279 ~~----~v~~~~~--~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          279 TN----RVYSLQF--DGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             SS----CEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred             CC----ceEEEEE--CCCEEEEEeCCCeEEEE
Confidence            43    7999998  88999999999998874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=4.3e-18  Score=157.45  Aligned_cols=162  Identities=10%  Similarity=0.126  Sum_probs=128.4

Q ss_pred             eEEEECCCCCEEE-Eecc----------------------ceeEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMA-VAGR----------------------RTDLMRVNPFNGVVSL-GHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~-~~~~----------------------~v~~l~~sp~~~~l~t-g~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++|+|+|++|+ +++.                      .+.+++|+|++.+|++ ++.++.|++||+.+++.+..+..
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  114 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT  114 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence            7999999999885 4433                      6889999999997755 55679999999999988877765


Q ss_pred             CCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCcc
Q 040274          108 HQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~  181 (359)
                      | ..+.+++|+|++.+| ++++.|+.|++||+.+++.+..+  ...+.+++|+|+|  + ++++.++.|.+||+... ..
T Consensus       115 ~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~  192 (391)
T 1l0q_A          115 G-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SV  192 (391)
T ss_dssp             S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eE
Confidence            4 568999999999977 78888999999999999988777  3457899999999  4 45556799999997554 33


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEe---CCCeEEEE
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH---SMGWSGIL  220 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~---~dg~~~i~  220 (359)
                      ...+..+     ..+.+++|+|++.+|++++   .++.+.+|
T Consensus       193 ~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          193 IDTVKVE-----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EEEEECS-----SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             EEEEecC-----CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            3333222     2689999999999988887   56766653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=2.9e-18  Score=158.59  Aligned_cols=167  Identities=10%  Similarity=0.078  Sum_probs=136.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++|+|+|++|++++.                       .+.+++|+|++..| ++++.|+.|++||+.+++.+..+..
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  156 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence            78999999998876543                       67899999999977 6788899999999999988888776


Q ss_pred             CCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEE---cCCcEEEEcCCCCC
Q 040274          108 HQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVG---TGSFAQILGDFSGS  179 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~---~d~~i~v~d~~~~~  179 (359)
                      | ..+.+++|+|++.+| ++++.|+.|++||+++++.+..+  ...+.+++|+|+|  +++++   .++.|.+||+... 
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-  234 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-  234 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-
Confidence            5 456999999999887 67788999999999999887777  4457899999999  55555   5799999997554 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEE-EEEeCCCeEEEEEcCCC
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSGILVPRSS  225 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~g~~dg~~~i~~~gs~  225 (359)
                      .....+..+.     .+.+++|+|++++| ++++.++.+.+|...++
T Consensus       235 ~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          235 KITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            4444444442     57899999999987 56688999999887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.81  E-value=4e-19  Score=181.97  Aligned_cols=148  Identities=11%  Similarity=0.086  Sum_probs=124.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .|++++|+|++.+|++|+.||+|+||+..+......+ .|...|++++|+| |.+|++++.|++|++||+.+++++..+ 
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~   96 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF   96 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc
Confidence            7999999999999999999999999999877665544 5788999999999 889999999999999999999888777 


Q ss_pred             -cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc----------cccccccCCCCcceeEEEEccC-CCEEEEEeC
Q 040274          148 -TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY----------SRYMGNSMVKGYQIGKVSFRPY-EDVLGIGHS  213 (359)
Q Consensus       148 -~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~----------~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~~  213 (359)
                       .+.|++++|+|++  +++++.||.|++||+.......          .....    |...|++++|+|+ +..|++|+.
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~----h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA----RLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS----CCCCCCEEEEETTEEEEEEEECS
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc----CCCCeEEEEEccCCCCEEEEEeC
Confidence             5679999999999  7788899999999976542110          11122    3448999999996 578999999


Q ss_pred             CCeEEEEEcC
Q 040274          214 MGWSGILVPR  223 (359)
Q Consensus       214 dg~~~i~~~g  223 (359)
                      ||.+ +|...
T Consensus       173 dg~v-lWd~~  181 (902)
T 2oaj_A          173 YVTL-TYSLV  181 (902)
T ss_dssp             SCEE-EEETT
T ss_pred             CCcE-EEECC
Confidence            9999 98653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=1.9e-18  Score=154.84  Aligned_cols=167  Identities=12%  Similarity=0.049  Sum_probs=121.7

Q ss_pred             eEEEECCC----CCEEEEeccceeEEEEcCCCCEEEEEe--CCCeEEEEeCC-CCcceEEeecCCCCeEEEEEec---CC
Q 040274           52 ILWILPSS----GRYMAVAGRRTDLMRVNPFNGVVSLGH--SGGTVTMWKPT-TSALLIKMLYHQGPVSALAFHP---NG  121 (359)
Q Consensus        52 ~~l~~spd----g~~l~~~~~~v~~l~~sp~~~~l~tg~--~dg~v~lwd~~-~~~~~~~~~~h~~~v~~l~~~p---~g  121 (359)
                      .+|+++||    +.++++++..+....+ ++++++.+++  .|+.|++|++. +++.+..+.+|...++.++|+|   ++
T Consensus       115 ~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~  193 (356)
T 2w18_A          115 RALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ  193 (356)
T ss_dssp             EEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST
T ss_pred             EEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC
Confidence            78888899    8899988763333333 5565666544  59999999994 5888888889999999999999   77


Q ss_pred             CEEEEecCCCeEEEEEcCCCeeeEeecC------CceeEEEcCCC-cE-------------EEEcCCcEEEEcCCCCCcc
Q 040274          122 HLMATTGKECKIKIWDLRKYEVLQTLTG------HAKTLDFSQKG-LL-------------AVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       122 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~v~~~~~s~~g-l~-------------~~~~d~~i~v~d~~~~~~~  181 (359)
                      .+|++++.|++|+|||+.++++++++.+      .+.+++|+|+| ++             +++.|++|++||..++ ..
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~  272 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LS  272 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-EE
T ss_pred             ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EE
Confidence            9999999999999999999999999853      25677899999 32             3567889999996554 33


Q ss_pred             cccc-----ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          182 YSRY-----MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       182 ~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ...+     .+|.    ..+.+..+  ++.++++|+.|+.++||...++.
T Consensus       273 l~v~~~~~p~Gh~----~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk  316 (356)
T 2w18_A          273 VGVMLYCLPPGQA----GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ  316 (356)
T ss_dssp             EEEEEECCCTTCC----CCEEEEEE--ETTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEEeeccCCCc----ceeEcccc--CCCEEEEEcCCCcEEEEECCCCc
Confidence            3222     1332    13444444  48889999999999998776654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=6.1e-19  Score=166.28  Aligned_cols=158  Identities=11%  Similarity=-0.004  Sum_probs=124.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------------ceeEEEEcCCCCEEE----EEeCCCe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------------RTDLMRVNPFNGVVS----LGHSGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------------~v~~l~~sp~~~~l~----tg~~dg~   90 (359)
                      ..+++++++.+|++++.                                     .|++++|+|++.+|+    +|+.|+.
T Consensus        40 n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~  119 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI  119 (434)
T ss_dssp             BCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred             cEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence            67888888888887763                                     289999999999999    7888999


Q ss_pred             EEEEeCCCC--------cc---eEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEE
Q 040274           91 VTMWKPTTS--------AL---LIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLD  155 (359)
Q Consensus        91 v~lwd~~~~--------~~---~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~  155 (359)
                      |+|||+.++        ++   +..+.+|...|++++|+|+ +.+|++++.||+|++||++++..+...   ...+++++
T Consensus       120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~  199 (434)
T 2oit_A          120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC  199 (434)
T ss_dssp             EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred             EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence            999998754        22   3445679999999999997 889999999999999999998765544   34689999


Q ss_pred             EcCCC--cEEEEcCCcEEEEcCCCCCccccccccccC---CCCcceeEEEEccCCCEEEEE
Q 040274          156 FSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSM---VKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       156 ~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      |+|+|  +++++.|+.|++||+. . .....+..+..   .+...|.+++|++++.++++.
T Consensus       200 wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          200 WSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             EcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            99999  7888899999999975 2 22222222211   022379999999998887543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.81  E-value=3e-18  Score=161.72  Aligned_cols=158  Identities=16%  Similarity=0.230  Sum_probs=128.8

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++.+  +|.+|++|+.                       .|.++.|  ++.++++|+.||.|++||+.+++++..+.+|
T Consensus       243 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          243 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             EEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            55555  7788888765                       6888888  7889999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec------CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccc
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT------GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~------~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      ...+.++.++  +.+|++++.||.|++||+++++++..+.      +.|++++|+++-+++++.||.|++||+.++ ...
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~  395 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG-EFI  395 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC-CEE
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC-cee
Confidence            9999988874  5699999999999999999999888874      347899997544889999999999997665 344


Q ss_pred             ccccc-ccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          183 SRYMG-NSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       183 ~~~~~-~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      ..+.. ....+...|++++|+|++.+|++|+.||.
T Consensus       396 ~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          396 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             eeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            33311 10113458999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.79  E-value=1.2e-17  Score=156.56  Aligned_cols=156  Identities=10%  Similarity=0.079  Sum_probs=127.1

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++|+|+|+++++++.                       .+.+++|+|++..++ +++.|+.|.+||+.+++.+..+..
T Consensus       173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  252 (433)
T 3bws_A          173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK  252 (433)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred             eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence            77899999999998865                       688999999998875 455799999999999988777765


Q ss_pred             CCCCeEEEEEecCCCEEEEec--------CCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--c-EEEEcCCcEEEEc
Q 040274          108 HQGPVSALAFHPNGHLMATTG--------KECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--L-LAVGTGSFAQILG  174 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~--------~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l-~~~~~d~~i~v~d  174 (359)
                      + ..+.+++|+|+|.+|++++        .|+.|++||+.+++.+..+  .+.+.+++|+|+|  + ++++.++.|.+||
T Consensus       253 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d  331 (433)
T 3bws_A          253 I-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD  331 (433)
T ss_dssp             C-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             C-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence            4 4589999999999999888        5889999999999887766  5678899999999  3 4456789999999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      +... .....+. +    ...+.+++|+|+|.+|++++.+
T Consensus       332 ~~~~-~~~~~~~-~----~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          332 LKEK-KVQKSIP-V----FDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             TTTT-EEEEEEE-C----SSSEEEEEECTTSSEEEEEECC
T ss_pred             CCCC-cEEEEec-C----CCCCCeEEEcCCCCEEEEEecC
Confidence            7543 3333332 2    2368999999999999888763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=1.2e-17  Score=156.63  Aligned_cols=168  Identities=11%  Similarity=0.013  Sum_probs=135.9

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      .+++|+|++.++++++.                            .|.+++|+|++.++++++.|+.|++||+.+++.+.
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence            68899997777777654                            57889999999999999999999999999999999


Q ss_pred             EeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcCCCeeeEeec--CCceeEEEcCCC--cEEEE--------cCCcE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLRKYEVLQTLT--GHAKTLDFSQKG--LLAVG--------TGSFA  170 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~~~~~~~~~~--~~v~~~~~s~~g--l~~~~--------~d~~i  170 (359)
                      .+..|...+.+++|+|++.+++ +++.|+.|++||+++++.+..+.  +.+.+++|+|+|  +++++        .|+.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            9989999999999999999875 55589999999999998887773  458999999999  55555        37899


Q ss_pred             EEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE-EEEeCCCeEEEEEcCCC
Q 040274          171 QILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSGILVPRSS  225 (359)
Q Consensus       171 ~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~g~~dg~~~i~~~gs~  225 (359)
                      .+||+... .....+ .+..    .+.+++|+|+++.| ++++.++.+.+|...++
T Consensus       286 ~~~d~~~~-~~~~~~-~~~~----~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          286 GIYSMDKE-KLIDTI-GPPG----NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEETTTT-EEEEEE-EEEE----CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEECCCC-cEEeec-cCCC----CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            99997654 333332 2322    68899999999755 56688888888876543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.76  E-value=5.9e-17  Score=151.84  Aligned_cols=156  Identities=10%  Similarity=0.064  Sum_probs=121.1

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVS-LGHSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~-tg~~dg--~v~lwd~~~~~~~~  103 (359)
                      .+++|||||++|++++.                         .+.+++|+|+|..|+ +++.++  .|++||+.++.. .
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~  260 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-R  260 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-E
Confidence            88999999999998763                         678999999999877 666665  499999998765 5


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecC-CC--eEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcC---CcEEEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGK-EC--KIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTG---SFAQIL  173 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~-d~--~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d---~~i~v~  173 (359)
                      .+..|...+.+++|+|||++|++++. ++  .|++||+.+++.....  ...+.+++|+|+|  +++++.+   ..|.+|
T Consensus       261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            67788899999999999999888776 44  6888899887643322  3457889999999  5555543   589999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      |+..+ .. ..+..+    . .+.+++|+|+|++|++++.++
T Consensus       341 d~~~~-~~-~~l~~~----~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          341 DLATG-GV-QVLSST----F-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             ETTTC-CE-EECCCS----S-SCEEEEECTTSSEEEEEEEET
T ss_pred             ECCCC-CE-EEecCC----C-CcCCeEEcCCCCEEEEEEcCC
Confidence            97654 22 233333    1 689999999999999888765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=4.6e-16  Score=146.61  Aligned_cols=181  Identities=11%  Similarity=0.083  Sum_probs=126.8

Q ss_pred             eEEEECCCCCEEE----Eecc----------------------------------ceeEEEEcCC-CCEEEEEeCCCeEE
Q 040274           52 ILWILPSSGRYMA----VAGR----------------------------------RTDLMRVNPF-NGVVSLGHSGGTVT   92 (359)
Q Consensus        52 ~~l~~spdg~~l~----~~~~----------------------------------~v~~l~~sp~-~~~l~tg~~dg~v~   92 (359)
                      .+++|+|+|++|+    +|+.                                  .|.+++|+|+ +.+|++|+.||+|+
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~  175 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA  175 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence            8999999999999    4332                                  5889999997 78999999999999


Q ss_pred             EEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----------CCceeEEEcCCC-c
Q 040274           93 MWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----------GHAKTLDFSQKG-L  161 (359)
Q Consensus        93 lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----------~~v~~~~~s~~g-l  161 (359)
                      +||+.++..+....+|...|++++|+|+|.+|++|+.||.|++||++ +.....+.          ..+.+++|++++ +
T Consensus       176 iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            99999987776777899999999999999999999999999999998 55444441          157899999998 4


Q ss_pred             EE--EEcCC------cEEEEcCCCCCcc-ccccccccC------CCCcceeEEEEccCCCEEEEEeCC-CeEEEEEcCCC
Q 040274          162 LA--VGTGS------FAQILGDFSGSHN-YSRYMGNSM------VKGYQIGKVSFRPYEDVLGIGHSM-GWSGILVPRSS  225 (359)
Q Consensus       162 ~~--~~~d~------~i~v~d~~~~~~~-~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~g~~d-g~~~i~~~gs~  225 (359)
                      ++  .+.+|      .+.+|++...... ...+..+..      ....+...+.+.++.+++++++.. +-+.++.....
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~  334 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD  334 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred             EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence            32  22332      3889997654211 111111100      011122334455788887776664 44667664433


Q ss_pred             CCceeeec
Q 040274          226 EPNFDSWV  233 (359)
Q Consensus       226 ~~~~~~~~  233 (359)
                      .+...+|.
T Consensus       335 ~~~~~~~~  342 (434)
T 2oit_A          335 QINWESWL  342 (434)
T ss_dssp             SSCEEEEE
T ss_pred             CCccEEEe
Confidence            33344443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.70  E-value=1.6e-15  Score=142.03  Aligned_cols=148  Identities=12%  Similarity=0.024  Sum_probs=111.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCC--eEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKEC--KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~--~i~vwd~~~~~  142 (359)
                      .+.+++|+|+|+.|++++.++   .|++||+.+++.. .+..|.+.+.+++|+|||++|+ +++.|+  .|++||+.+++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            799999999999999999875   9999999988765 5667888999999999999887 666655  49999999877


Q ss_pred             eeEee--cCCceeEEEcCCC--cEEEEc-CC--cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC-
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LLAVGT-GS--FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM-  214 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d-  214 (359)
                      .....  ...+.+++|+|+|  +++++. ++  .|.+||+..+ . ...+..+    +..+.+++|+|+|++|++++.+ 
T Consensus       259 ~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          259 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWE----GSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCS----SSEEEEEEECTTSSEEEEEEECS
T ss_pred             EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecC----CCcccCeEECCCCCEEEEEECcC
Confidence            63322  4457899999999  555554 34  6777886544 2 2222223    2378899999999999988765 


Q ss_pred             --CeEEEEEcC
Q 040274          215 --GWSGILVPR  223 (359)
Q Consensus       215 --g~~~i~~~g  223 (359)
                        +.+.+|...
T Consensus       333 g~~~i~~~d~~  343 (415)
T 2hqs_A          333 GQQHIAKQDLA  343 (415)
T ss_dssp             SCEEEEEEETT
T ss_pred             CceEEEEEECC
Confidence              344455443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=1.6e-15  Score=133.68  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeC--CCe--EEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHS--GGT--VTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~--dg~--v~lwd~~~~~~~~  103 (359)
                      .+++|+|||++|++++.                        .+.+++|+|++.+|++++.  ++.  |.+|++.++. ..
T Consensus        45 ~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~  123 (297)
T 2ojh_A           45 EAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR  123 (297)
T ss_dssp             EEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE
T ss_pred             EeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE
Confidence            89999999999998755                        4678999999999999983  344  4455555554 33


Q ss_pred             EeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcC--CCeeeEee---cCCceeEEEcCCC--cEEEE-cCCcEEEEc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLR--KYEVLQTL---TGHAKTLDFSQKG--LLAVG-TGSFAQILG  174 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~--~~~~~~~~---~~~v~~~~~s~~g--l~~~~-~d~~i~v~d  174 (359)
                      .+.. ...+.+++|+|++++|+ +++.|+.+.+|+++  ++.. ..+   ...+.+++|+|+|  +++++ .++.+.||+
T Consensus       124 ~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~  201 (297)
T 2ojh_A          124 LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR  201 (297)
T ss_dssp             ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence            4433 34589999999999877 77789999999864  3333 333   4568999999999  44444 478899998


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      +.........+..+.    ..+.++.|+|+|++|++++.+
T Consensus       202 ~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          202 VRVDGSSVERITDSA----YGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EETTSSCEEECCCCS----EEEEEEEECTTSSEEEEEEEE
T ss_pred             ECCCCCCcEEEecCC----cccCCeEECCCCCEEEEEEcC
Confidence            653333444444443    378999999999999988876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=7.1e-15  Score=133.49  Aligned_cols=173  Identities=12%  Similarity=0.024  Sum_probs=131.5

Q ss_pred             eEEEECCCCCEEEEec--------c---------------------ceeEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGRYMAVAG--------R---------------------RTDLMRVNPFNGVVSL-GHSGGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~--------~---------------------~v~~l~~sp~~~~l~t-g~~dg~v~lwd~~~~~~  101 (359)
                      +.++|+|+|++|++++        .                     .+.+++|+|+++++++ +..++.|.+||+.+++.
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  123 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV  123 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee
Confidence            8899999999888766        2                     5678999999986554 45579999999999988


Q ss_pred             eEEeecCCCC---------eEEEEEecCCCEEEEec--CCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEE
Q 040274          102 LIKMLYHQGP---------VSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVG  165 (359)
Q Consensus       102 ~~~~~~h~~~---------v~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~  165 (359)
                      +..+..+...         +.+++|+|+|+++++++  .++.|.+||+.+++.+..+.   ..+.+++|+|+|  +++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  203 (353)
T 3vgz_A          124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN  203 (353)
T ss_dssp             EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC
T ss_pred             EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEc
Confidence            8877755432         68899999999877765  47899999999999888774   237899999999  66777


Q ss_pred             cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC-CeEEEEEcCCC
Q 040274          166 TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM-GWSGILVPRSS  225 (359)
Q Consensus       166 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d-g~~~i~~~gs~  225 (359)
                      .++.|.+||+.+. .....+......+...+.+++|+|+|++|++++.+ +.+.+|...++
T Consensus       204 ~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          204 ADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             CCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            7899999996554 33333322111023357889999999987776654 77777766444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.67  E-value=3.3e-15  Score=144.62  Aligned_cols=165  Identities=6%  Similarity=-0.022  Sum_probs=126.2

Q ss_pred             EEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEEeecCC
Q 040274           54 WILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKP--TTSALLIKMLYHQ  109 (359)
Q Consensus        54 l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~--~~~~~~~~~~~h~  109 (359)
                      ..++|+|.++++++.                      .+++++|+|++++|++++.|++|.+||+  .+++++..+.. .
T Consensus       143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            346777777766554                      5789999999999999999999999999  78888888764 4


Q ss_pred             CCeEEEEEec----CCCEEEEec-CCCeEEEEEcCCCeeeEeecC--------------CceeEEEcCCC---cEEEEcC
Q 040274          110 GPVSALAFHP----NGHLMATTG-KECKIKIWDLRKYEVLQTLTG--------------HAKTLDFSQKG---LLAVGTG  167 (359)
Q Consensus       110 ~~v~~l~~~p----~g~~l~s~~-~d~~i~vwd~~~~~~~~~~~~--------------~v~~~~~s~~g---l~~~~~d  167 (359)
                      ..+.+++|+|    +|++|++++ .+++|.+||..+++++..+..              .+.++.++|++   +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            5679999999    999999888 489999999999998877732              46789999987   4555567


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVPR  223 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~g  223 (359)
                      +.|.+||.............+    +..+.++.|+|+|++|++++ .++.+.+|...
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~----~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGA----APFLHDGGWDSSHRYFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEEC----CSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CeEEEEEecCCCcceeEEecc----CcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence            999999975542221111112    23578899999999876554 47777775443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.66  E-value=3e-15  Score=150.11  Aligned_cols=138  Identities=8%  Similarity=0.080  Sum_probs=104.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      |.+++|||||++|++++. +.|++||+.++.  .+..+..|...+.+++|+|||++|++++ ++.|++||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            678999999999999986 999999999873  4556677888999999999999999887 468999999988765544


Q ss_pred             cCC-------------------ceeEEEcCCC--cEEEEcCC---------------------------------cEEEE
Q 040274          148 TGH-------------------AKTLDFSQKG--LLAVGTGS---------------------------------FAQIL  173 (359)
Q Consensus       148 ~~~-------------------v~~~~~s~~g--l~~~~~d~---------------------------------~i~v~  173 (359)
                      ...                   +.+++|||||  +++++.++                                 .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            211                   4789999999  55665554                                 78889


Q ss_pred             cCCC-CCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          174 GDFS-GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       174 d~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      |+.. + ......... . +...+.+++| |||++|++++.
T Consensus       269 d~~~~~-~~~~~~~~~-~-~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          269 SPAEQA-QTQWIDLGK-E-QDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             CSSTTC-CCEEECCCS-C-SSEEEEEEEE-EETTEEEEEEE
T ss_pred             ECCCCC-ceEEecCCC-C-cceEEEEEEe-CCCCEEEEEEe
Confidence            9655 4 322222110 1 2347999999 99999987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=9.6e-15  Score=131.84  Aligned_cols=169  Identities=14%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CcceE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTT-SALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~-~~~~~  103 (359)
                      .+++|+|+|++|++++.                          .+.+++|+|++.+|++++ .++.|.+||+.+ +....
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A           87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence            78999999998866543                          577899999999888877 899999999987 54332


Q ss_pred             ----Eeec-CCCCeEEEEEecCCCEEEEe-cCCCeEEEEEcCC--Cee--eEee---cC------CceeEEEcCCC--cE
Q 040274          104 ----KMLY-HQGPVSALAFHPNGHLMATT-GKECKIKIWDLRK--YEV--LQTL---TG------HAKTLDFSQKG--LL  162 (359)
Q Consensus       104 ----~~~~-h~~~v~~l~~~p~g~~l~s~-~~d~~i~vwd~~~--~~~--~~~~---~~------~v~~~~~s~~g--l~  162 (359)
                          .+.. ....+.+++|+|+|.+++++ ..++.|.+||+..  +..  +..+   ..      .+.+++|+|+|  ++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence                2232 34578899999999976554 5889999999954  332  2222   11      24579999999  44


Q ss_pred             EEE-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEEEc
Q 040274          163 AVG-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVP  222 (359)
Q Consensus       163 ~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~  222 (359)
                      +++ .++.|.+||+.........+..... .. .+.+++|+|+|++|++++ .++.+.+|..
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            333 6799999997532111222211111 12 488999999999888887 5787777744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=1.1e-14  Score=131.33  Aligned_cols=171  Identities=9%  Similarity=0.070  Sum_probs=120.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeC-CCeEEEEeCC---CCc
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHS-GGTVTMWKPT---TSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~---~~~  100 (359)
                      .+++|+|+|++|++++.                           .+.+++|+|++.+|++++. ++.|.+||+.   +..
T Consensus        41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             ceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence            78999999998877654                           4678899999998876664 8899999994   334


Q ss_pred             ceEEeecCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCC-CeeeE----ee----cCCceeEEEcCCC--cEEEE-cC
Q 040274          101 LLIKMLYHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRK-YEVLQ----TL----TGHAKTLDFSQKG--LLAVG-TG  167 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~-~~~~~----~~----~~~v~~~~~s~~g--l~~~~-~d  167 (359)
                      .+..+.. ...+.+++|+|+|+++++++ .++.|.+||+.+ +....    .+    ...+.+++|+|+|  +++++ .+
T Consensus       121 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~  199 (343)
T 1ri6_A          121 VVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN  199 (343)
T ss_dssp             EEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             ccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence            4444443 34589999999999888777 899999999987 64421    22    2256789999999  44444 67


Q ss_pred             CcEEEEcCCCC-Ccc--ccccccccC--CCCcceeEEEEccCCCEEEEE-eCCCeEEEEEcC
Q 040274          168 SFAQILGDFSG-SHN--YSRYMGNSM--VKGYQIGKVSFRPYEDVLGIG-HSMGWSGILVPR  223 (359)
Q Consensus       168 ~~i~v~d~~~~-~~~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~g-~~dg~~~i~~~g  223 (359)
                      +.|.+||+... +..  .........  .....+.+++|+|+|++|+++ ..++.+.+|...
T Consensus       200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            89999997432 111  111111100  012256789999999988754 468888888765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=1.1e-14  Score=132.13  Aligned_cols=158  Identities=6%  Similarity=0.044  Sum_probs=124.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .++.|+|+|+++++++.                         .+.+++|+|++.++++++.++.|.+||+.+++.+..+.
T Consensus       144 ~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~  223 (353)
T 3vgz_A          144 RELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK  223 (353)
T ss_dssp             EEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE
Confidence            56899999998877651                         37889999999999999999999999999998877766


Q ss_pred             c----CCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeEeec-CCceeEEEcCCC--cEEEE-cCCcEEEEcCCC
Q 040274          107 Y----HQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQTLT-GHAKTLDFSQKG--LLAVG-TGSFAQILGDFS  177 (359)
Q Consensus       107 ~----h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~~~~-~~v~~~~~s~~g--l~~~~-~d~~i~v~d~~~  177 (359)
                      .    +...+.+++|+|+|.++++++. ++.|.+||+.+++.+..+. +...+++|+|+|  +++++ .++.|.+||+.+
T Consensus       224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            4    4556888999999997766654 5999999999998877773 335789999999  44444 579999999654


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      . .....+...     ..+.+++|+|+|++|++++.++
T Consensus       304 ~-~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          304 Y-KVVKTFDTP-----THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             T-EEEEEEECC-----SEEEEEEECTTSCEEEEEEECC
T ss_pred             C-eEEEEEecC-----CCCCeEEEcCCCCEEEEEEccc
Confidence            4 444443332     2689999999999887777664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.64  E-value=1.5e-14  Score=130.28  Aligned_cols=165  Identities=8%  Similarity=-0.003  Sum_probs=123.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEe------------CCCe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGH------------SGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~------------~dg~   90 (359)
                      .+++|+|||+++++++.                             .+.+++|+|++.+|++++            .++.
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence            57889999987755432                             135689999999988886            5799


Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----------------------
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----------------------  148 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------  148 (359)
                      |.+||+.+++.+..+.. ...+.+++|+|+|++|+++  ++.|.+||+.+++.+..+.                      
T Consensus       117 i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  193 (337)
T 1pby_B          117 VALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             EEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             EEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc
Confidence            99999999887777654 4567889999999988887  6889999998876654331                      


Q ss_pred             -----------------------------------------------CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 040274          149 -----------------------------------------------GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       149 -----------------------------------------------~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~  180 (359)
                                                                     ..+.+++|+|+| ++.++ ++.|.+||+.+. .
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~-~  271 (337)
T 1pby_B          194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN-A  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT-E
T ss_pred             CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC-c
Confidence                                                           012358999999 44444 789999996543 3


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ....+...     ..+.+++|+|+|++|++++.++.+.+|...++.
T Consensus       272 ~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          272 SIKRVPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEEEECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CcceecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            33333322     257899999999999998888888888765543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.63  E-value=5e-14  Score=126.99  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=114.9

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcc-eEEeecCCCCeEEEEEecCCCEEEEecCCC---eEEEEEcCCCee
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSAL-LIKMLYHQGPVSALAFHPNGHLMATTGKEC---KIKIWDLRKYEV  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~---~i~vwd~~~~~~  143 (359)
                      .+ +++|+|++.++++++. ++.|.+||+.++.. ...+..+..++.+++|+|+|++|+++..++   .|.+||+.+++.
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~  120 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF  120 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe
Confidence            45 9999999997666665 88999999999987 677777777766699999999999665553   899999999988


Q ss_pred             eEeec--CCceeEEEcCCC--cEEE-EcCCc-EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCe
Q 040274          144 LQTLT--GHAKTLDFSQKG--LLAV-GTGSF-AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGW  216 (359)
Q Consensus       144 ~~~~~--~~v~~~~~s~~g--l~~~-~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~  216 (359)
                      +..+.  ..+.+++|+|+|  ++++ ..++. |.+|++...+...... ......+..+.+++|+|+|++|++++ .++.
T Consensus       121 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  199 (331)
T 3u4y_A          121 ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNS  199 (331)
T ss_dssp             EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCe
Confidence            87773  456899999999  4444 44578 9999976543322111 11001233589999999999665554 5788


Q ss_pred             EEEEEcCCCC
Q 040274          217 SGILVPRSSE  226 (359)
Q Consensus       217 ~~i~~~gs~~  226 (359)
                      +.+|...++.
T Consensus       200 v~v~d~~~~~  209 (331)
T 3u4y_A          200 IGILETQNPE  209 (331)
T ss_dssp             EEEEECSSTT
T ss_pred             EEEEECCCCc
Confidence            8888765544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.62  E-value=8.2e-14  Score=126.65  Aligned_cols=167  Identities=11%  Similarity=0.107  Sum_probs=116.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------c-------------eeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------R-------------TDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~-------------v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                      ..++|+|||++|++++.                       .             +.+++|+|++.+++++..++.|.+|+
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            78999999998887763                       0             45799999999666666788999999


Q ss_pred             CC-CCcce--EEeecC-CCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCC--Cee--eEee---c------CCceeEEEc
Q 040274           96 PT-TSALL--IKMLYH-QGPVSALAFHPNGHLMAT-TGKECKIKIWDLRK--YEV--LQTL---T------GHAKTLDFS  157 (359)
Q Consensus        96 ~~-~~~~~--~~~~~h-~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~--~~~--~~~~---~------~~v~~~~~s  157 (359)
                      +. ++...  ..+..+ ...+..++|+|+|++|++ +..++.|.+||+..  +..  +..+   .      ..+..++|+
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence            98 45432  222222 336788999999996555 56789999999874  443  2232   1      236789999


Q ss_pred             CCC--c-EEEEcCCcEEEEcCCCCCc--cccccccccCCCCcceeEEEEccCCCEEEEEeCC-CeEEEEEc
Q 040274          158 QKG--L-LAVGTGSFAQILGDFSGSH--NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM-GWSGILVP  222 (359)
Q Consensus       158 ~~g--l-~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d-g~~~i~~~  222 (359)
                      |+|  + ++...++.|.+|++...+.  ....+..    ++..+.+++|+|+|++|++++.+ +.+.+|..
T Consensus       249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST----EGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC----SSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec----CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            999  3 3444578999999753321  1222222    23357899999999998887764 66777644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.62  E-value=3.3e-15  Score=149.36  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=115.9

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCC---------CeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSG---------GTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~d---------g~v~lwd~~   97 (359)
                      ++++|+|||++++++..                         .|.+++|||||++|++++.+         +.|.+||+.
T Consensus        20 ~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             cccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence            88999999997766332                         18899999999999999864         788999999


Q ss_pred             CCcceEEee---cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC---Cc------------------ee
Q 040274           98 TSALLIKML---YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG---HA------------------KT  153 (359)
Q Consensus        98 ~~~~~~~~~---~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~v------------------~~  153 (359)
                      +++. ..+.   .|...+.+++|||||+.|++++. +.|++||+.+++.......   .+                  .+
T Consensus       100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence            8875 3333   44555899999999999999876 7999999998876554422   12                  68


Q ss_pred             EEEcCCC--cEEEEcCC----------------------------------cEEEEcCCCCCccccccccccC--CCCcc
Q 040274          154 LDFSQKG--LLAVGTGS----------------------------------FAQILGDFSGSHNYSRYMGNSM--VKGYQ  195 (359)
Q Consensus       154 ~~~s~~g--l~~~~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~~~--~~~~~  195 (359)
                      ++|||||  +++++.++                                  .|.+||+... .....+..+..  .+...
T Consensus       178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCCCCCGGGSSEE
T ss_pred             EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeCCccCCCccce
Confidence            9999999  55555432                                  7899996554 22222222100  01336


Q ss_pred             eeEEEEccCCCEEEEEeC
Q 040274          196 IGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       196 v~~~~~sp~~~~l~~g~~  213 (359)
                      +.+++|+|||++|++++.
T Consensus       257 ~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             EEEEEESSSSEEEEEEEE
T ss_pred             eEEEEEeCCCeEEEEEEc
Confidence            899999999998877654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=2.8e-14  Score=125.57  Aligned_cols=149  Identities=13%  Similarity=-0.030  Sum_probs=109.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEEeecC-CCCeEEEEEecCCCEEEEecC--CCe--EEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT-SALLIKMLYH-QGPVSALAFHPNGHLMATTGK--ECK--IKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~-~~~~~~~~~h-~~~v~~l~~~p~g~~l~s~~~--d~~--i~vwd~~~~~  142 (359)
                      .|.+++|+|++.+|++++ ++.|.+||+.+ +.....+..| ...+.+++|+|+|.+|++++.  ++.  |.+||+.++.
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence            799999999999999987 78999999998 8777666555 367899999999999999883  344  5555555544


Q ss_pred             eeEee--cCCceeEEEcCCC--cE-EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCe
Q 040274          143 VLQTL--TGHAKTLDFSQKG--LL-AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGW  216 (359)
Q Consensus       143 ~~~~~--~~~v~~~~~s~~g--l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~  216 (359)
                      . ..+  ...+.+++|+|+|  ++ +++.++.+.||++.........+..+.    ..+.+++|+|+|.+|++++ .++.
T Consensus       122 ~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~  196 (297)
T 2ojh_A          122 P-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE----GRNDGPDYSPDGRWIYFNSSRTGQ  196 (297)
T ss_dssp             C-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS----SCEEEEEECTTSSEEEEEECTTSS
T ss_pred             e-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC----CccccceECCCCCEEEEEecCCCC
Confidence            3 333  3457889999999  44 566789899998533322333333332    3789999999999888766 4777


Q ss_pred             EEEEEcC
Q 040274          217 SGILVPR  223 (359)
Q Consensus       217 ~~i~~~g  223 (359)
                      +.+|...
T Consensus       197 ~~i~~~~  203 (297)
T 2ojh_A          197 MQIWRVR  203 (297)
T ss_dssp             CEEEEEE
T ss_pred             ccEEEEC
Confidence            7777543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=5.4e-14  Score=126.76  Aligned_cols=167  Identities=11%  Similarity=0.073  Sum_probs=118.7

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeE-EEEcCCCCEEEEEeCCC---eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDL-MRVNPFNGVVSLGHSGG---TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~-l~~sp~~~~l~tg~~dg---~v~lwd~~~~~~~~  103 (359)
                      .+++|+|||++|++++.                        .... ++|+|++.+|+++..++   .|.+||+.+++.+.
T Consensus        43 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           43 VDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             EEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred             ceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence            48899999997766544                        2333 99999999998655553   89999999998877


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEe-cCCCe-EEEEEcCCCeee-----Eee--cCCceeEEEcCCC--cEEEE-cCCcEE
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATT-GKECK-IKIWDLRKYEVL-----QTL--TGHAKTLDFSQKG--LLAVG-TGSFAQ  171 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~-~~d~~-i~vwd~~~~~~~-----~~~--~~~v~~~~~s~~g--l~~~~-~d~~i~  171 (359)
                      .+..+ ....+++|+|+|++|+++ ..++. |.+|++.....+     ..+  ...+.+++|+|+|  +++++ .++.|.
T Consensus       123 ~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          123 TIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             EEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence            77554 456899999999855544 55577 999998753322     112  2347899999999  44444 578999


Q ss_pred             EEcCCCCCcc---ccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEEEEEcCCC
Q 040274          172 ILGDFSGSHN---YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSGILVPRSS  225 (359)
Q Consensus       172 v~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~~gs~  225 (359)
                      +||+... ..   ...+...     ..+.+++|+|+|++|++++. ++.+.+|...++
T Consensus       202 v~d~~~~-~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          202 ILETQNP-ENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EEECSST-TSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             EEECCCC-cccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            9996554 33   3333322     35788999999998776654 666777766543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.61  E-value=1.1e-14  Score=145.23  Aligned_cols=168  Identities=11%  Similarity=0.133  Sum_probs=121.1

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTT-----SALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~-----~~~~~~~  105 (359)
                      .+++|||| .+++++..                     .+.+++|||+|+.|+++ .|+.|++||+.+     ++.....
T Consensus        85 ~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~  162 (706)
T 2z3z_A           85 FRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT  162 (706)
T ss_dssp             EEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred             eeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence            88999999 55554433                     57789999999999985 679999999998     7766544


Q ss_pred             ecCCCC--------------eEEEEEecCCCEEEEec---------------------------------CCCeEEEEEc
Q 040274          106 LYHQGP--------------VSALAFHPNGHLMATTG---------------------------------KECKIKIWDL  138 (359)
Q Consensus       106 ~~h~~~--------------v~~l~~~p~g~~l~s~~---------------------------------~d~~i~vwd~  138 (359)
                      ..+...              +.++.|+|||++|++++                                 .+..|++||+
T Consensus       163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence            444333              48999999999999987                                 4578999999


Q ss_pred             CCCeeeEeec-----CCceeEEEcCCC--cEEEEcCC-----cEEEEcCCCCCccccccccccCCCCcceeEEEEcc--C
Q 040274          139 RKYEVLQTLT-----GHAKTLDFSQKG--LLAVGTGS-----FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP--Y  204 (359)
Q Consensus       139 ~~~~~~~~~~-----~~v~~~~~s~~g--l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~  204 (359)
                      .+++......     ..+.+++|+|||  +++++.++     .|.+||+.++.................+.++.|+|  +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred             CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence            9887654431     347899999999  55555554     89999975542222222111110111246789999  9


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 040274          205 EDVLGIGHSMGWSGILV  221 (359)
Q Consensus       205 ~~~l~~g~~dg~~~i~~  221 (359)
                      |++|++++.+|.+.||.
T Consensus       323 g~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             SEEEEEECTTSSCEEEE
T ss_pred             CEEEEEEccCCccEEEE
Confidence            99999998888777664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=9.3e-14  Score=126.31  Aligned_cols=172  Identities=12%  Similarity=0.054  Sum_probs=115.0

Q ss_pred             eEEEECCCCCEEEEec---c------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cc--
Q 040274           52 ILWILPSSGRYMAVAG---R------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTT-SA--  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~---~------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~-~~--  100 (359)
                      ..++|+|||+.++++.   .                        .+..++|+|++++|++++ .++.|.+|++.. +.  
T Consensus        43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence            6799999999444432   1                        567899999999888887 689999999963 22  


Q ss_pred             ceEEeec---------CCCCeEEEEEecCCCEEEEecCCCeEEEEEcC-CCeee--Eee---c-CCceeEEEcCCC--cE
Q 040274          101 LLIKMLY---------HQGPVSALAFHPNGHLMATTGKECKIKIWDLR-KYEVL--QTL---T-GHAKTLDFSQKG--LL  162 (359)
Q Consensus       101 ~~~~~~~---------h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~-~~~~~--~~~---~-~~v~~~~~s~~g--l~  162 (359)
                      .+..+..         +...+.+++|+|+|+++++...++.|.+||+. ++...  ..+   . ..+..++|+|+|  ++
T Consensus       123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence            2333321         11248899999999977777778999999998 45432  222   1 246789999999  34


Q ss_pred             EE-EcCCcEEEEcCCCC-Ccc--ccccccccC--CCCcceeEEEEccCCCEEE-EEeCCCeEEEEEcC
Q 040274          163 AV-GTGSFAQILGDFSG-SHN--YSRYMGNSM--VKGYQIGKVSFRPYEDVLG-IGHSMGWSGILVPR  223 (359)
Q Consensus       163 ~~-~~d~~i~v~d~~~~-~~~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~-~g~~dg~~~i~~~g  223 (359)
                      ++ ..++.|.+|++... +..  ...+.....  .....+..++|+|+|++|+ ++..++.+.+|...
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            43 35689999986531 111  111111110  0113588999999999875 45557777777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.61  E-value=1.2e-14  Score=151.51  Aligned_cols=162  Identities=12%  Similarity=-0.024  Sum_probs=129.5

Q ss_pred             eEEEEC-CCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEE-EEeCCCCcceEEeec
Q 040274           52 ILWILP-SSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVT-MWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~s-pdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~-lwd~~~~~~~~~~~~  107 (359)
                      .+++|| |||++|++++.                      .+.+++|+ +|..|++++.++.+. +||+.++... .+.+
T Consensus       299 ~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~  376 (1045)
T 1k32_A          299 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEE  376 (1045)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred             ceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecC
Confidence            789999 99999887653                      46778899 999999999888898 9999877644 3448


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcC----------CcEEE
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTG----------SFAQI  172 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d----------~~i~v  172 (359)
                      |...+.+++|+|||++|++++.++.|++||+.+++....+   .+.+.+++|||||  +++++.+          +.|++
T Consensus       377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            8889999999999999999999999999999998876655   3457899999999  5555543          38999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ||+..+ . ...+..|.    ..+.+++|+|+|++|++++.++...+|.
T Consensus       457 ~d~~~g-~-~~~l~~~~----~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          457 YDMEGR-K-IFAATTEN----SHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EETTTT-E-EEECSCSS----SBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             EECCCC-c-EEEeeCCC----cccCCceEcCCCCEEEEEecccCCcCcc
Confidence            997554 3 33444443    3688899999999999999877655554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.60  E-value=1.5e-14  Score=144.45  Aligned_cols=159  Identities=9%  Similarity=0.006  Sum_probs=115.9

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~   97 (359)
                      .+++|||||++|++++.                                  .+.+++|||||+.|++++. +.|++||+.
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~  142 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV  142 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred             ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECC
Confidence            68999999999998742                                  1678999999999999886 799999999


Q ss_pred             CCcceEEeecCCCCe------------------EEEEEecCCCEEEEecCCC----------------------------
Q 040274           98 TSALLIKMLYHQGPV------------------SALAFHPNGHLMATTGKEC----------------------------  131 (359)
Q Consensus        98 ~~~~~~~~~~h~~~v------------------~~l~~~p~g~~l~s~~~d~----------------------------  131 (359)
                      ++........+...+                  .+++|+|||++|++++.|+                            
T Consensus       143 ~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  222 (723)
T 1xfd_A          143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG  222 (723)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred             CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence            988766655544433                  7899999999999887543                            


Q ss_pred             ------eEEEEEcCCCeeeEeec---------CCceeEEEcCCC-cE-EEEc----CCcEEEEcCCCCCccccccccccC
Q 040274          132 ------KIKIWDLRKYEVLQTLT---------GHAKTLDFSQKG-LL-AVGT----GSFAQILGDFSGSHNYSRYMGNSM  190 (359)
Q Consensus       132 ------~i~vwd~~~~~~~~~~~---------~~v~~~~~s~~g-l~-~~~~----d~~i~v~d~~~~~~~~~~~~~~~~  190 (359)
                            .|++||+.+++....+.         ..+.+++||||| ++ +.+.    +..|.+||+.++ .....+..+. 
T Consensus       223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~-  300 (723)
T 1xfd_A          223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDES-  300 (723)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEEC-
T ss_pred             CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEecc-
Confidence                  79999999887544442         236789999999 44 4432    257999996554 3333332221 


Q ss_pred             CCCcce----eEEEEccCCCEEEEE--eCCC
Q 040274          191 VKGYQI----GKVSFRPYEDVLGIG--HSMG  215 (359)
Q Consensus       191 ~~~~~v----~~~~~sp~~~~l~~g--~~dg  215 (359)
                        ...+    .+++|+|||+.|+..  ..++
T Consensus       301 --~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          301 --EAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             --SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             --CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence              1122    378999999977754  4566

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=5.5e-14  Score=127.27  Aligned_cols=163  Identities=11%  Similarity=-0.048  Sum_probs=118.3

Q ss_pred             eEEEECCCCCEEEEecc----------------------c--------eeEEEEcCCCCEEEEEeCC------------C
Q 040274           52 ILWILPSSGRYMAVAGR----------------------R--------TDLMRVNPFNGVVSLGHSG------------G   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~--------v~~l~~sp~~~~l~tg~~d------------g   89 (359)
                      ..++|+|||+++++++.                      .        +.+++|+|+|++|++++.+            +
T Consensus        46 ~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  125 (349)
T 1jmx_B           46 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP  125 (349)
T ss_dssp             CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             ceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCC
Confidence            67899999997665432                      1        6789999999999998865            8


Q ss_pred             eEEEEeCCCCcc---eEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC-----------------
Q 040274           90 TVTMWKPTTSAL---LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG-----------------  149 (359)
Q Consensus        90 ~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------------  149 (359)
                      .|.+||+.++..   +..+. +...+.+++|+|+|+ +++++.  .|.+||+.+++.+..+..                 
T Consensus       126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T 1jmx_B          126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  201 (349)
T ss_dssp             EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             eEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence            999999988543   33333 344688999999999 555544  399999988876655421                 


Q ss_pred             ------------------------------------------------------CceeEEEcC-CC-cEEEEcCCcEEEE
Q 040274          150 ------------------------------------------------------HAKTLDFSQ-KG-LLAVGTGSFAQIL  173 (359)
Q Consensus       150 ------------------------------------------------------~v~~~~~s~-~g-l~~~~~d~~i~v~  173 (359)
                                                                            .+.+++|+| +| ++.++ ++.|.+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~  280 (349)
T 1jmx_B          202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKY  280 (349)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEE
T ss_pred             cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEE
Confidence                                                                  124567789 88 55555 8899999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      |+.+. .....+...     ..+.+++|+|+|++|++++.++.+.+|...++
T Consensus       281 d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          281 DLKQR-KLIKAANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             ETTTT-EEEEEEECS-----SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ECccC-eEEEEEcCC-----CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            96554 333333322     14788999999999888888888888876544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.59  E-value=2.2e-14  Score=143.83  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=108.8

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CC-----eEEEEeCCCCcceEEeecCCCC------------------------eEEEEEe
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GG-----TVTMWKPTTSALLIKMLYHQGP------------------------VSALAFH  118 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg-----~v~lwd~~~~~~~~~~~~h~~~------------------------v~~l~~~  118 (359)
                      .+.+++|||||++|++++. |+     .|++||+.+++....+..+...                        |.+++|+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            5889999999999999988 88     8999999998877666554333                        7899999


Q ss_pred             cCCCEEEEecCCCeEEEEEcCCC---eeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCC-
Q 040274          119 PNGHLMATTGKECKIKIWDLRKY---EVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMV-  191 (359)
Q Consensus       119 p~g~~l~s~~~d~~i~vwd~~~~---~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-  191 (359)
                      |||++|++++. +.|++||+.++   ......  ...+.+++||||| .++.+.++.|++||+..+ ........+... 
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g-~~~~~~~~~~~~~  195 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG-RQMQLTADGSTTI  195 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT-EEEECCCCCCSSE
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC-CEEEeccCCccce
Confidence            99999999886 99999999987   433222  4568999999999 666666789999996553 222222211100 


Q ss_pred             -----------CCcceeEEEEccCCCEEEEEeCCC
Q 040274          192 -----------KGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       192 -----------~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                                 ....+.++.|||||++|++++.++
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             eccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence                       000147899999999999987664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=9.2e-13  Score=120.42  Aligned_cols=150  Identities=11%  Similarity=0.088  Sum_probs=101.8

Q ss_pred             eEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc------e-------EEeecCCCCeEEEEEecCCCEEEEec-CCCeEEE
Q 040274           71 DLMRVNPFNGVVSLGH-SGGTVTMWKPTTSAL------L-------IKMLYHQGPVSALAFHPNGHLMATTG-KECKIKI  135 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~------~-------~~~~~h~~~v~~l~~~p~g~~l~s~~-~d~~i~v  135 (359)
                      ++++|+|++++|++++ .++.|.+|++.....      +       .....+...+.+++|+|+|+++++++ .++.|.+
T Consensus       158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence            6699999999766655 588999998875432      1       11223455678999999999887766 6899999


Q ss_pred             EEcCCCee--eEeec------CCceeEEEcCCC--cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc
Q 040274          136 WDLRKYEV--LQTLT------GHAKTLDFSQKG--LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       136 wd~~~~~~--~~~~~------~~v~~~~~s~~g--l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  203 (359)
                      ||+.++..  +..+.      ..+.+++|+|+|  +++++.  ++.|.+|++..............  .+..+.+++|+|
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~sp  315 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFIITP  315 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEEECT
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CCCCCceEEECC
Confidence            99987754  33332      124699999999  445454  47899999742211211111111  123578999999


Q ss_pred             CCCEEEEEe-CCCeEEEEEc
Q 040274          204 YEDVLGIGH-SMGWSGILVP  222 (359)
Q Consensus       204 ~~~~l~~g~-~dg~~~i~~~  222 (359)
                      +|++|++++ .++.+.+|..
T Consensus       316 dg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          316 NGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             TSCEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEE
Confidence            999988887 5676777543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.56  E-value=2.9e-13  Score=131.01  Aligned_cols=171  Identities=11%  Similarity=0.083  Sum_probs=126.0

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcC----CCCEEEEEe-CCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNP----FNGVVSLGH-SGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp----~~~~l~tg~-~dg~v~lwd~~~~~~~  102 (359)
                      ++++|+|||++|++++.                        .+..++|+|    +|+++++++ .+++|.+||..+++++
T Consensus       182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  261 (543)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc
Confidence            77889999999998775                        467899999    999999988 4899999999999988


Q ss_pred             EEeec----------CCC-CeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeE--ee--cCCceeEEEcCCC--cEEE
Q 040274          103 IKMLY----------HQG-PVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQ--TL--TGHAKTLDFSQKG--LLAV  164 (359)
Q Consensus       103 ~~~~~----------h~~-~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~--~~--~~~v~~~~~s~~g--l~~~  164 (359)
                      ..+..          |.. .+.++.++|++.. +++...++.|.+||+.+...+.  .+  ...+.++.|+|+|  ++++
T Consensus       262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va  341 (543)
T 1nir_A          262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA  341 (543)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE
T ss_pred             eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE
Confidence            88764          223 7899999997665 5667789999999998865443  33  3457899999999  4444


Q ss_pred             E-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCEEEEEe-CCCeEEEEEcCC
Q 040274          165 G-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIGH-SMGWSGILVPRS  224 (359)
Q Consensus       165 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~-~dg~~~i~~~gs  224 (359)
                      + .+++|.+||+.++ .....+.....+|......+ ++|+ +.++++++ .++.+.+|...+
T Consensus       342 ~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          342 ANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            4 4789999997654 45444443222122223333 5776 66667765 578888887655

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.55  E-value=3.2e-14  Score=142.25  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=104.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC---CeEEEEEecCCCEEEEecC---------CCeEEEEEcC
Q 040274           72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG---PVSALAFHPNGHLMATTGK---------ECKIKIWDLR  139 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~p~g~~l~s~~~---------d~~i~vwd~~  139 (359)
                      +++|+|++.+++ .+.|+.|++||+.++++...+.+|..   .+.+++|||||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            567888885444 44699999999999987776665543   4899999999999998876         7899999999


Q ss_pred             CCeee--EeecCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCC----CC---------cceeEEEEcc
Q 040274          140 KYEVL--QTLTGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMV----KG---------YQIGKVSFRP  203 (359)
Q Consensus       140 ~~~~~--~~~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~---------~~v~~~~~sp  203 (359)
                      +++.+  ..+...+.+++||||| .++.+.++.|++||+..+........++...    +.         ....+++|||
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            98874  3345678999999999 6666678999999975543211111111100    00         1125899999


Q ss_pred             CCCEEEEEeCC
Q 040274          204 YEDVLGIGHSM  214 (359)
Q Consensus       204 ~~~~l~~g~~d  214 (359)
                      ||++|++++.|
T Consensus       179 DG~~la~~~~d  189 (719)
T 1z68_A          179 NGKFLAYAEFN  189 (719)
T ss_dssp             TSSEEEEEEEE
T ss_pred             CCCEEEEEEEC
Confidence            99999998865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=1.2e-13  Score=137.66  Aligned_cols=141  Identities=11%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             eeEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCcceEEee--cCCCCeEE
Q 040274           70 TDLMRVNPFNGVVSLGH---------------------------------SGGTVTMWKPTTSALLIKML--YHQGPVSA  114 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~---------------------------------~dg~v~lwd~~~~~~~~~~~--~h~~~v~~  114 (359)
                      +.+++|||||++|++++                                 .+..|.+||+.++.......  .|...+.+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            37899999999999987                                 34679999999887554432  46678999


Q ss_pred             EEEecCCCEEEEecCCC-----eEEEEEcCCCeeeEee---c--C---CceeEEEcC--CC--cEEEEcCCcEEEEcCCC
Q 040274          115 LAFHPNGHLMATTGKEC-----KIKIWDLRKYEVLQTL---T--G---HAKTLDFSQ--KG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       115 l~~~p~g~~l~s~~~d~-----~i~vwd~~~~~~~~~~---~--~---~v~~~~~s~--~g--l~~~~~d~~i~v~d~~~  177 (359)
                      ++|+|||++|++++.++     .|++||+.+++....+   .  .   .+.++.|+|  +|  +++++.++.+.||++..
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~  342 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT  342 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence            99999999999887775     8999999998333322   1  1   236789999  99  55555678888887543


Q ss_pred             CCccccccccccCCCCcceeE-EEEccCCCEEEEEeCC
Q 040274          178 GSHNYSRYMGNSMVKGYQIGK-VSFRPYEDVLGIGHSM  214 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~g~~d  214 (359)
                      .......+..+..    .+.+ +.|+|+|+.|++++.+
T Consensus       343 ~~~~~~~l~~~~~----~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          343 TGRLIRQVTKGEW----EVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             TSCEEEECCCSSS----CEEEEEEECTTSSEEEEEESS
T ss_pred             CCCEEEecCCCCe----EEEeeeEEcCCCCEEEEEecC
Confidence            3334444444422    5666 7999999988766554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=4.7e-14  Score=141.02  Aligned_cols=152  Identities=14%  Similarity=0.103  Sum_probs=112.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------c----eeEEEEcCCCCEEEEEeC---------CCeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------R----TDLMRVNPFNGVVSLGHS---------GGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~----v~~l~~sp~~~~l~tg~~---------dg~v~lwd~~   97 (359)
                      .++.|+|||++++++..                     .    +.+++|||||++|++++.         ++.|++||+.
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            78899999987766543                     2    889999999999998876         7899999999


Q ss_pred             CCcce--EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cC--------------------CceeE
Q 040274           98 TSALL--IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TG--------------------HAKTL  154 (359)
Q Consensus        98 ~~~~~--~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~--------------------~v~~~  154 (359)
                      +++.+  ..+   ...+.+++|||||+.|+++. |+.|++||+.++...... .+                    ...++
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88763  222   35688999999999999885 789999999887765432 11                    11489


Q ss_pred             EEcCCC--cEEEEcCC----------------------------------cEEEEcCCCCCccc--------cccccccC
Q 040274          155 DFSQKG--LLAVGTGS----------------------------------FAQILGDFSGSHNY--------SRYMGNSM  190 (359)
Q Consensus       155 ~~s~~g--l~~~~~d~----------------------------------~i~v~d~~~~~~~~--------~~~~~~~~  190 (359)
                      +|||||  +++++.+.                                  .|.+||+..+ ...        ..+..|  
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~--  251 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVPVPAMIASS--  251 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECCCCHHHHTS--
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEccCCccCCCC--
Confidence            999999  55555442                                  7889996543 221        112223  


Q ss_pred             CCCcceeEEEEccCCCEEEEEe
Q 040274          191 VKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       191 ~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                        ...+.+++|+||+.++++..
T Consensus       252 --~~~~~~~~~SpD~~~~~~~~  271 (719)
T 1z68_A          252 --DYYFSWLTWVTDERVCLQWL  271 (719)
T ss_dssp             --CEEEEEEEESSSSEEEEEEE
T ss_pred             --cceEEEeEEeCCCeEEEEEe
Confidence              33689999999988777744

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.52  E-value=1.3e-13  Score=134.57  Aligned_cols=139  Identities=12%  Similarity=0.025  Sum_probs=110.1

Q ss_pred             eEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC--eEEEEEcCCCeee
Q 040274           71 DLMRVNPFNGVVSLGHSG----GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC--KIKIWDLRKYEVL  144 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~d----g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~--~i~vwd~~~~~~~  144 (359)
                      .+++|||||++|++++.+    +.|++||+.+++.. .+..|.+.+.+++|+|||+.|++++.++  .|++||+.+++..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            688999999999988877    78999999988754 6678889999999999999999888888  8999999988776


Q ss_pred             EeecC---CceeEE--------EcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          145 QTLTG---HAKTLD--------FSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       145 ~~~~~---~v~~~~--------~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                       .+.+   .+.+++        |+|||  +++++.++.+.+|++  + ....   ..    ...|.+++|+ ++.+++++
T Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~---~~----~~~v~~~~~s-dg~~l~~~  299 (582)
T 3o4h_A          232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVE---AP----QGNHGRVVLW-RGKLVTSH  299 (582)
T ss_dssp             -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEEC---CC----SSEEEEEEEE-TTEEEEEE
T ss_pred             -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceec---cC----CCceEEEEec-CCEEEEEE
Confidence             4432   355566        99999  666778999999997  3 3222   12    2368999999 99999888


Q ss_pred             eCCCe-EEEEEc
Q 040274          212 HSMGW-SGILVP  222 (359)
Q Consensus       212 ~~dg~-~~i~~~  222 (359)
                      +.+.. ..+|..
T Consensus       300 s~~~~p~~l~~~  311 (582)
T 3o4h_A          300 TSLSTPPRIVSL  311 (582)
T ss_dssp             EETTEEEEEEEE
T ss_pred             cCCCCCCeEEEE
Confidence            87765 344443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.51  E-value=4e-13  Score=131.06  Aligned_cols=163  Identities=11%  Similarity=0.003  Sum_probs=111.3

Q ss_pred             ceEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeC---CCeEEEEeCCC--Ccc
Q 040274           51 HILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHS---GGTVTMWKPTT--SAL  101 (359)
Q Consensus        51 ~~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~---dg~v~lwd~~~--~~~  101 (359)
                      -++++|+|||++||+++.                        .+.+++|+|+ .++++++.   +....+|.+..  ...
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            399999999999998653                        5788999999 77777765   45556655433  222


Q ss_pred             eEEeecCCCCeEEEEEecCCC--EEEEecCCCeEEEEEcCCCeeeEeecCCceeEEEcCCC--cEEEEcC----CcEEEE
Q 040274          102 LIKMLYHQGPVSALAFHPNGH--LMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG--LLAVGTG----SFAQIL  173 (359)
Q Consensus       102 ~~~~~~h~~~v~~l~~~p~g~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~g--l~~~~~d----~~i~v~  173 (359)
                      ...+..+ ..+...+|+|+|.  ++++++.| .+.+||+.+++.......+..+++|||||  +++++.+    +.|++|
T Consensus       103 ~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          103 EQRLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             CEECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             cccccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence            2233322 2345678888875  34444444 45599999887655554444899999999  5545655    679999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC--eEEEEEc
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG--WSGILVP  222 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg--~~~i~~~  222 (359)
                      |+..+ . ...+..+..    .+.+++|+|||++|+++..+|  .+.+|..
T Consensus       181 d~~~g-~-~~~l~~~~~----~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          181 NLSSG-G-LRVFDSGEG----SFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             ETTTC-C-CEEECCSSC----EEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             cCCCC-C-ceEeecCCC----ccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            96554 2 234444433    689999999999999888888  4555543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.50  E-value=2e-13  Score=142.20  Aligned_cols=156  Identities=10%  Similarity=0.031  Sum_probs=123.6

Q ss_pred             eEEEECCCCCEEEEecc--------------------------------ceeEEEEc-CCCCEEEEEeCCCeEEEEeCCC
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------------RTDLMRVN-PFNGVVSLGHSGGTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------------~v~~l~~s-p~~~~l~tg~~dg~v~lwd~~~   98 (359)
                      ..++|||||++|+++..                                .+.+++|+ |+|..|++++ ++.|.+|++.+
T Consensus       248 ~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          248 YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence            57799999998877533                                27899999 9999998887 78999999987


Q ss_pred             CcceEEeecCCC-CeEEEEEecCCCEEEEecCCCeEE-EEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEE
Q 040274           99 SALLIKMLYHQG-PVSALAFHPNGHLMATTGKECKIK-IWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQI  172 (359)
Q Consensus        99 ~~~~~~~~~h~~-~v~~l~~~p~g~~l~s~~~d~~i~-vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v  172 (359)
                      +... .+..|.. .+.+++|+ +|..|++++.++.+. +||+.++......  ...+.+++|||+|  +++++.++.|++
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          327 TYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             SBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            7643 4567777 89999999 999999998888899 9999877543322  3457899999999  667778899999


Q ss_pred             EcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          173 LGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       173 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ||+.++ ........|..    .+.+++|+|||++|++++.++
T Consensus       405 ~d~~tg-~~~~~~~~~~~----~v~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          405 VDLETG-KPTVIERSREA----MITDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             EETTTC-CEEEEEECSSS----CCCCEEECTTSCEEEEEEEEC
T ss_pred             EECCCC-ceEEeccCCCC----CccceEECCCCCeEEEEecCc
Confidence            997554 33333334433    689999999999999887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.48  E-value=8.6e-12  Score=113.91  Aligned_cols=168  Identities=11%  Similarity=0.195  Sum_probs=108.9

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTS   99 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~   99 (359)
                      ..++|+|||++|++++.                               ....+++  ++.+|++++ .++.|.+|++.+.
T Consensus        53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~  130 (361)
T 3scy_A           53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD  130 (361)
T ss_dssp             CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred             ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence            66899999998876543                               2334444  666666666 5789999999754


Q ss_pred             cceEEe---ecC-----------CCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCe-------e-------eEee--c
Q 040274          100 ALLIKM---LYH-----------QGPVSALAFHPNGHLMATTG-KECKIKIWDLRKYE-------V-------LQTL--T  148 (359)
Q Consensus       100 ~~~~~~---~~h-----------~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~-------~-------~~~~--~  148 (359)
                      ..+..+   ..+           ...+++++|+|+|++|++++ .++.|.+|++....       .       ....  .
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence            332211   111           22358899999999665554 58899999987533       1       1112  2


Q ss_pred             CCceeEEEcCCC--cEEEE-cCCcEEEEcCCCCCcc--ccccccccCCCCcceeEEEEccCCCEEEEEeCC--CeEEEEE
Q 040274          149 GHAKTLDFSQKG--LLAVG-TGSFAQILGDFSGSHN--YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM--GWSGILV  221 (359)
Q Consensus       149 ~~v~~~~~s~~g--l~~~~-~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d--g~~~i~~  221 (359)
                      ..+..++|+|+|  +++++ .++.|.+||+..+ ..  ...+..... +...+.+++|+|||++|+++..+  +.+.+|.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~-~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTV-NAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSS-CCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCC-CCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            346889999999  44455 4789999996533 21  111222111 22346899999999998776654  7777776


Q ss_pred             cC
Q 040274          222 PR  223 (359)
Q Consensus       222 ~g  223 (359)
                      ..
T Consensus       289 ~~  290 (361)
T 3scy_A          289 VD  290 (361)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.47  E-value=2.2e-12  Score=118.79  Aligned_cols=156  Identities=11%  Similarity=0.012  Sum_probs=111.6

Q ss_pred             EEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           54 WILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        54 l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+|||||++|++++.                          .+.++.|+|++..|++++.++.|++||+.+++....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            789999999987664                          233678999999999999999999999999987766666


Q ss_pred             CCCCeEEEE--EecCCCEEEEe----------------------cCCCeEEEEEcCCCeeeEee--cCCceeEEEcC-CC
Q 040274          108 HQGPVSALA--FHPNGHLMATT----------------------GKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ-KG  160 (359)
Q Consensus       108 h~~~v~~l~--~~p~g~~l~s~----------------------~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~-~g  160 (359)
                      +...+....  ++|++.+++..                      +.+..|++||+.+++.....  ...+..+.||| +|
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg  200 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD  200 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCC
Confidence            666554444  48999988742                      24578999999988754433  45578999999 98


Q ss_pred             --cEEEEcC------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          161 --LLAVGTG------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       161 --l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                        ++.++.+      ..|.++|+...  ....+..+.  .+..+..+.|+|||+.|+..+.
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          201 STVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHA--EGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCC--TTEEEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCC--CCcccccceECCCCCEEEEEec
Confidence              4444432      37888875332  222232221  1125788999999998765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.46  E-value=1.4e-12  Score=131.05  Aligned_cols=172  Identities=12%  Similarity=0.019  Sum_probs=117.1

Q ss_pred             eEEEECCCCCEEEEecc------------------------ce--eEEEEcCCCCEEEEEeCC---------CeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RT--DLMRVNPFNGVVSLGHSG---------GTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v--~~l~~sp~~~~l~tg~~d---------g~v~lwd~   96 (359)
                      +++.|+|||++|+++..                        .+  ..+.|||||++|++++.+         +.+.+||+
T Consensus        20 ~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             CCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            89999999999988732                        12  337899999999998876         56779999


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-cCC--------------------ceeEE
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-TGH--------------------AKTLD  155 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~--------------------v~~~~  155 (359)
                      .+++.. .+..|.+.+..++|||||+.||.+ .|+.|++||+.++...+.. .+.                    ...+.
T Consensus       100 ~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          100 NKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             TTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence            998754 466778889999999999999888 5789999999887654322 111                    13589


Q ss_pred             EcCCC--cEEEEcC-C-----------------------------------cEEEEcCCC---CCc-cccccccc---cC
Q 040274          156 FSQKG--LLAVGTG-S-----------------------------------FAQILGDFS---GSH-NYSRYMGN---SM  190 (359)
Q Consensus       156 ~s~~g--l~~~~~d-~-----------------------------------~i~v~d~~~---~~~-~~~~~~~~---~~  190 (359)
                      |||||  ++.++.| +                                   .|.+||+..   +.. ....+...   ..
T Consensus       178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            99999  4444322 1                                   477788654   311 11111110   00


Q ss_pred             CCCcceeEEEEccCCCEEEEEeCCC----eEEEEEcCCCC
Q 040274          191 VKGYQIGKVSFRPYEDVLGIGHSMG----WSGILVPRSSE  226 (359)
Q Consensus       191 ~~~~~v~~~~~sp~~~~l~~g~~dg----~~~i~~~gs~~  226 (359)
                       +...+.+++|+|||++++.....+    .+.+|...++.
T Consensus       258 -~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          258 -GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             -SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             -CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence             223689999999999766554322    45555544443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.46  E-value=3.7e-12  Score=116.90  Aligned_cols=172  Identities=9%  Similarity=0.015  Sum_probs=113.8

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCE--EEEEe-------------CCCeEE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGV--VSLGH-------------SGGTVT   92 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~--l~tg~-------------~dg~v~   92 (359)
                      ..++|+|||++|++++.                        .+.+++|+|+|++  +++++             .+|.+.
T Consensus        43 ~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             cEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            67899999998876543                        1234667888884  44553             689999


Q ss_pred             EEeCC-CCcceEEee----cCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcC-CCeee--Eeec-----CCceeEEEcC
Q 040274           93 MWKPT-TSALLIKML----YHQGPVSALAFHPNGHLMATTG-KECKIKIWDLR-KYEVL--QTLT-----GHAKTLDFSQ  158 (359)
Q Consensus        93 lwd~~-~~~~~~~~~----~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~-~~~~~--~~~~-----~~v~~~~~s~  158 (359)
                      +|++. .+.....+.    .+...+.+++|+|+|++|++++ .++.|.+||+. +++..  ..+.     ..+..++|+|
T Consensus       123 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp  202 (365)
T 1jof_A          123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             EEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence            99997 455443333    2456799999999999888765 46899999998 67542  3332     2478899999


Q ss_pred             CC--cEEEEc-CCcEEEEcCCC-CCccc---cccccccC-C--CCc------ceeEEE-EccCCCEEEEEeCCC------
Q 040274          159 KG--LLAVGT-GSFAQILGDFS-GSHNY---SRYMGNSM-V--KGY------QIGKVS-FRPYEDVLGIGHSMG------  215 (359)
Q Consensus       159 ~g--l~~~~~-d~~i~v~d~~~-~~~~~---~~~~~~~~-~--~~~------~v~~~~-~sp~~~~l~~g~~dg------  215 (359)
                      +|  +++++. ++.|.+|++.. .+...   ..+..... .  +..      .+..++ |+|||++|++++.+.      
T Consensus       203 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~  282 (365)
T 1jof_A          203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCC
Confidence            99  444453 68999987532 22211   11111100 0  011      478999 999999988776432      


Q ss_pred             eEEEEEcC
Q 040274          216 WSGILVPR  223 (359)
Q Consensus       216 ~~~i~~~g  223 (359)
                      .+.+|...
T Consensus       283 ~i~v~~~~  290 (365)
T 1jof_A          283 YIAGFKLR  290 (365)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            67777653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.46  E-value=2.8e-12  Score=117.71  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=102.8

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCC-CCcce--EEee--cCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcC--
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPT-TSALL--IKML--YHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLR--  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~-~~~~~--~~~~--~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~--  139 (359)
                      .+++++|+|+|++|++++. ++.|.+|++. +++..  ..+.  .|...+..++|+|+|++|++++. ++.|.+|++.  
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence            4678999999998887764 6799999998 67543  2333  24567899999999999887764 7899999875  


Q ss_pred             CCeee------Eeec----C---------CceeEE-EcCCC--cEEEEc-CC-----cEEEEcCCCCCcccc---ccccc
Q 040274          140 KYEVL------QTLT----G---------HAKTLD-FSQKG--LLAVGT-GS-----FAQILGDFSGSHNYS---RYMGN  188 (359)
Q Consensus       140 ~~~~~------~~~~----~---------~v~~~~-~s~~g--l~~~~~-d~-----~i~v~d~~~~~~~~~---~~~~~  188 (359)
                      +++..      ..++    +         .+..++ |+|+|  +++++. ++     .|.+|++...+....   ....+
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~  305 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence            45532      1222    1         367899 99999  444443 23     899999753323221   11112


Q ss_pred             cCCCCcceeEEEEcc---CCCEEEEEeCC-CeEEEEEc
Q 040274          189 SMVKGYQIGKVSFRP---YEDVLGIGHSM-GWSGILVP  222 (359)
Q Consensus       189 ~~~~~~~v~~~~~sp---~~~~l~~g~~d-g~~~i~~~  222 (359)
                          ...+..++|+|   +|++|++++.+ +.+.+|..
T Consensus       306 ----~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          306 ----TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ----SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ----CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence                22467789999   89999988764 66666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.45  E-value=9.2e-13  Score=132.31  Aligned_cols=145  Identities=10%  Similarity=0.067  Sum_probs=106.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC-----eEEEEEecCCCEEEEecCC---------CeEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP-----VSALAFHPNGHLMATTGKE---------CKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~-----v~~l~~~p~g~~l~s~~~d---------~~i~  134 (359)
                      ...++.|+|++.+++++  ||.|.+||+.++++...+.+|...     ..+++|||||++|++++.+         +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35678999999888886  899999999999987777777643     2448899999999998876         5678


Q ss_pred             EEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCC-----C--------CcceeE
Q 040274          135 IWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMV-----K--------GYQIGK  198 (359)
Q Consensus       135 vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~--------~~~v~~  198 (359)
                      +||+.++++....  .+.+..++||||| .++.+.++.|++||+..+.....+..++...     .        .....+
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence            9999998865422  4568999999999 6677788999999975543221111121100     0        012245


Q ss_pred             EEEccCCCEEEEEeCCC
Q 040274          199 VSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       199 ~~~sp~~~~l~~g~~dg  215 (359)
                      +.|||||+.|+.++.|.
T Consensus       176 ~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             EEECTTSSEEEEEEEEC
T ss_pred             eEECCCCCEEEEEEEcc
Confidence            89999999999887543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.44  E-value=2.3e-12  Score=116.44  Aligned_cols=148  Identities=7%  Similarity=-0.034  Sum_probs=107.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC-CCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEeec-
Q 040274           72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-GPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTLT-  148 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~~-  148 (359)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+. ..+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+. 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999998887776543 257899999999865 455678999999999998877663 


Q ss_pred             CC--------ceeEEEcCCC--cEEEEc------------CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          149 GH--------AKTLDFSQKG--LLAVGT------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       149 ~~--------v~~~~~s~~g--l~~~~~------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      ..        +.+++|+|+|  +++++.            ++.|.+||+.++ ........... + ..+.+++|+|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~-~-~~~~~~~~s~dg~  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAKPVRTFPM-P-RQVYLMRAADDGS  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-GGBCCSEEEEC-C-SSCCCEEECTTSC
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc-cccceeeeccC-C-CcccceeECCCCc
Confidence            22        6899999999  555554            389999997543 22221111111 1 2588999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCC
Q 040274          207 VLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~gs~  225 (359)
                       +++++.+  +.+|...++
T Consensus       161 -l~~~~~~--i~~~d~~~~  176 (349)
T 1jmx_B          161 -LYVAGPD--IYKMDVKTG  176 (349)
T ss_dssp             -EEEESSS--EEEECTTTC
T ss_pred             -EEEccCc--EEEEeCCCC
Confidence             5555433  666655443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=6e-12  Score=115.63  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=118.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~  100 (359)
                      +.|++++.+.++++|+.                               .|+.|+|  ++.+|+++ .++.|.+||+.+..
T Consensus        41 nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~  117 (388)
T 1xip_A           41 QNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNALYSLDLEELS  117 (388)
T ss_dssp             BCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEEEEEESSSTT
T ss_pred             cEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcEEEEEchhhh
Confidence            67888888888887774                               5778889  88999999 88999999998876


Q ss_pred             ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 040274          101 LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSH  180 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~  180 (359)
                      .......|...+.++.+.+.  .+++++.||.|.+||+..+.... +...|+|++|||+|++.+..||.+++|+.... .
T Consensus       118 ~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~-~  193 (388)
T 1xip_A          118 EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG-E  193 (388)
T ss_dssp             CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSEEEEEETTSCEEEEEEETT-E
T ss_pred             ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCceEEEEcCCcEEEEcCCCc-c
Confidence            66667778888988877654  38889999999999999877643 55679999999999888999999999985433 2


Q ss_pred             c--cccc------ccccCCCCcceeEEEEccCCCEEEEE
Q 040274          181 N--YSRY------MGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       181 ~--~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      .  ...+      ..+.. +...|.++.|.+++.+|++-
T Consensus       194 ~~~k~~I~~Pp~~~~~~~-~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          194 MEKQFEFSLPSELEELPV-EEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEEECCCHHHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred             ccccceecCCcccccccC-CCeeEEEEEEecCCeEEEEE
Confidence            1  2222      11111 23489999999999998863

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.40  E-value=6.3e-12  Score=112.89  Aligned_cols=138  Identities=12%  Similarity=0.020  Sum_probs=104.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCC--CeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEeec--C-----
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTLT--G-----  149 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~~--~-----  149 (359)
                      .+|++++.++.|.+||+.+++.+..+.....  .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.  .     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988877763322  47899999999765 566678999999999998877663  2     


Q ss_pred             -CceeEEEcCCC--cEEEE------------cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          150 -HAKTLDFSQKG--LLAVG------------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       150 -~v~~~~~s~~g--l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                       .+.+++|+|+|  +++++            .++.|.+||+... .....+...     ..+.+++|+|+|++|+++  +
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEAP-----RQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEECC-----SSCCCEEECTTSSCEEEE--S
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEEEEeCC-----CCcceeEECCCCCEEEEe--C
Confidence             67899999999  44443            4699999996543 333333322     257889999999988888  5


Q ss_pred             CeEEEEEcCCC
Q 040274          215 GWSGILVPRSS  225 (359)
Q Consensus       215 g~~~i~~~gs~  225 (359)
                      +.+.+|...++
T Consensus       154 ~~i~~~d~~~~  164 (337)
T 1pby_B          154 RDLHVMDPEAG  164 (337)
T ss_dssp             SSEEEEETTTT
T ss_pred             CeEEEEECCCC
Confidence            67777766543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=1.8e-10  Score=101.59  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=107.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+++++|++.++++...++.|.+||.. +..+..+.  .+...+.+++++|+|+++++.+.++.|.+||.. +..+..
T Consensus       122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~  199 (286)
T 1q7f_A          122 HPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ  199 (286)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEE
Confidence            47889999999988888888999999965 55555553  345578999999999988888889999999974 555666


Q ss_pred             e--c---CCceeEEEcCCC-cEEEE-cCC-cEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          147 L--T---GHAKTLDFSQKG-LLAVG-TGS-FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       147 ~--~---~~v~~~~~s~~g-l~~~~-~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      +  .   ..+..++++++| ++++. .++ .|.+||. .+ .....+..+.  ....+.+++|+|+|.++++ +.++.+.
T Consensus       200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g-~~~~~~~~~~--~~~~~~~i~~~~~g~l~vs-~~~~~v~  274 (286)
T 1q7f_A          200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG-QLISALESKV--KHAQCFDVALMDDGSVVLA-SKDYRLY  274 (286)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS-CEEEEEEESS--CCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred             EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC-CEEEEEcccC--CCCcceeEEECCCCcEEEE-CCCCeEE
Confidence            6  2   347899999999 55554 454 8999994 33 3444444332  2224789999999976665 5577666


Q ss_pred             EEEc
Q 040274          219 ILVP  222 (359)
Q Consensus       219 i~~~  222 (359)
                      +|..
T Consensus       275 v~~~  278 (286)
T 1q7f_A          275 IYRY  278 (286)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.36  E-value=4.4e-11  Score=108.37  Aligned_cols=154  Identities=10%  Similarity=0.068  Sum_probs=105.8

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCC-----------------
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSG-----------------   88 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~d-----------------   88 (359)
                      .++.|||||++|++++.                          .+.+++|+|+|+.|++++.+                 
T Consensus        62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            67899999999987542                          25789999999988887642                 


Q ss_pred             ----------CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC---------eEEEEEcCCCeeeEeecC
Q 040274           89 ----------GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC---------KIKIWDLRKYEVLQTLTG  149 (359)
Q Consensus        89 ----------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~---------~i~vwd~~~~~~~~~~~~  149 (359)
                                ..|.+||+.+++.+..+.. . .+..++|+|+| ++++++.+.         .|+++|  +++.......
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~  216 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK  216 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC
Confidence                      5799999998876455544 3 78899999999 777775542         355555  5554322222


Q ss_pred             CceeEEEcCCC--cEEEEcC--------CcEEEEcCCCCCccccccccccCCCCcceeE-EEEccCCCEEEEEeCCCeEE
Q 040274          150 HAKTLDFSQKG--LLAVGTG--------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGK-VSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       150 ~v~~~~~s~~g--l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~g~~dg~~~  218 (359)
                       .....++|+|  ++.++.+        ..|.+||  . +........+.    ..+.+ +.|+ ++ ++++++.++...
T Consensus       217 -~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~----~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          217 -VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVD----RGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             -ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCC----SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             -cceeeECCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCC----cccCCccEEc-Cc-EEEEEecCCcEE
Confidence             3333449999  5555533        3688887  2 23332333332    26776 8999 88 889999999888


Q ss_pred             EE
Q 040274          219 IL  220 (359)
Q Consensus       219 i~  220 (359)
                      ||
T Consensus       287 l~  288 (347)
T 2gop_A          287 LY  288 (347)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=7.2e-11  Score=106.70  Aligned_cols=167  Identities=11%  Similarity=0.068  Sum_probs=119.5

Q ss_pred             eEEEECCCCCEEEEecc---------------------------------ceeEEEEcC-CCCEEEEEe-CCCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------------RTDLMRVNP-FNGVVSLGH-SGGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------------~v~~l~~sp-~~~~l~tg~-~dg~v~lwd~   96 (359)
                      ..++++|+|+++++...                                 ....|+++| ++.++++.+ .++.|.+|+ 
T Consensus        94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            67888888887766543                                 256799999 788888876 689999999 


Q ss_pred             CCCcceEEeecC----------CCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC
Q 040274           97 TTSALLIKMLYH----------QGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG  160 (359)
Q Consensus        97 ~~~~~~~~~~~h----------~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g  160 (359)
                      .++..+..+...          .....+++++|+ +.++++...++.|.+||..+++.+..+.     ..+.+++|+| |
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            456666666422          234789999998 7778888889999999999888888772     3468899999 5


Q ss_pred             -cEEEE--------cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          161 -LLAVG--------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       161 -l~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                       ++...        .+..|.+||...+ .....+..... +...+.+++|+|+|.++++...++.+.+|..
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~-~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRK-HFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSS-CCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCC-ccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence             22222        2358999996554 44444421111 2336899999999977777777776666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.34  E-value=3.6e-12  Score=117.43  Aligned_cols=159  Identities=8%  Similarity=-0.022  Sum_probs=108.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------c-eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------R-TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~-v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|||||++|++...                         . ..++.|+|+|+.|++++.++.|++||+.+++....+
T Consensus        39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~  118 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY  118 (396)
T ss_dssp             TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence            56789999999887532                         2 233789999999999999999999999988766555


Q ss_pred             ecCCCCeEE-------------------EEEecCCCEEEEe-----cCCCeEEEEEcCCCeeeEee--cCCceeEEEcC-
Q 040274          106 LYHQGPVSA-------------------LAFHPNGHLMATT-----GKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ-  158 (359)
Q Consensus       106 ~~h~~~v~~-------------------l~~~p~g~~l~s~-----~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~-  158 (359)
                      ..+.+....                   +.|+|++..++.+     ..+..|++||+.+++.....  ...+..+.|+| 
T Consensus       119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~  198 (396)
T 3c5m_A          119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPF  198 (396)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCC
Confidence            544442222                   3457777766554     35678999999988764444  44578999999 


Q ss_pred             CC--cEEEEcC------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          159 KG--LLAVGTG------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       159 ~g--l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      +|  ++.++.+      ..|.+||+... .. ..+..+.  ....+..+.|+|+|++|+.++.+
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l~~~~--~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          199 DDSTVGFCHEGPHDLVDARMWLVNEDGS-NV-RKIKEHA--EGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             EEEEEEEEECSCSSSCSCCCEEEETTSC-CC-EESSCCC--TTEEEEEEEECTTSSCEEEEEEE
T ss_pred             CCCEEEEEecCCCCCCCceEEEEECCCC-ce-eEeeccC--CCccccceEECCCCCEEEEEecC
Confidence            67  4444433      36888885432 22 2222221  12358889999999988776543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.33  E-value=2.2e-10  Score=101.60  Aligned_cols=158  Identities=18%  Similarity=0.202  Sum_probs=113.3

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEE----e-------------C
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLG----H-------------S   87 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg----~-------------~   87 (359)
                      .+++++|+|+++++...                           .++.++++|+|.++++.    +             .
T Consensus        72 ~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~  151 (296)
T 3e5z_A           72 NGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP  151 (296)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred             ceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence            78899999998776532                           24569999999988873    2             1


Q ss_pred             CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC-CCee---eEee---cCCceeEEEcCCC
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR-KYEV---LQTL---TGHAKTLDFSQKG  160 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~-~~~~---~~~~---~~~v~~~~~s~~g  160 (359)
                      .+.|..++.. +. +..+..+....++++|+|+|++|++.+.++.|.+||+. ++..   ...+   .+.+.+++++++|
T Consensus       152 ~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          152 GRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             SCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             CcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            3466666665 43 44455667778999999999998777888999999997 4443   2232   3346789999999


Q ss_pred             -cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEE-ccCCCEEEEEeCCCeEEE
Q 040274          161 -LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF-RPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       161 -l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~g~~dg~~~i  219 (359)
                       +++++ ++.|.+||.. + .....+..+    .. +++++| +|+++.|++++.++..++
T Consensus       230 ~l~v~~-~~~v~~~~~~-g-~~~~~~~~~----~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          230 LIWASA-GDGVHVLTPD-G-DELGRVLTP----QT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             CEEEEE-TTEEEEECTT-S-CEEEEEECS----SC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             CEEEEc-CCeEEEECCC-C-CEEEEEECC----CC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence             66666 8899999953 3 344444433    22 888999 589999988887764433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=1.1e-10  Score=116.67  Aligned_cols=167  Identities=7%  Similarity=-0.103  Sum_probs=116.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCe--------------
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGT--------------   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~--------------   90 (359)
                      .+++|||||++|+++..                           .+.+++|+|||+.|++++.++.              
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            57899999999997543                           3567999999999999988766              


Q ss_pred             --EEEEeCCCCcce--EEee--cCCCCeEEEEEecCCCEEEEecC-----CCeEEEEEcCC------Ce-eeEeec---C
Q 040274           91 --VTMWKPTTSALL--IKML--YHQGPVSALAFHPNGHLMATTGK-----ECKIKIWDLRK------YE-VLQTLT---G  149 (359)
Q Consensus        91 --v~lwd~~~~~~~--~~~~--~h~~~v~~l~~~p~g~~l~s~~~-----d~~i~vwd~~~------~~-~~~~~~---~  149 (359)
                        |++|++.++...  ..+.  .|...+.++.|+|||++|+.++.     +..|++||+.+      +. ....+.   .
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~  287 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE  287 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence              999999887632  2223  24566889999999999887664     56899999986      43 234442   2


Q ss_pred             CceeEEEcCCC--cEEEEcC----CcEEEEcCCCCCc-cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          150 HAKTLDFSQKG--LLAVGTG----SFAQILGDFSGSH-NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       150 ~v~~~~~s~~g--l~~~~~d----~~i~v~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+. ..|+|+|  ++..+..    ..|.+||+..... ....+..+.  ....+.++.|++++.+++++..++...|++
T Consensus       288 ~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          288 GEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             SCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             cEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--CCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence            233 3588888  5544443    3699999655421 123333331  112588899998888888888888766654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.30  E-value=6.3e-10  Score=97.99  Aligned_cols=165  Identities=9%  Similarity=0.094  Sum_probs=116.6

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEE-cCCCCEEEEEeC-CCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRV-NPFNGVVSLGHS-GGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~-sp~~~~l~tg~~-dg~v~lwd~~~~~~  101 (359)
                      .+++++++|+++++...                            .+.++++ .+++.++++... ++.|.+|| .++..
T Consensus        33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~  111 (286)
T 1q7f_A           33 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQF  111 (286)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCE
T ss_pred             ceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcE
Confidence            66777777776665432                            3567888 466766666543 88999999 45666


Q ss_pred             eEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC-cEEE-EcCCcEEEE
Q 040274          102 LIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG-LLAV-GTGSFAQIL  173 (359)
Q Consensus       102 ~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g-l~~~-~~d~~i~v~  173 (359)
                      +..+. .+...+.+++++|+|+++++...++.|.+||.. +..+..+.     ..+.+++++++| ++++ ..++.|.+|
T Consensus       112 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence            66654 344578999999999988888888999999964 55555552     247899999999 4444 457899999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC-eEEEEEc
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG-WSGILVP  222 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg-~~~i~~~  222 (359)
                      |. .+ .....+..+.  ....+..++++|+|.++++...++ .+.+|.+
T Consensus       191 ~~-~g-~~~~~~~~~g--~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          191 NY-EG-QYLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             ET-TC-CEEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cC-CC-CEEEEEccCC--ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            95 33 2333332221  113588999999999888887775 8888864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.29  E-value=3.9e-10  Score=98.28  Aligned_cols=165  Identities=8%  Similarity=-0.055  Sum_probs=116.6

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      .+++++++|+.+++...                      .+.+++++|+|.++++...++.|.+|+..+.........+.
T Consensus        70 ~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           70 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             ceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            78889999886666532                      57789999999888777778999999876554333222333


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG-LLAVG-TGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~~~  184 (359)
                      ..+.+++++|+|+++++...++.|.+||...........   ..+.+++++++| ++.+. .++.|.+||.... ... .
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~-~  227 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TST-V  227 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCE-E
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cce-e
Confidence            467899999999988887788999999988765433321   457899999999 55444 4679999995432 221 1


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ....   ....+.+++++|+|.++++...++.+.++.
T Consensus       228 ~~~~---~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          228 LPFT---GLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CCCC---SCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eccC---CCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            1111   113589999999998777777777665554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.26  E-value=3.3e-10  Score=102.04  Aligned_cols=149  Identities=11%  Similarity=0.071  Sum_probs=107.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC----CeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE----CKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d----~~i~vwd~~~~~~~  144 (359)
                      .+.+++|+|++.+++++..++.|.+||+.+++....+..+...+.+++|+|+|++++++..+    +.|.+||..++...
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            56889999999988888889999999999887655444567789999999999988887766    68999999877654


Q ss_pred             Eee-----cCCceeEEEcCCC-cEEEEcC-------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          145 QTL-----TGHAKTLDFSQKG-LLAVGTG-------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       145 ~~~-----~~~v~~~~~s~~g-l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ..+     ...+.+++++|+| ++.++..       +.|..||.... . ...+....    ..+..++|+|+|++|+++
T Consensus       126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~----~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          126 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-T-VTPIIQNI----SVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-C-EEEEEEEE----SSEEEEEECTTSSEEEEE
T ss_pred             EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-E-EEEeecCC----CcccceEECCCCCEEEEE
Confidence            232     1347899999999 5555542       46677764322 2 22222221    147889999999866544


Q ss_pred             -eCCCeEEEEEcC
Q 040274          212 -HSMGWSGILVPR  223 (359)
Q Consensus       212 -~~dg~~~i~~~g  223 (359)
                       +.++.+.+|...
T Consensus       200 ~~~~~~i~~~d~~  212 (333)
T 2dg1_A          200 ETTANRLHRIALE  212 (333)
T ss_dssp             EGGGTEEEEEEEC
T ss_pred             eCCCCeEEEEEec
Confidence             456777777653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.26  E-value=8.5e-11  Score=116.18  Aligned_cols=148  Identities=10%  Similarity=-0.020  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCEEEEEeCC----------CeEEEEeCCC------CcceEEee-cCCCCeEEEEEecCCCEEEEecCC--
Q 040274           70 TDLMRVNPFNGVVSLGHSG----------GTVTMWKPTT------SALLIKML-YHQGPVSALAFHPNGHLMATTGKE--  130 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~d----------g~v~lwd~~~------~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d--  130 (359)
                      +.+++|+|||+.|++++.+          ..|++||+.+      +. ...+. .+...+.+++|+|||++|+.++.+  
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence            4678899999999998876          5899999987      54 34555 556778899999999999887755  


Q ss_pred             ------CeEEEEEcC-CC---eeeEee---cCCceeEEEcCCC-cE-EEEcCC--cEEEEcCCCCCccccccccccCCCC
Q 040274          131 ------CKIKIWDLR-KY---EVLQTL---TGHAKTLDFSQKG-LL-AVGTGS--FAQILGDFSGSHNYSRYMGNSMVKG  193 (359)
Q Consensus       131 ------~~i~vwd~~-~~---~~~~~~---~~~v~~~~~s~~g-l~-~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~  193 (359)
                            ..|++||+. ++   ......   ...+..+.|+||| ++ +++.++  .|.+||+..+ ........+.. ..
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~-~~  288 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREEE-FA  288 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSB-SS
T ss_pred             CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeeccccccc-cc
Confidence                  379999999 56   433332   3567899999999 44 444566  6777774333 22222222211 00


Q ss_pred             -----cceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          194 -----YQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       194 -----~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                           ..+.+++|+|++.++++++. +...||.
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence                 01567899999999999888 7777763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.25  E-value=9.4e-11  Score=115.87  Aligned_cols=145  Identities=10%  Similarity=0.039  Sum_probs=100.8

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--C-CcceEEeec-----CCCCeEEEEEecCCCEEEEecCC---------
Q 040274           72 LMRVN--PFNGV-VSLGHS-GGTVTMWKPT--T-SALLIKMLY-----HQGPVSALAFHPNGHLMATTGKE---------  130 (359)
Q Consensus        72 ~l~~s--p~~~~-l~tg~~-dg~v~lwd~~--~-~~~~~~~~~-----h~~~v~~l~~~p~g~~l~s~~~d---------  130 (359)
                      ...|+  |||+. |+.++. +..|.+|++.  + +. ...+..     |...+.+++|+|||+.|++++.|         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            55565  99988 776654 5677777776  3 43 444544     66788999999999999998877         


Q ss_pred             -CeEEEEEcCC------CeeeEee---cCCceeEEEcCCC--cEEEEcC--------CcEEEEcCCCCC---cccccccc
Q 040274          131 -CKIKIWDLRK------YEVLQTL---TGHAKTLDFSQKG--LLAVGTG--------SFAQILGDFSGS---HNYSRYMG  187 (359)
Q Consensus       131 -~~i~vwd~~~------~~~~~~~---~~~v~~~~~s~~g--l~~~~~d--------~~i~v~d~~~~~---~~~~~~~~  187 (359)
                       ..|++||+.+      +......   ...+..++|||||  ++.++.+        ..|.+||+...+   ........
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence             5899999987      5543322   2346789999999  5555544        379999975332   22222222


Q ss_pred             ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          188 NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       188 ~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +    ...+.++.|+|||++++++..++...||.
T Consensus       240 ~----~~~~~~~~~spdg~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          240 P----EEAIAQAEWAPDGSLIVATDRTGWWNLHR  269 (662)
T ss_dssp             T----TBCEEEEEECTTSCEEEEECTTSSCEEEE
T ss_pred             C----CceEcceEECCCCeEEEEECCCCCeEEEE
Confidence            2    23689999999999888888888555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.25  E-value=3.7e-11  Score=110.52  Aligned_cols=136  Identities=10%  Similarity=-0.018  Sum_probs=100.6

Q ss_pred             EEEcCCCCEEEEEeC-CC--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--
Q 040274           73 MRVNPFNGVVSLGHS-GG--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--  147 (359)
Q Consensus        73 l~~sp~~~~l~tg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--  147 (359)
                      .+|+|||++|++++. +|  .|.+||+.+++......++...+.++.|+|||+.|++++.++.|++||+.+++....+  
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            789999999998887 66  4888999988877666666666667889999999999999999999999998765444  


Q ss_pred             cCC-ceeE--EEcCCC-cEEEE-----------------------cCCcEEEEcCCCCCccccccccccCCCCcceeEEE
Q 040274          148 TGH-AKTL--DFSQKG-LLAVG-----------------------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVS  200 (359)
Q Consensus       148 ~~~-v~~~--~~s~~g-l~~~~-----------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~  200 (359)
                      ... +...  .++|+| ++++.                       .+..|.+||+.++ . ...+..+..    .+..+.
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~----~~~~~~  194 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQ----WLGHPI  194 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESS----CEEEEE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCc----cccccE
Confidence            222 2223  348998 44421                       2367899997654 2 233333322    589999


Q ss_pred             Ecc-CCCEEEEEeCC
Q 040274          201 FRP-YEDVLGIGHSM  214 (359)
Q Consensus       201 ~sp-~~~~l~~g~~d  214 (359)
                      |+| +|..|+.++.+
T Consensus       195 ~sp~dg~~l~~~~~~  209 (388)
T 3pe7_A          195 YRPYDDSTVAFCHEG  209 (388)
T ss_dssp             EETTEEEEEEEEECS
T ss_pred             ECCCCCCEEEEEEec
Confidence            999 99998877754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.24  E-value=2.2e-09  Score=96.65  Aligned_cols=169  Identities=7%  Similarity=-0.047  Sum_probs=117.1

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSG----GTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~d----g~v~lwd~~~~~~~~~  104 (359)
                      .+++|+|+|+.++++..                       .+.+++++|++.+++++..+    +.|.+||+.++.....
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            67888999997766543                       47889999999888877766    6899999987765433


Q ss_pred             ee--cCCCCeEEEEEecCCCEEEEecC------CCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEE-EcCCcEE
Q 040274          105 ML--YHQGPVSALAFHPNGHLMATTGK------ECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAV-GTGSFAQ  171 (359)
Q Consensus       105 ~~--~h~~~v~~l~~~p~g~~l~s~~~------d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~-~~d~~i~  171 (359)
                      +.  .+...+++++++|+|.++++...      .+.|..||..+++.....  ...+..++|+|+|  ++.+ +.++.|.
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence            32  24457899999999998887654      356777776655443222  2457889999998  3333 3468999


Q ss_pred             EEcCCCCCcccccc-----ccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          172 ILGDFSGSHNYSRY-----MGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       172 v~d~~~~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +||+...+.....+     ....  ....+..++++++|.++++...++.+.+|.+
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFT--GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECC--SSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEecCCCcCcccccceEEEecC--CCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            99965332222111     0110  0125788999999998888777787888765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.24  E-value=1.2e-09  Score=95.15  Aligned_cols=165  Identities=9%  Similarity=-0.018  Sum_probs=115.5

Q ss_pred             eEEEECCCCCEEE-Eecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-
Q 040274           52 ILWILPSSGRYMA-VAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-  106 (359)
Q Consensus        52 ~~l~~spdg~~l~-~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-  106 (359)
                      .+++++++|+.++ +...                       .+.+|++++++.++++.. ++.|.+||..+... ..+. 
T Consensus        27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~  104 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF  104 (270)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCC
T ss_pred             cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeec
Confidence            6788999998666 4222                       567899999988666655 88999999876543 2332 


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCcc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVG-TGSFAQILGDFSGSHN  181 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~  181 (359)
                      .....+.+++++|+|.++++...++.|.+||..+.......   ...+.+++++++| ++.+. .++.|.+||.... ..
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~  183 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQ  183 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CE
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ce
Confidence            33357899999999998888888899999986654433222   1357899999999 55444 4689999995433 22


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      .......    ...+.+++++++|.++++...++.+.+|.+.
T Consensus       184 ~~~~~~~----~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          184 VVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EECCCSS----CCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             EeecccC----CCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            1111111    1258899999999777777777777777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.23  E-value=3.4e-10  Score=113.04  Aligned_cols=139  Identities=12%  Similarity=0.011  Sum_probs=96.6

Q ss_pred             eeEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCe------------
Q 040274           70 TDLMRVNPFNGVVSLGHSGG-----TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK------------  132 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~------------  132 (359)
                      +..++|||||++|+.++.++     .|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.            
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            67899999999998876543     8999999999876543332 23678999999999999887765            


Q ss_pred             ----EEEEEcCCCee----eEeec---CCceeEEEcCCC--cEEEEc-----CCcEEEEcCCC------CCccccccccc
Q 040274          133 ----IKIWDLRKYEV----LQTLT---GHAKTLDFSQKG--LLAVGT-----GSFAQILGDFS------GSHNYSRYMGN  188 (359)
Q Consensus       133 ----i~vwd~~~~~~----~~~~~---~~v~~~~~s~~g--l~~~~~-----d~~i~v~d~~~------~~~~~~~~~~~  188 (359)
                          |++|++.++..    +....   ..+.++.|||||  ++.++.     +..|.+||+..      +......+..+
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence                99999988752    22222   235789999999  444443     56899999654      22123344433


Q ss_pred             cCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          189 SMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       189 ~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      ..    .+.. .|+|+|+.|+..+..
T Consensus       286 ~~----~~~~-~~s~dg~~l~~~s~~  306 (710)
T 2xdw_A          286 FE----GEYD-YVTNEGTVFTFKTNR  306 (710)
T ss_dssp             SS----SCEE-EEEEETTEEEEEECT
T ss_pred             CC----cEEE-EEeccCCEEEEEECC
Confidence            22    2333 588999888776653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.23  E-value=5.9e-10  Score=111.07  Aligned_cols=167  Identities=8%  Similarity=-0.049  Sum_probs=114.4

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ce--eEEEEcCCCCEEEEEeCCCe-------------
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RT--DLMRVNPFNGVVSLGHSGGT-------------   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v--~~l~~sp~~~~l~tg~~dg~-------------   90 (359)
                      .+++|||||++||.+..                          .+  ..++|+|||+.|++++.|..             
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~  203 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT  203 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence            67899999999995322                          12  68999999999999988776             


Q ss_pred             EEEEeCCCCcc--eEE--eecCCCCeEEEEEecCCCEEEEecCCC----eEEEEEcCCCeeeEee--cCCceeEEEcCCC
Q 040274           91 VTMWKPTTSAL--LIK--MLYHQGPVSALAFHPNGHLMATTGKEC----KIKIWDLRKYEVLQTL--TGHAKTLDFSQKG  160 (359)
Q Consensus        91 v~lwd~~~~~~--~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d~----~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g  160 (359)
                      |++|++.++..  ...  ...|...+.++.|+|||++|+.++.++    .|++||..++......  ...+....| ++|
T Consensus       204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g  282 (695)
T 2bkl_A          204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKD  282 (695)
T ss_dssp             EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETT
T ss_pred             EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCC
Confidence            99999998763  222  234556789999999999988877665    6777776555432222  334555556 555


Q ss_pred             -cEEEEc----CCcEEEEcCCCCCc-cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          161 -LLAVGT----GSFAQILGDFSGSH-NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       161 -l~~~~~----d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                       ++..+.    ++.|.+||+..... ....+..+.  ....+.+++|+ ++.+++++..++...||+.
T Consensus       283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--SSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--SSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence             444443    47899999755421 112232221  13357888888 6778888888988877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.23  E-value=1.2e-09  Score=98.66  Aligned_cols=153  Identities=12%  Similarity=0.074  Sum_probs=107.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCcceEEee-cCCCCeEEEEEecCCCE
Q 040274           69 RTDLMRVNPFNGVVSLGHSG------------------------GTVTMWKPTTSALLIKML-YHQGPVSALAFHPNGHL  123 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d------------------------g~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p~g~~  123 (359)
                      .+.+++++|+|.++++.+.+                        +.|.+||..+++.+..+. ++.....+++++|+|++
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l  104 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY  104 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence            46677777777766666655                        579999999888776554 34457899999999999


Q ss_pred             EEEecCCCeEEEEEcCCCe-eeEeec------------CCceeEEEcC-CC-cEEEE--cCCcEEEEcCCCCCccccccc
Q 040274          124 MATTGKECKIKIWDLRKYE-VLQTLT------------GHAKTLDFSQ-KG-LLAVG--TGSFAQILGDFSGSHNYSRYM  186 (359)
Q Consensus       124 l~s~~~d~~i~vwd~~~~~-~~~~~~------------~~v~~~~~s~-~g-l~~~~--~d~~i~v~d~~~~~~~~~~~~  186 (359)
                      +++...++.|++||..... .+..+.            ..+..++++| +| ++.+.  .++.|.+|| ..+ .....+.
T Consensus       105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g-~~~~~~~  182 (329)
T 3fvz_A          105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG-KFVTQWG  182 (329)
T ss_dssp             EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS-CEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC-CEEEEec
Confidence            9998889999999986432 455541            1468999999 77 54444  478999999 333 3333332


Q ss_pred             cccC------CCCcceeEEEEccC-CCEEEEEeCCCeEEEEEcC
Q 040274          187 GNSM------VKGYQIGKVSFRPY-EDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       187 ~~~~------~~~~~v~~~~~sp~-~~~l~~g~~dg~~~i~~~g  223 (359)
                      ....      ..-.....++|+|+ +.++++...++.+.+|.+.
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            1110      01123789999998 7777777788888888765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=1.2e-10  Score=106.95  Aligned_cols=141  Identities=9%  Similarity=0.004  Sum_probs=106.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-----------LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-----------~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      .++.+++++...++++|+.++ +.+|++.+..           +.... .+.+ |+.++|  ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            589999999999999999885 4559865332           22222 4566 999999  89999998 889999999


Q ss_pred             cCCCee---eEeecCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          138 LRKYEV---LQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       138 ~~~~~~---~~~~~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      +++...   +..+...+.++.+.+..+++++.||.|.+||+..... . .   +.    ..|+|++|||+|  +++|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~-~---~~----~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-K-Q---LA----QNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-E-E---EE----ESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-c-c---cc----CCceEEEEcCCc--eEEEEcC
Confidence            987543   3344556777777765588889999999999765432 1 1   21    269999999999  7889999


Q ss_pred             CeEEEEEcCCCC
Q 040274          215 GWSGILVPRSSE  226 (359)
Q Consensus       215 g~~~i~~~gs~~  226 (359)
                      |.+.+|.+....
T Consensus       182 g~i~~~~~~~~~  193 (388)
T 1xip_A          182 RSFQSFAWRNGE  193 (388)
T ss_dssp             SCEEEEEEETTE
T ss_pred             CcEEEEcCCCcc
Confidence            999998765443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=1e-09  Score=97.26  Aligned_cols=146  Identities=13%  Similarity=0.075  Sum_probs=109.1

Q ss_pred             ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           69 RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      ...+++|+|+++ +++++..++.|.+||+.++  ...+..+...+.+++++|+|.++++...++.|.+||..+++.....
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            678899999998 7788888999999999977  6666677788999999999999888888899999999877653332


Q ss_pred             ---c----CCceeEEEcCCC-cEEEE----c--------------CCcEEEEcCCCCCccccccccccCCCCcceeEEEE
Q 040274          148 ---T----GHAKTLDFSQKG-LLAVG----T--------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       148 ---~----~~v~~~~~s~~g-l~~~~----~--------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  201 (359)
                         .    ..+.+++++|+| ++++.    .              .+.|..|+.. + . ...+..+.    .....++|
T Consensus       107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~----~~~~gi~~  179 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T-LSAPIRDR----VKPNGLAF  179 (296)
T ss_dssp             CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C-EEEEECCC----SSEEEEEE
T ss_pred             eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C-EEEeecCC----CCCccEEE
Confidence               1    246789999999 55531    1              3466677633 2 2 22222222    25789999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEcC
Q 040274          202 RPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +|+|+.|++.+.++.+.+|...
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCeEEEEEEC
Confidence            9999999777777888777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.14  E-value=7.1e-10  Score=110.47  Aligned_cols=133  Identities=9%  Similarity=-0.069  Sum_probs=87.8

Q ss_pred             eeEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCcceEEeecCCCCe--EEEEEecCCCEEEEecCCCe----------
Q 040274           70 TDLMRVNPFNGVVSLG-----HSGGTVTMWKPTTSALLIKMLYHQGPV--SALAFHPNGHLMATTGKECK----------  132 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg-----~~dg~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~p~g~~l~s~~~d~~----------  132 (359)
                      +.+++|||||++|+.+     +.+..|++||+.+++.+.  ..+...+  .+++|+|||+.|+.++.|..          
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            7789999999998844     334689999999987651  1122222  68999999999999988776          


Q ss_pred             ---EEEEEcCCCe----eeEeec---CCceeEEEcCCC--cEEEEcCC----cEEEEcCCCCCccccccccccCCCCcce
Q 040274          133 ---IKIWDLRKYE----VLQTLT---GHAKTLDFSQKG--LLAVGTGS----FAQILGDFSGSHNYSRYMGNSMVKGYQI  196 (359)
Q Consensus       133 ---i~vwd~~~~~----~~~~~~---~~v~~~~~s~~g--l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~v  196 (359)
                         |++|++.++.    ++....   ..+.++.|||||  ++.++.++    .|.+|+...+  ....+..+..    .+
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~----~~  274 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVG----AK  274 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSS----CC
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCC----ce
Confidence               9999998875    333322   346789999999  55555444    6677763222  2333333321    34


Q ss_pred             eEEEEccCCCEEEEEe
Q 040274          197 GKVSFRPYEDVLGIGH  212 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~  212 (359)
                      ....| |+|. |+..+
T Consensus       275 ~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             EEEEE-ETTE-EEEEE
T ss_pred             EEEEe-cCCc-EEEEE
Confidence            55555 5666 44444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.12  E-value=1.6e-09  Score=98.05  Aligned_cols=135  Identities=10%  Similarity=0.069  Sum_probs=91.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC-------------
Q 040274           69 RTDLMRVNPFNGVVSLGHSG---G--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-------------  130 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~d---g--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d-------------  130 (359)
                      .+.+++|||+|+.|++++.+   +  .|.+|++.+++....... .. +.+++|+|||+.|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            46779999999998887754   3  488888888776554433 34 9999999999998887642             


Q ss_pred             --------------CeEEEEEcCCCeeeEee--cCCceeEEEcCCC-cEEEEcC------C-cEEEEcCCCCCccccccc
Q 040274          131 --------------CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-LLAVGTG------S-FAQILGDFSGSHNYSRYM  186 (359)
Q Consensus       131 --------------~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l~~~~~d------~-~i~v~d~~~~~~~~~~~~  186 (359)
                                    ..|++||+.+++.+..+  . .+..++|+|+| +++++.+      . ...||.+. .+. ...+.
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~  214 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMF  214 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc-eEEec
Confidence                          57999999988763333  4 78899999999 3344333      1 33444432 222 22222


Q ss_pred             cccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          187 GNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       187 ~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      .+ .    .+.++  +|+|++|+.++.++
T Consensus       215 ~~-~----~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          215 EK-V----SFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EE-E----SEEEE--EECSSCEEEEECCS
T ss_pred             cC-c----ceeeE--CCCCCEEEEEEccc
Confidence            22 2    34444  99999988777543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=1.1e-08  Score=90.03  Aligned_cols=158  Identities=12%  Similarity=0.085  Sum_probs=115.6

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEeec--
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKMLY--  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~~~~~--  107 (359)
                      .++.++|+|++|++...                     .+.++.+.|+|.++++.+. ++.|..+|. +++.+..+..  
T Consensus        40 ~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~  118 (276)
T 3no2_A           40 NSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET  118 (276)
T ss_dssp             CEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred             cCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence            67788888888885432                     4567888999999999887 788888886 5776666542  


Q ss_pred             ----CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CCceeEEEcCCC-cE-EEEcCCcEEEEcCCCCC
Q 040274          108 ----HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHAKTLDFSQKG-LL-AVGTGSFAQILGDFSGS  179 (359)
Q Consensus       108 ----h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~v~~~~~s~~g-l~-~~~~d~~i~v~d~~~~~  179 (359)
                          +......+++.++|+++++.+.++.|.+||.. |+.+.++.  ..+.++.+.++| ++ +++.++.|..||..++ 
T Consensus       119 ~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-  196 (276)
T 3no2_A          119 GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-  196 (276)
T ss_dssp             SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-
T ss_pred             CCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-
Confidence                22345567789999999999999999999998 99988884  457788889998 44 4445568999995544 


Q ss_pred             ccccccccccC--CCCcceeEEEEccCCCEEEEEe
Q 040274          180 HNYSRYMGNSM--VKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       180 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      ..+-.+.....  ..-..+..+...++|.++++.+
T Consensus       197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            44444432211  0112478899999999888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.10  E-value=4.2e-08  Score=86.26  Aligned_cols=172  Identities=9%  Similarity=0.018  Sum_probs=119.9

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-eec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK-MLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~-~~~  107 (359)
                      .+++++++|..+++...                       .+.+++++|++.++++...++.|.+||+ ++..... +..
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~  138 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN  138 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence            67777777776665432                       4678899999988887777889999998 5543322 223


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-ec---CCceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCcc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-LT---GHAKTLDFSQKG-LLAVG-TGSFAQILGDFSGSHN  181 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-~~---~~v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~  181 (359)
                      +...+.+++++++|.++++...++.|.+||. +++.... +.   ..+.+++++++| ++.+. .++.|.+||. .+ ..
T Consensus       139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~~  215 (299)
T 2z2n_A          139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-EI  215 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CE
T ss_pred             CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-cE
Confidence            4567899999999998888877889999999 6655432 22   346789999999 55555 4688999996 43 22


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                       ..+... . ....+.+++++++|.++++...++.+.+|.+   ++.+..+.
T Consensus       216 -~~~~~~-~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~---~g~~~~~~  261 (299)
T 2z2n_A          216 -TEFKIP-T-PNARPHAITAGAGIDLWFTEWGANKIGRLTS---NNIIEEYP  261 (299)
T ss_dssp             -EEEECS-S-TTCCEEEEEECSTTCEEEEETTTTEEEEEET---TTEEEEEE
T ss_pred             -EEEECC-C-CCCCceeEEECCCCCEEEeccCCceEEEECC---CCceEEEe
Confidence             222111 1 2236899999999997776667788888876   23455443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.09  E-value=4.7e-09  Score=105.29  Aligned_cols=164  Identities=10%  Similarity=-0.009  Sum_probs=108.9

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCe--------------
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGT--------------   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~--------------   90 (359)
                      .+++|||||++|+++..                           .+..++|+|| +.|+.++.++.              
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCE
Confidence            57899999999998643                           2267899999 98888887654              


Q ss_pred             EEEEeCCCCcc--eEEee--cCCCCeEEEEEecCCCEEEEecCCC-----eEEEEEcCCC--eeeEee---cCCceeEEE
Q 040274           91 VTMWKPTTSAL--LIKML--YHQGPVSALAFHPNGHLMATTGKEC-----KIKIWDLRKY--EVLQTL---TGHAKTLDF  156 (359)
Q Consensus        91 v~lwd~~~~~~--~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~-----~i~vwd~~~~--~~~~~~---~~~v~~~~~  156 (359)
                      |++|++.++..  ...+.  .+...+.++.|+|||++|+.++.++     .|++||+.++  .+...+   ...+... +
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~  323 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-V  323 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-E
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-E
Confidence            89999987753  22332  2334588999999999988776543     8999999876  313334   2223333 3


Q ss_pred             cCCC--cEEEEcC----CcEEEEcCCCCC-ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          157 SQKG--LLAVGTG----SFAQILGDFSGS-HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       157 s~~g--l~~~~~d----~~i~v~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +|+|  ++..+.+    +.|.+||+.... .....+..+    ...+.++.|+ ++.++++...++...||+.
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            5777  5555543    459999965431 222222222    2246677777 5567778888888777643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.08  E-value=1e-08  Score=90.28  Aligned_cols=161  Identities=12%  Similarity=0.033  Sum_probs=119.2

Q ss_pred             EECC-CCCEEEEecc----ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC-CCeEEEEEecCCCEEEEec
Q 040274           55 ILPS-SGRYMAVAGR----RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-GPVSALAFHPNGHLMATTG  128 (359)
Q Consensus        55 ~~sp-dg~~l~~~~~----~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~p~g~~l~s~~  128 (359)
                      .|++ +|+.+-.-..    .++++.++|+|++|+  +.++.|..||+ +++.+..+..+. ..+.++.+.|+|+++++.+
T Consensus        19 ~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~   95 (276)
T 3no2_A           19 IINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWC   95 (276)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEec
Confidence            4555 6665543221    488999999999888  45788999999 899999888653 5788999999999999988


Q ss_pred             C-CCeEEEEEcCCCeeeEeec------C---CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcce
Q 040274          129 K-ECKIKIWDLRKYEVLQTLT------G---HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQI  196 (359)
Q Consensus       129 ~-d~~i~vwd~~~~~~~~~~~------~---~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v  196 (359)
                      . ++.|..+|. +++.+..+.      .   ....+++.++|  +++...++.|.+||.. + +.+-.+....     .+
T Consensus        96 ~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w~~~~~~-----~~  167 (276)
T 3no2_A           96 GHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLNSVKLSG-----TP  167 (276)
T ss_dssp             STTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEECSS-----CC
T ss_pred             CCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CEEEEEECCC-----Cc
Confidence            7 788888886 677776662      1   23567788999  5555567999999954 4 5555554432     45


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          197 GKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .++.+.++|+++++++.++.+..+.+.++.
T Consensus       168 ~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          168 FSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             cceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            677889999999999988877777665443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=7.1e-09  Score=92.43  Aligned_cols=158  Identities=13%  Similarity=0.102  Sum_probs=110.3

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEE----EeC-------------C
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSL----GHS-------------G   88 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~t----g~~-------------d   88 (359)
                      ..+.++++|+++++...                          .++.++++|+|.++++    |..             .
T Consensus        89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           89 NGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             ceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            77889999987766422                          3567999999988876    332             2


Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC------CeEEEEEcCCCee--eEee----cCCceeEEE
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE------CKIKIWDLRKYEV--LQTL----TGHAKTLDF  156 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~~~--~~~~----~~~v~~~~~  156 (359)
                      +.|..||+.+++.....  +....+.++|+|+++.|+.+...      +.|.+||+..+..  ...+    .+.+..+++
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV  246 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence            56888888777654433  44567899999999987777665      7899999876431  1111    244678999


Q ss_pred             cCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          157 SQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       157 s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      +++| +++++ .+.|.+|+. .+ .....+..+.     .+.+++|+|+++.|.+++.++..++
T Consensus       247 d~~G~lwv~~-~~gv~~~~~-~g-~~~~~~~~~~-----~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          247 DRGGWLWSSS-GTGVCVFDS-DG-QLLGHIPTPG-----TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CTTSCEEECC-SSEEEEECT-TS-CEEEEEECSS-----CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCCCEEEec-CCcEEEECC-CC-CEEEEEECCC-----ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            9999 65555 445999995 33 3444443332     4888999999999998888776555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=9.5e-09  Score=99.53  Aligned_cols=151  Identities=7%  Similarity=-0.034  Sum_probs=110.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC--CCcceEEeecCCCCeEEEEEe----cCCCEEEEecC-CCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT--TSALLIKMLYHQGPVSALAFH----PNGHLMATTGK-ECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~--~~~~~~~~~~h~~~v~~l~~~----p~g~~l~s~~~-d~~i~vwd~~~~  141 (359)
                      .+.++.|+|+++++++++.|+.|.+||+.  +++.+..+..... ...++|+    |||+++++++. +++|.+||..++
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            57899999999999999999999999996  7777777765443 5789999    69998877765 589999999999


Q ss_pred             eeeEeec--C------------CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC
Q 040274          142 EVLQTLT--G------------HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       142 ~~~~~~~--~------------~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      +++..+.  +            .+..+..++++   +++...+|.|.++|.............    .+....++.|+|+
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~----~~~~~~d~~~~pd  352 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS----AERFLHDGGLDGS  352 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE----CCSSEEEEEECTT
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee----ccccccCceECCC
Confidence            8887762  1            34677888887   444445689999996443211111111    1224678899999


Q ss_pred             CCEEEEEe-CCCeEEEEEcCC
Q 040274          205 EDVLGIGH-SMGWSGILVPRS  224 (359)
Q Consensus       205 ~~~l~~g~-~dg~~~i~~~gs  224 (359)
                      |+++++++ .++.+.++...+
T Consensus       353 gr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTT
T ss_pred             CCEEEEEeCCCCeEEEEECCC
Confidence            99987766 466666665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.07  E-value=4.3e-08  Score=86.18  Aligned_cols=163  Identities=7%  Similarity=-0.001  Sum_probs=115.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--  106 (359)
                      .+++++++|+.+++...                       .+.++++++++.++++...++.|..||.. +. ...+.  
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~   95 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLP   95 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECS
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCC
Confidence            67778888876665431                       47789999999888877778899999986 33 22232  


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-ec---CCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-LT---GHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSH  180 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-~~---~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~  180 (359)
                      .+...+.+++++|+|.++++...++.|.+||. ++..... ..   ..+.+++++++| ++.+.. ++.|.+||. .+ .
T Consensus        96 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~  172 (299)
T 2z2n_A           96 NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-D  172 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C
T ss_pred             CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-c
Confidence            24557899999999998888878899999998 5544322 22   347899999999 555554 578999996 33 2


Q ss_pred             cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          181 NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .. .+....  ....+.+++++++|.++++...++.+.++.+
T Consensus       173 ~~-~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          173 IT-EFKIPT--PASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EE-EEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EE-EeeCCC--CCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            22 121111  1235889999999997777766777777766

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.03  E-value=3.9e-08  Score=87.27  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeC-----------CCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHS-----------GGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~-----------dg~v~lwd   95 (359)
                      .+++++|+|+++++...                         .++.++++|+|.++++...           .+.|..++
T Consensus        57 ~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d  136 (297)
T 3g4e_A           57 SSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF  136 (297)
T ss_dssp             EEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred             EEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence            78889999996665443                         3677899999986665432           23444444


Q ss_pred             CCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcC--CCee-----eEee---cCCceeEEEcCCC-cEE
Q 040274           96 PTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLR--KYEV-----LQTL---TGHAKTLDFSQKG-LLA  163 (359)
Q Consensus        96 ~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~--~~~~-----~~~~---~~~v~~~~~s~~g-l~~  163 (359)
                      .. +. +..+..+....+.++|+|+++.|+ +.+.++.|.+||+.  ++..     +..+   .+.+..++++++| +++
T Consensus       137 ~~-g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          137 PD-HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             TT-SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred             CC-CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence            43 33 333334445578999999998664 55567899999973  4432     2222   2356889999999 554


Q ss_pred             EE-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEc-cCCCEEEEEeC
Q 040274          164 VG-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFR-PYEDVLGIGHS  213 (359)
Q Consensus       164 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~g~~  213 (359)
                      +. .++.|.+||..++ .....+..+.    ..+++++|. |+++.|++++.
T Consensus       215 a~~~~~~v~~~d~~tG-~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTG-KRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEETTTEEEEECTTTC-CEEEEEECSS----SBEEEEEEESGGGCEEEEEEB
T ss_pred             EEcCCCEEEEEcCCCc-eEEEEEECCC----CCceEEEEeCCCCCEEEEEcC
Confidence            44 4678999995434 4444444332    268999998 89887766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.02  E-value=2.8e-08  Score=89.65  Aligned_cols=145  Identities=8%  Similarity=0.025  Sum_probs=98.1

Q ss_pred             EEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC----------CeEEEEEcC
Q 040274           72 LMRVNPFNGVVSLGH--SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE----------CKIKIWDLR  139 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d----------~~i~vwd~~  139 (359)
                      .|++  ++..+++++  .++.|.+||+.+++.+..+... .....+.++|+|++++++..+          +.|.+||..
T Consensus       135 ~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          135 QMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             CEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             eEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            4455  344455554  4889999999999887777643 345788999999988777655          789999999


Q ss_pred             CCeeeEeec----CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCEEEEE--
Q 040274          140 KYEVLQTLT----GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIG--  211 (359)
Q Consensus       140 ~~~~~~~~~----~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g--  211 (359)
                      +++.+..+.    ..+..++|+|++ .+.++.. .|.+||+.+.......+...   .+.....++++|+ +.++++.  
T Consensus       212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~  287 (328)
T 3dsm_A          212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAI  287 (328)
T ss_dssp             TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECT
T ss_pred             CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEccc
Confidence            998876663    257999999988 4434433 89999965442211111111   1236889999995 5555554  


Q ss_pred             --eCCCeEEEEEcC
Q 040274          212 --HSMGWSGILVPR  223 (359)
Q Consensus       212 --~~dg~~~i~~~g  223 (359)
                        ..++.+.+|.+.
T Consensus       288 ~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          288 DYQQQGIVYRYSPQ  301 (328)
T ss_dssp             TSSSEEEEEEECTT
T ss_pred             ccccCCEEEEECCC
Confidence              456667776654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.99  E-value=9.4e-08  Score=84.85  Aligned_cols=147  Identities=12%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             eeEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCcceEEeecCCCCeEEEEEe----cCCCEEE-EecC
Q 040274           70 TDLMRVNPFNGVVSLGHSG---------------GTVTMWKPTTSALLIKMLYHQGPVSALAFH----PNGHLMA-TTGK  129 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~d---------------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~----p~g~~l~-s~~~  129 (359)
                      +.+++++|+|.++++...+               +.|..|+.. ++... +..+......++|+    |++..|+ +...
T Consensus       119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECC
Confidence            5688999999887776655               578888876 54333 33344557899999    9996554 4456


Q ss_pred             CCeEEEEEcC-CCe-----eeEeec----CCceeEEEcCCC-cEEE-EcCCcEEEEcCCCCCccccccccccCCCCccee
Q 040274          130 ECKIKIWDLR-KYE-----VLQTLT----GHAKTLDFSQKG-LLAV-GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIG  197 (359)
Q Consensus       130 d~~i~vwd~~-~~~-----~~~~~~----~~v~~~~~s~~g-l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~  197 (359)
                      ++.|.+||+. ++.     ....+.    +.+..++++++| ++++ ..++.|.+||..++ .....+..+    ...+.
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~~----~~~~~  271 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCP----FEKPS  271 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECS----SSCEE
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeCC----CCCce
Confidence            8899999986 443     222333    447889999999 4444 46789999995433 333333322    23689


Q ss_pred             EEEEccCCCEEEEEe-CCCeEEEEEcC
Q 040274          198 KVSFRPYEDVLGIGH-SMGWSGILVPR  223 (359)
Q Consensus       198 ~~~~sp~~~~l~~g~-~dg~~~i~~~g  223 (359)
                      +++|+|+|..|.+++ .++.+..|...
T Consensus       272 ~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          272 NLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            999999999665554 45555555543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.97  E-value=8.3e-09  Score=94.70  Aligned_cols=140  Identities=17%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             ceeEEEEcC-CCCEEEEEeCC------CeEEEEeCCCCcceEEeecC--CCCeEEEEEecCCCEEEEecCC-----CeEE
Q 040274           69 RTDLMRVNP-FNGVVSLGHSG------GTVTMWKPTTSALLIKMLYH--QGPVSALAFHPNGHLMATTGKE-----CKIK  134 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~d------g~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~p~g~~l~s~~~d-----~~i~  134 (359)
                      .+..+.|+| ++..|+.++.+      ..|.+||+.++... .+..+  ...+..++|+|+|++|+.++.+     +.|+
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            678899999 78877776543      36888898765533 33333  2357889999999987776543     4599


Q ss_pred             EEEcCCCeeeEee--cCCceeEEEcC-CC-cEEE-E----------------cCCcEEEEcCCCCCccccccccccCCC-
Q 040274          135 IWDLRKYEVLQTL--TGHAKTLDFSQ-KG-LLAV-G----------------TGSFAQILGDFSGSHNYSRYMGNSMVK-  192 (359)
Q Consensus       135 vwd~~~~~~~~~~--~~~v~~~~~s~-~g-l~~~-~----------------~d~~i~v~d~~~~~~~~~~~~~~~~~~-  192 (359)
                      +||+.+++.....  .+ .. +.|+| +| +++. +                .+..|++||+..+ .. ..+..+.... 
T Consensus       268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~-~~-~~l~~~~~~~~  343 (396)
T 3c5m_A          268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK-SA-QKLCKHSTSWD  343 (396)
T ss_dssp             EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT-BC-CEEEECCCCCC
T ss_pred             EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC-ce-EEccCCCCccc
Confidence            9999887653322  32 23 89999 99 4433 2                2368999996544 22 2333331100 


Q ss_pred             ------CcceeEEEEccCCCEEEEEeC
Q 040274          193 ------GYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       193 ------~~~v~~~~~sp~~~~l~~g~~  213 (359)
                            ...+.+++|+|+|+.|+.++.
T Consensus       344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          344 VLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cccccccCCCCCceEccCCCeEEEEec
Confidence                  002566899999998887765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.96  E-value=4.6e-08  Score=88.16  Aligned_cols=150  Identities=9%  Similarity=-0.034  Sum_probs=104.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC-----CCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-----GPVSALAFHPNGHLMATTG-KECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~  142 (359)
                      ....+++++++.++++...++.|.+||+.+++....+....     .....+++ .++.++++.. .++.|.+||+.+++
T Consensus        85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~  163 (328)
T 3dsm_A           85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK  163 (328)
T ss_dssp             SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred             CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence            67889998988544444488999999999998776665433     14456777 4454444443 48899999999998


Q ss_pred             eeEeec--CCceeEEEcCCC-cEEEEcC-----------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE
Q 040274          143 VLQTLT--GHAKTLDFSQKG-LLAVGTG-----------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL  208 (359)
Q Consensus       143 ~~~~~~--~~v~~~~~s~~g-l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  208 (359)
                      .+..+.  ..+..+.++|+| ++.++.+           +.|.+||..+. .....+...   .+.....++|+|+++.|
T Consensus       164 ~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~---~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          164 VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFK---LGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECC---TTCCCEEEEECTTSCEE
T ss_pred             EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecC---CCCCceeEEEecCCCEE
Confidence            887773  446889999999 5555543           68999996543 333333221   12358899999999998


Q ss_pred             EEEeCCCeEEEEEcCCC
Q 040274          209 GIGHSMGWSGILVPRSS  225 (359)
Q Consensus       209 ~~g~~dg~~~i~~~gs~  225 (359)
                      +++..  .+.+|...++
T Consensus       240 yv~~~--~v~~~d~~t~  254 (328)
T 3dsm_A          240 YWINN--DIWRMPVEAD  254 (328)
T ss_dssp             EEESS--SEEEEETTCS
T ss_pred             EEEcc--EEEEEECCCC
Confidence            88765  5566665443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.96  E-value=2.3e-08  Score=91.52  Aligned_cols=135  Identities=10%  Similarity=0.069  Sum_probs=92.2

Q ss_pred             CCCEEEEEe------CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec----------CCCeEEEEEcCCC
Q 040274           78 FNGVVSLGH------SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG----------KECKIKIWDLRKY  141 (359)
Q Consensus        78 ~~~~l~tg~------~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~----------~d~~i~vwd~~~~  141 (359)
                      ++.++++..      .|+.|.+||..+++.+..+..+..+  .++|+|||+++++++          .++.|.+||+.++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555555543      3789999999999988888776655  899999999998886          3678999999998


Q ss_pred             eeeEeec---------CCceeEEEcCCC--cEEEEc--CCcEEEEcCCCCCccccc-cccccCCCCcceeEEEEccCC-C
Q 040274          142 EVLQTLT---------GHAKTLDFSQKG--LLAVGT--GSFAQILGDFSGSHNYSR-YMGNSMVKGYQIGKVSFRPYE-D  206 (359)
Q Consensus       142 ~~~~~~~---------~~v~~~~~s~~g--l~~~~~--d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~-~  206 (359)
                      +.+.++.         ..+..++|+|+|  ++++..  ++.|.+||+... ..... +...      ....+.+.|++ .
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~------~~~~v~~~p~~~~  164 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAA------GCWSVIPQPNRPR  164 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGT------TEEEEEECTTSSS
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCC------CcceeEEcCCCCe
Confidence            8887773         246789999999  444443  578999997654 33333 3221      12223445544 3


Q ss_pred             EEEEEeCCCeEEEEE
Q 040274          207 VLGIGHSMGWSGILV  221 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~  221 (359)
                      .+++.+.||.+.++.
T Consensus       165 ~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          165 SFMTICGDGGLLTIN  179 (361)
T ss_dssp             EEEEEETTSSEEEEE
T ss_pred             eEEEECCCCcEEEEE
Confidence            444555555544443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.94  E-value=1.9e-08  Score=92.07  Aligned_cols=154  Identities=7%  Similarity=-0.056  Sum_probs=106.8

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecC------CCCeEEEEEecCCCEEEEecC--CCeE
Q 040274           72 LMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYH------QGPVSALAFHPNGHLMATTGK--ECKI  133 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h------~~~v~~l~~~p~g~~l~s~~~--d~~i  133 (359)
                      .++|+|+++++++++          .+++|.+||+.+.+.+..+..+      ......++|+|+|++|++++.  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998886          2678999999998888777532      345678999999999988864  6899


Q ss_pred             EEEEcCCCeeeEe-ecC-CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccccccc-ccCCCCcceeEEEEccCCCE
Q 040274          134 KIWDLRKYEVLQT-LTG-HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMG-NSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       134 ~vwd~~~~~~~~~-~~~-~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~  207 (359)
                      .+||+.+++.+.. +.. ....+.+.|++   +++.+.||.+.+|+....+........ ...........+.++|++..
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999999998888 632 23335677876   778888999998886443332211000 00000011223345678877


Q ss_pred             EEEEeCCCeEEEEEcCCC
Q 040274          208 LGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       208 l~~g~~dg~~~i~~~gs~  225 (359)
                      ++..+.++.+.++...++
T Consensus       214 ~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             EEEEBTTSEEEEEECSSS
T ss_pred             EEEEeCCCeEEEEEecCC
Confidence            777778888777776543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.93  E-value=4.4e-07  Score=79.64  Aligned_cols=164  Identities=9%  Similarity=0.011  Sum_probs=113.5

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-eec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK-MLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~-~~~  107 (359)
                      .+++++++|+..++...                       .+.++++++++.++++...++.|..||.. +..... +..
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~  143 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN  143 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence            66677777776655431                       47788999999888877778899999987 554322 223


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-ec---CCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCcc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-LT---GHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHN  181 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-~~---~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~  181 (359)
                      ....+.+++++++|+++++...++.|.+||. ++..... ..   ..+.+++++++| ++.+.. .+.|.+||. .+ ..
T Consensus       144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~  220 (300)
T 2qc5_A          144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG-EI  220 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CE
T ss_pred             CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC-cE
Confidence            4567899999999998777777889999998 5554332 11   246889999999 555554 567999995 33 22


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      .. +....  ....+.+++++++|.++++...++.+..+.+
T Consensus       221 ~~-~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          221 SE-YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EE-EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             EE-EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            11 11111  2235889999999997777666777777765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.91  E-value=5.1e-07  Score=79.23  Aligned_cols=164  Identities=7%  Similarity=-0.026  Sum_probs=115.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-Eeec
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI-KMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~-~~~~  107 (359)
                      .++.++++|+..++...                       .+.+|++++++.++++...++.|.+||.. +.... .+..
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~  101 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQ  101 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCC
Confidence            67778888876665431                       46788899999887777678899999988 55432 2222


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE-eec---CCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCcc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-TLT---GHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHN  181 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~-~~~---~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~  181 (359)
                      ....+.+++++++|.++++...++.|..||.. ++... .+.   ..+.+++++++| ++.+.. ++.|.+||. .+ ..
T Consensus       102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~  178 (300)
T 2qc5_A          102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-KL  178 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CE
T ss_pred             CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-cE
Confidence            34678999999999988888778899999987 55432 222   357899999999 555554 678999985 33 22


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      . .+... . ....+.+++++++|.++++....+.+.++.+
T Consensus       179 ~-~~~~~-~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          179 E-EYPLP-T-NAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             E-EEECS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             E-EeeCC-C-CCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            2 12111 1 2235889999999987777766777777665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.89  E-value=2.1e-07  Score=83.77  Aligned_cols=154  Identities=14%  Similarity=0.120  Sum_probs=101.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeC------CCeEEEEeCCCCc
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHS------GGTVTMWKPTTSA  100 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~------dg~v~lwd~~~~~  100 (359)
                      .++.++|+|+++++...                         .+++++++|+|.++++...      .+.|..++  +++
T Consensus        93 ~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~  170 (326)
T 2ghs_A           93 SALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK  170 (326)
T ss_dssp             EEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE
T ss_pred             eEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc
Confidence            67788888887776532                         3678899999987665442      24566666  454


Q ss_pred             ceEEeecCCCCeEEEEEecCCCEEEEe-cCCCeEEEEEcC--CC-ee-----eEeec---CCceeEEEcCCC-cEEEE-c
Q 040274          101 LLIKMLYHQGPVSALAFHPNGHLMATT-GKECKIKIWDLR--KY-EV-----LQTLT---GHAKTLDFSQKG-LLAVG-T  166 (359)
Q Consensus       101 ~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d~~i~vwd~~--~~-~~-----~~~~~---~~v~~~~~s~~g-l~~~~-~  166 (359)
                      . ..+..+....++++|+|+|+.|+.+ +.++.|.+||+.  ++ ..     +..+.   +.+..++++++| ++++. .
T Consensus       171 ~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          171 V-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             E-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred             E-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC
Confidence            3 3333344567899999999876544 557899999986  55 32     22232   346789999999 55554 4


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEc-cCCCEEEEEeCC
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFR-PYEDVLGIGHSM  214 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~g~~d  214 (359)
                      ++.|.+||. .+ .....+..+    ...+++++|+ |+++.|++++..
T Consensus       250 ~~~v~~~d~-~g-~~~~~i~~~----~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          250 EGAVDRYDT-DG-NHIARYEVP----GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TTEEEEECT-TC-CEEEEEECS----CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEECC-CC-CEEEEEECC----CCCcEEEEEecCCCCEEEEEecC
Confidence            578999995 33 333333332    2368999998 888877655543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.89  E-value=2.3e-07  Score=82.17  Aligned_cols=153  Identities=9%  Similarity=-0.030  Sum_probs=96.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec----CCCCeEEEEEecCCCEEEEecC-----------CCeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY----HQGPVSALAFHPNGHLMATTGK-----------ECKI  133 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~----h~~~v~~l~~~p~g~~l~s~~~-----------d~~i  133 (359)
                      .+.+++++|++.++++ . ++.|.+||+.+++.......    ....++.++++|+|+++++...           .+.|
T Consensus        55 ~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l  132 (297)
T 3g4e_A           55 PVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGAL  132 (297)
T ss_dssp             CEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEE
T ss_pred             ceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEE
Confidence            6889999999995554 3 56899999988764332221    1234788999999997776532           2345


Q ss_pred             EEEEcCCCeeeEee--cCCceeEEEcCCC--c-EEEEcCCcEEEEcCC-CCCccc--cccccccCCCCcceeEEEEccCC
Q 040274          134 KIWDLRKYEVLQTL--TGHAKTLDFSQKG--L-LAVGTGSFAQILGDF-SGSHNY--SRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       134 ~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~-~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      +.+|.. +......  ....+.++|+|+|  + ++.+.++.|.+||+. ..+...  ..+..... ....+..++++++|
T Consensus       133 ~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          133 YSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTS
T ss_pred             EEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCC
Confidence            555543 3332222  2346889999999  4 334446889999853 222211  11111100 11257889999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCC
Q 040274          206 DVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       206 ~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .+.++...++.+..|.+.++
T Consensus       211 ~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             CEEEEEETTTEEEEECTTTC
T ss_pred             CEEEEEcCCCEEEEEcCCCc
Confidence            88887777787777776544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.87  E-value=2.6e-07  Score=81.99  Aligned_cols=152  Identities=8%  Similarity=-0.049  Sum_probs=98.0

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEE-eec----CCCCeEEEEEecCCCEEEEecCC-------------
Q 040274           70 TDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIK-MLY----HQGPVSALAFHPNGHLMATTGKE-------------  130 (359)
Q Consensus        70 v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~~~~~-~~~----h~~~v~~l~~~p~g~~l~s~~~d-------------  130 (359)
                      +.+++++++ +.++++ +..+.|.+||+. ++.... ...    +...+++++++|+|+++++...+             
T Consensus        73 ~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~  150 (314)
T 1pjx_A           73 PAGCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             CceEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccC
Confidence            567889998 654444 444579999988 654322 211    12357899999999988887665             


Q ss_pred             --CeEEEEEcCCCeeeEee--cCCceeEEEc----CCC--cEEEE-cCCcEEEEcCCCCCccc--cccccccCCCC-cce
Q 040274          131 --CKIKIWDLRKYEVLQTL--TGHAKTLDFS----QKG--LLAVG-TGSFAQILGDFSGSHNY--SRYMGNSMVKG-YQI  196 (359)
Q Consensus       131 --~~i~vwd~~~~~~~~~~--~~~v~~~~~s----~~g--l~~~~-~d~~i~v~d~~~~~~~~--~~~~~~~~~~~-~~v  196 (359)
                        +.|..||.. ++.....  ...+..++|+    |+|  ++.+. .++.|.+||+...+...  ..+..... +. ..+
T Consensus       151 ~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p  228 (314)
T 1pjx_A          151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGA  228 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEE
T ss_pred             CCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCC
Confidence              578888876 5543322  2356889999    998  44443 56899999854222110  11111111 11 257


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          197 GKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ..++++++|.++++...++.+.+|.+.++
T Consensus       229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          229 DGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence            88999999998888877887877776533

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.86  E-value=2.9e-07  Score=85.59  Aligned_cols=167  Identities=11%  Similarity=-0.010  Sum_probs=111.6

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEe--
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGG--TVTMWKPTTSALLIKM--  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg--~v~lwd~~~~~~~~~~--  105 (359)
                      +.|+|+++|+++++...                      ... ++|+|++..|++++.++  .|.+|+..++.....+  
T Consensus       134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~  212 (409)
T 3hrp_A          134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ  212 (409)
T ss_dssp             EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred             eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence            78999999986666543                      233 89999999988888766  7999998766543333  


Q ss_pred             --ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe----ec---CCc-e-eEEEcCC-C-cE-EEEcCCcEE
Q 040274          106 --LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT----LT---GHA-K-TLDFSQK-G-LL-AVGTGSFAQ  171 (359)
Q Consensus       106 --~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~----~~---~~v-~-~~~~s~~-g-l~-~~~~d~~i~  171 (359)
                        ..+...+++++++|++..|+.+..++.|+.||..++.....    ..   +.. . .++|+|+ + ++ +-...+.|.
T Consensus       213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~  292 (409)
T 3hrp_A          213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY  292 (409)
T ss_dssp             CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence              22456678999999544555577789999999987653222    11   112 3 8999995 5 44 444568899


Q ss_pred             EEcCCCCCcccccccccc---C--------CCCcceeEEEEccCCCEEEEEe-CCCeEEEEEc
Q 040274          172 ILGDFSGSHNYSRYMGNS---M--------VKGYQIGKVSFRPYEDVLGIGH-SMGWSGILVP  222 (359)
Q Consensus       172 v~d~~~~~~~~~~~~~~~---~--------~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~~~  222 (359)
                      .|+.. +.  ...+.++.   +        ..-.....++|+|+|.++++-+ .++.++.|..
T Consensus       293 ~~~~~-g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          293 KITPD-GE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EECTT-CC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             EEecC-CC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            99843 21  22222221   0        0012478899999999777777 7788887773

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.83  E-value=4.2e-08  Score=98.37  Aligned_cols=138  Identities=10%  Similarity=0.008  Sum_probs=91.0

Q ss_pred             eeEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCe------------
Q 040274           70 TDLMRVNPFNGVVSLGHSG-----GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK------------  132 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~d-----g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~------------  132 (359)
                      +..++|||||++|+.++.+     ..|++||+.+++.+... .+...+.+++|+|| +.|+.++.|+.            
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            5678999999998887654     36999999999865432 22222467899999 88888776553            


Q ss_pred             --EEEEEcCCCe----eeEeecC---CceeEEEcCCC--cEEEEcC-----CcEEEEcCCCCCcc-ccccccccCCCCcc
Q 040274          133 --IKIWDLRKYE----VLQTLTG---HAKTLDFSQKG--LLAVGTG-----SFAQILGDFSGSHN-YSRYMGNSMVKGYQ  195 (359)
Q Consensus       133 --i~vwd~~~~~----~~~~~~~---~v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~~~~-~~~~~~~~~~~~~~  195 (359)
                        |++|++.++.    .+.....   .+.++.|||||  ++..+.+     ..|.+||+..+... ...+..+..    .
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~  318 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK----A  318 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS----S
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC----c
Confidence              8999998765    2222222   36789999999  4444433     38999996543112 333333321    2


Q ss_pred             eeEEEEccCCCEEEEEeCC
Q 040274          196 IGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       196 v~~~~~sp~~~~l~~g~~d  214 (359)
                      +... ++|+|+.|+..+.+
T Consensus       319 ~~~~-~~~dg~~l~~~s~~  336 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGD  336 (741)
T ss_dssp             CEEE-EEEETTEEEEEECT
T ss_pred             eEEE-EeccCCEEEEEECC
Confidence            3333 34888888777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.82  E-value=6.4e-07  Score=82.23  Aligned_cols=164  Identities=12%  Similarity=0.014  Sum_probs=98.2

Q ss_pred             eEEEECCCCCEEEEec------------c----------------ce------------eEEEEcCCCCEEEEEeC--CC
Q 040274           52 ILWILPSSGRYMAVAG------------R----------------RT------------DLMRVNPFNGVVSLGHS--GG   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~------------~----------------~v------------~~l~~sp~~~~l~tg~~--dg   89 (359)
                      -.+.+||||++|+.+.            .                .+            ..+.|+|+|++|++++.  ++
T Consensus        69 p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence            4889999999998874            1                11            25789999999998874  47


Q ss_pred             eEEEEeCCCCcceEE-eecCCCCeEEEEEecCC-CEEEEecCC-------------------------------------
Q 040274           90 TVTMWKPTTSALLIK-MLYHQGPVSALAFHPNG-HLMATTGKE-------------------------------------  130 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~-~~~h~~~v~~l~~~p~g-~~l~s~~~d-------------------------------------  130 (359)
                      .|.++| .+++.+.. +... +.   +.+.|++ ..+++.+.|                                     
T Consensus       149 ~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec
Confidence            899999 99887766 4321 11   1222222 122222333                                     


Q ss_pred             ----------CeEEEEEcCCCe--eeEee-------------cCCceeEEEcCCC--cEEEEc----------CCcEEEE
Q 040274          131 ----------CKIKIWDLRKYE--VLQTL-------------TGHAKTLDFSQKG--LLAVGT----------GSFAQIL  173 (359)
Q Consensus       131 ----------~~i~vwd~~~~~--~~~~~-------------~~~v~~~~~s~~g--l~~~~~----------d~~i~v~  173 (359)
                                +.+.+.|+....  .+..+             +.....+.++|++  ++++..          ++.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                      344444443221  11111             0112236778887  333322          3579999


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSGILVPRSSE  226 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~-~dg~~~i~~~gs~~  226 (359)
                      |+.+. +....+...     ....++.|+|||+ .++++. .++.+.++...++.
T Consensus       304 D~~t~-~vv~~i~~g-----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          304 TGLVG-QTSSQISLG-----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ECCCC-EEEEEEECC-----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            96544 444444322     2588999999999 677776 47888888766554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.81  E-value=7.4e-07  Score=80.11  Aligned_cols=149  Identities=10%  Similarity=-0.038  Sum_probs=94.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec---C-CCCeEEEEEecCCCEEEEecC------CCeEEEEEc
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY---H-QGPVSALAFHPNGHLMATTGK------ECKIKIWDL  138 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~---h-~~~v~~l~~~p~g~~l~s~~~------d~~i~vwd~  138 (359)
                      .+.+++|+|++.++++. . ..|.+||+.+++.......   + ...+++++++|+|+++++...      .+.|+.+| 
T Consensus        91 ~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-  167 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-  167 (326)
T ss_dssp             CEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred             cceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence            57889999998876654 4 4599999988764332211   1 235889999999997776542      25666777 


Q ss_pred             CCCeeeEee--cCCceeEEEcCCC--cEEE-EcCCcEEEEcCC-CCC-ccc--cccccccCCCCcceeEEEEccCCCEEE
Q 040274          139 RKYEVLQTL--TGHAKTLDFSQKG--LLAV-GTGSFAQILGDF-SGS-HNY--SRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       139 ~~~~~~~~~--~~~v~~~~~s~~g--l~~~-~~d~~i~v~d~~-~~~-~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                       +++.....  ......++|+|+|  ++.+ +.++.|.+||+. ..+ ...  ..+..... ....+..++++++|.+.+
T Consensus       168 -~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          168 -KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             -TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEE
T ss_pred             -CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEE
Confidence             45543222  2346789999999  3333 346889999964 122 111  11211110 112567899999998777


Q ss_pred             EEeCCCeEEEEEc
Q 040274          210 IGHSMGWSGILVP  222 (359)
Q Consensus       210 ~g~~dg~~~i~~~  222 (359)
                      +...++.+.+|.+
T Consensus       246 a~~~~~~v~~~d~  258 (326)
T 2ghs_A          246 ARWGEGAVDRYDT  258 (326)
T ss_dssp             EEETTTEEEEECT
T ss_pred             EEeCCCEEEEECC
Confidence            7766676777765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.80  E-value=5e-07  Score=80.32  Aligned_cols=150  Identities=11%  Similarity=-0.034  Sum_probs=101.7

Q ss_pred             EEEeccceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCC
Q 040274           63 MAVAGRRTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY  141 (359)
Q Consensus        63 l~~~~~~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~  141 (359)
                      |+.+......+.|+|+++ +++++..++.|..|+. ++. ...+..+...+.+++++++|+++++...++.|.+||.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            444444677899999988 5666777899999998 454 44555667788999999999988777777899999986 5


Q ss_pred             eeeEee---c----CCceeEEEcCCC-cEEE-----Ec-------------CCcEEEEcCCCCCccccccccccCCCCcc
Q 040274          142 EVLQTL---T----GHAKTLDFSQKG-LLAV-----GT-------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQ  195 (359)
Q Consensus       142 ~~~~~~---~----~~v~~~~~s~~g-l~~~-----~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  195 (359)
                      ......   .    ..+++++++|+| ++.+     ..             .+.|..||...+ ...... .. .    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~~-~~-~----~  189 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMA-DL-D----H  189 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEEE-EE-S----S
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEEe-cC-C----C
Confidence            432211   1    236789999999 5543     11             246777875333 222222 22 1    4


Q ss_pred             eeEEEEccCCCEEEEEeCC------CeEEEEEc
Q 040274          196 IGKVSFRPYEDVLGIGHSM------GWSGILVP  222 (359)
Q Consensus       196 v~~~~~sp~~~~l~~g~~d------g~~~i~~~  222 (359)
                      ...++|+|+++.|+++...      +.+.+|..
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            6789999999988877665      45555543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.75  E-value=3.6e-07  Score=90.92  Aligned_cols=160  Identities=10%  Similarity=0.007  Sum_probs=102.3

Q ss_pred             eEEEECCCCCEEEEecc-------------------------c--eeEEEEcCCCCEEEEEeCCC-------------eE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------R--TDLMRVNPFNGVVSLGHSGG-------------TV   91 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~--v~~l~~sp~~~~l~tg~~dg-------------~v   91 (359)
                      ..++|||||++||.+..                         .  ...++|+ |++.|+.++.+.             .|
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v  210 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKV  210 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEE
Confidence            56789999999996432                         2  3678999 999999888774             39


Q ss_pred             EEEeCCCCcc--eEEee--c-CCCCeEEEEEecCCCEEEEecC----CCeEEEEEcCCCe-eeEee---cCCceeEEEcC
Q 040274           92 TMWKPTTSAL--LIKML--Y-HQGPVSALAFHPNGHLMATTGK----ECKIKIWDLRKYE-VLQTL---TGHAKTLDFSQ  158 (359)
Q Consensus        92 ~lwd~~~~~~--~~~~~--~-h~~~v~~l~~~p~g~~l~s~~~----d~~i~vwd~~~~~-~~~~~---~~~v~~~~~s~  158 (359)
                      ++|++.++..  ...+.  . |...+.++.|+|||++|+....    +..|++||+.++. ....+   ....... |++
T Consensus       211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~  289 (693)
T 3iuj_A          211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN  289 (693)
T ss_dssp             EEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE
T ss_pred             EEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec
Confidence            9999987653  22222  3 4456789999999998754332    3589999998763 23333   2223333 666


Q ss_pred             CC--cEEEEc-C---CcEEEEcCCCCCc-cccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEEE
Q 040274          159 KG--LLAVGT-G---SFAQILGDFSGSH-NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSGI  219 (359)
Q Consensus       159 ~g--l~~~~~-d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~i  219 (359)
                      +|  ++..+. +   +.|.++|+..+.. ....+..+..    .+.  .|+|++++|+.... +|...|
T Consensus       290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEE
Confidence            66  444443 2   5788898655422 1223333321    343  89999998876654 444333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.73  E-value=1e-06  Score=80.68  Aligned_cols=153  Identities=7%  Similarity=-0.063  Sum_probs=100.8

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecCC-------CCeEEEEEecCCCEEEEecC--CCe
Q 040274           72 LMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYHQ-------GPVSALAFHPNGHLMATTGK--ECK  132 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h~-------~~v~~l~~~p~g~~l~s~~~--d~~  132 (359)
                      .++++|+++++++++          .++.|.+||+.+.+.+..+....       ..-..+.|+|||++++.++.  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999887765          36789999999999888775321       23567999999999888764  689


Q ss_pred             EEEEEcCCCeeeEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcce-eEEEEc-cCCCE
Q 040274          133 IKIWDLRKYEVLQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQI-GKVSFR-PYEDV  207 (359)
Q Consensus       133 i~vwd~~~~~~~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-p~~~~  207 (359)
                      |.++|+.+++.+.+++-+- |..+.|.|   +++.+.||.+.+.++...+........+......++ ....|. ++|++
T Consensus       162 VsVID~~t~~vv~tI~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~  240 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  240 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEECCCCcEEEEEECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence            9999999999998884321 22233444   678888888888886543333211111100011122 234664 67765


Q ss_pred             EEEEeCCCeEEEEEcCCCC
Q 040274          208 LGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       208 l~~g~~dg~~~i~~~gs~~  226 (359)
                      ++ .+.+|.+.++...++.
T Consensus       241 ~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          241 VW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EE-EBTTSEEEEEECTTSS
T ss_pred             EE-EeCCCEEEEEECCCCc
Confidence            54 5557888877765544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.73  E-value=5.4e-07  Score=83.78  Aligned_cols=150  Identities=8%  Similarity=-0.065  Sum_probs=100.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC--eEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC--KIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~--~i~vwd~~~~~~~~~  146 (359)
                      ....|+|++++.++++...++.|++||+.++........ ..... ++|+|++..|++++.++  .|.+||...+.....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            678999999998777777789999999988765544433 23334 99999999988888766  799999876543333


Q ss_pred             e-------cCCceeEEEcC-CC-cEEEEcCCcEEEEcCCCCCcccccccc--ccCCCCcc-eeEEEEccC-CCEEEEEeC
Q 040274          147 L-------TGHAKTLDFSQ-KG-LLAVGTGSFAQILGDFSGSHNYSRYMG--NSMVKGYQ-IGKVSFRPY-EDVLGIGHS  213 (359)
Q Consensus       147 ~-------~~~v~~~~~s~-~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~-v~~~~~sp~-~~~l~~g~~  213 (359)
                      +       ...+.+++++| +| ++.+..++.|..||.....  ...+..  .....+.. ...++|+|+ +.++++...
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            2       24578999999 66 6666667889999965442  222200  10001111 138999995 555555556


Q ss_pred             CCeEEEEEc
Q 040274          214 MGWSGILVP  222 (359)
Q Consensus       214 dg~~~i~~~  222 (359)
                      ++.+..|..
T Consensus       288 ~~~I~~~~~  296 (409)
T 3hrp_A          288 LSSVYKITP  296 (409)
T ss_dssp             TTEEEEECT
T ss_pred             CCEEEEEec
Confidence            676666643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.72  E-value=8.1e-07  Score=86.00  Aligned_cols=142  Identities=11%  Similarity=0.059  Sum_probs=98.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcC--CCeeeEeec--CCce
Q 040274           77 PFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLR--KYEVLQTLT--GHAK  152 (359)
Q Consensus        77 p~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~v~  152 (359)
                      |.+.++++...++.|.+||+.+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+.++.  ....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence            4455677777899999999999998888764 3456799999999999999999999999996  777777773  3467


Q ss_pred             eEEEc----CCC--cEE-EEcCCcEEEEcCCCCCccccccccccC-------CCCcceeEEEEccCCCEEEE-EeCCCeE
Q 040274          153 TLDFS----QKG--LLA-VGTGSFAQILGDFSGSHNYSRYMGNSM-------VKGYQIGKVSFRPYEDVLGI-GHSMGWS  217 (359)
Q Consensus       153 ~~~~s----~~g--l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~-g~~dg~~  217 (359)
                      .++||    |+|  +++ .-.++.|.|||..+. +.+..+.....       .+...+..+.+++++..+++ ...+|.+
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            89999    699  333 335699999996543 33333321110       01225777888887654433 3334544


Q ss_pred             EEE
Q 040274          218 GIL  220 (359)
Q Consensus       218 ~i~  220 (359)
                      .++
T Consensus       323 ~~v  325 (567)
T 1qks_A          323 LLV  325 (567)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.72  E-value=4.2e-07  Score=83.14  Aligned_cols=107  Identities=8%  Similarity=-0.005  Sum_probs=81.0

Q ss_pred             cCCCCEEEEEeC-----CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec----------CCCeEEEEEcCC
Q 040274           76 NPFNGVVSLGHS-----GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG----------KECKIKIWDLRK  140 (359)
Q Consensus        76 sp~~~~l~tg~~-----dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~----------~d~~i~vwd~~~  140 (359)
                      .|++..+++...     ++.|.++|+.+++.+..+.....+ . +.++|||+++++++          .++.|.+||..+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            456666555543     579999999999999888765565 4 99999999887775          367899999999


Q ss_pred             CeeeEeec--C--------CceeEEEcCCC--cEEEEc--CCcEEEEcCCCCCcccccc
Q 040274          141 YEVLQTLT--G--------HAKTLDFSQKG--LLAVGT--GSFAQILGDFSGSHNYSRY  185 (359)
Q Consensus       141 ~~~~~~~~--~--------~v~~~~~s~~g--l~~~~~--d~~i~v~d~~~~~~~~~~~  185 (359)
                      ++.+.++.  .        ....+.|+|||  ++++..  ++.|.++|+.+. .....+
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI  176 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRML  176 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEE
Confidence            99888772  1        46789999999  444443  589999997654 444444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.70  E-value=1.1e-06  Score=79.45  Aligned_cols=167  Identities=12%  Similarity=0.040  Sum_probs=110.8

Q ss_pred             eEEEECCCCCEEEEec-------c------------------------ceeEEEEcCCCCEEEEEeC-----CCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAG-------R------------------------RTDLMRVNPFNGVVSLGHS-----GGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~-------~------------------------~v~~l~~sp~~~~l~tg~~-----dg~v~lwd   95 (359)
                      ..++++|+|+.+++..       .                        .+.++++++++.++++-..     ++.|.+||
T Consensus        20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d   99 (343)
T 2qe8_A           20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWD   99 (343)
T ss_dssp             EEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEE
T ss_pred             ceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEE
Confidence            6788888888877742       1                        4678899998876665443     57899999


Q ss_pred             CCCCcceEEeecC------CCCeEEEEEecCCCE-EEEec---CCCeEEEEEcCCCeeeEeecC----------------
Q 040274           96 PTTSALLIKMLYH------QGPVSALAFHPNGHL-MATTG---KECKIKIWDLRKYEVLQTLTG----------------  149 (359)
Q Consensus        96 ~~~~~~~~~~~~h------~~~v~~l~~~p~g~~-l~s~~---~d~~i~vwd~~~~~~~~~~~~----------------  149 (359)
                      +.+++.+..+..+      ...++.++++|++.. +++..   .++.|.+||+.+++....+.+                
T Consensus       100 ~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~  179 (343)
T 2qe8_A          100 TLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV  179 (343)
T ss_dssp             TTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred             CCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence            9998866665432      235689999986444 45544   678999999987765443311                


Q ss_pred             ----------------CceeEEEcCCC--cEEEEcCC-cEEEEcCC--CCCcc-----ccc--cccccCCCCcceeEEEE
Q 040274          150 ----------------HAKTLDFSQKG--LLAVGTGS-FAQILGDF--SGSHN-----YSR--YMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       150 ----------------~v~~~~~s~~g--l~~~~~d~-~i~v~d~~--~~~~~-----~~~--~~~~~~~~~~~v~~~~~  201 (359)
                                      .+..++|+|+|  ++.+...+ .+..++..  .....     ...  ..++..    ....+++
T Consensus       180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g----~pdgia~  255 (343)
T 2qe8_A          180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP----ICDGISI  255 (343)
T ss_dssp             ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC----SCSCEEE
T ss_pred             EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC----CCceEEE
Confidence                            24779999999  55555444 55555421  01000     000  111211    4567899


Q ss_pred             ccCCCEEEEEeCCCeEEEEEc
Q 040274          202 RPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +++|.++++...++.+.+|.+
T Consensus       256 d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEET
T ss_pred             CCCCCEEEEccCCCeEEEEEC
Confidence            999999999888898888887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.63  E-value=1.7e-08  Score=92.62  Aligned_cols=138  Identities=12%  Similarity=0.088  Sum_probs=79.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC----c-e
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH----A-K  152 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----v-~  152 (359)
                      ++..+++++.||.|..||..+|+.+..+..  +.+.+..+.+++..+++++.|+.|+.||..+++.+..+..+    + .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577999999999999999999999988876  55555556677878888899999999999999877666322    1 1


Q ss_pred             eEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          153 TLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       153 ~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      +..++.++ +++++.++.|..||..++ .....+..+.        ...++|++..|++++.++.+..|...++.
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~--------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF--------ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC--------cccccccCCEEEEEecCCEEEEEECCCCC
Confidence            22222355 777788899999997655 3333333221        13456788888888888887777655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.61  E-value=3.4e-06  Score=78.40  Aligned_cols=150  Identities=11%  Similarity=0.052  Sum_probs=92.9

Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEeecCCC-------CeEEEEEecCC---------------------
Q 040274           72 LMRVNPFNGVVSLGHS--GGTVTMWKPTTSALLIKMLYHQG-------PVSALAFHPNG---------------------  121 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~--dg~v~lwd~~~~~~~~~~~~h~~-------~v~~l~~~p~g---------------------  121 (359)
                      .+.|+|||+++++++.  ++.|.+.|+.+++.+..+.....       .-..++++++|                     
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            5789999999998874  57899999999887766543110       00112333333                     


Q ss_pred             ----------------CEEEEecCCCeEEEEEcCCCee--eEee-------------cCCceeEEEcCCC--cEEE-Ec-
Q 040274          122 ----------------HLMATTGKECKIKIWDLRKYEV--LQTL-------------TGHAKTLDFSQKG--LLAV-GT-  166 (359)
Q Consensus       122 ----------------~~l~s~~~d~~i~vwd~~~~~~--~~~~-------------~~~v~~~~~s~~g--l~~~-~~-  166 (359)
                                      ..++..+..+.|.+.|+.....  +..+             +.....++++|+|  +++. .. 
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence                            3333334445566666643321  1111             1122347899998  3333 21 


Q ss_pred             --------CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEe-CCCeEEEEEcCCCCC
Q 040274          167 --------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSGILVPRSSEP  227 (359)
Q Consensus       167 --------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~-~dg~~~i~~~gs~~~  227 (359)
                              ++.|.++|+.+. +.+..+....     ...++.|+|||+ .++++. .++.+.++...++.-
T Consensus       341 ~~gthk~~s~~VsVID~~T~-kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETG-ERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ccccccCCCCEEEEEECCCC-eEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence                    357999996554 4555554332     488999999999 888888 589899988766543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.56  E-value=8.1e-06  Score=70.75  Aligned_cols=154  Identities=8%  Similarity=-0.019  Sum_probs=98.9

Q ss_pred             eeEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEeecCCC-CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           70 TDLMRVNPFNGVVSLGHS--GGTVTMWKPTTSALLIKMLYHQG-PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~--dg~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      ...|.|+|++.++++.+.  ++.|.++|+.+++.+..+..... ....++++. +.+.++.-.++.+.++|..+++.+.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence            468999998644444433  57999999999998887653222 223455542 23445555689999999999999988


Q ss_pred             ecCC-ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccc-cCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          147 LTGH-AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGN-SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       147 ~~~~-v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ++.. .....+++||  ++.+..++.|.++|..+. .....+.-. ...+-..++.+.|. +|...+....++.+.++.+
T Consensus       102 i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          102 FTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EECCSSSCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             EECCCCCeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence            8432 3334456677  555556789999996554 333332211 00011136678887 6755555556788888888


Q ss_pred             CCCC
Q 040274          223 RSSE  226 (359)
Q Consensus       223 gs~~  226 (359)
                      .++.
T Consensus       180 ~tg~  183 (266)
T 2iwa_A          180 KDGT  183 (266)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            7765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.55  E-value=6.3e-07  Score=89.14  Aligned_cols=138  Identities=7%  Similarity=-0.008  Sum_probs=88.5

Q ss_pred             ceeEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC------------
Q 040274           69 RTDLMRVNPFNGVVSLGHS-----GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC------------  131 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-----dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~------------  131 (359)
                      .+..++|||||++|+.+..     +..|++||+.+++.+... .+.....+++|+ ||+.|+.++.+.            
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            4778899999998886432     247999999999865431 111113578999 999998887774            


Q ss_pred             -eEEEEEcCCCe----eeEeecC----CceeEEEcCCC--c-EEEEc---CCcEEEEcCCCCCccccccccccCCCCcce
Q 040274          132 -KIKIWDLRKYE----VLQTLTG----HAKTLDFSQKG--L-LAVGT---GSFAQILGDFSGSHNYSRYMGNSMVKGYQI  196 (359)
Q Consensus       132 -~i~vwd~~~~~----~~~~~~~----~v~~~~~s~~g--l-~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v  196 (359)
                       .|++|++.+..    ++.....    ...++.|||||  + ++.+.   .+.|+++|+..+......+..+..    ..
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~----~~  283 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD----AD  283 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS----SC
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC----ce
Confidence             49999998754    2333333    25788999999  3 33332   258999996554323334433321    23


Q ss_pred             eEEEEccCCCEEEEEeC
Q 040274          197 GKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~~  213 (359)
                      ... |+++|..|+..+.
T Consensus       284 ~~~-~~~~g~~l~~~t~  299 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTN  299 (693)
T ss_dssp             EEE-EEEETTEEEEEEC
T ss_pred             EEE-EeccCCEEEEEEC
Confidence            333 6677766655443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.55  E-value=5.5e-06  Score=75.97  Aligned_cols=148  Identities=7%  Similarity=-0.133  Sum_probs=99.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecC-------CCCeEEEEEecCCCEEEEecC--CCe
Q 040274           72 LMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYH-------QGPVSALAFHPNGHLMATTGK--ECK  132 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h-------~~~v~~l~~~p~g~~l~s~~~--d~~  132 (359)
                      .+++|||+++++++.          .++.|.+||+.+.+.+..+...       ...-..+.|+|||++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999988886          3678999999988877765432       123457899999999998874  578


Q ss_pred             EEEEEcCCCeeeEe-ecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccccccc---ccCCCCcceeEEEEccCC
Q 040274          133 IKIWDLRKYEVLQT-LTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMG---NSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       133 i~vwd~~~~~~~~~-~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~  205 (359)
                      |.++| .+++.+.. ++.+ .++.+.|++   +++.+.||.+.++|. .+ ........   ... .........|.+++
T Consensus       150 v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~-~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTA-AQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccC-CcceeecceeEecC
Confidence            99999 99998888 6432 235555665   677778999999997 44 22211110   000 01112345677776


Q ss_pred             CEEEEEeCCCeEEEEEcCC
Q 040274          206 DVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       206 ~~l~~g~~dg~~~i~~~gs  224 (359)
                      ..++..+..+.+.++...+
T Consensus       225 ~~~~~~~~~~~v~vid~~~  243 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISA  243 (373)
T ss_pred             CEEEEEcCCceEEEEeccC
Confidence            6655555667666666543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=2.7e-06  Score=76.94  Aligned_cols=145  Identities=10%  Similarity=0.046  Sum_probs=95.7

Q ss_pred             ceeEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEee-------cCCCCeEEEEEecCCCEEEEecC-----CCeEE
Q 040274           69 RTDLMRVNPFNGVVSLGH--SGGTVTMWKPTTSALLIKML-------YHQGPVSALAFHPNGHLMATTGK-----ECKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~--~dg~v~lwd~~~~~~~~~~~-------~h~~~v~~l~~~p~g~~l~s~~~-----d~~i~  134 (359)
                      .+..++++|+|.++++..  .++.++||.+.++. +..+.       .|...+.+++++++|+++++-..     ++.|.
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            578999999999988864  23435556554443 22221       34567999999999987666443     57899


Q ss_pred             EEEcCCCeeeEeec---------CCceeEEEcCC-C--cEEEE---cCCcEEEEcCCCCCccccccccccC---------
Q 040274          135 IWDLRKYEVLQTLT---------GHAKTLDFSQK-G--LLAVG---TGSFAQILGDFSGSHNYSRYMGNSM---------  190 (359)
Q Consensus       135 vwd~~~~~~~~~~~---------~~v~~~~~s~~-g--l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~---------  190 (359)
                      +||+.+++.+..+.         ..+..++++++ |  +++-.   .++.|.+||+..+ .....+..|..         
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccccee
Confidence            99999998776662         13588999986 4  44444   5689999996543 22222211100         


Q ss_pred             ----------C------CCcceeEEEEccCCCEEEEEeCCC
Q 040274          191 ----------V------KGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       191 ----------~------~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                                .      ....+..++|+|+|++|+++...+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence                      0      001368899999999888877665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=4.1e-06  Score=77.52  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=98.0

Q ss_pred             EEEcCCCCEEEEEeCC------CeEEEEeCCCCcceEEeecCCC---CeEEEEEecCCCEEEEec---------------
Q 040274           73 MRVNPFNGVVSLGHSG------GTVTMWKPTTSALLIKMLYHQG---PVSALAFHPNGHLMATTG---------------  128 (359)
Q Consensus        73 l~~sp~~~~l~tg~~d------g~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~p~g~~l~s~~---------------  128 (359)
                      +..+|+| +++++..+      |.|.++|..+.+.+..+....+   .-+.+.|+|+++.|+++.               
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            4567888 76666555      7899999999998888763222   234588899999999885               


Q ss_pred             ----CCCeEEEEEcCCCeeeEeecC-----CceeEEE--cCCC---cEEEE-----cCCcEEEEcCCCCCc-cccc--cc
Q 040274          129 ----KECKIKIWDLRKYEVLQTLTG-----HAKTLDF--SQKG---LLAVG-----TGSFAQILGDFSGSH-NYSR--YM  186 (359)
Q Consensus       129 ----~d~~i~vwd~~~~~~~~~~~~-----~v~~~~~--s~~g---l~~~~-----~d~~i~v~d~~~~~~-~~~~--~~  186 (359)
                          .+..|.+||+.+++.+.++.-     ....+.|  +|+|   ++++.     .+++|.+|....+.. ....  +.
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence                368899999999888888732     2344545  9999   55555     667887654221100 0000  00


Q ss_pred             cc----cC---C-----CCcceeEEEEccCCCEEEEEeC-CCeEEEEEc
Q 040274          187 GN----SM---V-----KGYQIGKVSFRPYEDVLGIGHS-MGWSGILVP  222 (359)
Q Consensus       187 ~~----~~---~-----~~~~v~~~~~sp~~~~l~~g~~-dg~~~i~~~  222 (359)
                      ..    ..   .     .+.....+.+||||++|.++.. .+.+.+|..
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            00    00   0     0135788999999999988776 456666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.50  E-value=5.7e-06  Score=71.75  Aligned_cols=163  Identities=6%  Similarity=0.027  Sum_probs=103.9

Q ss_pred             eEEEECCCCCEEEEecc------------------------c--eeEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------R--TDLMRVNPFNGVVSL-GHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~--v~~l~~sp~~~~l~t-g~~dg~v~lwd~~~~~~~~~  104 (359)
                      ..|.|++||...++.+.                        .  ...++++  +..|+. .-.++.|.++|+.+.+.+..
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            47899998866665442                        1  1223333  444444 44678999999999998888


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---C-----CceeEEEcCCC-cEEEE-cCCcEEEEc
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---G-----HAKTLDFSQKG-LLAVG-TGSFAQILG  174 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~-----~v~~~~~s~~g-l~~~~-~d~~i~v~d  174 (359)
                      +......  ...+++||..++++..++.|.++|..+.+.+..+.   .     .++.+.|. +| +++.. .++.|.+.|
T Consensus       102 i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          102 FTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             EECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            7633122  23455677777777778999999999988877772   1     25678888 77 55555 468999999


Q ss_pred             CCCCCccccccccc---------cCCCCcceeEEEEccCCCEEEE-EeCCCeEEEE
Q 040274          175 DFSGSHNYSRYMGN---------SMVKGYQIGKVSFRPYEDVLGI-GHSMGWSGIL  220 (359)
Q Consensus       175 ~~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~-g~~dg~~~i~  220 (359)
                      +.++ .....+...         ........+.++|+|+++.|++ +...+.+..+
T Consensus       179 ~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          179 AKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             TTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             CCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            7655 444333211         0001124689999999875544 4345544443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.42  E-value=1.3e-05  Score=74.13  Aligned_cols=141  Identities=9%  Similarity=-0.047  Sum_probs=90.8

Q ss_pred             EEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCcceEEeecC-C-CCeEEEEE--ecCCCEEEEec
Q 040274           72 LMRVNPFNGVVSLGH-------------------SGGTVTMWKPTTSALLIKMLYH-Q-GPVSALAF--HPNGHLMATTG  128 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~-------------------~dg~v~lwd~~~~~~~~~~~~h-~-~~v~~l~~--~p~g~~l~s~~  128 (359)
                      .+.|+|+++.+++..                   .+..|.+||+.+++.+.++... . .....+.|  +|+++++++++
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence            377899999888874                   3689999999998877777642 1 23345555  99999877766


Q ss_pred             ------CCCeEEEEEcCCCe--eeEee---------------------cCCceeEEEcCCC--cEEEE-cCCcEEEEcCC
Q 040274          129 ------KECKIKIWDLRKYE--VLQTL---------------------TGHAKTLDFSQKG--LLAVG-TGSFAQILGDF  176 (359)
Q Consensus       129 ------~d~~i~vwd~~~~~--~~~~~---------------------~~~v~~~~~s~~g--l~~~~-~d~~i~v~d~~  176 (359)
                            .+++|.+|....+.  ....+                     ...+..|.+|+||  ++++. ..+.|.+||+.
T Consensus       272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                  56788876654432  11111                     1236789999999  33333 35899999975


Q ss_pred             CCCc--ccccccccc---------C-CCCcceeEEEEccCCCEEEEEe
Q 040274          177 SGSH--NYSRYMGNS---------M-VKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       177 ~~~~--~~~~~~~~~---------~-~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      ....  ....+....         + ........+.++|||++|+++.
T Consensus       352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3321  111111110         0 0001257799999999999887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.41  E-value=5.8e-06  Score=76.85  Aligned_cols=149  Identities=8%  Similarity=-0.072  Sum_probs=102.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecC-------CCCeEEEEEecCCCEEEEecC--CCe
Q 040274           72 LMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYH-------QGPVSALAFHPNGHLMATTGK--ECK  132 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h-------~~~v~~l~~~p~g~~l~s~~~--d~~  132 (359)
                      .+.++||++++++++          .++.|.++|+.+.+.+..+...       ......+.|+|||++|+.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888776          3678999999999888776531       123467899999999988864  578


Q ss_pred             EEEEEcCCCeeeEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcccc----ccccccCCCCcceeEEEEccCC
Q 040274          133 IKIWDLRKYEVLQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYS----RYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       133 i~vwd~~~~~~~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      |.+.|+.+++.+.++.-.- +....|+|   +++.+.||.+.+.+. .......    .+....   ......+.|.+++
T Consensus       202 VsVID~~t~kvv~~I~v~g-~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~---~p~~~~~~~~~dg  276 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPD-CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTED---ELLINHPAFSLRS  276 (426)
T ss_dssp             EEEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTT---SCBCSCCEECTTT
T ss_pred             EEEEECCCCeEEEEEEcCC-ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCC---CceeeEeeecCCC
Confidence            9999999999988884321 13344544   666777787777775 3322221    111110   0112345789998


Q ss_pred             CEEEEEeCCCeEEEEEcCCC
Q 040274          206 DVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       206 ~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ..++..+..+.+.++...+.
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSS
T ss_pred             CEEEEEeCCCcEEEEeccCC
Confidence            88877778887777776443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.40  E-value=1.4e-05  Score=68.69  Aligned_cols=160  Identities=6%  Similarity=-0.029  Sum_probs=99.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cCCCeEEEEEcCCCeeeEe
Q 040274           70 TDLMRVNPFNGVVSLGHSGG--TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d~~i~vwd~~~~~~~~~  146 (359)
                      ...|.|+ ++.++.+++.+|  .|+++|+.+++.+..+.... ........+++..|+.+ -.++.+.+||..+++.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4568888 566666666666  89999999999888876433 34443333445555444 4588999999999999998


Q ss_pred             ecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccccc-CCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          147 LTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNS-MVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       147 ~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      ++-......++++|  ++.+..++.|.++|..+. .....+.-.. +.+-..++.+.|. +|...+....++.+.++.+.
T Consensus       123 i~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~  200 (262)
T 3nol_A          123 FNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE  200 (262)
T ss_dssp             EECSSCCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred             EECCCCceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence            84332323333455  555555678999996554 3333322210 0011134557776 67666555567788888876


Q ss_pred             CCCCceeeecc
Q 040274          224 SSEPNFDSWVA  234 (359)
Q Consensus       224 s~~~~~~~~~~  234 (359)
                      ++. .+..+++
T Consensus       201 tG~-V~~~Id~  210 (262)
T 3nol_A          201 TGK-VTGIIDL  210 (262)
T ss_dssp             TCB-EEEEEEC
T ss_pred             CCc-EEEEEEC
Confidence            654 3344444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.39  E-value=3.8e-08  Score=90.31  Aligned_cols=148  Identities=11%  Similarity=-0.071  Sum_probs=71.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCC-eE-EEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP-VS-ALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~-v~-~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      +.+..+.+++..+++++.||.|+.||..+++.+..+..+... +. +..+. ++..+++++.|+.|+.||..+|+.+..+
T Consensus        40 ~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           40 VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------
T ss_pred             ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence            334444556667778889999999999999887766543211 10 11111 3456788888999999999999988777


Q ss_pred             cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC---CEEEEEeCCCeEEEEEc
Q 040274          148 TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE---DVLGIGHSMGWSGILVP  222 (359)
Q Consensus       148 ~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~g~~dg~~~i~~~  222 (359)
                      ..+- ...++|++  +++++.++.|..||..++. ..-.+...      ......++++.   ..+++++.+|.+..|..
T Consensus       119 ~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~~~------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          119 SSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRE-LRWNATYF------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             ---------------EEEEEEEEEEECCCSSSSS-CCCEEEEE------EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             cCCC-cccccccCCEEEEEecCCEEEEEECCCCC-EEEeEecc------cccCccccCCccccceEEEECCCCEEEEEEC
Confidence            4321 23456665  7778888999999976653 32222211      11222333332   45677888888877766


Q ss_pred             CCCC
Q 040274          223 RSSE  226 (359)
Q Consensus       223 gs~~  226 (359)
                      .++.
T Consensus       191 ~tG~  194 (369)
T 2hz6_A          191 ESGD  194 (369)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            5443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.37  E-value=1.1e-05  Score=69.33  Aligned_cols=155  Identities=12%  Similarity=-0.076  Sum_probs=98.9

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEE--EEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSA--LAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~--l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      ...|.|+. +.++.+.+.+|.|+++|+.+++.+..+ . ......  +++.. +.+.+..-.++.+.+||..+++.+.++
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            45677773 556677778889999999999988877 3 233334  55443 234444556899999999999999988


Q ss_pred             cC--CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccc--ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          148 TG--HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMG--NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       148 ~~--~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +.  .-+.++  ++|  ++.+..++.|.++|..+. .....+.-  ... .-..++.+.|. +|...+....+..+.++.
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~-~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQ-PVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTE-ECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCc-ccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            43  334555  445  555556889999996554 33333222  111 11135667776 776555555677788887


Q ss_pred             cCCCCCceeeecc
Q 040274          222 PRSSEPNFDSWVA  234 (359)
Q Consensus       222 ~gs~~~~~~~~~~  234 (359)
                      +.++. .+..+++
T Consensus       208 p~TG~-V~~~Idl  219 (268)
T 3nok_A          208 PATGT-VVGVIDA  219 (268)
T ss_dssp             TTTCB-EEEEEEC
T ss_pred             CCCCc-EEEEEEC
Confidence            76654 3344443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.35  E-value=1e-05  Score=77.45  Aligned_cols=154  Identities=11%  Similarity=-0.006  Sum_probs=103.3

Q ss_pred             ceeEEEE-c-CCCCEEEEEe------------------CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec
Q 040274           69 RTDLMRV-N-PFNGVVSLGH------------------SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG  128 (359)
Q Consensus        69 ~v~~l~~-s-p~~~~l~tg~------------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~  128 (359)
                      ....+++ + |++.++++++                  .++.|.++|..+.+.+..+.-.. .-..++++|+|+++++++
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            4678887 5 8999988884                  34579999999988887776322 346678999999988877


Q ss_pred             CCC--------------------------------------eEEEEEcCC--Cee-eEee--cCCceeEEEcCCC-cEEE
Q 040274          129 KEC--------------------------------------KIKIWDLRK--YEV-LQTL--TGHAKTLDFSQKG-LLAV  164 (359)
Q Consensus       129 ~d~--------------------------------------~i~vwd~~~--~~~-~~~~--~~~v~~~~~s~~g-l~~~  164 (359)
                      .+.                                      .|.|.|..+  +.. +..+  .....++.++||| ++.+
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence            443                                      377777777  544 4455  3457899999999 3333


Q ss_pred             --EcCCcEEEEcCCCCCc-------cccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          165 --GTGSFAQILGDFSGSH-------NYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       165 --~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                        ..+++|.++|+.....       ......... ..+.....++|+|+|...++..-++.+.+|....
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence              3468999999753210       000111111 1344688999999994445555677777776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.33  E-value=6.3e-06  Score=75.23  Aligned_cols=68  Identities=9%  Similarity=-0.029  Sum_probs=54.0

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecC-------CCCeEEEEEecCCCEEEEecC--CCe
Q 040274           72 LMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYH-------QGPVSALAFHPNGHLMATTGK--ECK  132 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h-------~~~v~~l~~~p~g~~l~s~~~--d~~  132 (359)
                      .+.++||+..++++.          .+++|.+||+.+++.+..+..+       ......++|+|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888886          3688999999999999888643       123567999999999888764  356


Q ss_pred             EEE--EEcC
Q 040274          133 IKI--WDLR  139 (359)
Q Consensus       133 i~v--wd~~  139 (359)
                      |.+  +|+.
T Consensus       149 v~V~~iD~~  157 (368)
T 1mda_H          149 AGLSVPGAS  157 (368)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEEEchh
Confidence            777  7763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.30  E-value=4e-06  Score=80.19  Aligned_cols=141  Identities=10%  Similarity=0.004  Sum_probs=92.7

Q ss_pred             eEEEEcCCCCEEEEEeCCC--------------------------------------eEEEEeCCC--Ccc-eEEeecCC
Q 040274           71 DLMRVNPFNGVVSLGHSGG--------------------------------------TVTMWKPTT--SAL-LIKMLYHQ  109 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg--------------------------------------~v~lwd~~~--~~~-~~~~~~h~  109 (359)
                      ..++++|+|+++++.+.+.                                      .|.+.|..+  +.. +..+.. .
T Consensus       198 d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g  276 (595)
T 1fwx_A          198 DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-A  276 (595)
T ss_dssp             CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-E
T ss_pred             cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-C
Confidence            5688999999988888553                                      377777776  444 344433 2


Q ss_pred             CCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCe------------eeEee--cCCceeEEEcCCC--cEEEEcCCcEEE
Q 040274          110 GPVSALAFHPNGHLMATTG-KECKIKIWDLRKYE------------VLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQI  172 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~------------~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v  172 (359)
                      ....++.++|||+++++++ .+.+|.++|+.+.+            .+..+  ......++|+|+|  +++.-.++.|.+
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVK  356 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEE
Confidence            3457899999999876655 68899999999653            23333  2346889999999  445556899999


Q ss_pred             EcCCCC---------CccccccccccCCCC--cceeEEEEccCCCEEEEEeC
Q 040274          173 LGDFSG---------SHNYSRYMGNSMVKG--YQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       173 ~d~~~~---------~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~g~~  213 (359)
                      ||+...         ...+..+..|.. ++  ..-..+.++|||++|+++..
T Consensus       357 wdi~~a~~~~~g~~~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          357 WNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EEhhHhhhhhcccccceeEEEeecccc-cccceeccceEeCCCCCEEEEcCC
Confidence            996441         122333333311 00  01123356899999998765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.26  E-value=6.2e-05  Score=64.64  Aligned_cols=132  Identities=10%  Similarity=0.067  Sum_probs=86.5

Q ss_pred             CCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec-------
Q 040274           77 PFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-------  148 (359)
Q Consensus        77 p~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-------  148 (359)
                      +++..|+.. ..++.+.+||+.+.+.+.++....   ....+++++..|+.+..++.|.++|..+.+.+.++.       
T Consensus        94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~  170 (262)
T 3nol_A           94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE  170 (262)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred             EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence            334444444 458899999999999998887432   223334567777776668899999999998877762       


Q ss_pred             -CCceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCccccccccc--------cCCCCcceeEEEEccCCCEEEEEeC
Q 040274          149 -GHAKTLDFSQKG-LLAVG-TGSFAQILGDFSGSHNYSRYMGN--------SMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       149 -~~v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                       ..++.+.|. +| +++.. .++.|.+.|..++ .....+...        ........+.++|+|+++.|++.+.
T Consensus       171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             123557776 67 55555 4689999996554 333322211        0012235688999999886665543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.25  E-value=0.00011  Score=62.59  Aligned_cols=157  Identities=8%  Similarity=-0.061  Sum_probs=97.5

Q ss_pred             eeEEEEcCCCCEEEEEeCC--CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEe
Q 040274           70 TDLMRVNPFNGVVSLGHSG--GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~d--g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      ...+.|++ +.++.+.+.+  ..|+++|+.+++.+..+..... .......+.+.. +...-.++.+.+||..+++.+.+
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            55788886 5555555554  4899999999998887764332 333333333444 44455689999999999999998


Q ss_pred             ecC--CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCcccccccc--ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          147 LTG--HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMG--NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       147 ~~~--~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ++.  .-..++  +++  ++.+..++.|.++|..+. .....+.-  +.. +-..++.+.|. +|...+....+..+.++
T Consensus       101 i~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~-~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          101 FRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGR-PLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTE-ECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCc-ccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            843  334454  455  555556789999996554 33332221  111 11135566665 66666555567778888


Q ss_pred             EcCCCCCceeeecc
Q 040274          221 VPRSSEPNFDSWVA  234 (359)
Q Consensus       221 ~~gs~~~~~~~~~~  234 (359)
                      .+.++. .+..+++
T Consensus       176 Dp~tG~-V~~~idl  188 (243)
T 3mbr_X          176 DPASGK-VVAWIDL  188 (243)
T ss_dssp             CTTTCB-EEEEEEC
T ss_pred             ECCCCC-EEEEEEC
Confidence            777664 3444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=7.7e-05  Score=74.76  Aligned_cols=165  Identities=10%  Similarity=0.028  Sum_probs=96.9

Q ss_pred             eEEEEC-CCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCC-----CeEEEEeCCC
Q 040274           52 ILWILP-SSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSG-----GTVTMWKPTT   98 (359)
Q Consensus        52 ~~l~~s-pdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~d-----g~v~lwd~~~   98 (359)
                      ..+.|| |||++|+.+..                           ....++|+|||+.|+....|     ..|+++++.+
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt  256 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK  256 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence            567999 99999985432                           12367899999888777665     2688888887


Q ss_pred             Ccce--EEee-cCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCe-ee--Eee----cCCceeEEEcCCC-cEEE
Q 040274           99 SALL--IKML-YHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYE-VL--QTL----TGHAKTLDFSQKG-LLAV  164 (359)
Q Consensus        99 ~~~~--~~~~-~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~-~~--~~~----~~~v~~~~~s~~g-l~~~  164 (359)
                      +...  ..+. .+.....++.|+|||++|+..+.   ...|+++|+.++. ..  ..+    .+...++.|+..+ ++..
T Consensus       257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~  336 (751)
T 2xe4_A          257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL  336 (751)
T ss_dssp             CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred             CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence            6432  3332 23345678899999998876553   3468899998752 12  333    2234555554444 4444


Q ss_pred             Ec-C----CcEEEEcCCCCCccccc-cccccCCCCcceeEEEEccCCCE-EEEEeCCCeEEEEE
Q 040274          165 GT-G----SFAQILGDFSGSHNYSR-YMGNSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSGILV  221 (359)
Q Consensus       165 ~~-d----~~i~v~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~-l~~g~~dg~~~i~~  221 (359)
                      +. +    ..|.++|+... ..... +..+.  ....+..+.+  +++. +++...+|...+++
T Consensus       337 t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~--~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          337 TNEGGAVNHKLLIAPRGQP-SDWSHVLVDHS--EDVFMESIAV--RSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             ECTTTCTTCEEEEEETTST-TCCCCEEECCC--SSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred             eCCCCCCCcEEEEEcCCCc-ccceeeEECCC--CCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence            43 2    25666775332 12222 22221  1113445554  4444 45566677766654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.18  E-value=0.00014  Score=64.46  Aligned_cols=152  Identities=12%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             eeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEeecC-----CC--CeEEEEE---ecCCCEEEEec----------
Q 040274           70 TDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKMLYH-----QG--PVSALAF---HPNGHLMATTG----------  128 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~h-----~~--~v~~l~~---~p~g~~l~s~~----------  128 (359)
                      .-+++|++....|+.++ ..|+|..||+..+........+     ..  .+.+|.|   .|++++++++.          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            46789998666666666 7899999999865433322221     11  3579999   68888877644          


Q ss_pred             ---CCCeEEEEEcC---CCeeeEeec------C----------CceeEEEcCCC--cEEEEcC-CcEEEEcCCCCCcccc
Q 040274          129 ---KECKIKIWDLR---KYEVLQTLT------G----------HAKTLDFSQKG--LLAVGTG-SFAQILGDFSGSHNYS  183 (359)
Q Consensus       129 ---~d~~i~vwd~~---~~~~~~~~~------~----------~v~~~~~s~~g--l~~~~~d-~~i~v~d~~~~~~~~~  183 (359)
                         .+..|..||+.   +++.+....      +          .+..++..++|  +++.+.. +.|..++. .+. ...
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-dG~-~~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-DGK-TVS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT-TSC-CEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC-CCC-EEe
Confidence               26779999999   777665441      2          36899999999  7778888 88888773 332 222


Q ss_pred             ccc-ccc-CCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          184 RYM-GNS-MVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       184 ~~~-~~~-~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      .+. ... .......+.++++|+|..|++....|.+..+...
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            221 110 0012236789999999998888777766665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.17  E-value=4.7e-05  Score=75.34  Aligned_cols=151  Identities=10%  Similarity=0.041  Sum_probs=103.4

Q ss_pred             eEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceEEeec--CC-------CCeEEEEEecCC-
Q 040274           71 DLMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTSALLIKMLY--HQ-------GPVSALAFHPNG-  121 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~dg-------------------~v~lwd~~~~~~~~~~~~--h~-------~~v~~l~~~p~g-  121 (359)
                      ..++++|++..++.++.++                   +|..+|+.+++.+..+..  |.       .....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578889888888887664                   599999999999888763  21       112223334477 


Q ss_pred             --CEEEEecCCCeEEEEEcCCCeeeEeec-CCc-------------------------------------eeEEEcCCC-
Q 040274          122 --HLMATTGKECKIKIWDLRKYEVLQTLT-GHA-------------------------------------KTLDFSQKG-  160 (359)
Q Consensus       122 --~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~v-------------------------------------~~~~~s~~g-  160 (359)
                        ..+++++.+|.|+++|..+|+.+..+. .++                                     ..++|+|++ 
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              689999999999999999999876652 110                                     156888876 


Q ss_pred             -cEEEEc-------------------------------------------CCcEEEEcCCCCCccccccccccCCCCcce
Q 040274          161 -LLAVGT-------------------------------------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQI  196 (359)
Q Consensus       161 -l~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v  196 (359)
                       +++...                                           .+.|..||+.++ +..-.+... .    .+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~-~----~~  479 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHV-S----PW  479 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEES-S----SC
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCCC-C----CC
Confidence             333322                                           167888996655 333232221 1    34


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 040274          197 GKVSFRPYEDVLGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~  227 (359)
                      ....+...+..+++++.+|.+.+|...+++.
T Consensus       480 ~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          480 NGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            4555677888999999999999988776654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.14  E-value=0.00066  Score=58.57  Aligned_cols=147  Identities=11%  Similarity=-0.059  Sum_probs=85.0

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~~~  144 (359)
                      ....++++|++..|+.+ ..++.|.++++........+.........++++|++..|+.+..   .+.|..+++.. ...
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~  158 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNR  158 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCC
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCc
Confidence            56789999976555554 45678999998754322222222245689999996555554443   46888888764 222


Q ss_pred             Eee----cCCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCe
Q 040274          145 QTL----TGHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGW  216 (359)
Q Consensus       145 ~~~----~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~  216 (359)
                      ..+    ......+++++++  + ++....+.|.++|+... .........     .....+++  ++..|+++. .++.
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~-----~~P~gi~~--d~~~lyva~~~~~~  230 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGL-----QYPFAVTS--YGKNLYYTDWKTNS  230 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECC-----CSEEEEEE--ETTEEEEEETTTTE
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCC-----CCceEEEE--eCCEEEEEECCCCe
Confidence            222    2346889999976  4 34444578999996432 211111111     12345554  345555444 4466


Q ss_pred             EEEEEcCC
Q 040274          217 SGILVPRS  224 (359)
Q Consensus       217 ~~i~~~gs  224 (359)
                      +.++.+.+
T Consensus       231 v~~~d~~~  238 (267)
T 1npe_A          231 VIAMDLAI  238 (267)
T ss_dssp             EEEEETTT
T ss_pred             EEEEeCCC
Confidence            66655543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.14  E-value=0.00033  Score=62.41  Aligned_cols=147  Identities=12%  Similarity=0.036  Sum_probs=85.0

Q ss_pred             eeEEEEcC-CCCEEEEEeC-----------------CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cCC
Q 040274           70 TDLMRVNP-FNGVVSLGHS-----------------GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKE  130 (359)
Q Consensus        70 v~~l~~sp-~~~~l~tg~~-----------------dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d  130 (359)
                      .+.+++.+ +|.+.++-..                 +|.|..||..++...... ......+.++|+|+|..|+.+ +..
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGG
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCC
Confidence            56788898 8876665432                 367888888766543222 222345679999999865554 566


Q ss_pred             CeEEEEEcCCC---e--eeEeecCCceeEEEcCCC-cEEEE-c----------CCcEEEEcCCCCCccccccccccCCCC
Q 040274          131 CKIKIWDLRKY---E--VLQTLTGHAKTLDFSQKG-LLAVG-T----------GSFAQILGDFSGSHNYSRYMGNSMVKG  193 (359)
Q Consensus       131 ~~i~vwd~~~~---~--~~~~~~~~v~~~~~s~~g-l~~~~-~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~  193 (359)
                      +.|.+||+...   .  .+..+.+ ...++++++| ++.+. .          .+.|..+|. .+ .....+....+...
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G-~~~~~~~~~~g~~~  283 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FG-NILEVIPLPPPFAG  283 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TS-CEEEEEECCTTTTT
T ss_pred             CeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CC-CEEEEEECCCCCcc
Confidence            89999998742   1  2222345 7889999999 44444 3          356888884 32 33333332211011


Q ss_pred             cceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          194 YQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       194 ~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ..++++++ .++.++++....+.+..+.
T Consensus       284 ~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          284 EHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             SCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             ccceEEEE-eCCEEEEeecCCCceEEEe
Confidence            23556655 3444333333444444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.07  E-value=0.00013  Score=64.66  Aligned_cols=141  Identities=10%  Similarity=0.033  Sum_probs=96.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .+.++...+++. |..|+.++.|..||.. +..+..+......+.++.+.+++.+++.+   +.|..|| .++..+..+.
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc
Confidence            345566666665 5567788999999998 87777776666677888888888766554   7899999 7777666652


Q ss_pred             ---CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          149 ---GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ---~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                         ..+.++..+++| +++++.++.|..+| ..+ .....+....    ..+.++.+.+++ .|.+++.+|.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g-~~~~~~~~~~----~~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          212 AGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDG-TEKWRFKTGK----RIESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTS-CEEEEEECSS----CCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             cCCcceeceEECCCCeEEEEcCCCeEEEEC-CCC-CEeEEeeCCC----CccccceEcCCC-eEEEecCCCCEEEECC
Confidence               347888999998 77788888999997 333 2332332221    123445555555 4667777776666654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.05  E-value=0.0011  Score=57.25  Aligned_cols=149  Identities=10%  Similarity=-0.026  Sum_probs=93.0

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+++|++++..|+.+. .++.|.++++........+........+++++|++.. +++-...+.|.++|+........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            578999999766555554 5789999999865543333233356789999996554 45555678999999874322111


Q ss_pred             e--c-CCceeEEEcCC-C-cEEEEc---CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeE
Q 040274          147 L--T-GHAKTLDFSQK-G-LLAVGT---GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWS  217 (359)
Q Consensus       147 ~--~-~~v~~~~~s~~-g-l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~  217 (359)
                      .  . .....++++|+ | ++.+..   .+.|..+++...  ....+...   .......++|+|++..|+.+.. .+.+
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~---~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQD---NLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECT---TCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEEC---CCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence            2  1 35689999995 5 444443   367888875322  22222111   1124788999998877655554 4566


Q ss_pred             EEEEc
Q 040274          218 GILVP  222 (359)
Q Consensus       218 ~i~~~  222 (359)
                      .++..
T Consensus       192 ~~~~~  196 (267)
T 1npe_A          192 ECLNP  196 (267)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            65554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.05  E-value=6.2e-05  Score=75.46  Aligned_cols=107  Identities=11%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             ceeEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-cceEE-eecCCCCeEEEEEecCCCEEEEecCC-----CeEEE
Q 040274           69 RTDLMRVN-PFNGVVSLGHS-GG----TVTMWKPTTS-ALLIK-MLYHQGPVSALAFHPNGHLMATTGKE-----CKIKI  135 (359)
Q Consensus        69 ~v~~l~~s-p~~~~l~tg~~-dg----~v~lwd~~~~-~~~~~-~~~h~~~v~~l~~~p~g~~l~s~~~d-----~~i~v  135 (359)
                      .+...+|| |||++|+.+.. +|    .|+++|+.++ +.+.. +.   ....+++|+|||+.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            46788999 99998876653 33    4999999988 63221 11   123568999999888777655     36888


Q ss_pred             EEcCCCee--eEee--c--CCceeEEEcCCC--cEEEEc---CCcEEEEcCCCC
Q 040274          136 WDLRKYEV--LQTL--T--GHAKTLDFSQKG--LLAVGT---GSFAQILGDFSG  178 (359)
Q Consensus       136 wd~~~~~~--~~~~--~--~~v~~~~~s~~g--l~~~~~---d~~i~v~d~~~~  178 (359)
                      +++.++..  ...+  .  ....++.|||||  ++..+.   ...|.++|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            89887642  2222  2  234678999999  333332   346788886543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.02  E-value=0.00052  Score=58.34  Aligned_cols=127  Identities=14%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--------CCce
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--------GHAK  152 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~v~  152 (359)
                      +..+.-.++.+.+||..+.+.+.++..... -..++  +++..|+.+..++.|.++|..+.+.+.++.        ..++
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence            334444688999999999999988874332 24454  566666666678999999999998887772        2346


Q ss_pred             eEEEcCCC-cEEEE-cCCcEEEEcCCCCCcccccccccc---------CCCCcceeEEEEccCCCEEEEEe
Q 040274          153 TLDFSQKG-LLAVG-TGSFAQILGDFSGSHNYSRYMGNS---------MVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       153 ~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~---------~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      .+.|. +| +++.. .++.|.+.|..++ .....+....         .......+.++|+|+++.|.+.+
T Consensus       154 eLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          154 ELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            67766 66 55555 4689999996655 3333222110         01223568899999887554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.01  E-value=0.00015  Score=71.93  Aligned_cols=149  Identities=8%  Similarity=0.029  Sum_probs=99.9

Q ss_pred             EEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCcceEEeec--CC-------CCeEEEEEecCCC-
Q 040274           72 LMRVNPFNGVVSLGHSGGT-------------------VTMWKPTTSALLIKMLY--HQ-------GPVSALAFHPNGH-  122 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~-------------------v~lwd~~~~~~~~~~~~--h~-------~~v~~l~~~p~g~-  122 (359)
                      .++++|++.++++++.++.                   |..||+.||+.+..+..  |.       .++.......+|. 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            6788998889998887764                   99999999999888764  21       1222223333565 


Q ss_pred             --EEEEecCCCeEEEEEcCCCeeeEeec-CC-----------------------------------------ceeEEEcC
Q 040274          123 --LMATTGKECKIKIWDLRKYEVLQTLT-GH-----------------------------------------AKTLDFSQ  158 (359)
Q Consensus       123 --~l~s~~~d~~i~vwd~~~~~~~~~~~-~~-----------------------------------------v~~~~~s~  158 (359)
                        .++.++.+|.++++|..+|+.+.... .+                                         -..++|+|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              78899999999999999998874321 00                                         12368888


Q ss_pred             CC--cEEEEc---------------------------------------------CCcEEEEcCCCCCccccccccccCC
Q 040274          159 KG--LLAVGT---------------------------------------------GSFAQILGDFSGSHNYSRYMGNSMV  191 (359)
Q Consensus       159 ~g--l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~  191 (359)
                      +.  +++.+.                                             +|.|..||+.++ +..-.+..+.  
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~--  475 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVT--  475 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESS--
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCC--
Confidence            76  333221                                             266888886555 3333333221  


Q ss_pred             CCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          192 KGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       192 ~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                         .+....+...+.++++|+.||.++.|...+++
T Consensus       476 ---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          476 ---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             ---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ---CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence               23334566788899999999999988766654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.00  E-value=0.00061  Score=60.62  Aligned_cols=158  Identities=8%  Similarity=0.007  Sum_probs=95.2

Q ss_pred             CCCCEEEEecc--ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec--------------------CCCCeEEE
Q 040274           58 SSGRYMAVAGR--RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY--------------------HQGPVSAL  115 (359)
Q Consensus        58 pdg~~l~~~~~--~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~--------------------h~~~v~~l  115 (359)
                      |.-..+...+.  ...+++|++++.+++++..++.|..|+..++.. ..+..                    ......++
T Consensus         7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi   85 (322)
T 2fp8_A            7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDI   85 (322)
T ss_dssp             ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE
T ss_pred             CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceE
Confidence            33444544432  577899999988788888899999999876543 22221                    11357889


Q ss_pred             EEec-CCCEEEEecCCCeEEEEEcCCCee--eEee-c----CCceeEEEcC-CC-cEEEEcC------------------
Q 040274          116 AFHP-NGHLMATTGKECKIKIWDLRKYEV--LQTL-T----GHAKTLDFSQ-KG-LLAVGTG------------------  167 (359)
Q Consensus       116 ~~~p-~g~~l~s~~~d~~i~vwd~~~~~~--~~~~-~----~~v~~~~~s~-~g-l~~~~~d------------------  167 (359)
                      ++++ +|.++++ ...+.|..+|..++..  +... .    ..+..+++.+ +| ++.+...                  
T Consensus        86 ~~~~~~g~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           86 SYNLQNNQLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             EEETTTTEEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             EEcCCCCcEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence            9998 6655444 4445588888775532  2111 1    2357899999 88 5554432                  


Q ss_pred             CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE-eCCCeEEEEEcC
Q 040274          168 SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG-HSMGWSGILVPR  223 (359)
Q Consensus       168 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g-~~dg~~~i~~~g  223 (359)
                      +.|..||.... ..........     ....++|+|+|++|+++ +..+.+.++...
T Consensus       165 g~v~~~d~~~~-~~~~~~~~~~-----~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          165 GRLIKYDPSTK-ETTLLLKELH-----VPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             EEEEEEETTTT-EEEEEEEEES-----CCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             ceEEEEeCCCC-EEEEeccCCc-----cCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            56888884333 2111111111     35678999999876655 445666665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.00  E-value=0.0028  Score=54.42  Aligned_cols=185  Identities=8%  Similarity=0.034  Sum_probs=110.6

Q ss_pred             ceeEEEEcCCCCE-EEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee---
Q 040274           69 RTDLMRVNPFNGV-VSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV---  143 (359)
Q Consensus        69 ~v~~l~~sp~~~~-l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~---  143 (359)
                      .+..|+|+|++.. +++...++.|...|+. +..+..+. ......-.+++.+++.++++.-.++.+.++++.....   
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~  106 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI  106 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence            6889999997665 4556778899999998 77777664 2235678899999998877776788999998865432   


Q ss_pred             eEeec---------CCceeEEEcCCC--cEEEEcCCcEEEEcCC--CCCccccccc----cccCCCCcceeEEEEccCCC
Q 040274          144 LQTLT---------GHAKTLDFSQKG--LLAVGTGSFAQILGDF--SGSHNYSRYM----GNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       144 ~~~~~---------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~--~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~  206 (359)
                      +....         .....++|+|.+  ++++...+...||.+.  ..........    .... .-..+.+++|+|...
T Consensus       107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~-~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF-TLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC-CSSCCCEEEEETTTT
T ss_pred             eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc-ccCCceeEEEcCCCC
Confidence            22221         113789999988  6666654444444422  1111111110    0001 123578999999766


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCceeeeccCCCCChhhhhhHHHHHhhh-ccCCCeeeeCCCC
Q 040274          207 VLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLD-KLLLETIMLNPSK  266 (359)
Q Consensus       207 ~l~~g~~dg~~~i~~~gs~~~~~~~~~~~~~~~~~~~~e~ev~~ll~-~~~~~~i~~~~~~  266 (359)
                      .|++.+..+..-+.+...+. .+..+...+-.          ..|.. --+|+.|++|++.
T Consensus       186 ~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~----------~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLVGE-VIGEMSLTKGS----------RGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             EEEEEETTTTEEEEECTTCC-EEEEEECSTTG----------GGCSSCCCSEEEEEECTTC
T ss_pred             eEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc----------CCcccccCCCCeeEECCCC
Confidence            66555555443333333333 45555544211          01100 1268999999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.95  E-value=0.0018  Score=57.14  Aligned_cols=164  Identities=10%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEEEeCC-C-eEEEEeCCCCcceEEee-c
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSLGHSG-G-TVTMWKPTTSALLIKML-Y  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~tg~~d-g-~v~lwd~~~~~~~~~~~-~  107 (359)
                      ..++|+++|+.+++...                     .+.++++++++.++++.... + .|..+|..+++...... .
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~  114 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP  114 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC
Confidence            56778788776555422                     46789999999866655433 2 47777877776432222 1


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee-eEe--------e-c---CCceeEEEcCCC--c-EEEEcCCcEE
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV-LQT--------L-T---GHAKTLDFSQKG--L-LAVGTGSFAQ  171 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~-~~~--------~-~---~~v~~~~~s~~g--l-~~~~~d~~i~  171 (359)
                      .......++..+++..+++-..++.|+++|...+.. +..        . .   ...+.+  ++++  + ++-...+.|.
T Consensus       115 ~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~  192 (306)
T 2p4o_A          115 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLL  192 (306)
T ss_dssp             TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEE
T ss_pred             CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEE
Confidence            223345666666665556555688999999876431 110        0 0   123445  7777  3 3334467899


Q ss_pred             EEcCCCCCcc--ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          172 ILGDFSGSHN--YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       172 v~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +|++...+..  ...+...     .....++++++|.++++....+.+.++.+
T Consensus       193 ~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          193 RIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             EEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            9996532111  1111111     13566889999987776666677777665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.95  E-value=0.0016  Score=55.95  Aligned_cols=167  Identities=10%  Similarity=-0.041  Sum_probs=98.8

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce---EE
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL---IK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~---~~  104 (359)
                      ..|+|+|++..|.+...                        ..-.|++.+++.++++.-.++.+.++++.....+   ..
T Consensus        30 SGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~  109 (255)
T 3qqz_A           30 SSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKK  109 (255)
T ss_dssp             EEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence            78888887776665443                        4457788888876666556788999887654421   22


Q ss_pred             ee------cCCCCeEEEEEecCCCEEEEecCCCe--EEEEEcC-CCeeeEee----------cCCceeEEEcCCC--cEE
Q 040274          105 ML------YHQGPVSALAFHPNGHLMATTGKECK--IKIWDLR-KYEVLQTL----------TGHAKTLDFSQKG--LLA  163 (359)
Q Consensus       105 ~~------~h~~~v~~l~~~p~g~~l~s~~~d~~--i~vwd~~-~~~~~~~~----------~~~v~~~~~s~~g--l~~  163 (359)
                      ..      .+....-+++|+|.+..|+++.....  |+.|+-. ....+..+          ...+.+++++|..  ++.
T Consensus       110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lli  189 (255)
T 3qqz_A          110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLV  189 (255)
T ss_dssp             EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEE
T ss_pred             eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEE
Confidence            21      12345689999999877766665444  5555410 11111211          1236889999975  544


Q ss_pred             EE-cCCcEEEEcCCCCCccccccccccCC-----CCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          164 VG-TGSFAQILGDFSGSHNYSRYMGNSMV-----KGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       164 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .+ .+..|.++|. .+ .....+.-..+.     .-.....|+|.|+|+ |++.++......|.
T Consensus       190 LS~~s~~L~~~d~-~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          190 LSHESRALQEVTL-VG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEECT-TC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             EECCCCeEEEEcC-CC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            44 4578888884 33 233222111100     112568899999998 55556666555544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.91  E-value=9.8e-05  Score=73.06  Aligned_cols=126  Identities=9%  Similarity=0.079  Sum_probs=86.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCC-----------CCe------------------------EEEEEecCCCEE
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-----------GPV------------------------SALAFHPNGHLM  124 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-----------~~v------------------------~~l~~~p~g~~l  124 (359)
                      ..+++++.+|.|+++|..+|+.+..+....           .++                        ..++|+|+..++
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            578888999999999999999887654211           011                        156889988887


Q ss_pred             EEecC-------------------------------------------CCeEEEEEcCCCeeeEeec--CCceeEEEcCC
Q 040274          125 ATTGK-------------------------------------------ECKIKIWDLRKYEVLQTLT--GHAKTLDFSQK  159 (359)
Q Consensus       125 ~s~~~-------------------------------------------d~~i~vwd~~~~~~~~~~~--~~v~~~~~s~~  159 (359)
                      ++...                                           .+.|..||+.+++.+..+.  .++....++.+
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            77543                                           2789999999999888773  33455555555


Q ss_pred             C--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEE
Q 040274          160 G--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       160 g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      |  ++.++.++.+++||..++ +.+..+.....   ....-+.|.++|+.++
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~---~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATG-EKLWEAPTGTG---VVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCC-ceeeeeeCCCC---cccCCEEEEeCCEEEE
Confidence            5  666778999999997665 44444433321   1234456778886443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.88  E-value=6.6e-05  Score=68.43  Aligned_cols=86  Identities=10%  Similarity=-0.020  Sum_probs=69.6

Q ss_pred             eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec----------CCCeEEEEEcCCCeeeEeecC----------
Q 040274           90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG----------KECKIKIWDLRKYEVLQTLTG----------  149 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~----------  149 (359)
                      .|.++|+.+++.+..+.....+  .+.++|||+++++++          .++.|.+||+.+++.+.++.-          
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8899999999999988865566  799999999988886          368899999999999988832          


Q ss_pred             CceeEEEcCCC--cEEEEc--CCcEEE--EcCCC
Q 040274          150 HAKTLDFSQKG--LLAVGT--GSFAQI--LGDFS  177 (359)
Q Consensus       150 ~v~~~~~s~~g--l~~~~~--d~~i~v--~d~~~  177 (359)
                      ....+.++|||  ++.+..  ++.|.+  +|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            36789999999  444443  357888  98644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.84  E-value=0.0003  Score=62.39  Aligned_cols=131  Identities=4%  Similarity=0.010  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEE
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLD  155 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~  155 (359)
                      +..|..++.++.|..+|.. +.....+..+...+.++...+++. ++.++.++.|..||.. +..+..+.   ..+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4567788889999999998 777777666666677788887876 5556778999999998 77766652   3467788


Q ss_pred             EcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          156 FSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       156 ~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +.++| +++++  +.|..|| .++. ....+...    ...+.++.+.++|.+ .+++.++.+..+.
T Consensus       184 ~d~~g~l~v~t--~~l~~~d-~~g~-~~~~~~~~----~~~~~~~~~~~~g~l-~v~t~~~gl~~~~  241 (330)
T 3hxj_A          184 IGKDGTIYFGS--DKVYAIN-PDGT-EKWNFYAG----YWTVTRPAISEDGTI-YVTSLDGHLYAIN  241 (330)
T ss_dssp             ECTTCCEEEES--SSEEEEC-TTSC-EEEEECCS----SCCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred             EcCCCEEEEEe--CEEEEEC-CCCc-EEEEEccC----CcceeceEECCCCeE-EEEcCCCeEEEEC
Confidence            88888 55555  8899999 4442 22222222    125788888888764 4455555555553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.83  E-value=0.003  Score=56.37  Aligned_cols=142  Identities=15%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKP--TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~--~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+..+.++|++.+++++...+..+-+|-  .+.+.+.  ......+..+.+.+++.+++. +.+|.+++++...+..-..
T Consensus       164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~  240 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGE  240 (327)
T ss_dssp             CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECC
T ss_pred             ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEe
Confidence            5778899998888777654443444442  2223321  234567889999999876644 5678887775332332222


Q ss_pred             e--c-----CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          147 L--T-----GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       147 ~--~-----~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      +  +     ..+.++.+.+++ +++++.++.|..-  ...+........... ....+.++.|.+++. +++++.+|.+
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S--~DgG~tW~~~~~~~~-~~~~~~~v~~~~~~~-~~~~G~~G~i  315 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCS--QDGGQTWQQDVDVKK-VPSNFYKILFFSPDQ-GFILGQKGIL  315 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEE--SSTTSSCEECGGGTT-SSSCCCEEEEEETTE-EEEECSTTEE
T ss_pred             ccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEe--CCCCcccEEcCccCC-CCCCeEEEEEECCCc-eEEEcCCceE
Confidence            2  1     136788898888 7777778877443  223333333321100 112578888876655 4455566644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.80  E-value=0.00083  Score=57.68  Aligned_cols=127  Identities=9%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--------CCc
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--------GHA  151 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~v  151 (359)
                      .+.++...++.+.+||+.+.+.+.++... +.-..++  +++..|+.+..++.|.++|..+++.+.++.        ..+
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            34444556889999999999999888743 2224444  567777777779999999999998887772        134


Q ss_pred             eeEEEcCCC-cEEEE-cCCcEEEEcCCCCCccccccccc---------cCCCCcceeEEEEccCCCEEEEE
Q 040274          152 KTLDFSQKG-LLAVG-TGSFAQILGDFSGSHNYSRYMGN---------SMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       152 ~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      +.+.|. +| +++.. .++.|.+.|..++ .....+...         ........+.|+|+|+++.|++.
T Consensus       184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          184 NELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             EEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             cccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            667777 77 65555 4689999996555 333322111         00022356889999987655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.79  E-value=0.00077  Score=61.19  Aligned_cols=144  Identities=12%  Similarity=0.026  Sum_probs=88.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecCC---------CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ---------GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~---------~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .+..+++++.++.|..||..+++.+..+....         ..+.+. ...++..++.++.++.|..+|..+++.+..+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            45678888889999999999999887765421         222221 22245577788889999999999999877663


Q ss_pred             --CCc-eeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCC-CcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          149 --GHA-KTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVK-GYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       149 --~~v-~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                        ..+ ...... ++ +++++.++.|..+|..++. ..-.+....... .........  .+..+++++.+|.+..+...
T Consensus       131 ~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          131 VAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             CSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCC-EEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETT
T ss_pred             CCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECC
Confidence              222 222333 45 7777788999999965553 222222111000 000011222  24567778888877777765


Q ss_pred             CCC
Q 040274          224 SSE  226 (359)
Q Consensus       224 s~~  226 (359)
                      ++.
T Consensus       207 tG~  209 (376)
T 3q7m_A          207 QGQ  209 (376)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.00087  Score=62.44  Aligned_cols=148  Identities=8%  Similarity=-0.046  Sum_probs=91.4

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-CC----eEEEEEcCCCe
Q 040274           69 RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-EC----KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~----~i~vwd~~~~~  142 (359)
                      ....|+++| ++..|+++...+.|+.+|+.++.. ..+.........++|+++|++|+.+.. ++    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            467899998 456666666558899999987653 333344556789999999996655544 21    3444443 232


Q ss_pred             ee--Eee--cCCceeEEEcC-CC-cEEEE-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE-eCC
Q 040274          143 VL--QTL--TGHAKTLDFSQ-KG-LLAVG-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG-HSM  214 (359)
Q Consensus       143 ~~--~~~--~~~v~~~~~s~-~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g-~~d  214 (359)
                      ..  ..+  ..+...++++| +| ++.+. ..+.|..|+.... ... .+....  .......++|+|+|++|+++ ...
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~-~~~~~~--~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETT-PLFTIQ--DSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEE-EEEECS--SSSCCEEEEECTTSSEEEEEETTT
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEE-EEEEcC--CCCcceeEEEcCCCCEEEEEECCC
Confidence            21  222  34578899999 67 55444 4578999985433 221 111111  11246789999999965554 455


Q ss_pred             CeEEEEEc
Q 040274          215 GWSGILVP  222 (359)
Q Consensus       215 g~~~i~~~  222 (359)
                      +.+..+..
T Consensus       292 ~~I~~~~~  299 (430)
T 3tc9_A          292 HYILRSDY  299 (430)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEeC
Confidence            66666543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.77  E-value=0.00036  Score=69.19  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCC----------------------------C-----------CeEEEEEecCC
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQ----------------------------G-----------PVSALAFHPNG  121 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~----------------------------~-----------~v~~l~~~p~g  121 (359)
                      .++.++.+|.++++|..+|+.+.......                            .           .-..++|+|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            67888899999999999998874322100                            0           01236888887


Q ss_pred             CEEEEecC---------------------------------------------CCeEEEEEcCCCeeeEeec--CCceeE
Q 040274          122 HLMATTGK---------------------------------------------ECKIKIWDLRKYEVLQTLT--GHAKTL  154 (359)
Q Consensus       122 ~~l~s~~~---------------------------------------------d~~i~vwd~~~~~~~~~~~--~~v~~~  154 (359)
                      .++++...                                             +|.|..||+.+++.+..++  .++...
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g  480 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGG  480 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCC
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCc
Confidence            77776522                                             3789999999999888773  333333


Q ss_pred             EEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE-EEEE
Q 040274          155 DFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV-LGIG  211 (359)
Q Consensus       155 ~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~g  211 (359)
                      .++..|  ++.++.|+.|+.||..++ +.+-.+.....   ....-+.|..+|+. +++.
T Consensus       481 ~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~---~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          481 TLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASG---VMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEEEEEEE
T ss_pred             cceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCC---cccCceEEEECCEEEEEEE
Confidence            444444  667778999999997665 44444433321   12234677788864 4443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.76  E-value=0.0034  Score=55.30  Aligned_cols=121  Identities=7%  Similarity=-0.015  Sum_probs=71.9

Q ss_pred             CCCeEEEEeCCCCcc-eEEee---------cCCCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCC-Cee--eEee--cCC
Q 040274           87 SGGTVTMWKPTTSAL-LIKML---------YHQGPVSALAFHPNGHLMAT-TGKECKIKIWDLRK-YEV--LQTL--TGH  150 (359)
Q Consensus        87 ~dg~v~lwd~~~~~~-~~~~~---------~h~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~-~~~--~~~~--~~~  150 (359)
                      .++.|+++|..++.. +....         ......+.+  +|++..|+. -...+.|.+||+.. +..  ...+  ...
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~  213 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN  213 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC
T ss_pred             CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCC
Confidence            577888888765421 11100         111234555  788876544 45678899999874 322  1222  235


Q ss_pred             ceeEEEcCCC-cEEEE-cCCcEEEEcCCCCCcccc--ccccccCCCCcceeEEEEc---cCCCEEEEEeCCC
Q 040274          151 AKTLDFSQKG-LLAVG-TGSFAQILGDFSGSHNYS--RYMGNSMVKGYQIGKVSFR---PYEDVLGIGHSMG  215 (359)
Q Consensus       151 v~~~~~s~~g-l~~~~-~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~s---p~~~~l~~g~~dg  215 (359)
                      ...++++++| ++++. ..+.|.+||. .+ ....  .+..    .....++++|.   |+++.|++++..+
T Consensus       214 P~gi~vd~dG~l~va~~~~~~V~~~~~-~G-~~~~~~~~~~----~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          214 IDDFAFDVEGNLYGATHIYNSVVRIAP-DR-STTIIAQAEQ----GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECT-TC-CEEEEECGGG----TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCeEECCCCCEEEEeCCCCeEEEECC-CC-CEEEEeeccc----ccCCceEEEEecccCCCCEEEEECCCC
Confidence            6789999999 54444 4688999984 33 2211  1211    11258899998   8988877666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.62  E-value=0.018  Score=51.86  Aligned_cols=146  Identities=7%  Similarity=-0.085  Sum_probs=84.6

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEe-cCC-CeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATT-GKE-CKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~-~~d-~~i~vwd~~~~~~~~  145 (359)
                      ....+++++.+..| ++-...+.|.+.++........+........+++++|.+..|+.+ ... +.|..+++... ...
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~  195 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRR  195 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcE
Confidence            34678888755444 444556789999987544333333334567899999965555444 344 78999988743 222


Q ss_pred             ee-c---CCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          146 TL-T---GHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       146 ~~-~---~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      .+ .   ...+.++|+|++  + ++-+..+.|..+|+... .....+...    ......+++ ..+.++.+-...+.+.
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~----~~~P~giav-~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQG----LPHPFAITV-FEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSS----CSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCC----CCCceEEEE-ECCEEEEecCCCCeEE
Confidence            22 1   246889999865  4 44444578999985432 211111111    113566777 3444444444556665


Q ss_pred             EEE
Q 040274          219 ILV  221 (359)
Q Consensus       219 i~~  221 (359)
                      .+.
T Consensus       270 ~~~  272 (349)
T 3v64_C          270 SAN  272 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.59  E-value=0.024  Score=51.02  Aligned_cols=148  Identities=6%  Similarity=-0.120  Sum_probs=91.0

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+..++|++.+..|+... ..+.|..+++..+.....+........++++++. +.++++-...+.|.+.++........
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            568899998666655554 6788999998866543333333345678999985 44555656678999999875432222


Q ss_pred             ec---CCceeEEEcCCC--cEEEE-cC-CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEE
Q 040274          147 LT---GHAKTLDFSQKG--LLAVG-TG-SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSG  218 (359)
Q Consensus       147 ~~---~~v~~~~~s~~g--l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~  218 (359)
                      +.   .....++++|.+  ++.+. .. +.|..+++...  ....+...   .......++|+|++..|+.+.. .+.|.
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~---~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADT---HLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCS---SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEEC---CCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            22   346899999854  43333 34 67888875322  22222211   1124788999997776665543 44455


Q ss_pred             EEE
Q 040274          219 ILV  221 (359)
Q Consensus       219 i~~  221 (359)
                      .+.
T Consensus       229 ~~~  231 (349)
T 3v64_C          229 RAN  231 (349)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.58  E-value=0.002  Score=63.60  Aligned_cols=74  Identities=14%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             EEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceEEeec--CC-------CCeEEEEEecCCC-
Q 040274           72 LMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTSALLIKMLY--HQ-------GPVSALAFHPNGH-  122 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg-------------------~v~lwd~~~~~~~~~~~~--h~-------~~v~~l~~~p~g~-  122 (359)
                      .++++|++..++.++.++                   .|..+|+.+++.+..+..  |.       .+.....+..+|. 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            478888888888887766                   499999999999888764  22       2333333334665 


Q ss_pred             --EEEEecCCCeEEEEEcCCCeeeE
Q 040274          123 --LMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus       123 --~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                        .++.++.+|.++++|..+|+.+.
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEec
Confidence              68899999999999999998874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.56  E-value=0.0057  Score=56.94  Aligned_cols=167  Identities=11%  Similarity=0.069  Sum_probs=98.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      ..++++++|+++++...                           ....++++| ++.++++-..++.|+.+|+.++....
T Consensus       185 ~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~  264 (433)
T 4hw6_A          185 ADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE  264 (433)
T ss_dssp             EEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred             cEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence            88999999996555430                           245688888 66665565567889999998776523


Q ss_pred             Eee--cCCCCeEEEEEecCCCEE-EEecCCCeEEEEEcC--CCee--eEeec------------------CCceeEEE--
Q 040274          104 KML--YHQGPVSALAFHPNGHLM-ATTGKECKIKIWDLR--KYEV--LQTLT------------------GHAKTLDF--  156 (359)
Q Consensus       104 ~~~--~h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~--~~~~--~~~~~------------------~~v~~~~~--  156 (359)
                      .+.  +....-..++|+|+|++| ++-...+.|..+|+.  ++..  ...+.                  .....+++  
T Consensus       265 ~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~  344 (433)
T 4hw6_A          265 EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK  344 (433)
T ss_dssp             EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred             EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence            322  122233579999999854 455567889998865  2321  11110                  12466888  


Q ss_pred             -------cCCC-cEEEE-cCCcEEEEcCCCCCcccccccccc-----C---------CCCcceeEEEEc-cCCCEEEEEe
Q 040274          157 -------SQKG-LLAVG-TGSFAQILGDFSGSHNYSRYMGNS-----M---------VKGYQIGKVSFR-PYEDVLGIGH  212 (359)
Q Consensus       157 -------s~~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~-----~---------~~~~~v~~~~~s-p~~~~l~~g~  212 (359)
                             .++| ++.+. ..+.|+.++. .+ . +..+.+..     +         ..-.....++++ ++|.++++-.
T Consensus       345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             CGGGTTSSCCEEEEEEETTTTEEEEECT-TS-E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             cccccccCCCCcEEEEECCCCEEEEECC-CC-C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence                   6777 44444 4578888873 32 1 22211110     0         001236788888 5665555545


Q ss_pred             CCCeEEEEE
Q 040274          213 SMGWSGILV  221 (359)
Q Consensus       213 ~dg~~~i~~  221 (359)
                      .++.++.+.
T Consensus       422 ~n~rIr~i~  430 (433)
T 4hw6_A          422 DNHRVRKIA  430 (433)
T ss_dssp             GGTEEEEEE
T ss_pred             CCCEEEEEe
Confidence            555555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.56  E-value=0.02  Score=57.52  Aligned_cols=143  Identities=12%  Similarity=0.051  Sum_probs=92.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec--------CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY--------HQGPVSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~--------h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .|.++...++|. |-.|+.++-|..|+..++....-...        ....|.++...++|.+|..|+.++-|.+||..+
T Consensus       358 ~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          358 VVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             eeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            477888777775 44577777899999887654322111        235789999999998566667767799999987


Q ss_pred             CeeeEee-------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccc---cCCCCcceeEEEEccCCCEEE
Q 040274          141 YEVLQTL-------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGN---SMVKGYQIGKVSFRPYEDVLG  209 (359)
Q Consensus       141 ~~~~~~~-------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~  209 (359)
                      ++...-.       ...|.++...++| ++.++. +.|.+||..+. . ...+...   .......|.++...++|.+.+
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR-S-FTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT-E-EEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC-e-EEEccccccccccCCceEEEEEECCCCCEEE
Confidence            7543321       2357888888888 777766 56888985433 1 1122110   011234689999988887665


Q ss_pred             EEeCCCe
Q 040274          210 IGHSMGW  216 (359)
Q Consensus       210 ~g~~dg~  216 (359)
                      .+. +|.
T Consensus       514 gt~-~Gl  519 (795)
T 4a2l_A          514 GGE-EGL  519 (795)
T ss_dssp             EES-SCE
T ss_pred             EeC-Cce
Confidence            444 553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=0.012  Score=54.79  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNP-FNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp-~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      ..++|+++|++|..+..                            ....++++| ++.++++-..++.|..|++.++...
T Consensus       182 ~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~  261 (430)
T 3tc9_A          182 RTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT  261 (430)
T ss_dssp             EEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            78999999995544321                            346788999 6666666667789999999876532


Q ss_pred             EEee-cCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcC
Q 040274          103 IKML-YHQGPVSALAFHPNGHL-MATTGKECKIKIWDLR  139 (359)
Q Consensus       103 ~~~~-~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~  139 (359)
                      ..+. .....-+.++|+|+|++ +++-...+.|..+|..
T Consensus       262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            2222 12234678999999995 4555567889998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.53  E-value=0.021  Score=52.19  Aligned_cols=147  Identities=7%  Similarity=-0.084  Sum_probs=84.7

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec-CC-CeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG-KE-CKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~-~d-~~i~vwd~~~~~~~~  145 (359)
                      ....+++++.+..| ++-...+.|.+.++........+.........++++|.+..|+.+. .. +.|..+++.......
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  239 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI  239 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence            34568888754444 4444567888888875443333333345678999999766655544 34 688888887432222


Q ss_pred             ee---cCCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TL---TGHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~---~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      ..   -...+.|+|+|++  + ++-+..+.|..+|+... . ...+...   .......+++ ..+.++.+....+.+..
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-H-RKAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINS  313 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-S-CEEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-e-eEEEEEC---CCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence            22   1246889999765  4 44445678999985432 2 2222111   1113567777 34444455555666665


Q ss_pred             EE
Q 040274          220 LV  221 (359)
Q Consensus       220 ~~  221 (359)
                      +.
T Consensus       314 ~~  315 (386)
T 3v65_B          314 AN  315 (386)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.49  E-value=0.0028  Score=52.70  Aligned_cols=137  Identities=18%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce------EEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL------IKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~------~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .+..++|+|++.+.++  .+|.++-.++.+....      ..+-  +..+ ..++.|.|+|.+.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            6789999998876655  7788777777553221      1110  1112 578999999988777  669999888644


Q ss_pred             Ceee------Eee-c---CCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcc----ccccccccCCCCcceeEEEEccCC
Q 040274          141 YEVL------QTL-T---GHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHN----YSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       141 ~~~~------~~~-~---~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      ...-      ..+ .   ..+..|.++|+| |.++. ++.+.-+........    ......+..  ......+.|+|++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCC--cceEEEEEECCCC
Confidence            2111      111 1   246899999999 77777 887644432211100    011111111  1134446799999


Q ss_pred             CEEEEEeCCC
Q 040274          206 DVLGIGHSMG  215 (359)
Q Consensus       206 ~~l~~g~~dg  215 (359)
                      .+.++.  +|
T Consensus       194 ~l~~v~--~g  201 (236)
T 1tl2_A          194 TLFGVQ--GG  201 (236)
T ss_dssp             CEEEEE--TT
T ss_pred             cEEEEe--CC
Confidence            877776  55

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.49  E-value=0.022  Score=50.67  Aligned_cols=142  Identities=13%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEc--CCCeeeEe
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL--RKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~--~~~~~~~~  146 (359)
                      +..+.+.+++..++++ .+|.|.. ..+.+. -......+...+.++.++|++.+++++...+.++-+|-  .+.+.+..
T Consensus       124 ~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          124 PRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             EEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC
T ss_pred             eEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC
Confidence            4556666666555554 4554422 222232 12222345567899999999988877655444444553  33344322


Q ss_pred             e-cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          147 L-TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       147 ~-~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      . ...+..+.+++++ +++++.+|.+.+.+ ...+.....+..........+.++.|.|++.+++++...
T Consensus       202 ~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          202 TTSRRLHNMGFTPDGRLWMIVNGGKIAFSD-PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             CSSSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             CCCCccceeEECCCCCEEEEeCCceEEEec-CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence            2 3456788899998 77788888877763 111122211111100012258899999988877776643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.48  E-value=0.0044  Score=56.09  Aligned_cols=141  Identities=11%  Similarity=0.043  Sum_probs=88.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCe-----EEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecCC---
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPV-----SALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---  150 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v-----~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---  150 (359)
                      +..+++++.++.|..+|..+++.+..+.......     ......  +..++.++.++.|..+|..+++.+..+...   
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            3467777888889999988888777665432211     122222  346778888999999999999887766311   


Q ss_pred             ----------c-eeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          151 ----------A-KTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       151 ----------v-~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                                + ....+. ++ +++++.++.+..+|..++. ..-.....      ...++..  ++..|++++.+|.+.
T Consensus       221 ~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~-~~w~~~~~------~~~~~~~--~~~~l~~~~~~g~l~  290 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQ-IMWKRELG------SVNDFIV--DGNRIYLVDQNDRVM  290 (376)
T ss_dssp             ---------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCC-EEEEECCC------CEEEEEE--ETTEEEEEETTCCEE
T ss_pred             CCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCc-EEeeccCC------CCCCceE--ECCEEEEEcCCCeEE
Confidence                      1 111222 34 7777778999999965553 22222111      2333333  467788888888888


Q ss_pred             EEEcCCCCCceeeecc
Q 040274          219 ILVPRSSEPNFDSWVA  234 (359)
Q Consensus       219 i~~~gs~~~~~~~~~~  234 (359)
                      .+...++.   .+|..
T Consensus       291 ~~d~~tG~---~~w~~  303 (376)
T 3q7m_A          291 ALTIDGGV---TLWTQ  303 (376)
T ss_dssp             EEETTTCC---EEEEE
T ss_pred             EEECCCCc---EEEee
Confidence            88876654   34554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.44  E-value=0.023  Score=51.84  Aligned_cols=148  Identities=6%  Similarity=-0.125  Sum_probs=89.0

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+..++|++.+..|+.. ...+.|..+++..+.....+.........+++++. +.++++-...+.|.+.++........
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence            57789999865555544 46788999998866533333333344578899975 44455555678899988874432222


Q ss_pred             ec---CCceeEEEcCCC--cEEEE-cC-CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEE
Q 040274          147 LT---GHAKTLDFSQKG--LLAVG-TG-SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSG  218 (359)
Q Consensus       147 ~~---~~v~~~~~s~~g--l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~  218 (359)
                      +.   .....++++|.+  ++.+. .. +.|..+++...  ....+...   .......++|+|++..|+.+.. .+.|.
T Consensus       197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~---~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADT---HLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECS---SCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEEEEC---CCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            22   346889999865  43333 33 67888875332  22222211   1124688999987776665543 44444


Q ss_pred             EEE
Q 040274          219 ILV  221 (359)
Q Consensus       219 i~~  221 (359)
                      .+.
T Consensus       272 ~~d  274 (386)
T 3v65_B          272 RAN  274 (386)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.41  E-value=0.012  Score=53.82  Aligned_cols=142  Identities=10%  Similarity=0.047  Sum_probs=89.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEeecC----CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCe-----------
Q 040274           78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYH----QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE-----------  142 (359)
Q Consensus        78 ~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h----~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~-----------  142 (359)
                      +|.-++++- ++.||..++.....-..+...    -+.|..+..||+|.+||..+. ..|.|-.+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence            455555543 467888787744333333322    235788999999999988865 468888776321           


Q ss_pred             -eeEee---------cCCceeEEEcCCC-----cEEEEcCCcEEEEcCCCCCccccccc------cccCCCCcceeEEEE
Q 040274          143 -VLQTL---------TGHAKTLDFSQKG-----LLAVGTGSFAQILGDFSGSHNYSRYM------GNSMVKGYQIGKVSF  201 (359)
Q Consensus       143 -~~~~~---------~~~v~~~~~s~~g-----l~~~~~d~~i~v~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~  201 (359)
                       ...++         ...|..+.|+|-|     +++...|+.|++||+.........+.      +... ....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~-~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDA-RVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCS-SCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCc-ccceEEEEEE
Confidence             01122         1358899999976     88999999999999865322211111      1100 1136889999


Q ss_pred             ccCCCEEEEEe--CCCeEEEEEc
Q 040274          202 RPYEDVLGIGH--SMGWSGILVP  222 (359)
Q Consensus       202 sp~~~~l~~g~--~dg~~~i~~~  222 (359)
                      .+++-.|.+.+  .+|-+.-+.|
T Consensus       188 g~~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEESS
T ss_pred             cCCCcEEEEEecCCCCCEEEECC
Confidence            99776666644  6665555544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.02  Score=57.36  Aligned_cols=146  Identities=10%  Similarity=0.030  Sum_probs=91.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .|.++...+++.+ ..|+.++-|..|+..++.......  .....|.++...++|.+.+.. . +-|.+||..++.....
T Consensus       408 ~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          408 SVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             BEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEE
T ss_pred             ceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEec
Confidence            3666776666654 446666778899987765332211  134678999988888765544 4 5589999887654322


Q ss_pred             e--------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          147 L--------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       147 ~--------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      .        ...|.++...++| +..++.++.|..||....  ....+......+...|.++...++|.+.+.. .+|.+
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv  561 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLV  561 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEE
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCce
Confidence            2        1357889899999 777777666888985332  2222221111134468999998888765544 36653


Q ss_pred             EEE
Q 040274          218 GIL  220 (359)
Q Consensus       218 ~i~  220 (359)
                      ..+
T Consensus       562 ~~~  564 (781)
T 3v9f_A          562 CFP  564 (781)
T ss_dssp             EES
T ss_pred             EEE
Confidence            443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.029  Score=56.22  Aligned_cols=143  Identities=11%  Similarity=0.073  Sum_probs=88.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC-----CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeee
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH-----QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h-----~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      |.++...+++. |..|+. +-|.+||..++.........     ...|.++...++|.+.+.....| |..||..++...
T Consensus       452 v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~  528 (781)
T 3v9f_A          452 VRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR  528 (781)
T ss_dssp             EEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE
T ss_pred             EEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE
Confidence            56666666664 444555 56889998876543322222     35789999999998665544344 788998766543


Q ss_pred             Eee------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          145 QTL------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       145 ~~~------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                      .-.      ...|.++...++| +..++.+|.|..||....  ....+....+.+...|.++...++|.+.+ ++.+|..
T Consensus       529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lW~-~t~~Gl~  605 (781)
T 3v9f_A          529 KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNF--DYQVFQRKEGLPNTHIRAISEDKNGNIWA-STNTGIS  605 (781)
T ss_dssp             EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTC--CCEEECGGGTCSCCCCCEEEECSSSCEEE-ECSSCEE
T ss_pred             EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCC--cEEEccccCCCCCceEEEEEECCCCCEEE-EcCCceE
Confidence            221      2347888888999 776766555488985433  22233222222444688898888887554 4566644


Q ss_pred             E
Q 040274          218 G  218 (359)
Q Consensus       218 ~  218 (359)
                      .
T Consensus       606 ~  606 (781)
T 3v9f_A          606 C  606 (781)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.34  E-value=0.008  Score=58.06  Aligned_cols=74  Identities=11%  Similarity=0.004  Sum_probs=52.1

Q ss_pred             EEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcceEEeecC--C--------CCeEEEEEecCCC---E
Q 040274           73 MRVNPFNGVVSLGHSG----------------GTVTMWKPTTSALLIKMLYH--Q--------GPVSALAFHPNGH---L  123 (359)
Q Consensus        73 l~~sp~~~~l~tg~~d----------------g~v~lwd~~~~~~~~~~~~h--~--------~~v~~l~~~p~g~---~  123 (359)
                      +++++....++.++.+                +.|..+|+.+++.+..+...  .        .++. +...++|+   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            6677766677766532                36999999999988877632  1        2221 22234674   5


Q ss_pred             EEEecCCCeEEEEEcCCCeeeEee
Q 040274          124 MATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus       124 l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      ++.++.+|.++++|..+|+.+..+
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCcEEEEEECCCCCEEeee
Confidence            778889999999999999887665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.34  E-value=0.015  Score=54.14  Aligned_cols=150  Identities=11%  Similarity=-0.038  Sum_probs=88.4

Q ss_pred             ceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC---C-eEEEEEcCCCe
Q 040274           69 RTDLMRVNPF--NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE---C-KIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~--~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d---~-~i~vwd~~~~~  142 (359)
                      ....|+|+|+  +..|+.+...+.|+.+|+.++... .+........+++|+++|.++++....   . .+..++...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4678999994  455666655589999999877644 343445568999999999955554321   2 23333332211


Q ss_pred             e-eEee--cCCceeEEEcC-CC-cEEEE-cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCC
Q 040274          143 V-LQTL--TGHAKTLDFSQ-KG-LLAVG-TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMG  215 (359)
Q Consensus       143 ~-~~~~--~~~v~~~~~s~-~g-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg  215 (359)
                      . ...+  ......++++| +| ++.+. .++.|+.+|...+ .....+....  .......++|+|+|++|+++. ..+
T Consensus       219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~--~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLTEEEVMMD--TKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEEEEEEECS--CCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEEEEEeccC--CCCCcccEEEeCCCCEEEEEeCCCC
Confidence            1 0111  23467899999 67 55444 4578999985433 2212222111  111235699999999665554 456


Q ss_pred             eEEEEEc
Q 040274          216 WSGILVP  222 (359)
Q Consensus       216 ~~~i~~~  222 (359)
                      .+..+..
T Consensus       296 ~I~~~~~  302 (433)
T 4hw6_A          296 CIYRVDY  302 (433)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEeC
Confidence            6666543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.32  E-value=0.065  Score=47.34  Aligned_cols=149  Identities=7%  Similarity=-0.097  Sum_probs=88.7

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CcceEEeecCCCCeEEEEEecCC-CEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTT----SALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~----~~~~~~~~~h~~~v~~l~~~p~g-~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .+..++|++.+..|+.+ ..++.|..+++..    ......+........++++++.+ +++++-...+.|.++|+....
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~  110 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence            67899999966555554 4568999999876    22222232223456889998754 455555677899999987543


Q ss_pred             eeEee---cCCceeEEEcCCC--cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-C
Q 040274          143 VLQTL---TGHAKTLDFSQKG--LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-M  214 (359)
Q Consensus       143 ~~~~~---~~~v~~~~~s~~g--l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-d  214 (359)
                      ....+   ......++++|.+  ++.+..+  +.|..+++...  ....+...   .......++|+|++..|+.+.. .
T Consensus       111 ~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~---~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECS---SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEEC---CCCCceEEEEeccCCEEEEEECCC
Confidence            22222   2356899999854  4444443  67888875322  22222111   1125788999998777665553 4


Q ss_pred             CeEEEEEc
Q 040274          215 GWSGILVP  222 (359)
Q Consensus       215 g~~~i~~~  222 (359)
                      +.+..+..
T Consensus       186 ~~I~~~d~  193 (316)
T 1ijq_A          186 HSISSIDV  193 (316)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEec
Confidence            45555544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.29  E-value=0.015  Score=58.45  Aligned_cols=141  Identities=11%  Similarity=-0.007  Sum_probs=90.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee----cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML----YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~----~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      |.++...+++..|..|+.++-|.+||..++....-..    .+...|.++...++|.+.+... + -|.+||..++....
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEE
Confidence            5567777777756777777789999998775432211    1345789999999888766554 4 48899988765432


Q ss_pred             ee---------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccc---cccCCCCcceeEEEEccCCCEEEEEe
Q 040274          146 TL---------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYM---GNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       146 ~~---------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      ..         ...|.++...++| +..++. +.|.+||.... ..  .+.   .....+...|.++...++|.+.+.+.
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~-~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL-DI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT-EE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC-eE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            21         1357888899999 666666 66888885332 21  111   00011223688999988888655443


Q ss_pred             CCCeE
Q 040274          213 SMGWS  217 (359)
Q Consensus       213 ~dg~~  217 (359)
                       +|..
T Consensus       562 -~Gl~  565 (795)
T 4a2l_A          562 -EGFY  565 (795)
T ss_dssp             -SCEE
T ss_pred             -CCce
Confidence             4643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.28  E-value=0.002  Score=62.25  Aligned_cols=105  Identities=13%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCC-------------CCe--------------------------EEEEEecCC
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQ-------------GPV--------------------------SALAFHPNG  121 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~p~g  121 (359)
                      .++.++.+|.++++|..+++.+..+....             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            56778889999999999998877654211             111                          245788877


Q ss_pred             CEEEEec-------------------------------------CCCeEEEEEcCCCeeeEeec--CCceeEEE-cCCC-
Q 040274          122 HLMATTG-------------------------------------KECKIKIWDLRKYEVLQTLT--GHAKTLDF-SQKG-  160 (359)
Q Consensus       122 ~~l~s~~-------------------------------------~d~~i~vwd~~~~~~~~~~~--~~v~~~~~-s~~g-  160 (359)
                      .+|+..+                                     .++.|..||+.+++.+..+.  ..+.+..+ ..++ 
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~  477 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL  477 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence            7766543                                     35789999999999887773  23333222 2345 


Q ss_pred             cEEEEcCCcEEEEcCCCCCccccccc
Q 040274          161 LLAVGTGSFAQILGDFSGSHNYSRYM  186 (359)
Q Consensus       161 l~~~~~d~~i~v~d~~~~~~~~~~~~  186 (359)
                      ++.++.++.|++||..++ +.+-.+.
T Consensus       478 v~~g~~dg~l~a~D~~tG-~~lw~~~  502 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDG-KELWNFK  502 (571)
T ss_dssp             EEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCC-CEEEEEe
Confidence            666778999999997665 4443333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.26  E-value=0.0095  Score=58.54  Aligned_cols=72  Identities=7%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             eEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEeecCCC-CeEEEEEecCCCEEEEec-CC-----CeEEEEEcCCCe
Q 040274           71 DLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLIKMLYHQG-PVSALAFHPNGHLMATTG-KE-----CKIKIWDLRKYE  142 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~p~g~~l~s~~-~d-----~~i~vwd~~~~~  142 (359)
                      .++++.+++.++++|+. +..+.+||+.+.+....-..+.. .-.++++.++|++++.|| .+     ..+.+||..+..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            34677788999999884 45899999887653322111222 224556667999999988 44     468999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.25  E-value=0.014  Score=56.59  Aligned_cols=75  Identities=8%  Similarity=0.086  Sum_probs=53.7

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCcceEEeec--CC--------CCeEEEEE
Q 040274           72 LMRVNPFNGVVSLGHS--------------------G----GTVTMWKPTTSALLIKMLY--HQ--------GPVSALAF  117 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~--------------------d----g~v~lwd~~~~~~~~~~~~--h~--------~~v~~l~~  117 (359)
                      .++++|...+++.+..                    |    +.|..+|+.+++.+..+..  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677787777776663                    2    5899999999999888753  32        1221 122


Q ss_pred             e-cCCC---EEEEecCCCeEEEEEcCCCeeeEee
Q 040274          118 H-PNGH---LMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus       118 ~-p~g~---~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      . .+|+   .++.++.+|.++++|..+|+.+..+
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence            2 4674   7888999999999999999887655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.23  E-value=0.036  Score=49.94  Aligned_cols=93  Identities=13%  Similarity=0.199  Sum_probs=57.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEee---cCCCCeEEEEEecC---CCEEEEecC-C-----CeEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--LIKML---YHQGPVSALAFHPN---GHLMATTGK-E-----CKIK  134 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--~~~~~---~h~~~v~~l~~~p~---g~~l~s~~~-d-----~~i~  134 (359)
                      ....|+|.|+|.++++ ..+|.|.+++  ++..  +..+.   ........++|+|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            6788999999985544 5669999998  3332  11111   12346789999998   444444333 2     6788


Q ss_pred             EEEcCCCe-----ee-Eeec---C---CceeEEEcCCC-cEEE
Q 040274          135 IWDLRKYE-----VL-QTLT---G---HAKTLDFSQKG-LLAV  164 (359)
Q Consensus       135 vwd~~~~~-----~~-~~~~---~---~v~~~~~s~~g-l~~~  164 (359)
                      .|+...+.     .+ ..++   +   ....++|+|+| ++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            88876431     22 2233   1   24789999999 4433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.19  E-value=0.017  Score=55.97  Aligned_cols=75  Identities=9%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcceEEeecCCC----------CeEEEEEe-cCC---
Q 040274           72 LMRVNPFNGVVSLGHSG----------------GTVTMWKPTTSALLIKMLYHQG----------PVSALAFH-PNG---  121 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~d----------------g~v~lwd~~~~~~~~~~~~h~~----------~v~~l~~~-p~g---  121 (359)
                      .+++.+...+++.++.+                ++|..+|+.|++.+..+.....          ++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45677777788877765                3899999999999888764221          121 2222 467   


Q ss_pred             CEEEEecCCCeEEEEEcCCCeeeEee
Q 040274          122 HLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus       122 ~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      ..++.++.+|.++++|..+|+.+...
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecc
Confidence            46778899999999999999887655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.18  E-value=0.11  Score=45.94  Aligned_cols=150  Identities=10%  Similarity=-0.066  Sum_probs=87.2

Q ss_pred             ceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec--CCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~~~  145 (359)
                      ....+++++.+. ++++-...+.|.++++........+.........++++|.+.+|+.+.  ..+.|..+++.. ....
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRF  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeE
Confidence            456788887444 444445667899999875433332323445678999999765655554  357888888863 2222


Q ss_pred             ee-c---CCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          146 TL-T---GHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       146 ~~-~---~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      .+ .   ...+.++|++++  + ++-+..+.|..+|+...  ....+...   .......+++. .+.++.+-...+.+.
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~---~~~~P~glav~-~~~lywtd~~~~~V~  232 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQAVVKG---SLPHPFALTLF-EDILYWTDWSTHSIL  232 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECS---CCSCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC--ceEEEecC---CCCCceEEEEe-CCEEEEEecCCCeEE
Confidence            22 2   245899999865  4 44444678999985422  22222211   11235666764 334444555566666


Q ss_pred             EEEcCCC
Q 040274          219 ILVPRSS  225 (359)
Q Consensus       219 i~~~gs~  225 (359)
                      .+...++
T Consensus       233 ~~~~~~G  239 (318)
T 3sov_A          233 ACNKYTG  239 (318)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            6665444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.16  E-value=0.094  Score=48.07  Aligned_cols=148  Identities=5%  Similarity=-0.094  Sum_probs=90.2

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCC----cceEEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTS----ALLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .+..|+|++.+..|+.+. .++.|+.+++...    .....+.........+++++ .++++++-...+.|.+.|+....
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~  192 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  192 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence            688999999666665554 5678999998752    22333333445678899998 45555565667899999987543


Q ss_pred             eeEeec---CCceeEEEcCCC--cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-C
Q 040274          143 VLQTLT---GHAKTLDFSQKG--LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-M  214 (359)
Q Consensus       143 ~~~~~~---~~v~~~~~s~~g--l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-d  214 (359)
                      ....+.   .....|+++|.+  ++.+..  .+.|..+++...  ....+...   .-.....|+++|++..|+.+.. .
T Consensus       193 ~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--~~~~~~~~---~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          193 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--SCEEEECS---SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--ccEEEEEC---CCCceEEEEEEeCCCEEEEEECCC
Confidence            322222   346889999854  444432  367888885332  22222111   1125788999998877766643 4


Q ss_pred             CeEEEEE
Q 040274          215 GWSGILV  221 (359)
Q Consensus       215 g~~~i~~  221 (359)
                      +.|..+.
T Consensus       268 ~~I~~~d  274 (400)
T 3p5b_L          268 HSISSID  274 (400)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            4454444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.11  E-value=0.16  Score=46.46  Aligned_cols=150  Identities=13%  Similarity=-0.024  Sum_probs=84.9

Q ss_pred             ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~  145 (359)
                      ....|++++. +.++++-...+.|.+.++........+........+|+++|.+.+|+.+..  .+.|...++.......
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            4567888874 444444456778989888755443334334455789999996666555542  3678888887433222


Q ss_pred             eec---CCceeEEEcCCC--cEEE-EcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          146 TLT---GHAKTLDFSQKG--LLAV-GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       146 ~~~---~~v~~~~~s~~g--l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      .+.   ...+.|++++++  ++.+ +..+.|..+|+...  ....+..... .-.....+++. .+.++.+-...+.+..
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~-~l~~P~gl~v~-~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CCEEEEECSS-TTSSEEEEEEE-TTEEEEEESSSCSEEE
T ss_pred             EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccEEEEeCCC-CCCCCEEEEEe-CCEEEEecCCCCeEEE
Confidence            222   356899999876  4433 34578999985332  2222221100 11134566652 3334444445555555


Q ss_pred             EEc
Q 040274          220 LVP  222 (359)
Q Consensus       220 ~~~  222 (359)
                      +..
T Consensus       316 ~~~  318 (400)
T 3p5b_L          316 ANR  318 (400)
T ss_dssp             EES
T ss_pred             EEc
Confidence            553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.10  E-value=0.13  Score=45.34  Aligned_cols=151  Identities=12%  Similarity=-0.046  Sum_probs=87.0

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-C-CeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-E-CKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d-~~i~vwd~~~~~~~~  145 (359)
                      ....|++++.+..| ++-..++.|.++++........+........+++++|.+..|+.+.. . +.|..+++.. ....
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            45678887754444 44456788999998754333223333456789999996665555443 2 6888888863 3333


Q ss_pred             ee----cCCceeEEEcCCC--cE-EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          146 TL----TGHAKTLDFSQKG--LL-AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       146 ~~----~~~v~~~~~s~~g--l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      .+    -...+.++|++++  ++ +-+..+.|..+|+...  ....+..... .......+++. .+.++.+-...+.+.
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~~-~~~~P~giav~-~~~ly~~d~~~~~V~  232 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIF  232 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecCC-ccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence            33    2346899999876  44 4444578999995422  2222221100 11135667774 344445555566666


Q ss_pred             EEEcCC
Q 040274          219 ILVPRS  224 (359)
Q Consensus       219 i~~~gs  224 (359)
                      .+...+
T Consensus       233 ~~~~~~  238 (316)
T 1ijq_A          233 SANRLT  238 (316)
T ss_dssp             EEETTT
T ss_pred             EEeCCC
Confidence            665533

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.06  E-value=0.016  Score=48.13  Aligned_cols=133  Identities=11%  Similarity=-0.042  Sum_probs=78.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCc------ceEEeecC--CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee-----
Q 040274           77 PFNGVVSLGHSGGTVTMWKPTTSA------LLIKMLYH--QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV-----  143 (359)
Q Consensus        77 p~~~~l~tg~~dg~v~lwd~~~~~------~~~~~~~h--~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~-----  143 (359)
                      |...+|+....| +|+.=.+.++.      ....+ ++  -..+..++|+|+|.+.+.  .+|.++-.+..+...     
T Consensus         2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~   77 (236)
T 1tl2_A            2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG   77 (236)
T ss_dssp             CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH
T ss_pred             CcceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc
Confidence            345567777777 76665555443      11222 33  247789999999987666  777777777654221     


Q ss_pred             -eEee-c-C--CceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccccccc-CC-CCcceeEEEEccCCCEEEEEeCCC
Q 040274          144 -LQTL-T-G--HAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNS-MV-KGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       144 -~~~~-~-~--~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                       -..+ . +  .-.++.|.|+| |+++ .||.|+-++..+.....-...... +. .-..+..|.|+|+|.+.++.  ++
T Consensus        78 s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           78 RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence             1111 0 0  02688999999 5555 779998887443322211111100 00 11258999999999988777  65


Q ss_pred             e
Q 040274          216 W  216 (359)
Q Consensus       216 ~  216 (359)
                      .
T Consensus       155 ~  155 (236)
T 1tl2_A          155 Q  155 (236)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.05  E-value=0.15  Score=45.16  Aligned_cols=107  Identities=9%  Similarity=0.014  Sum_probs=76.6

Q ss_pred             eeEEEE---cCCCCEEEEEeC-------------CCeEEEEeCC---CCcceEEee--cC-----------CCCeEEEEE
Q 040274           70 TDLMRV---NPFNGVVSLGHS-------------GGTVTMWKPT---TSALLIKML--YH-----------QGPVSALAF  117 (359)
Q Consensus        70 v~~l~~---sp~~~~l~tg~~-------------dg~v~lwd~~---~~~~~~~~~--~h-----------~~~v~~l~~  117 (359)
                      +..|.|   .|++.++++...             +..|..||+.   +++.+....  ..           ....+.++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            578999   688777775442             5779999999   787765543  11           124789999


Q ss_pred             ecCCCEEEEecCC-CeEEEEEcCCCeeeEee---c------CCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          118 HPNGHLMATTGKE-CKIKIWDLRKYEVLQTL---T------GHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       118 ~p~g~~l~s~~~d-~~i~vwd~~~~~~~~~~---~------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      .++|+..++++.- +.|...|.... .+..+   .      ...+.|+++|+|  |++...++.|..+|+..
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            9999999988887 88887776633 22222   1      115799999999  55555689999999763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.036  Score=52.20  Aligned_cols=149  Identities=9%  Similarity=0.029  Sum_probs=88.2

Q ss_pred             ceeEEEEcCC-CCEEEEE-eCCCeEEEEeCCCCcceEEeecC---CCCeEEEEE-------ecCCCEEEEecCCC-----
Q 040274           69 RTDLMRVNPF-NGVVSLG-HSGGTVTMWKPTTSALLIKMLYH---QGPVSALAF-------HPNGHLMATTGKEC-----  131 (359)
Q Consensus        69 ~v~~l~~sp~-~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h---~~~v~~l~~-------~p~g~~l~s~~~d~-----  131 (359)
                      ....|+|+|. +..|+.+ ...+.|++.|+.++.....+...   ......++|       +++|.+|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568999993 4444444 44467889998876544333221   224789999       99999666655443     


Q ss_pred             --eEEEEEcCC-Ceee-----Eee--cCCceeEEEcCC-C-cEEEE-cCCcEEEEcCC-------CCCcc----------
Q 040274          132 --KIKIWDLRK-YEVL-----QTL--TGHAKTLDFSQK-G-LLAVG-TGSFAQILGDF-------SGSHN----------  181 (359)
Q Consensus       132 --~i~vwd~~~-~~~~-----~~~--~~~v~~~~~s~~-g-l~~~~-~d~~i~v~d~~-------~~~~~----------  181 (359)
                        .|.+++... +...     ..+  -.+...++++|+ + |+.+. .++.|..||+.       +. ..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg-~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG-GSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT-CCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc-eeeccccccccc
Confidence              366776443 2221     122  235678899995 4 55544 45779999965       22 22          


Q ss_pred             -ccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeEEEE
Q 040274          182 -YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSGIL  220 (359)
Q Consensus       182 -~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~~i~  220 (359)
                       ...+....  .......++|+|+|++|+++. ..+.|+.+
T Consensus       299 ~~~~l~~~~--~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          299 TFKQLFTIA--DPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             TEEEEEECS--SSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccceeEecC--CCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence             01111111  223467899999999655554 45555554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.01  E-value=0.0079  Score=59.30  Aligned_cols=129  Identities=15%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCC-----------C-Ce------------------------EEEEEecCCCEE
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQ-----------G-PV------------------------SALAFHPNGHLM  124 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-----------~-~v------------------------~~l~~~p~g~~l  124 (359)
                      .++.++.+|.++++|..+|+.+.......           + ++                        ..++++|+..++
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~  395 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence            57888899999999999998874432111           0 00                        126778876665


Q ss_pred             EEe------------------------------------cCCCeEEEEEcCCCeeeEeec--CCceeEEEcC-CC-cEEE
Q 040274          125 ATT------------------------------------GKECKIKIWDLRKYEVLQTLT--GHAKTLDFSQ-KG-LLAV  164 (359)
Q Consensus       125 ~s~------------------------------------~~d~~i~vwd~~~~~~~~~~~--~~v~~~~~s~-~g-l~~~  164 (359)
                      +..                                    ..+|.|..||+.+++.+..+.  .+.....+.. .+ ++++
T Consensus       396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g  475 (668)
T 1kv9_A          396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG  475 (668)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE
Confidence            531                                    134889999999999887763  3333333333 34 6677


Q ss_pred             EcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEeC
Q 040274          165 GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGHS  213 (359)
Q Consensus       165 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~~  213 (359)
                      +.++.|++||..++ +.+..+........   .-+.+..+|+ ++++++.
T Consensus       476 ~~dg~l~a~d~~tG-~~l~~~~~~~~~~~---~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          476 TAAGQMHAYSADKG-EALWQFEAQSGIVA---APMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             CTTSEEEEEETTTC-CEEEEEECSSCCCS---CCEEEEETTEEEEEEEEC
T ss_pred             CCcccchhhhhhcC-hhheEecCCCCccc---CceEEEECCEEEEEEEec
Confidence            78999999996555 44444433322112   2234455665 5555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.97  E-value=0.036  Score=52.17  Aligned_cols=105  Identities=12%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             ceeEEEE-------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccce-----EEeecCCCCeEEEEEec-CCCEEEEe
Q 040274           69 RTDLMRV-------NPFNGVVSLGHSGG-------TVTMWKPTT-SALL-----IKMLYHQGPVSALAFHP-NGHLMATT  127 (359)
Q Consensus        69 ~v~~l~~-------sp~~~~l~tg~~dg-------~v~lwd~~~-~~~~-----~~~~~h~~~v~~l~~~p-~g~~l~s~  127 (359)
                      ....|+|       ++++.+|+++...+       .|.+++... +...     ..+.. ....++++++| ++.++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEE
Confidence            3688999       99998666665543       366665443 2221     22221 12346788899 56666777


Q ss_pred             cCCCeEEEEEcC-------CCee--------------eEeec--CCceeEEEcCCC--cEEE-EcCCcEEEEc
Q 040274          128 GKECKIKIWDLR-------KYEV--------------LQTLT--GHAKTLDFSQKG--LLAV-GTGSFAQILG  174 (359)
Q Consensus       128 ~~d~~i~vwd~~-------~~~~--------------~~~~~--~~v~~~~~s~~g--l~~~-~~d~~i~v~d  174 (359)
                      ..++.|..+|+.       ++..              +....  .....|+|+|+|  ++.+ +..+.|+.++
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence            788899999997       4443              22222  335789999999  3333 3457788865

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.93  E-value=0.059  Score=48.57  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ceEEe---ecCCCCeEEEEEecC---CCEEEEecC----C----CeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA-LLIKM---LYHQGPVSALAFHPN---GHLMATTGK----E----CKI  133 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~-~~~~~---~~h~~~v~~l~~~p~---g~~l~s~~~----d----~~i  133 (359)
                      ....|+|.|+|.++ ++..+|.|.+++. ++. .+..+   .........|+|+|+   +..|+.+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYL-VTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEE-EEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            57889999998744 4556699999974 343 22221   112345789999997   444444332    3    568


Q ss_pred             EEEEcCCC-------eee-Eeec---C-CceeEEEcCCC-cEEE
Q 040274          134 KIWDLRKY-------EVL-QTLT---G-HAKTLDFSQKG-LLAV  164 (359)
Q Consensus       134 ~vwd~~~~-------~~~-~~~~---~-~v~~~~~s~~g-l~~~  164 (359)
                      ..|+....       +.+ ..++   . ....+.|.|+| |+.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            88887643       112 1232   1 24789999999 4433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.89  E-value=0.097  Score=46.92  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=80.7

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEe----ecCCCCeEEEEEecC----CCEEEEe--cCCCeEEE
Q 040274           68 RRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL--IKM----LYHQGPVSALAFHPN----GHLMATT--GKECKIKI  135 (359)
Q Consensus        68 ~~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~--~~~----~~h~~~v~~l~~~p~----g~~l~s~--~~d~~i~v  135 (359)
                      .....|+|.|+|.++++-...|.|++++..++...  ..+    ....+....|+|+|+    +.+.++-  ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            36789999999987777655899999987655432  111    123456789999995    4443331  24556777


Q ss_pred             EEcCCC----------eeeE-eec---CC-ceeEEEcCCC--cEEEEc-------------CCcEEEEcCCCCCc-----
Q 040274          136 WDLRKY----------EVLQ-TLT---GH-AKTLDFSQKG--LLAVGT-------------GSFAQILGDFSGSH-----  180 (359)
Q Consensus       136 wd~~~~----------~~~~-~~~---~~-v~~~~~s~~g--l~~~~~-------------d~~i~v~d~~~~~~-----  180 (359)
                      |.+..+          +.+. .++   .| ...|.|.|+|  +++.+.             .+.|.-++....-.     
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            766541          1222 222   12 3679999999  444332             24454445321100     


Q ss_pred             -ccccc-ccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          181 -NYSRY-MGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       181 -~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                       ....+ .+|.     ....++|+|+|.+.++-.
T Consensus       192 ~~~~i~a~G~R-----Np~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          192 PGSPVYSYGHR-----NVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             TTCCEEEBCCS-----BCCEEEECTTCCEEEEEC
T ss_pred             CCCeEEeeCCC-----CcceEEECCCCCEEEEec
Confidence             00111 1222     367899999987666544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.85  E-value=0.13  Score=46.11  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCC---CCEEEEEeC-C-----CeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPF---NGVVSLGHS-G-----GTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~---~~~l~tg~~-d-----g~v~lwd~~   97 (359)
                      +.|+|.|||+++++-..                         ....|+|+|+   +..|+++.. +     +.|..|+..
T Consensus        34 ~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~  113 (352)
T 2ism_A           34 WALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL  113 (352)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             eEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence            89999999997765422                         4578899998   555555443 2     578888876


Q ss_pred             CCc-----ceEE-ee---cCCCCeEEEEEecCCCEEEEecC-------------CCeEEEEEcCCC------------e-
Q 040274           98 TSA-----LLIK-ML---YHQGPVSALAFHPNGHLMATTGK-------------ECKIKIWDLRKY------------E-  142 (359)
Q Consensus        98 ~~~-----~~~~-~~---~h~~~v~~l~~~p~g~~l~s~~~-------------d~~i~vwd~~~~------------~-  142 (359)
                      .+.     .+.. +.   +.......++|.|+|.++++.+.             .+.|..+|....            . 
T Consensus       114 ~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~  193 (352)
T 2ism_A          114 GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGAR  193 (352)
T ss_dssp             SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSC
T ss_pred             CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCC
Confidence            431     1211 22   11112368999999987777542             256666665430            0 


Q ss_pred             -eeEee-cCCceeEEEcC-CC-cEEEEc
Q 040274          143 -VLQTL-TGHAKTLDFSQ-KG-LLAVGT  166 (359)
Q Consensus       143 -~~~~~-~~~v~~~~~s~-~g-l~~~~~  166 (359)
                       .+... -.....++|+| +| ++++..
T Consensus       194 ~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          194 PEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             ccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence             11111 12357899999 66 555544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.82  E-value=0.0086  Score=57.98  Aligned_cols=123  Identities=9%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCC-------------CCe--------------------------------EEE
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQ-------------GPV--------------------------------SAL  115 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~l  115 (359)
                      .++.++.+|.++++|..+++.+..+....             .++                                ..+
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~  417 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM  417 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred             EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence            67888999999999999998877654321             000                                134


Q ss_pred             EEecCCCEEEEec---------------------------------CCCeEEEEEcCCCeeeEeec--CCcee-EEEcCC
Q 040274          116 AFHPNGHLMATTG---------------------------------KECKIKIWDLRKYEVLQTLT--GHAKT-LDFSQK  159 (359)
Q Consensus       116 ~~~p~g~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~--~~v~~-~~~s~~  159 (359)
                      +++|+..++++..                                 .+|.|..||+.+++.+..++  .++.. ......
T Consensus       418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag  497 (582)
T 1flg_A          418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG  497 (582)
T ss_dssp             EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETT
T ss_pred             eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCC
Confidence            5666544444322                                 36889999999999877763  22222 112235


Q ss_pred             C-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          160 G-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       160 g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      | ++.++.|+.++.||..++ +.+-.+.....   ....-+.|..+|+.
T Consensus       498 glvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g---~~a~P~~y~~~G~q  542 (582)
T 1flg_A          498 NLVFTGTGDGYFKAFDAKSG-KELWKFQTGSG---IVSPPITWEQDGEQ  542 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEE
T ss_pred             CEEEEECCCCcEEEEECCCC-CEEEEecCCCC---cccCceEEEECCEE
Confidence            5 667788999999997665 44433333321   11122556667753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.79  E-value=0.066  Score=48.17  Aligned_cols=140  Identities=14%  Similarity=0.078  Sum_probs=77.5

Q ss_pred             eeEEEEcC--CCC--EEEEEeC--CCeEEEEeCCCCcc----eEEeecC-CCCeEEEEEecCCCEEEEecC---------
Q 040274           70 TDLMRVNP--FNG--VVSLGHS--GGTVTMWKPTTSAL----LIKMLYH-QGPVSALAFHPNGHLMATTGK---------  129 (359)
Q Consensus        70 v~~l~~sp--~~~--~l~tg~~--dg~v~lwd~~~~~~----~~~~~~h-~~~v~~l~~~p~g~~l~s~~~---------  129 (359)
                      ...|.+.+  ++.  ++++-+.  +.+|.+|++.....    +..+.+. -...+.+.+.++|.++++...         
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence            34555544  343  3344333  46777877654322    2223222 235789999999988777541         


Q ss_pred             --------CCeEEEEEcCCCeeeEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccc--cccccccCCCCcce
Q 040274          130 --------ECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNY--SRYMGNSMVKGYQI  196 (359)
Q Consensus       130 --------d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~v  196 (359)
                              .|.|+.||...-+.+..--...+.++|||||   +++-+..+.|..|++...+...  ..+ ..    ....
T Consensus       194 ~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~----~g~P  268 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF----DTLV  268 (355)
T ss_dssp             HHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC----SSEE
T ss_pred             chhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC----CCCC
Confidence                    2556666653212111112346899999999   3444456899999965332221  112 11    1246


Q ss_pred             eEEEEcc-CCCEEEEEeCC
Q 040274          197 GKVSFRP-YEDVLGIGHSM  214 (359)
Q Consensus       197 ~~~~~sp-~~~~l~~g~~d  214 (359)
                      -.+++.+ +|++.+++..+
T Consensus       269 DGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEECTTTCCEEEEEESC
T ss_pred             ceEEEeCCCCcEEEEecCC
Confidence            7788888 48766655533

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.76  E-value=0.26  Score=43.50  Aligned_cols=148  Identities=9%  Similarity=-0.018  Sum_probs=88.9

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcce-EEeecCCCCeEEEEEec-CCCEEEEecCCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALL-IKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~p-~g~~l~s~~~d~~i~vwd~~~~~~~~  145 (359)
                      .+.+++|++.+..|+.+ ..++.|..+++..+... ..+........++++++ ++.++++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            67789999955555444 46788999998866322 22222334567899987 45555565667889999987532221


Q ss_pred             ee---cCCceeEEEcCC-C-cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeE
Q 040274          146 TL---TGHAKTLDFSQK-G-LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWS  217 (359)
Q Consensus       146 ~~---~~~v~~~~~s~~-g-l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~  217 (359)
                      .+   ......++++|. | ++.+..  .+.|..+++...  ....+...   .-.....++|+|++..|+.+.. .+.|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~---~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINS---EIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC--SCEEEECS---SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC--CeEEEEEC---CCCCccEEEEeccCCEEEEEECCCCEE
Confidence            12   234688999986 4 444442  467888875322  22222111   1124688999997776665543 4445


Q ss_pred             EEEE
Q 040274          218 GILV  221 (359)
Q Consensus       218 ~i~~  221 (359)
                      ..+.
T Consensus       191 ~~~d  194 (318)
T 3sov_A          191 HKSN  194 (318)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            4443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.67  E-value=0.14  Score=47.89  Aligned_cols=97  Identities=18%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEeec------CCCCeEEEEEecC---CCEEEEecC--------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL--IKMLY------HQGPVSALAFHPN---GHLMATTGK--------  129 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~--~~~~~------h~~~v~~l~~~p~---g~~l~s~~~--------  129 (359)
                      ..+.|+|.|+|.++++-...+.|.+++..++...  ..+..      ..+.+..|+|+|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            5678999999887766544457888876555432  22211      2456779999994   444443332        


Q ss_pred             -----CCeEEEEEcCCC-------eeeE-eec---CC-ceeEEEcCCC--cEEEE
Q 040274          130 -----ECKIKIWDLRKY-------EVLQ-TLT---GH-AKTLDFSQKG--LLAVG  165 (359)
Q Consensus       130 -----d~~i~vwd~~~~-------~~~~-~~~---~~-v~~~~~s~~g--l~~~~  165 (359)
                           ...|..|++...       +.+. .++   .| ...|.|.|+|  +++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 235666665421       1222 122   12 5789999999  44443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.63  E-value=0.024  Score=51.91  Aligned_cols=103  Identities=14%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----------c--eEEeec------CCCCeEEEEEec---CCCEEEEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA----------L--LIKMLY------HQGPVSALAFHP---NGHLMATT  127 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~----------~--~~~~~~------h~~~v~~l~~~p---~g~~l~s~  127 (359)
                      .+..+..||+|.+|+..+. ..|.|-.+..+.          .  ...+.-      ...+|..+-|||   .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4666777888877777643 466666655221          0  112221      256799999999   56789999


Q ss_pred             cCCCeEEEEEcCCC--eeeEee-------c-----CCceeEEEcCCC--cEEEE--cCCcEEEE
Q 040274          128 GKECKIKIWDLRKY--EVLQTL-------T-----GHAKTLDFSQKG--LLAVG--TGSFAQIL  173 (359)
Q Consensus       128 ~~d~~i~vwd~~~~--~~~~~~-------~-----~~v~~~~~s~~g--l~~~~--~d~~i~v~  173 (359)
                      ..|+.|++||+...  ++. .+       .     ..+.+++|+++|  +++.+  .+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999852  222 22       1     347899999988  56644  66777644

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.60  E-value=0.021  Score=55.38  Aligned_cols=124  Identities=11%  Similarity=0.016  Sum_probs=75.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCC-------------CCe--------------------------EEEEEecC
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQ-------------GPV--------------------------SALAFHPN  120 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~p~  120 (359)
                      ..++.++.+|.++++|..+++.+.......             .++                          ..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467778899999999999998877654211             111                          24567776


Q ss_pred             CCEEEEe---------------------------------c------CCCeEEEEEcCCCeeeEeec--CCce-eEEEcC
Q 040274          121 GHLMATT---------------------------------G------KECKIKIWDLRKYEVLQTLT--GHAK-TLDFSQ  158 (359)
Q Consensus       121 g~~l~s~---------------------------------~------~d~~i~vwd~~~~~~~~~~~--~~v~-~~~~s~  158 (359)
                      ..++++.                                 +      .+|.|..||+.+++.+...+  .+.. ......
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ta  483 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA  483 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEec
Confidence            5555442                                 1      34789999999999877773  2222 212223


Q ss_pred             CC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          159 KG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       159 ~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                      .| ++.++.|+.++.||..++ +.+-.+.....   ....-+.|..+|+.
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g---~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSG---AIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCeEEEEECCCC-CEEEEeeCCCC---cEeccEEEEeCCEE
Confidence            45 666788999999997665 44433332221   11223455566653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.57  E-value=0.098  Score=47.04  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             EEeccceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceEEe----ecCCCCeEEEEEecC----CCEEEEecC----
Q 040274           64 AVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--LLIKM----LYHQGPVSALAFHPN----GHLMATTGK----  129 (359)
Q Consensus        64 ~~~~~~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--~~~~~----~~h~~~v~~l~~~p~----g~~l~s~~~----  129 (359)
                      +.+-.....|+|.|+|..|+++...|.|++++.....  .+..+    ....+....++|+|+    +.+.++-+.    
T Consensus        14 a~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           14 QDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             EEEESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             ECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            3333367899999999834445567999999854221  11111    112345689999995    444444222    


Q ss_pred             ---CCeEEEEEcCCC-------eee-EeecC-----C-ceeEEEcCCC-cEEE
Q 040274          130 ---ECKIKIWDLRKY-------EVL-QTLTG-----H-AKTLDFSQKG-LLAV  164 (359)
Q Consensus       130 ---d~~i~vwd~~~~-------~~~-~~~~~-----~-v~~~~~s~~g-l~~~  164 (359)
                         ...|..|++...       +.+ ..++.     | ...+.|.|+| |+.+
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  146 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA  146 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence               235777766532       111 11221     1 4689999999 4444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.46  E-value=0.21  Score=44.82  Aligned_cols=127  Identities=7%  Similarity=0.066  Sum_probs=71.9

Q ss_pred             CCCeEEEEeCCCC--cce-EEeec-----CCCCeEEEEEec--CCC-EEEEec-C--CCeEEEEEcCCC--e--eeEeec
Q 040274           87 SGGTVTMWKPTTS--ALL-IKMLY-----HQGPVSALAFHP--NGH-LMATTG-K--ECKIKIWDLRKY--E--VLQTLT  148 (359)
Q Consensus        87 ~dg~v~lwd~~~~--~~~-~~~~~-----h~~~v~~l~~~p--~g~-~l~s~~-~--d~~i~vwd~~~~--~--~~~~~~  148 (359)
                      .+|.|.++|+.+.  +.. ..+.+     .......+.+.+  ++. +|+.+. .  +.+|.+|++...  .  .+.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998743  211 12222     224667888766  454 344442 2  467888877653  2  233443


Q ss_pred             C----CceeEEEcCCC-cEEEEc------------------CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC
Q 040274          149 G----HAKTLDFSQKG-LLAVGT------------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       149 ~----~v~~~~~s~~g-l~~~~~------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      +    ..+++.+.++| +++++.                  .+.|..||.  . . .......-    ...+.++|+||+
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~-~~~~~~~l----~~pNGia~spDg  232 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-D-VRVVAEGF----DFANGINISPDG  232 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-C-CEEEEEEE----SSEEEEEECTTS
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-e-EEEeecCC----cccCcceECCCC
Confidence            2    35889999999 555542                  134555653  1 2 22222211    146889999999


Q ss_pred             CEEEEEeC-CCeEEEEE
Q 040274          206 DVLGIGHS-MGWSGILV  221 (359)
Q Consensus       206 ~~l~~g~~-dg~~~i~~  221 (359)
                      +.|+++.. .+.+..|.
T Consensus       233 ~~lYvadt~~~~I~~~~  249 (355)
T 3sre_A          233 KYVYIAELLAHKIHVYE  249 (355)
T ss_dssp             SEEEEEEGGGTEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEE
Confidence            88776654 45554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.40  E-value=0.033  Score=54.71  Aligned_cols=108  Identities=14%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             eEEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCcc--eEEee-cCCCCeEEEEEecCCCEEEEecC-CCeEE
Q 040274           71 DLMRVNP-FNGVVSLGHSGG-----------TVTMWKPTTSAL--LIKML-YHQGPVSALAFHPNGHLMATTGK-ECKIK  134 (359)
Q Consensus        71 ~~l~~sp-~~~~l~tg~~dg-----------~v~lwd~~~~~~--~~~~~-~h~~~v~~l~~~p~g~~l~s~~~-d~~i~  134 (359)
                      ..+++.| ++.+++.|+.+.           .+.+||+.+++.  +..+. .+.....++++.+++.+++.||. +..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3566777 788888887542           588999988753  22332 23334456788899999999984 56899


Q ss_pred             EEEcCCCeeeE--eecCC--ceeEEEcCCC--cEEEE-cC-----CcEEEEcCCCC
Q 040274          135 IWDLRKYEVLQ--TLTGH--AKTLDFSQKG--LLAVG-TG-----SFAQILGDFSG  178 (359)
Q Consensus       135 vwd~~~~~~~~--~~~~~--v~~~~~s~~g--l~~~~-~d-----~~i~v~d~~~~  178 (359)
                      +||..+..-..  .+...  -.+++..++|  ++.++ .+     ..+.+||..+.
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            99998765322  22211  2345666777  55555 23     57899997543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.37  E-value=0.38  Score=48.13  Aligned_cols=139  Identities=6%  Similarity=-0.097  Sum_probs=83.4

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----cceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTS----ALLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~  142 (359)
                      .+..|+|++.+..|+ +-...+.|+.+++...    .....+........+|++++.+.. +++-...+.|.+.++....
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~  504 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  504 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence            678899998555554 4445678998988752    223333334456678999987654 4555567899999987543


Q ss_pred             eeEee---cCCceeEEEcCC-C-cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          143 VLQTL---TGHAKTLDFSQK-G-LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       143 ~~~~~---~~~v~~~~~s~~-g-l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      ....+   -.....|+++|. | |+.+..+  +.|.+.++...  ....+...   .......|++++.+..|+.+.
T Consensus       505 ~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~~~~lv~~---~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          505 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECS---SCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--ceEEEEeC---CCCCceEEEEecCCCeEEEEe
Confidence            32222   234689999987 4 4444432  67888875322  22222221   112577888887776666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.37  E-value=0.96  Score=45.27  Aligned_cols=108  Identities=15%  Similarity=0.035  Sum_probs=69.4

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~  145 (359)
                      ....|++++.+..|+ +-...+.|.+.++........+........+|+++|.+.+|+.+..  .+.|.+.++.......
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            456888888665444 4456788999998754433333334456789999997656555543  3678888887433322


Q ss_pred             eec---CCceeEEEcCCC--cEEE-EcCCcEEEEcCC
Q 040274          146 TLT---GHAKTLDFSQKG--LLAV-GTGSFAQILGDF  176 (359)
Q Consensus       146 ~~~---~~v~~~~~s~~g--l~~~-~~d~~i~v~d~~  176 (359)
                      .+.   ...+.|++++.+  |+.+ ...+.|..+++.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            222   356889999765  4443 345788888853

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.32  E-value=0.022  Score=56.43  Aligned_cols=106  Identities=14%  Similarity=0.025  Sum_probs=63.2

Q ss_pred             eeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeEe
Q 040274           70 TDLMRVNPFN-GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        70 v~~l~~sp~~-~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~~  146 (359)
                      ...|++++.+ .++++-...+.|.++++........+.........++++|.+.+|+.+..  .+.|.++++.... ...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence            3566776543 34444445678888888754333222222345578899996555555443  2678888876322 222


Q ss_pred             e----cCCceeEEEcCCC--c-EEEEcCCcEEEEcCC
Q 040274          147 L----TGHAKTLDFSQKG--L-LAVGTGSFAQILGDF  176 (359)
Q Consensus       147 ~----~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~  176 (359)
                      +    -...+.|+|+|++  | ++-+..+.|.++++.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            2    2346789999876  3 344445789999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.29  E-value=0.031  Score=55.32  Aligned_cols=149  Identities=6%  Similarity=-0.090  Sum_probs=85.8

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCC----CcceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTT----SALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~----~~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~  142 (359)
                      .+..|+|++.+..|+.+. .++.|+.+++.+    ......+.........|++++. ++++++-...+.|.++|+....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            577899999766666654 457899999875    2222222122233467888754 4455555567889999987543


Q ss_pred             eeEeec---CCceeEEEcCCC--cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CC
Q 040274          143 VLQTLT---GHAKTLDFSQKG--LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SM  214 (359)
Q Consensus       143 ~~~~~~---~~v~~~~~s~~g--l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~d  214 (359)
                      ....+.   .....++++|.+  |+.+...  +.|.++++...  ....+....   ......|+|+|++..|+.+. ..
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~--~~~~l~~~~---l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC--CCCEESCSS---CSSCCCEEECTTTCCEEEEETTT
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC--CeeEEEeCC---CCCccEEEEeccCCEEEEEecCC
Confidence            322222   346889999865  4444332  67888775322  222221111   12467799999876655544 44


Q ss_pred             CeEEEEEc
Q 040274          215 GWSGILVP  222 (359)
Q Consensus       215 g~~~i~~~  222 (359)
                      +.|.++..
T Consensus       562 ~~I~~~d~  569 (699)
T 1n7d_A          562 HSISSIDV  569 (699)
T ss_dssp             TEEEEECS
T ss_pred             CeEEEEcc
Confidence            55555443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.17  E-value=0.41  Score=42.72  Aligned_cols=134  Identities=13%  Similarity=0.119  Sum_probs=85.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC----CC---EEEE-ecC--CCeEEEEEcC--CCeeeEe
Q 040274           79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN----GH---LMAT-TGK--ECKIKIWDLR--KYEVLQT  146 (359)
Q Consensus        79 ~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~----g~---~l~s-~~~--d~~i~vwd~~--~~~~~~~  146 (359)
                      ..+++.....+-+.+||+ +|+.+..+..  +.++.+.+-|+    |.   ++++ .-.  +++|.+|++.  ++ .+..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence            456666667889999999 7888877743  66788887773    22   2233 333  5789999773  33 2444


Q ss_pred             ec----------CCceeEEE--cCC-C---cEEEEcCCcEEEEcCCCCC------ccccccccccCCCCcceeEEEEccC
Q 040274          147 LT----------GHAKTLDF--SQK-G---LLAVGTGSFAQILGDFSGS------HNYSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       147 ~~----------~~v~~~~~--s~~-g---l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      +.          ..+..+|+  +|. +   +++...++.+..|++....      +.+..+.     .+..+..|...+.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-----lgsq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-----MNSQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-----CSSCEEEEEEETT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-----CCCCcceEEEcCC
Confidence            31          33566777  774 4   4455567889888864321      1122222     2236888999999


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 040274          205 EDVLGIGHSMGWSGILV  221 (359)
Q Consensus       205 ~~~l~~g~~dg~~~i~~  221 (359)
                      ...|+++-.+.-+..+.
T Consensus       191 ~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             TTEEEEEETTTEEEEEE
T ss_pred             CCeEEEecccceEEEEe
Confidence            99999999886544443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.13  E-value=0.67  Score=45.03  Aligned_cols=107  Identities=11%  Similarity=-0.019  Sum_probs=67.8

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~  145 (359)
                      ....|++++.+..|+ +-..++.|.+.++........+...-....+|+++|.+.+|+.+..  .+.|...++.. ....
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~  163 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRF  163 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCE
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceE
Confidence            567899988555444 4456789999998754433333234445678999997555555443  46777777763 3222


Q ss_pred             ee----cCCceeEEEcCCC---cEEEEcCCcEEEEcCC
Q 040274          146 TL----TGHAKTLDFSQKG---LLAVGTGSFAQILGDF  176 (359)
Q Consensus       146 ~~----~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~  176 (359)
                      .+    -...+.+++++++   +++-+..+.|..+|+.
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            22    2346889999865   4444456789999853

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.07  E-value=1.2  Score=43.38  Aligned_cols=150  Identities=11%  Similarity=-0.039  Sum_probs=86.6

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec--CCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~~~  145 (359)
                      ....|++++.+..|+ +-...+.|.+.++........+...-....+++++|...+|+.+.  ..+.|...++.......
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence            466788887555444 444567899999875433222323345568999999555555544  35678888876433222


Q ss_pred             ee--cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          146 TL--TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       146 ~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      .+  -...+.+++++++   +++-...+.|..+|+.....  ..+....    .....+++.. +.++.+-...+.+..+
T Consensus       161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l----~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDL----PHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECC----SCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccC----CCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            22  2356899999975   44444567899998643322  2222221    1345677654 3333444446666665


Q ss_pred             EcCCC
Q 040274          221 VPRSS  225 (359)
Q Consensus       221 ~~gs~  225 (359)
                      ...++
T Consensus       234 dk~tg  238 (628)
T 4a0p_A          234 NKTSG  238 (628)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            54333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.03  E-value=0.77  Score=40.98  Aligned_cols=162  Identities=11%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             CCCEEEEecc-ceeEEEEcCC----CC---EEEEEe-C--CCeEEEEeC--CCCcceEEeec------CC-CCeEEEEE-
Q 040274           59 SGRYMAVAGR-RTDLMRVNPF----NG---VVSLGH-S--GGTVTMWKP--TTSALLIKMLY------HQ-GPVSALAF-  117 (359)
Q Consensus        59 dg~~l~~~~~-~v~~l~~sp~----~~---~l~tg~-~--dg~v~lwd~--~~~~~~~~~~~------h~-~~v~~l~~-  117 (359)
                      +|+.|..-.. .++.+..-|+    |.   ++++.. .  +++|.+|++  .++. +..+..      .. ..+..+|+ 
T Consensus        58 ~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly  136 (355)
T 3amr_A           58 DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLY  136 (355)
T ss_dssp             TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEE
T ss_pred             CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEE
Confidence            5555544321 4556655552    22   223333 3  578999966  4443 444411      11 45677777 


Q ss_pred             -ecC-CC-EEEEecCCCeEEEEEcC-------CCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCC----
Q 040274          118 -HPN-GH-LMATTGKECKIKIWDLR-------KYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGS----  179 (359)
Q Consensus       118 -~p~-g~-~l~s~~~d~~i~vwd~~-------~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~----  179 (359)
                       +|. +. ++++...+|.+..|++.       +.+.++++  .+.+..|...+..  ++.+-.+..|..|+.....    
T Consensus       137 ~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~  216 (355)
T 3amr_A          137 HSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNG  216 (355)
T ss_dssp             ECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCC
T ss_pred             ecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCc
Confidence             674 44 67888889999999883       34567777  4567788888754  6677777667777733221    


Q ss_pred             ccccccccccCCCCcceeEEEE--ccCCC-EEEEEe-CCCeEEEEEcC
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSF--RPYED-VLGIGH-SMGWSGILVPR  223 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~--sp~~~-~l~~g~-~dg~~~i~~~g  223 (359)
                      ..+..+... . ....+..|++  .++++ +|++++ .++...+|...
T Consensus       217 ~~v~~~~~g-~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          217 TVIDRADGR-H-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEBSSS-S-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEEecCC-c-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            122222111 0 1224777777  45555 666555 44555565543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.61  E-value=1  Score=43.80  Aligned_cols=146  Identities=9%  Similarity=-0.072  Sum_probs=88.1

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+..|+|++.+..|+.+ ..++.|..+++........+.........+++++.+.. +++-...+.|.+.++........
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l  117 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL  117 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence            56789999966665554 46789999998765433333333345678999876554 45555678899999875432111


Q ss_pred             e---cCCceeEEEcCC-C-cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeEE
Q 040274          147 L---TGHAKTLDFSQK-G-LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSG  218 (359)
Q Consensus       147 ~---~~~v~~~~~s~~-g-l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~~  218 (359)
                      +   -.....|+++|. | ++.+..  .+.|...++...  ....+...    ......+++++++..|+.+.. .+.+.
T Consensus       118 ~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~--~~~~l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          118 VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS--ERTTLVPN----VGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECS----CSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC--ceEEEECC----CCCcceEEEccccCEEEEEECCCCEEE
Confidence            1   234689999984 5 444443  467777775332  22222221    125788999987766665543 34444


Q ss_pred             EE
Q 040274          219 IL  220 (359)
Q Consensus       219 i~  220 (359)
                      .+
T Consensus       192 ~~  193 (628)
T 4a0p_A          192 SS  193 (628)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.18  E-value=2.5  Score=40.99  Aligned_cols=147  Identities=9%  Similarity=-0.038  Sum_probs=88.7

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+|+|++.+..|+.+. ..+.|..+++........+........++++++. ++++++-+..+.|.+.++.... ...
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~  428 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKI  428 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEE
Confidence            457788988655555554 5778999988764433333333356778999874 5455565667889999987542 233


Q ss_pred             e----cCCceeEEEcCC-C-cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC-CCeE
Q 040274          147 L----TGHAKTLDFSQK-G-LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS-MGWS  217 (359)
Q Consensus       147 ~----~~~v~~~~~s~~-g-l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~-dg~~  217 (359)
                      +    -....+|++.|. | ++.+..  .+.|...++. + .....+...   .-...+.+++++++..|+.+.. .+.+
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G-~~~~~l~~~---~l~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-G-SDRVVLVNT---SLGWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-S-CSCEEEECS---SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-C-CccEEEEeC---CCCCCeeeEEcccCCEEEEEECCCCEE
Confidence            3    134689999996 6 444443  2566666643 2 222222211   1125788999987777766644 3445


Q ss_pred             EEEE
Q 040274          218 GILV  221 (359)
Q Consensus       218 ~i~~  221 (359)
                      ..+.
T Consensus       504 ~~~~  507 (619)
T 3s94_A          504 EVMN  507 (619)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.17  E-value=1.7  Score=38.91  Aligned_cols=116  Identities=22%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCC---CCEEEEEeC----C----CeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPF---NGVVSLGHS----G----GTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~---~~~l~tg~~----d----g~v~lwd   95 (359)
                      +.|+|.|||+++++-..                         ....|+++|+   +..|+++..    +    ..|..|+
T Consensus        32 ~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~  111 (354)
T 3a9g_A           32 WSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR  111 (354)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             eEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence            78888888876554321                         3567899997   555555443    2    5677777


Q ss_pred             CCCC-------cceEE-eec-CCCCeEEEEEecCCCEEEEecC-------------CCeEEEEEcCCC---------eee
Q 040274           96 PTTS-------ALLIK-MLY-HQGPVSALAFHPNGHLMATTGK-------------ECKIKIWDLRKY---------EVL  144 (359)
Q Consensus        96 ~~~~-------~~~~~-~~~-h~~~v~~l~~~p~g~~l~s~~~-------------d~~i~vwd~~~~---------~~~  144 (359)
                      ....       +.+.. +.. .......+.|.|||.++++.+.             .|.|..+|....         ..+
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i  191 (354)
T 3a9g_A          112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI  191 (354)
T ss_dssp             ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred             ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence            6643       11111 221 1112367999999988777543             245666665421         112


Q ss_pred             Eee-cCCceeEEEcC-CC-cEEEEcC
Q 040274          145 QTL-TGHAKTLDFSQ-KG-LLAVGTG  167 (359)
Q Consensus       145 ~~~-~~~v~~~~~s~-~g-l~~~~~d  167 (359)
                      ... -.....++|+| +| ++++...
T Consensus       192 ~a~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          192 WSYGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             EEECCSCCCEEEECTTTCCEEEEECC
T ss_pred             EEEccCCcceEEEeCCCCCEEEEecC
Confidence            222 22357899999 67 6555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.13  E-value=2  Score=39.57  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=82.7

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEc
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGT  166 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~  166 (359)
                      ..|.|.|+..+..+..-..   .--+.-.||..+.+|.-. ..++.+||+.+.+.+..+  ...|..-.|-.+..++--.
T Consensus        48 ~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT  123 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT  123 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC
T ss_pred             CeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc
Confidence            3788888887654432211   112455688887776654 678999999998887777  5667777776666566666


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      +..|+-|++.....+...+..|..-.+..|.+...+++++|++..+
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G  169 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence            7899999976544455555444333456899999999999987443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.87  E-value=0.39  Score=42.10  Aligned_cols=127  Identities=6%  Similarity=-0.085  Sum_probs=69.9

Q ss_pred             EEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec----CCCeE
Q 040274           72 LMRVNPFNGVVSLGHSG--------------GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG----KECKI  133 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~d--------------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~----~d~~i  133 (359)
                      +--+++++.+|+.+..+              ..|+..++..+... .+.  ...  +..|++++..|+-+.    ....|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLD--PDP--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEE--CSC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eee--cCC--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34468888888877643              36777777766432 222  122  236788888888765    34556


Q ss_pred             EEEEcCCCeeeEeecCCceeEEEcCCC--cEEEEc-CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE
Q 040274          134 KIWDLRKYEVLQTLTGHAKTLDFSQKG--LLAVGT-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       134 ~vwd~~~~~~~~~~~~~v~~~~~s~~g--l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  210 (359)
                      +..++............+  ..|+++|  ++-.+. ...|.+.++... .. ..+...      ... ..++|++.+|+-
T Consensus       132 y~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~-~~-~~l~~~------~~~-~~~~P~g~~iy~  200 (302)
T 3s25_A          132 YRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQ-SE-ALFYDC------NCY-KPVVLDDTNVYY  200 (302)
T ss_dssp             EEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTT-EE-EEEECS------CEE-EEEEEETTEEEE
T ss_pred             EEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCC-CE-EEEeCC------Ccc-ceeeecCCEEEE
Confidence            667776433322223333  3456666  443443 467888775333 22 222211      122 235688888876


Q ss_pred             EeCC
Q 040274          211 GHSM  214 (359)
Q Consensus       211 g~~d  214 (359)
                      ...+
T Consensus       201 t~~~  204 (302)
T 3s25_A          201 MDVN  204 (302)
T ss_dssp             EEGG
T ss_pred             EEcC
Confidence            5543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.58  E-value=0.73  Score=40.30  Aligned_cols=127  Identities=6%  Similarity=-0.029  Sum_probs=73.1

Q ss_pred             eEEEEcCCCCEEEEEe--C--CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeE
Q 040274           71 DLMRVNPFNGVVSLGH--S--GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        71 ~~l~~sp~~~~l~tg~--~--dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~  145 (359)
                      .+..|++++..|+..+  .  +..|...+++... ...+..+..    ..|+|++..|+..+. ...|++.++..+....
T Consensus       107 ~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~  181 (302)
T 3s25_A          107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL  181 (302)
T ss_dssp             CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred             CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence            3457888888888776  2  3456666666433 344443332    456778888776654 6789999988765443


Q ss_pred             eecCCceeEEEcCCC--cEEEEcC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          146 TLTGHAKTLDFSQKG--LLAVGTG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       146 ~~~~~v~~~~~s~~g--l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      .+.+... ..++|++  ++-...+  ..|..-++...  ....+...      .+  ..|+|++++|..++.
T Consensus       182 l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~~------~~--~~~~~~g~~Iy~~~~  242 (302)
T 3s25_A          182 FYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTEA------NI--EHYNVYGSLIFYQRG  242 (302)
T ss_dssp             EECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSCS------CE--EEEEEETTEEEEEEC
T ss_pred             EeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeCC------Cc--ceEEECCCEEEEEEC
Confidence            3444433 3466877  4444433  35666664332  22222222      23  347888888876543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.36  E-value=1.4  Score=46.08  Aligned_cols=88  Identities=10%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             eEEEEeCCCCcceEEeec-CCCCeEEEEEec----CCCEEEEec----------CCCeEEEEEcCCCee--eEee--cCC
Q 040274           90 TVTMWKPTTSALLIKMLY-HQGPVSALAFHP----NGHLMATTG----------KECKIKIWDLRKYEV--LQTL--TGH  150 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p----~g~~l~s~~----------~d~~i~vwd~~~~~~--~~~~--~~~  150 (359)
                      .|++.|..+.+.+..+.- ....+.|++...    ...+|+.|+          ..|.|++|++..++.  ++..  ++.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            477888887776655542 233455554322    246777765          247899999875443  3322  678


Q ss_pred             ceeEEEcCCCcEEEEcCCcEEEEcCCCC
Q 040274          151 AKTLDFSQKGLLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       151 v~~~~~s~~gl~~~~~d~~i~v~d~~~~  178 (359)
                      +++++-- +|.+.++.+..|++|++...
T Consensus       888 v~al~~~-~g~Lla~ig~~l~vy~l~~~  914 (1158)
T 3ei3_A          888 VYSMVEF-NGKLLASINSTVRLYEWTTE  914 (1158)
T ss_dssp             EEEEEEE-TTEEEEEETTEEEEEEECTT
T ss_pred             CEEEeee-CCEEEEEcCCEEEEEECCCC
Confidence            8887744 35556666789999997543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.23  E-value=0.96  Score=40.44  Aligned_cols=116  Identities=11%  Similarity=0.041  Sum_probs=65.7

Q ss_pred             eEEEECCCCC-EEEEecc----------------------------ceeEEEEcCC---CCEEEEEeC--------CCeE
Q 040274           52 ILWILPSSGR-YMAVAGR----------------------------RTDLMRVNPF---NGVVSLGHS--------GGTV   91 (359)
Q Consensus        52 ~~l~~spdg~-~l~~~~~----------------------------~v~~l~~sp~---~~~l~tg~~--------dg~v   91 (359)
                      +.|+|.|||+ ++++-..                            ....|+++|+   +..|+.+..        ...|
T Consensus        21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v  100 (353)
T 2g8s_A           21 WALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV  100 (353)
T ss_dssp             EEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence            8899999999 6655322                            2367899996   555554432        2356


Q ss_pred             EEEeCCCCc----ceEE-eec------CCCCeEEEEEecCCCEEEEecC-------------CCeEEEEEcCCC------
Q 040274           92 TMWKPTTSA----LLIK-MLY------HQGPVSALAFHPNGHLMATTGK-------------ECKIKIWDLRKY------  141 (359)
Q Consensus        92 ~lwd~~~~~----~~~~-~~~------h~~~v~~l~~~p~g~~l~s~~~-------------d~~i~vwd~~~~------  141 (359)
                      ..|++....    .... +..      ....-..+.|.|||.++++.+.             .|.|.-+|....      
T Consensus       101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np  180 (353)
T 2g8s_A          101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP  180 (353)
T ss_dssp             EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred             EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence            666664321    1111 111      0112357999999977666543             246777776532      


Q ss_pred             --------eeeEee-cCCceeEEEcC-CC-cEEEEcC
Q 040274          142 --------EVLQTL-TGHAKTLDFSQ-KG-LLAVGTG  167 (359)
Q Consensus       142 --------~~~~~~-~~~v~~~~~s~-~g-l~~~~~d  167 (359)
                              ..+..+ -.....++|+| +| ++++..+
T Consensus       181 f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          181 FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             CcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence                    012222 12368899999 67 6555443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.15  E-value=4.9  Score=39.74  Aligned_cols=139  Identities=13%  Similarity=0.097  Sum_probs=77.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--  147 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--  147 (359)
                      |.++...+++..|..|.. +-|..+|+.++............|.++...++|.+.+.. . +-+.++|..+.....-.  
T Consensus       193 i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~~~~~~~~  269 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTPLQHIIHD  269 (758)
T ss_dssp             EEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSCCEEECCC
T ss_pred             eEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCcEEEEEcC
Confidence            566766666665545553 457888887764322111123458888888888776554 3 45888888765432211  


Q ss_pred             --------cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccc--c-ccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          148 --------TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYM--G-NSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       148 --------~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~--~-~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                              ...|.++....+| +..++..| +.++.. ..  ....+.  . ........|.++.-..+|.+.+ |+.+|
T Consensus       270 ~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G  344 (758)
T 3ott_A          270 SRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRY-NS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG  344 (758)
T ss_dssp             TTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECC-CC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE
T ss_pred             CCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccccc-CC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc
Confidence                    1237788888888 77777665 555542 11  111111  0 0000233588888777776544 34455


Q ss_pred             e
Q 040274          216 W  216 (359)
Q Consensus       216 ~  216 (359)
                      .
T Consensus       345 l  345 (758)
T 3ott_A          345 L  345 (758)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.13  E-value=1.3  Score=38.30  Aligned_cols=99  Identities=10%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC-------CeEEEEEcCCCee
Q 040274           78 FNGVVSLGHSGG-----TVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE-------CKIKIWDLRKYEV  143 (359)
Q Consensus        78 ~~~~l~tg~~dg-----~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-------~~i~vwd~~~~~~  143 (359)
                      ++.+++.|+.++     .+.+||+.+.+....  +...... .+++. -++.+++.|+.+       ..+.+||+.+..-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            455667776543     578889887643322  1111111 22222 256677777643       3588999987643


Q ss_pred             e--EeecCC--ceeEEEcCCC-cEEEEcC-----CcEEEEcCCCC
Q 040274          144 L--QTLTGH--AKTLDFSQKG-LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       144 ~--~~~~~~--v~~~~~s~~g-l~~~~~d-----~~i~v~d~~~~  178 (359)
                      .  ..++.+  -.+++...+. ++.++.+     +.+.+||+.+.
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            2  222211  1222222222 5555543     46889996554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.66  E-value=1.6  Score=38.90  Aligned_cols=106  Identities=14%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEee-------cCCceeEEEcCC----C-c-EEEE--cCCc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTL-------TGHAKTLDFSQK----G-L-LAVG--TGSF  169 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~-------~~~v~~~~~s~~----g-l-~~~~--~d~~  169 (359)
                      ..-..-++++|.|+|.++++--..|.|++++...+..  +..+       .+....|+++|+    + + ++.+  .++.
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3345568999999999888776689999998765543  2222       234688999995    5 3 3323  3455


Q ss_pred             EEEEcCCCCC----c--cccc-cccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          170 AQILGDFSGS----H--NYSR-YMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       170 i~v~d~~~~~----~--~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      |.-|.+....    .  .... +.............|.|.|||.++++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            6556533210    0  0111 1111000111356799999997666644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.14  E-value=1.6  Score=40.47  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=58.3

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEeec---------CCceeEEEcC----CC--cEEEEc-----
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTLT---------GHAKTLDFSQ----KG--LLAVGT-----  166 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~~---------~~v~~~~~s~----~g--l~~~~~-----  166 (359)
                      -...++++|.|+|+++++-...+.|++++..++..  +..+.         +.+..|+|+|    ++  +++.+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999999887765555798888655543  33332         1245899999    45  333332     


Q ss_pred             -------CCcEEEEcCCCCC-c--cccccc-cccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          167 -------GSFAQILGDFSGS-H--NYSRYM-GNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       167 -------d~~i~v~d~~~~~-~--~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                             ...|.-|++.... .  ....+. ............|.|.|||.++++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   1345555532211 0  011111 000001124788999999987665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.72  E-value=2.4  Score=36.36  Aligned_cols=99  Identities=8%  Similarity=0.068  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcceEEeecCCCCe-EEEEEecCCCEEEEecCC-----CeEEEEEcCCCeeeE-
Q 040274           78 FNGVVSLGHSG-----GTVTMWKPTTSALLIKMLYHQGPV-SALAFHPNGHLMATTGKE-----CKIKIWDLRKYEVLQ-  145 (359)
Q Consensus        78 ~~~~l~tg~~d-----g~v~lwd~~~~~~~~~~~~h~~~v-~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~~~~~-  145 (359)
                      ++.+++.|+.+     ..+.+||+.+.+....-....... .+++. -++.+++.|+.+     ..+.+||+.+..-.. 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            34455666543     368889988765332211111111 12222 267777777765     458899988764322 


Q ss_pred             -eecCC--ceeEEEcCCC--cEEEEcC-----CcEEEEcCCCC
Q 040274          146 -TLTGH--AKTLDFSQKG--LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       146 -~~~~~--v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~  178 (359)
                       .++.+  -.++... ++  ++.++.+     +.+.+||+.+.
T Consensus       191 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          191 TPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             CCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence             22211  1222222 34  5555543     46889997554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.25  E-value=2.5  Score=41.56  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             EEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEe-----ecCCCCeEEEEEecC-CCEEEEecC--C-----CeEEEE
Q 040274           72 LMRVNPFNGVVSLGHSGG--TVTMWKPTTSALLIKM-----LYHQGPVSALAFHPN-GHLMATTGK--E-----CKIKIW  136 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg--~v~lwd~~~~~~~~~~-----~~h~~~v~~l~~~p~-g~~l~s~~~--d-----~~i~vw  136 (359)
                      +++...++.+++.|+.++  .+.+||+.+......-     ........++.++.+ +.+++.||.  +     ..+.+|
T Consensus       494 ~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~y  573 (695)
T 2zwa_A          494 SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIF  573 (695)
T ss_dssp             EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEE
T ss_pred             eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEE
Confidence            333334777888887654  7899998876532211     111122233555655 667777775  2     458999


Q ss_pred             EcCCCe
Q 040274          137 DLRKYE  142 (359)
Q Consensus       137 d~~~~~  142 (359)
                      |+.+..
T Consensus       574 d~~~~~  579 (695)
T 2zwa_A          574 KYDAEN  579 (695)
T ss_dssp             EECTTC
T ss_pred             EccCCc
Confidence            998766

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.21  E-value=0.22  Score=44.46  Aligned_cols=99  Identities=6%  Similarity=0.028  Sum_probs=63.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecC-CCCeEEEEEe--c-CCCEEEEe-cCCCeEEEEEcCCCeeeEee--cCCc-
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYH-QGPVSALAFH--P-NGHLMATT-GKECKIKIWDLRKYEVLQTL--TGHA-  151 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~--p-~g~~l~s~-~~d~~i~vwd~~~~~~~~~~--~~~v-  151 (359)
                      .+++.++.||.|.-+|..+|+.+..+... ..++....-.  + ++..++.. +.||.|+.+|..+|.....+  +.-+ 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999999888654 1222221110  1 22333333 68999999999888654444  1111 


Q ss_pred             -eeEEE------------cCCC-cEEEEcCCcEEEEcCCCC
Q 040274          152 -KTLDF------------SQKG-LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       152 -~~~~~------------s~~g-l~~~~~d~~i~v~d~~~~  178 (359)
                       .-+..            +.+| +++++.++.+...|+.++
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTC
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC
Confidence             11221            1455 788888888888886655

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.99  E-value=8.7  Score=39.26  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=32.7

Q ss_pred             CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee
Q 040274          111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL  147 (359)
Q Consensus       111 ~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~  147 (359)
                      .+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677777888889999999999999999999988776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.94  E-value=0.64  Score=44.07  Aligned_cols=67  Identities=9%  Similarity=-0.019  Sum_probs=46.8

Q ss_pred             CCeEEEEEecCCCEEEEec-CCCeEEEEEcCCCee-------------eEee--cCCceeEEEcCCC--cEEEEcCCcEE
Q 040274          110 GPVSALAFHPNGHLMATTG-KECKIKIWDLRKYEV-------------LQTL--TGHAKTLDFSQKG--LLAVGTGSFAQ  171 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~~~-------------~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~  171 (359)
                      ...+.+.++|||++++.++ .+.++.++|+.....             ....  .-.....+|.++|  +.+.--|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            3457789999999977765 589999999874211             1111  1224778999999  33333689999


Q ss_pred             EEcCC
Q 040274          172 ILGDF  176 (359)
Q Consensus       172 v~d~~  176 (359)
                      -|++.
T Consensus       403 kWni~  407 (638)
T 3sbq_A          403 KWNME  407 (638)
T ss_dssp             EEEHH
T ss_pred             EEecc
Confidence            99964

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.72  E-value=2.4  Score=36.39  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCc---ceEE--eecCCCCeEEEEEecCCCEEEEecCC-----CeEEEEEcCCCe
Q 040274           78 FNGVVSLGHSG-----GTVTMWKPTTSA---LLIK--MLYHQGPVSALAFHPNGHLMATTGKE-----CKIKIWDLRKYE  142 (359)
Q Consensus        78 ~~~~l~tg~~d-----g~v~lwd~~~~~---~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~~  142 (359)
                      ++.+++.|+.+     ..+.+||+.+..   ....  +........++.  .++.+++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45566777654     368999988765   3222  111111112222  266777777654     368899988765


Q ss_pred             e--eEeecCC--ceeEEEcCCC--cEEEEcC-----CcEEEEcCCCC
Q 040274          143 V--LQTLTGH--AKTLDFSQKG--LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       143 ~--~~~~~~~--v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~  178 (359)
                      -  +..++.+  -.+++.. ++  ++.++.+     ..+.+||+.+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            3  2222211  1222222 45  5555543     46888986554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.56  E-value=11  Score=37.07  Aligned_cols=139  Identities=8%  Similarity=-0.002  Sum_probs=74.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT--  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~--  146 (359)
                      .|.++....++ .|..|+.+| +..||..+.............|.++.. .+|. |..++.+ -|..||..++....-  
T Consensus        64 ~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           64 RIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             CEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECH
T ss_pred             eEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEecc
Confidence            46677666655 555666554 789998876432211112235777654 4554 4444554 588899876554322  


Q ss_pred             ----e-cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccc--cccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          147 ----L-TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYM--GNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       147 ----~-~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                          + ...|.++....+| +..++. +.|..|+.... . ...+.  .........|.++...+++..|-+|+..|
T Consensus       139 ~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G  212 (758)
T 3ott_A          139 RRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNG-K-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY  212 (758)
T ss_dssp             HHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTT-E-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCC-c-eEEecCCCccccccceeEEEEEECCCCEEEEEECCC
Confidence                1 1346778888788 666654 45777874332 1 11111  11000122477887777766444444333

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.90  E-value=2.5  Score=36.38  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC------CeEEEEEcCCCeeeE
Q 040274           78 FNGVVSLGHSG----GTVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE------CKIKIWDLRKYEVLQ  145 (359)
Q Consensus        78 ~~~~l~tg~~d----g~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~~~~~  145 (359)
                      ++.+++.|+.+    ..+.+||+.+.+....  +........++.  -++.+++.|+.+      ..+.+||+.+..-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45566777654    5788999887653322  211111112222  266777777765      458999998765322


Q ss_pred             --eecCC--ceeEEEcCCC--cEEEEc---------CCcEEEEcCCCC
Q 040274          146 --TLTGH--AKTLDFSQKG--LLAVGT---------GSFAQILGDFSG  178 (359)
Q Consensus       146 --~~~~~--v~~~~~s~~g--l~~~~~---------d~~i~v~d~~~~  178 (359)
                        .++.+  -.+++.. ++  ++.++.         -..+.+||+.+.
T Consensus       133 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence              22211  1122222 44  444443         345888986554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.52  E-value=5.7  Score=34.08  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCcceEEeecCCCC-eEEEEEecCCCEEEEecC---------CCeEEEEEcCCC
Q 040274           78 FNGVVSLGHSG------GTVTMWKPTTSALLIKMLYHQGP-VSALAFHPNGHLMATTGK---------ECKIKIWDLRKY  141 (359)
Q Consensus        78 ~~~~l~tg~~d------g~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~p~g~~l~s~~~---------d~~i~vwd~~~~  141 (359)
                      ++.+++.|+.+      ..+.+||+.+......-...... -.+++. -++.+++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            45566777654      45889998876533221111111 112222 36667777664         345889999876


Q ss_pred             ee--eEeecCC--ceeEEEcCCC--cEEEEcC-----CcEEEEcCCCC
Q 040274          142 EV--LQTLTGH--AKTLDFSQKG--LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       142 ~~--~~~~~~~--v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~  178 (359)
                      .-  +..++.+  -.++... ++  ++.++.+     ..+.+||+.+.
T Consensus       180 ~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            43  2222211  1222333 44  4555432     46889996554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.77  E-value=2.3  Score=36.73  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=50.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC-----CeEEEEEcCCCeee-
Q 040274           78 FNGVVSLGHSG-----GTVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE-----CKIKIWDLRKYEVL-  144 (359)
Q Consensus        78 ~~~~l~tg~~d-----g~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~~~~-  144 (359)
                      ++.+++.|+.+     ..+.+||+.+.+....  +........++.+  ++.+++.|+.+     ..+.+||+.+.+-. 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            45556666533     3588888877643221  1111111122222  66777777764     45889998876432 


Q ss_pred             -EeecCC--ceeEEEcCCC--cEEEEcC-----CcEEEEcCCCC
Q 040274          145 -QTLTGH--AKTLDFSQKG--LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       145 -~~~~~~--v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~  178 (359)
                       ..++.+  -.+++.. ++  ++.++.+     ..+.+||+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence             222111  1222223 44  5555543     56889996554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.68  E-value=4.4  Score=35.04  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             CCCEEEEEeCC--------CeEEEEeCCCCcceE--EeecCCCCeEEEEEecCCCEEEEecC-C-----CeEEEEEcCCC
Q 040274           78 FNGVVSLGHSG--------GTVTMWKPTTSALLI--KMLYHQGPVSALAFHPNGHLMATTGK-E-----CKIKIWDLRKY  141 (359)
Q Consensus        78 ~~~~l~tg~~d--------g~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~p~g~~l~s~~~-d-----~~i~vwd~~~~  141 (359)
                      ++.+++.|+.+        ..+.+||+.+.+...  .+...... .+++ .-++.+++.||. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            34455666532        358889988764322  11111111 1222 245667777776 2     46899999876


Q ss_pred             ee--eEeecCC--ceeEEEcCCC--cEEEEcCC-----cEEEEcCCCC
Q 040274          142 EV--LQTLTGH--AKTLDFSQKG--LLAVGTGS-----FAQILGDFSG  178 (359)
Q Consensus       142 ~~--~~~~~~~--v~~~~~s~~g--l~~~~~d~-----~i~v~d~~~~  178 (359)
                      +-  +..++.+  -.+++.. ++  ++.++.++     .+.+||+.+.
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCC
Confidence            43  2222211  1222222 44  66666543     5888986554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.20  E-value=6.2  Score=33.76  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCCC-----eEEEEEcCCCeeeE
Q 040274           78 FNGVVSLGHSG-----GTVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKEC-----KIKIWDLRKYEVLQ  145 (359)
Q Consensus        78 ~~~~l~tg~~d-----g~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d~-----~i~vwd~~~~~~~~  145 (359)
                      ++.+++.|+.+     ..+.+||+.+.+....  +...... .+++. -++.+++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            45566666644     3588899887643222  1111111 12222 2567777777553     57888988765322


Q ss_pred             --eecCC--ceeEEEcCCC--cEEEEc-------CCcEEEEcCCCC
Q 040274          146 --TLTGH--AKTLDFSQKG--LLAVGT-------GSFAQILGDFSG  178 (359)
Q Consensus       146 --~~~~~--v~~~~~s~~g--l~~~~~-------d~~i~v~d~~~~  178 (359)
                        .++.+  -.+++.. ++  ++.++.       -..+.+||+.+.
T Consensus       139 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             cCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence              22211  1222222 44  455543       245888986544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.12  E-value=3.7  Score=43.56  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=79.4

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEc
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGT  166 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~  166 (359)
                      .+|.|.|+..+..+..-   .-.--+.-.||..+.+|.-. ..++.|||+.+.+.+.++  +.+|.--.|-....++--+
T Consensus        48 ~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT  123 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT  123 (1630)
T ss_pred             ceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc
Confidence            37888888765443211   11112344678777766654 678999999987776666  5667777776666555556


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      +..|+-|++.....+...+..|..-.+..|.+-..+++++|++..+
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g  169 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence            7789999975544455555444332456788889999999987544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.83  E-value=10  Score=37.17  Aligned_cols=102  Identities=15%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CCCCEEEEEeCC----CeEEEEeCCCCcceEEe-e------cCCCCeEEEEEec-CCCEEEEecCC------CeEEEEEc
Q 040274           77 PFNGVVSLGHSG----GTVTMWKPTTSALLIKM-L------YHQGPVSALAFHP-NGHLMATTGKE------CKIKIWDL  138 (359)
Q Consensus        77 p~~~~l~tg~~d----g~v~lwd~~~~~~~~~~-~------~h~~~v~~l~~~p-~g~~l~s~~~d------~~i~vwd~  138 (359)
                      .++.+++.|+.+    ..+.+||+.++.....- .      .....-.+++..+ ++.+++.||.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46889998876543222 1      1111123344444 77778887754      35889999


Q ss_pred             CCCee--eEeecCC--ceeEEEcCCC--cEEEEcCC--cEEEEcCCCC
Q 040274          139 RKYEV--LQTLTGH--AKTLDFSQKG--LLAVGTGS--FAQILGDFSG  178 (359)
Q Consensus       139 ~~~~~--~~~~~~~--v~~~~~s~~g--l~~~~~d~--~i~v~d~~~~  178 (359)
                      .+..-  +..++.+  -.+++...++  ++.||.++  .+.+||+.+.
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence            87543  2222211  1233332355  55666543  7899997654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.41  E-value=10  Score=35.15  Aligned_cols=103  Identities=18%  Similarity=0.274  Sum_probs=58.7

Q ss_pred             EEEeccceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---cceEEee---c------CCCCeEEEEEecC----CCEEE
Q 040274           63 MAVAGRRTDLMRVNPFNG-VVSLGHSGGTVTMWKPTTS---ALLIKML---Y------HQGPVSALAFHPN----GHLMA  125 (359)
Q Consensus        63 l~~~~~~v~~l~~sp~~~-~l~tg~~dg~v~lwd~~~~---~~~~~~~---~------h~~~v~~l~~~p~----g~~l~  125 (359)
                      +|.+-...+.|+|.|++. .|+++...|.|++++....   ..+..+.   .      ..+....|+|+|+    +.+.+
T Consensus         9 va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv   88 (463)
T 2wg3_C            9 VVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV   88 (463)
T ss_dssp             EEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred             eccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence            444444678899999985 4455567899999975432   1222221   1      1356789999996    44433


Q ss_pred             EecC--C----------CeEEEEEcCC----------CeeeEeec----CC-ceeEEEcCCC--cEEEE
Q 040274          126 TTGK--E----------CKIKIWDLRK----------YEVLQTLT----GH-AKTLDFSQKG--LLAVG  165 (359)
Q Consensus       126 s~~~--d----------~~i~vwd~~~----------~~~~~~~~----~~-v~~~~~s~~g--l~~~~  165 (359)
                      +-+.  +          ..|.-|.+..          .+.+..+.    .| ...|.|.|||  +++.+
T Consensus        89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence            3221  1          1455565532          12333332    22 4789999999  44444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.40  E-value=4.6  Score=34.95  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCcceEEeecCCCCe-EEEEEecCCCEEEEecCC------CeEEEEEcCCCee
Q 040274           78 FNGVVSLGHSG-------GTVTMWKPTTSALLIKMLYHQGPV-SALAFHPNGHLMATTGKE------CKIKIWDLRKYEV  143 (359)
Q Consensus        78 ~~~~l~tg~~d-------g~v~lwd~~~~~~~~~~~~h~~~v-~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~~~  143 (359)
                      ++.+++.|+.+       ..+.+||+.+.+....-....... .+++. .++.+++.|+.+      ..+.+||+.+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            34566666643       257888888764332111111101 12222 466677777642      3589999987653


Q ss_pred             e--EeecCC--ceeEEEcCCC-cEEEEcC-----CcEEEEcCCCC
Q 040274          144 L--QTLTGH--AKTLDFSQKG-LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       144 ~--~~~~~~--v~~~~~s~~g-l~~~~~d-----~~i~v~d~~~~  178 (359)
                      .  ..++.+  ..+++...+. ++.++.+     ..+.+||+.+.
T Consensus       188 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            2  222211  1222333222 5566543     35778886554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.95  E-value=7.1  Score=33.58  Aligned_cols=98  Identities=11%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             CCCEEEEEeC----C-----CeEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC-----CeEEEEEcCCC
Q 040274           78 FNGVVSLGHS----G-----GTVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE-----CKIKIWDLRKY  141 (359)
Q Consensus        78 ~~~~l~tg~~----d-----g~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-----~~i~vwd~~~~  141 (359)
                      ++.+++.|+.    +     ..+.+||+.+.+....  +........++.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4556666654    2     3588899887643221  1111111122222  66777777643     35889998876


Q ss_pred             eeeE--eecCC--ceeEEEcCCC--cEEEEcC-----CcEEEEcCCCC
Q 040274          142 EVLQ--TLTGH--AKTLDFSQKG--LLAVGTG-----SFAQILGDFSG  178 (359)
Q Consensus       142 ~~~~--~~~~~--v~~~~~s~~g--l~~~~~d-----~~i~v~d~~~~  178 (359)
                      +-..  .++.+  -.+++.. ++  ++.++.+     +.+.+||+.+.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             eEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence            4322  22211  1122222 44  5555543     46888986544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=86.92  E-value=14  Score=31.75  Aligned_cols=100  Identities=12%  Similarity=-0.015  Sum_probs=50.8

Q ss_pred             CCCCEEEEEeC----C-------CeEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC--------CeEEE
Q 040274           77 PFNGVVSLGHS----G-------GTVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE--------CKIKI  135 (359)
Q Consensus        77 p~~~~l~tg~~----d-------g~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d--------~~i~v  135 (359)
                      .++.+++.|+.    +       ..+.+||+.+.+....  +...... .+++. -++.+++.||.+        ..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEE
Confidence            46677777763    1       1277888887653221  1111111 12222 256677777742        45899


Q ss_pred             EEcCCCee--eEeecCCc--eeEEEcCCC-cEEEEc-C-----CcEEEEcCCCC
Q 040274          136 WDLRKYEV--LQTLTGHA--KTLDFSQKG-LLAVGT-G-----SFAQILGDFSG  178 (359)
Q Consensus       136 wd~~~~~~--~~~~~~~v--~~~~~s~~g-l~~~~~-d-----~~i~v~d~~~~  178 (359)
                      ||+.+.+-  +..++.+.  .+++...+. ++.++. +     +.+.+||+.+.
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            99987643  22222211  222332222 555555 2     47889986554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=86.82  E-value=14  Score=31.58  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             eEEEECCCCCEEEEecc-------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFH  118 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~  118 (359)
                      +++.+. ||+....|..             .|..++...+..++  -. ||.|+.|=......+..-......|..++..
T Consensus        74 hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G  149 (282)
T 3qhy_B           74 HSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG  149 (282)
T ss_dssp             EEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred             EEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence            555554 6665555543             34444443332222  23 6777777544321111111112345555543


Q ss_pred             cCCCEEEEecCCCeEEEEEcCCC-eeeE--eecCCceeEEEcCCCcEEEEcCCcEEEEcC
Q 040274          119 PNGHLMATTGKECKIKIWDLRKY-EVLQ--TLTGHAKTLDFSQKGLLAVGTGSFAQILGD  175 (359)
Q Consensus       119 p~g~~l~s~~~d~~i~vwd~~~~-~~~~--~~~~~v~~~~~s~~gl~~~~~d~~i~v~d~  175 (359)
                      .+..++  -. ||.|+.|-.... +.-.  .....|..++......++. .+|.|+.|-.
T Consensus       150 ~~~~~~--l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~  205 (282)
T 3qhy_B          150 VYTALA--VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGD  205 (282)
T ss_dssp             SSEEEE--EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEEC
T ss_pred             cCEEEE--EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEEC
Confidence            332222  22 677777765432 1110  1123455565554443333 5788888863

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=85.42  E-value=7.2  Score=34.27  Aligned_cols=49  Identities=12%  Similarity=0.077  Sum_probs=26.0

Q ss_pred             CeEEEEeCCCCcceEEeecC-CCCe-EEEEEecCCCEEEEecC------CCeEEEEEc
Q 040274           89 GTVTMWKPTTSALLIKMLYH-QGPV-SALAFHPNGHLMATTGK------ECKIKIWDL  138 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h-~~~v-~~l~~~p~g~~l~s~~~------d~~i~vwd~  138 (359)
                      ..+.+||+.+.+....-... .... .+++.. ++.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            47889998876433221111 1111 233332 5666777664      235777887

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=85.33  E-value=39  Score=35.34  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEe-ecCCCCeEEEEEecC------CCEEEEecC-CCeEEEEEcCCCeeeEee--cC-
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKM-LYHQGPVSALAFHPN------GHLMATTGK-ECKIKIWDLRKYEVLQTL--TG-  149 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~p~------g~~l~s~~~-d~~i~vwd~~~~~~~~~~--~~-  149 (359)
                      +++.++ ++.+.++.+..++..... ..-...|.|+++.|.      +.+++.|.. |++|+|+++.+.+.+...  .+ 
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~  603 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE  603 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence            444444 567777776654321111 123567999999763      368888886 999999999987765543  22 


Q ss_pred             -CceeEEEcC-CC---cEEEEcCCcEEEEc
Q 040274          150 -HAKTLDFSQ-KG---LLAVGTGSFAQILG  174 (359)
Q Consensus       150 -~v~~~~~s~-~g---l~~~~~d~~i~v~d  174 (359)
                       .+.++.+.. .+   ++.+-.||.+..+.
T Consensus       604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          604 IIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence             234443332 23   55555677665443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=84.84  E-value=8.2  Score=35.57  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=46.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      ..+|..|+....++.-..-|.|++||+.|+.++..-.-...+|...+.+.+..-++.....|.|.--.
T Consensus       261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~  328 (494)
T 1bpo_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC  328 (494)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred             eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence            45777888777888889999999999999998877655555555555544444444444444444333

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.21  E-value=15  Score=32.21  Aligned_cols=53  Identities=21%  Similarity=0.264  Sum_probs=26.9

Q ss_pred             CCCEEEEEeC-C---------CeEEEEeCCCCcceEEeecC-CCCeEEEEEecCCCEEEEecCC
Q 040274           78 FNGVVSLGHS-G---------GTVTMWKPTTSALLIKMLYH-QGPVSALAFHPNGHLMATTGKE  130 (359)
Q Consensus        78 ~~~~l~tg~~-d---------g~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~p~g~~l~s~~~d  130 (359)
                      ++.+++.|+. +         ..+.+||+.+.+....-... .......++..++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            3455566654 2         36889998876432211111 1111111222567778888754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.52  E-value=16  Score=31.43  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=50.6

Q ss_pred             cCCCCEEEEEeC----CC-------eEEEEeCCCCcceEE--eecCCCCeEEEEEecCCCEEEEecCC-------CeEEE
Q 040274           76 NPFNGVVSLGHS----GG-------TVTMWKPTTSALLIK--MLYHQGPVSALAFHPNGHLMATTGKE-------CKIKI  135 (359)
Q Consensus        76 sp~~~~l~tg~~----dg-------~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~p~g~~l~s~~~d-------~~i~v  135 (359)
                      ..++.+++.|+.    ++       .+.+||+.+.+....  +...... .+++.. ++.+++.||.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            345667777763    11       277888877643221  1111111 222222 56677777754       35888


Q ss_pred             EEcCCCeeeE--eecCCc--eeEEEcCCC--cEEEEc------CCcEEEEcCCCC
Q 040274          136 WDLRKYEVLQ--TLTGHA--KTLDFSQKG--LLAVGT------GSFAQILGDFSG  178 (359)
Q Consensus       136 wd~~~~~~~~--~~~~~v--~~~~~s~~g--l~~~~~------d~~i~v~d~~~~  178 (359)
                      ||+.+.+-..  .++.+.  .+++. .++  ++.++.      -+.+.+||+.+.
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            9988765322  222211  12222 344  455543      246889997554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.70  E-value=3.6  Score=39.08  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             eEEEECCCCCEEEEecc------------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR------------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd   95 (359)
                      ..+.++|||+|++.++.                                    ...-.+|.++|....|-.-|..|..|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            88999999999999887                                    557788999885555555799999999


Q ss_pred             CCCC----------cceEEeecCCCCeEEE-----EEecCCCEEEEecC
Q 040274           96 PTTS----------ALLIKMLYHQGPVSAL-----AFHPNGHLMATTGK  129 (359)
Q Consensus        96 ~~~~----------~~~~~~~~h~~~v~~l-----~~~p~g~~l~s~~~  129 (359)
                      +...          ..+..+.-|-.+-+-.     +-.|+|++|++.+.
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            8642          2344444444332221     12568999998753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=80.66  E-value=26  Score=29.86  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             eEEEECCCCCEEEEecc-------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR-------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFH  118 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~  118 (359)
                      +.+.+. ||+....|..             .|..++...+..++ . . ||.|+.|=.+..-.+..-..-...|..++..
T Consensus        35 h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~-l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G  110 (282)
T 3qhy_B           35 HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA-L-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAG  110 (282)
T ss_dssp             EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEE-E-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEE
T ss_pred             eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEE-E-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECc
Confidence            677777 8887777654             56666665444333 3 4 8999999755322111100113467777766


Q ss_pred             cCCCEEEEecCCCeEEEEEcCC-CeeeEe--ecCCceeEEEcCCCcEEEEcCCcEEEEcCC
Q 040274          119 PNGHLMATTGKECKIKIWDLRK-YEVLQT--LTGHAKTLDFSQKGLLAVGTGSFAQILGDF  176 (359)
Q Consensus       119 p~g~~l~s~~~d~~i~vwd~~~-~~~~~~--~~~~v~~~~~s~~gl~~~~~d~~i~v~d~~  176 (359)
                      .+..  +.-. ||.|+.|-... +++-..  ....|..++......++.. ++.|+.|-..
T Consensus       111 ~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n  167 (282)
T 3qhy_B          111 AWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDN  167 (282)
T ss_dssp             TTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECC
T ss_pred             CCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCC
Confidence            5433  3334 89999997654 222111  1234556655444433444 7888888643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.48  E-value=26  Score=32.40  Aligned_cols=104  Identities=13%  Similarity=-0.007  Sum_probs=56.2

Q ss_pred             CCeEEEEEecCCC-EEEEecCCCeEEEEEcCCC---eeeEee------------cCCceeEEEcCC----C--cEEEEcC
Q 040274          110 GPVSALAFHPNGH-LMATTGKECKIKIWDLRKY---EVLQTL------------TGHAKTLDFSQK----G--LLAVGTG  167 (359)
Q Consensus       110 ~~v~~l~~~p~g~-~l~s~~~d~~i~vwd~~~~---~~~~~~------------~~~v~~~~~s~~----g--l~~~~~d  167 (359)
                      ..-++|+|.|+|. .|+.+...|.|++++....   ..+..+            .+....|+|+|+    +  +++.+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999986 3444567899999975422   122222            123577999997    4  4444321


Q ss_pred             ------------CcEEEEcCCCC--C-------ccccccccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          168 ------------SFAQILGDFSG--S-------HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       168 ------------~~i~v~d~~~~--~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                                  ..|.-|.+...  .       ..+.......  .......|.|.|||.+.++.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~--~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH--RKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS--SSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC--CcccCCcEeECCCCcEEEEeCCCC
Confidence                        13444543321  0       1111111111  112467899999997666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 4e-14
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
           G    T+ MW  +T   L+ ++ H   V  + FH  G  + +   +  +++WD +    +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

Query: 145 QTLTGHAKT---LDFSQKG-LLAVG 165
           +TL  H      LDF +    +  G
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 94  WKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
           W P        +  H+ PV+ + FHP   +M +  ++  IK+WD    +  +TL GH
Sbjct: 3   WIPRPP-EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 10/65 (15%), Positives = 25/65 (38%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           +  +     +       T+ +W       +  +  H+  V++L FH     + T   +  
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312

Query: 133 IKIWD 137
           +K+W+
Sbjct: 313 VKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 31/78 (39%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           + + P    +       T+ MW+  T   +     H+  V  +  + +G L+A+   +  
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 133 IKIWDLRKYEVLQTLTGH 150
           +++W +   E    L  H
Sbjct: 167 VRVWVVATKECKAELREH 184

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 23/123 (18%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFH-------------- 118
           +R N    +++   +  TV +W   T     ++  H+  V  +++               
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 119 ------PNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQKGLLAVGTGSF 169
                   G  + +  ++  IK+WD+     L TL GH      + F   G   +     
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 170 AQI 172
             +
Sbjct: 269 KTL 271

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 9e-13
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 54  WILPSSGRYMAVAGRRTDLMRVNPFNGVVSL-GHSGGTVTMWKPTT----SALLIKMLYH 108
           +++P + R          L+ ++  +   +L   +     ++ P         L K L H
Sbjct: 2   YLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDH 61

Query: 109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
              V  + F  +G  +A TG     +++ +    ++  L+  +      +    +    S
Sbjct: 62  TSVVCCVKFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 169 FAQILG-DFSGSHNY 182
              I    FS    +
Sbjct: 121 DLYIRSVCFSPDGKF 135

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 6e-10
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALA------FHPNGHLMAT 126
           +     +  +  G     V  W   +   L+ +  H+  V ++A        P  ++ AT
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 127 TGKECKIKIWDLRK 140
              +CK +IW  +K
Sbjct: 374 GSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (128), Expect = 9e-09
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 58  SSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAF 117
             G+ +        +   N  N                P +    +  + H+  V ++A 
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNA-------NNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 118 HPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
             N   + +  K+  +  WD +    L  L GH
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY-------HQGPVSALAFHPNGHLMA 125
                    ++ G     V +W   T  L+ ++         H+  V ++ F  +G  + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 126 TTGKECKIKIWDLRKYEVLQ 145
           +   +  +K+W+L+      
Sbjct: 271 SGSLDRSVKLWNLQNANNKS 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 24  LKGQLPLREELYGKSAKAAAKVE--KNLVHILWI----LPSSGRYMAVAGRRT-DLMRVN 76
           LK Q      LY  +      VE  K+L H   +      + G Y+A    +T  + RV+
Sbjct: 32  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS 91

Query: 77  PFNGVVSL-GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
             + V  L   S          TS+           + ++ F P+G  +AT  ++  I+I
Sbjct: 92  DGSLVARLSDDSAANKDPENLNTSSSPS----SDLYIRSVCFSPDGKFLATGAEDRLIRI 147

Query: 136 W 136
           W
Sbjct: 148 W 148

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           +  +    ++  G+      +W    +     +  H   VS L    +G  +AT   +  
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

Query: 133 IKIWD 137
           +KIW+
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 73  MRVNPFNGVVSLGHSGGTV--TMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE 130
           +   P     + G    T      +     +          +++++F  +G L+     +
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 131 CKIKIWDLRKYEVLQTLTGHAKT---LDFSQKGLLAVGTGS 168
               +WD  K +    L GH      L  +  G+    TGS
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGS 331

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 4/129 (3%)

Query: 90  TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
           T  +W   T         H G V +L+  P+  L  +   +   K+WD+R+    QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 150 HAK---TLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED 206
           H      + F   G     TGS       F    +      +       I  VSF     
Sbjct: 225 HESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 207 VLGIGHSMG 215
           +L  G+   
Sbjct: 284 LLLAGYDDF 292

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
           H   + A+ +  +  L+ +  ++ K+ IWD      +  +   
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (144), Expect = 1e-10
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 9/134 (6%)

Query: 107 YHQ---GPVSALAFHPNGHLMATTGKECKIKIWDLR--KYEVLQTLTGHAKT---LDFSQ 158
           YH     P+S  A++ +   +A      ++ I++    K+  +  L  H      +D++ 
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 159 KGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG 218
                V T    +    ++      +     +        V + P E    +G       
Sbjct: 62  DSNRIV-TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120

Query: 219 ILVPRSSEPNFDSW 232
           I         +   
Sbjct: 121 ICYFEQENDWWVCK 134

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 76  NPFNGVVSLGHSGGTVTMWKPTTSAL-LIKMLY-HQGPVSALAFHPNGHLMATTGKECKI 133
           N     +++  +   V +++ + +    +  L  H G V+ + + P+ + + T G +   
Sbjct: 16  NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75

Query: 134 KIWD 137
            +W 
Sbjct: 76  YVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 52  ILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY--HQ 109
           +L+   S+   ++  GR  D+ + +   G+ +               SA     L   H+
Sbjct: 267 VLFTYDSAAGKLSFGGR-LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK 325

Query: 110 GPVSALAFHPNG----HLMATTGKECKIKIWDLRKYE-VLQTL 147
             VS ++    G        TTG +  + IWD+R  E  L+ L
Sbjct: 326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 4/121 (3%)

Query: 86  HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ 145
               TV +        +  +     P+ A+ F     L+A  G +C   ++         
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKL 278

Query: 146 TLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE 205
           +  G    LD  ++      T        D   S   S   G  +   ++          
Sbjct: 279 SFGGR---LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 335

Query: 206 D 206
            
Sbjct: 336 G 336

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.2 bits (141), Expect = 1e-10
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 102 LIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
           + ++ Y H   ++AL+   +G  + +   E  I  WD+      +     
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMW---KPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK 129
           +  +P N  ++ G    +V +W   KP+   ++IK  +    V+++ +     +  + G+
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI-VSAGQ 288

Query: 130 ECKIKIWDL 138
           +  IK W++
Sbjct: 289 DSNIKFWNV 297

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           ++                +  W+    A  I        V +     +   + T   + K
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 133 IKIWDL 138
             ++++
Sbjct: 330 ATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 10/112 (8%)

Query: 64  AVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHL 123
           A+  +      V     +  +      +        A  I  L H   V A+        
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH 65

Query: 124 MATTGKECKIKIWDLRKYEVLQTLT-----GHAK---TLDFSQKG-LLAVGT 166
           + T GK C +K+WD+        ++            +      G  L VG 
Sbjct: 66  VYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 9e-08
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK--TLDFSQKG-L 161
           +  H+  V +L F   G    +TGK+  +  W       +      +   + D S     
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320

Query: 162 LAVGTG 167
           +  G+G
Sbjct: 321 IVTGSG 326

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQKGLLAV 164
           H   V         + + T   +  I+++D    + L  L+GH      L ++  G+L  
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 165 GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQ 195
           G+      + D         + G++      
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 51  HILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG 110
            I      +G  M      T L+ +   +    +  +                   +H  
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283

Query: 111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-TLTGHAKT---LDFSQKGLLAVGT 166
             +   F+ + +++ + G E +  I++LR  +++   +   A     ++F  K L+A   
Sbjct: 284 LSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 342

Query: 167 G---SFAQILGDFS 177
               SF +IL DFS
Sbjct: 343 KDGQSFLEIL-DFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 78  FNG--VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
           F    V++ G     + ++       L+++  H G V AL +   G L++ +        
Sbjct: 21  FEDNYVIT-GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 79

Query: 136 W 136
            
Sbjct: 80  D 80

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 3/95 (3%)

Query: 61  RYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN 120
           + +A       +  +           +   V +    T    +        + ++    +
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMGHEIDSINVSQD 310

Query: 121 G--HLMATTGKECKIKIWDLRKYEVLQTLTGHAKT 153
               L A +  +  + I D    E L+++      
Sbjct: 311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 20/190 (10%), Positives = 47/190 (24%), Gaps = 19/190 (10%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK----------IK 134
             +     +       ++  +     P        +G  +A                 ++
Sbjct: 24  FAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81

Query: 135 IWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
           ++D         +                VGT  +   L     +  + ++     V   
Sbjct: 82  VFDPVTLLPTADIELPDAP-------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 195 QIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWVANPFETSKQRREKEVHSLLDK 254
            +   +F+   DV    H    +             + VA   E + +    EV    D+
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 255 LLLETIMLNP 264
            L+     + 
Sbjct: 195 FLINHPAYSQ 204

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 94  WKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
           W+         +  H   V        G+ + +   +  +K+W     + L+TL GH
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALL-----IKMLYHQGPVSALAFHPNGHLMATT 127
             +      V      GTV +W   T   +     ++     G V  +       + A  
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 128 G----KECKIKIWDL 138
                +E K+ + D 
Sbjct: 324 SRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 53  LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPV 112
           +W + +      + G ++    +   + ++  G++  TV +W   T   L  +       
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 113 SALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLT-----GHAK---TLDFSQKG-LL 162
           SA+     N + + T+  +  +K+WDL+  E ++ L      G       +  S    + 
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 163 AVG 165
           AVG
Sbjct: 321 AVG 323

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
           G    ++ +W   T   +  +  HQ   S +    N  ++ +   +  +KIWD++  + L
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCL 250

Query: 145 Q 145
           Q
Sbjct: 251 Q 251

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 1e-08
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWD 137
           G     + ++       +IK L  H+  V+ L +     L  ++G +  IK W+
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 7e-06
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 102 LIKMLY-HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG 160
           ++K +  H   ++AL  +P    + +   + +I  W      + Q  +    +LD S+  
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS--MHQDHSNLIVSLDNSKAQ 58

Query: 161 LLAVGTGSFAQILGDFSGSHNYSRYM 186
             +  +      +   +     S+  
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPK 84

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK-YEVLQTLTGHAK---TLDFSQKG 160
           + +      A        L+AT   +  I I+ +++  ++++ L  H      L +    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270

Query: 161 LLAVG 165
            L   
Sbjct: 271 TLVSS 275

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK--TLDFSQKG-LLAV 164
              PV+++ F P    + T G +  I  W+L+  + ++      +   +  +    +L +
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCL 309

Query: 165 GTGS 168
            T  
Sbjct: 310 ATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYE---VLQTLTGHAK---TLDFSQKGL 161
            +  +S +   P+  L+  T  +  + ++          L     +       +F     
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 162 LAVGTGS 168
           L +  G+
Sbjct: 70  LQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
           +  +P +  +    S G ++ W   T   + K        S +    + +++     +  
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAKFNEDSVVKIACSDNILCLATSDDT 315

Query: 133 IKIWDLRKYEVLQTLTGHA 151
            K        + QT+  +A
Sbjct: 316 FKTNA----AIDQTIELNA 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 86  HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ 145
                +  +      L IK          +AF   G  +   G    + +++    E ++
Sbjct: 269 GVLNRLAKYDLKQRKL-IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Query: 146 TLTGH 150
            +   
Sbjct: 328 NIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 15/144 (10%), Positives = 32/144 (22%), Gaps = 8/144 (5%)

Query: 115 LAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK----TLDFSQKG--LLAVGTGS 168
            A       M  T     + + D+    V ++     K    T   +        +    
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 169 FAQILGDFSGSHNYSRYMGNSMVK--GYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE 226
                 D     N      +S+    G  +   +  P    +    +             
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 227 PNFDSWVANPFETSKQRREKEVHS 250
           P  + +       +K  R   +  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPR 145

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 32/69 (46%)

Query: 93  MWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK 152
                +S   +    H   V +L+F+ +G  + + G + K++ WD++  E + TL  H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 153 TLDFSQKGL 161
            ++  +  L
Sbjct: 333 DIEIEEDIL 341

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)

Query: 73  MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVS----ALAFHPNGHLMATTG 128
           +  N     +      G +  W   T   +  +  H   +      LA   +G  +A  G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 129 KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVG 165
                 ++D++  +        +       + L  V 
Sbjct: 355 ------VFDVKFLKK----GWRSGMGADLNESLCCVC 381

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 6/78 (7%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV----LQTLTGHAKTLDFSQKGLLA 163
           H   + +++   +     +   +  +K+WD +  +      ++ +            +L 
Sbjct: 13  HDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 164 VGTGSFAQILGDFSGSHN 181
                  ++    + S +
Sbjct: 71  AIERDAFELCLVATTSFS 88

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 14/85 (16%)

Query: 79  NGVVSLGHSGGTVTMWKPTTS------ALLIKMLYHQGPVSALAF-------HPNGHLMA 125
           +  VS     G + +W                   H+  +  +              L+A
Sbjct: 25  SFTVS-CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83

Query: 126 TTGKECKIKIWDLRKYEVLQTLTGH 150
           TT     +  + + + +  + +   
Sbjct: 84  TTSFSGDLLFYRITREDETKKVIFE 108

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 10/106 (9%), Positives = 26/106 (24%), Gaps = 3/106 (2%)

Query: 50  VHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ 109
           +  + +         V                     +   +  +    +A  IK +   
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLP 279

Query: 110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHAKT 153
               ++    +G  +   G    +  +D    E    +   G+A  
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASM 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 81  VVSLGHSGGTVTMWKPTTSALL--IKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWD 137
           +++       + +      A+   I +             P G    AT  K   +   D
Sbjct: 4   ILAPARPD-KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 138 LRKYEVLQTLTGHAKTLDFSQKGLLAV 164
           L   E L  +               A+
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAAL 89

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
               V  L +  +   + +  ++  IKIWD    E  + LTGH
Sbjct: 14  TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH 54

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 53  LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMW---------KPTTSALLI 103
           LW +        + G    +  +   N  +  G   G + +W          P  +  L 
Sbjct: 202 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261

Query: 104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD 137
            ++ H G V  L F      + ++  +  I IWD
Sbjct: 262 TLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 51  HILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG 110
             +W   +      + G +  +  +   + +V  G S  T+ +W     A L  +  H+ 
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219

Query: 111 PVSALAFHPNGHLMATTGKECKIKIWDLRK---------YEVLQTLTGHAKT---LDFSQ 158
            V       +   + +   + KIK+WDL              L+TL  H+     L F +
Sbjct: 220 LVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 277

Query: 159 KGLLAVG 165
             +++  
Sbjct: 278 FQIVSSS 284

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 94  WKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT 153
                    +K + H G V  L + P+G  +A+   +  IKIW++   +V +T+    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 154 ------LDFSQKGLLAVGT 166
                 + ++++ L+++  
Sbjct: 283 EDQQLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 5/63 (7%)

Query: 109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQKGLLAVG 165
           +G    L   P G  +        +    +      +  T H+        S  G     
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY-CA 74

Query: 166 TGS 168
           +G 
Sbjct: 75  SGD 77

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 8/50 (16%), Positives = 17/50 (34%)

Query: 87  SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIW 136
           +G +V      +         H    +     P+G+  A+      ++IW
Sbjct: 36  NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 5/55 (9%), Positives = 13/55 (23%), Gaps = 1/55 (1%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQG-PVSALAFHPNGHLMATTGKECKIKIWDL 138
             +  T+ +W   T  +   +          L        + +      I   + 
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 35  YGKSAKAAAKVEKNLVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSG---GTV 91
             ++ +            + + P   R +        +  V       +        G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300

Query: 92  TMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA 151
             +   T     K+   +  ++ L    +   +     + KI  + L K E  +T+    
Sbjct: 301 LKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDK 356

Query: 152 KTL 154
           + L
Sbjct: 357 RPL 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 59  SGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFH 118
           +G  M    + TD + +       S   +    +    +        + +     A+   
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNGHDSDAIIAA 322

Query: 119 PNGH--LMATTGKECKIKIWDLRKYEVLQTL 147
            +G     A +     + I+D    +   ++
Sbjct: 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 16/206 (7%), Positives = 40/206 (19%), Gaps = 30/206 (14%)

Query: 36  GKSAKAAAKVEKNLVHILWIL-PSSGRY-----------MAVAGRRTDLMRVNPFNGVVS 83
            + +              W+     G                    +D    +      +
Sbjct: 31  SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSA 90

Query: 84  LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG--------HLMATTGKECKIKI 135
            G     V ++ P T   +  +     P  ++    +          L+           
Sbjct: 91  KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG 150

Query: 136 WDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQ 195
             +      Q     +         +      +          S   S         G  
Sbjct: 151 LSVPGASDDQLTKSAS------CFHIHPGAAATHYLGSCP--ASLAASDLAAAPAAAGIV 202

Query: 196 IGKVSFRPYEDVLGIGHSMGWSGILV 221
             + +    ++         + G+LV
Sbjct: 203 GAQCTGA--QNCSSQAAQANYPGMLV 226

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 18/90 (20%)

Query: 91  VTMWKPTTSALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKYEVLQTLTG 149
                 T +  +   +      + +A  P+G  +         + + D     +  T   
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT--- 281

Query: 150 HAKTLDFSQKGLLAVGTGSFAQILGDFSGS 179
                       +AVG   +A   G F GS
Sbjct: 282 ------------MAVGKNPYA--SGQFIGS 297

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-CKIKIWDLRKYEV 143
                 +++   T++ +   +     P+      P+G  +         + I D     V
Sbjct: 8   NSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 116 AFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGD 175
               +    AT G +  I++WD+   + +Q  T   + L   Q G++A G G        
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII----- 312

Query: 176 FSGSHN 181
            S S +
Sbjct: 313 -SLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 108 HQGPVSALAFHPNGHLMATT-GKECKIKIWDL--RKYEVLQTLTGHAK----TLDFSQKG 160
            +   + L++ P  + +A   GK   ++  D    K   +   TGH      T+ FS   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 161 ---LLAVG 165
               L  G
Sbjct: 76  GSQYLCSG 83

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 85  GHSGGTVTMWKPTTSALLIKMLYHQGPVS----ALAFHPNGHLMATTGKECKIKIWDL 138
             +  T+ +W  TTS  + K    +  +      +    NG +  +   +  +  ++L
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNFYEL 325

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 85  GHSGGTVTMWK--PTTSALLIKMLYHQGPVSALAFHPNG-HLMATTGKECKIKIWDLRKY 141
                 + +W      +  L +++   G V  +   P+  +L      E ++  + +   
Sbjct: 10  SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69

Query: 142 EVLQTLTGHAKT 153
           +   T    +  
Sbjct: 70  DGALTFAAESAL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.82
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.79
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.77
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.75
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.75
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.55
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.55
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.51
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.5
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.47
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.41
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.39
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.31
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.18
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.18
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.13
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.01
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.86
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.81
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.75
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.6
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.56
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.45
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.36
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.35
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.31
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.26
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.55
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.36
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.74
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.4
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.05
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.8
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.55
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.84
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.74
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.68
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	93.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.3
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.01
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.16
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.64
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.76
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.86

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.3e-26  Score=202.92  Aligned_cols=148  Identities=17%  Similarity=0.254  Sum_probs=128.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .+.++.+.+.+.++++|+.|+.|++||+.++.++..+.+|.+.|++++|+|++.+|++|+.|+.|++||++....+..+ 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence            5677777778888888888888889998888888999999999999999999999999999999999999998887766 


Q ss_pred             ----cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          148 ----TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       148 ----~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                          ...+++++|+|+|  +++++.||.|++||+... .....+.+|..    .|++++|+|++.+|++|+.||.++||.
T Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~H~~----~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                2458999999999  778888999999996554 56666777654    899999999999999999999888873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=7.2e-26  Score=202.22  Aligned_cols=180  Identities=8%  Similarity=0.089  Sum_probs=149.0

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHS--GGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~--dg~v~lwd~~~~~~~~~  104 (359)
                      .+++|+|||++|++|+.                         .|.+++|+|++.+|++++.  +..+++|++.+++....
T Consensus        62 ~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999886                         7999999999999999886  45699999999999999


Q ss_pred             eecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 040274          105 MLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLAVGTGSFAQILGDFSG  178 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~  178 (359)
                      +.+|...|++++|+|++.+ |++|+.|+.|++||+++++.+..+.   ..|+++.|+|++  +++++.|+.|.+||+...
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc
Confidence            9999999999999999885 8889999999999999998888773   468999999999  777888999999997654


Q ss_pred             Cccccccccc---cCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          179 SHNYSRYMGN---SMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       179 ~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      . ....+...   ...|...|++++|+|++++|++|+.||.+.||...++. .+..+.
T Consensus       222 ~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~  277 (311)
T d1nr0a1         222 T-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIP  277 (311)
T ss_dssp             C-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred             c-ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc-EEEEEE
Confidence            2 22222110   00134479999999999999999999999999865543 334443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=3e-25  Score=198.12  Aligned_cols=165  Identities=14%  Similarity=0.207  Sum_probs=140.6

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEeec
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL--IKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~--~~~~~  107 (359)
                      ..++++|+|+.|++++.                      .|++++|+|+|.+|++|+.||+|+|||+.++...  ..+.+
T Consensus        21 ~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~  100 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV  100 (311)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence            57889999999988765                      8999999999999999999999999999987654  45778


Q ss_pred             CCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeEeec---CCceeEEEcCCC---cEEEEcCCcEEEEcCCCCC
Q 040274          108 HQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG---LLAVGTGSFAQILGDFSGS  179 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~  179 (359)
                      |.++|.+++|+|++.+|++++.  +..+++||+.+++.+..+.   ..|++++|+|++   +++++.|+.|++||+... 
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-  179 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-  179 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-
T ss_pred             ccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc-
Confidence            9999999999999999999886  4569999999988877774   458999999998   556788999999996543 


Q ss_pred             ccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          180 HNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .....+..|.    ..|+++.|+|++++|++|+.||.+.+|.
T Consensus       180 ~~~~~~~~~~----~~i~~v~~~p~~~~l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         180 KFKSTFGEHT----KFVHSVRYNPDGSLFASTGGDGTIVLYN  217 (311)
T ss_dssp             EEEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccc----ccccccccCccccccccccccccccccc
Confidence            4455555554    3899999999999999999999888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-24  Score=193.79  Aligned_cols=169  Identities=17%  Similarity=0.163  Sum_probs=149.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML  106 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~  106 (359)
                      .+++|+|||++|++|+.                         .|.+++|+|++.++++++.|+.|.+|++.++++.....
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  180 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999876                         68899999999999999999999999999999988888


Q ss_pred             cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          107 YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       107 ~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      +|...|++++|++++.++++++.|+.|++||+++++.+..+  .+.|.+++|+|++  +++++.++.|.+||+.... . 
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-  258 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K-  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-E-
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc-c-
Confidence            99999999999999999999999999999999999988777  6789999999999  7778899999999975542 2 


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .....|    ...|++++|+|++++|++|+.||.+.+|....+.
T Consensus       259 ~~~~~~----~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         259 YQLHLH----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEECCC----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccccc----ccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            223333    3489999999999999999999999998665543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.2e-24  Score=190.02  Aligned_cols=163  Identities=17%  Similarity=0.278  Sum_probs=141.2

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cce
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTS--ALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~--~~~  102 (359)
                      .+++|+|+|++|++|+.                           .|.+++|+|++.+|++|+.||.|++||+...  ...
T Consensus        55 ~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  134 (337)
T d1gxra_          55 CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             CEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred             EEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc
Confidence            99999999999999987                           5899999999999999999999999998754  455


Q ss_pred             EEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCC
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFS  177 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~  177 (359)
                      ..+..|...+.+++|+|++.++++++.|+.|.+||+.++++....   ...+++++|++++  +++++.|+.|.+||+..
T Consensus       135 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            667789999999999999999999999999999999999887766   4568999999999  77888899999999765


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      . .....+ .+    ...|.+++|+|++.+|++|+.+|.+.+|
T Consensus       215 ~-~~~~~~-~~----~~~i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         215 G-RQLQQH-DF----TSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             T-EEEEEE-EC----SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             c-eeeccc-cc----ccceEEEEEcccccccceeccccccccc
Confidence            4 333222 23    3379999999999999999999988773

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.9e-24  Score=194.59  Aligned_cols=174  Identities=10%  Similarity=0.035  Sum_probs=140.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL--LIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~--~~~  104 (359)
                      .|++|+|||++||+|+.                         .|++|+|+|++++|++|+.|++|+|||+.++..  ...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence            79999999999999876                         799999999999999999999999999987654  445


Q ss_pred             eecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-------cCCceeEEEcCCC--cEEEEcCCcEEEEcC
Q 040274          105 MLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-------TGHAKTLDFSQKG--LLAVGTGSFAQILGD  175 (359)
Q Consensus       105 ~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~  175 (359)
                      +.+|...|++++|+|++++|++++.|++|++|++.........       .+.|.+++|+|+|  +++++.|+.|++||+
T Consensus        91 ~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_          91 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEee
Confidence            5688999999999999999999999999999998765432211       3568999999999  777889999999996


Q ss_pred             CCCCccc--------------cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          176 FSGSHNY--------------SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       176 ~~~~~~~--------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .......              ..+..... +...|.+++|+|+|.+|++++.||.+.+|....+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         171 YIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             ccCccccccccccccccccceeeeeeccC-ccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence            5321100              01111111 44579999999999999999999999998765543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7e-24  Score=193.53  Aligned_cols=155  Identities=11%  Similarity=0.118  Sum_probs=128.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA--LLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      +|+|++|+|++.+|++|+.||.|+|||+.+++  .+..+.+|.++|++++|+|++++|++|+.|++|++||+.++.....
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            79999999999999999999999999998775  5677889999999999999999999999999999999987764333


Q ss_pred             --e---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          147 --L---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       147 --~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                        +   ...+++++|+|++  +++++.++.|++|++............... +...|.+++|+|++.+|++|+.||.+.+
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeecccccccccccccc-cccccccccccccccceeccccCcEEEE
Confidence              3   3458999999999  788889999999986544222111111111 4458999999999999999999999999


Q ss_pred             EEcCC
Q 040274          220 LVPRS  224 (359)
Q Consensus       220 ~~~gs  224 (359)
                      |....
T Consensus       168 ~~~~~  172 (371)
T d1k8kc_         168 FSAYI  172 (371)
T ss_dssp             EECCC
T ss_pred             Eeecc
Confidence            97644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.6e-23  Score=184.34  Aligned_cols=155  Identities=15%  Similarity=0.180  Sum_probs=125.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE-----------
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD-----------  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd-----------  137 (359)
                      .|++|+|+|++.+|++|+.||+|+|||+.++..+..+..|...|++++|+|++.++++++.|+.+.+|+           
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccc
Confidence            799999999999999999999999999999999999999999999999999998888777776666665           


Q ss_pred             ----------------------------------------------------------------------------cCCC
Q 040274          138 ----------------------------------------------------------------------------LRKY  141 (359)
Q Consensus       138 ----------------------------------------------------------------------------~~~~  141 (359)
                                                                                                  ++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~  216 (340)
T d1tbga_         137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC
Confidence                                                                                        3334


Q ss_pred             eeeEee---cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          142 EVLQTL---TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       142 ~~~~~~---~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      +++.++   .+.|++++|+|+|  +++++.|+.|++||+... .....+....  +...|.+++|+|++.+|++|+.||.
T Consensus       217 ~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN--IICGITSVSFSKSGRLLLAGYDDFN  293 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT--CCSCEEEEEECSSSCEEEEEETTSC
T ss_pred             cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc--ccCceEEEEECCCCCEEEEEECCCE
Confidence            444444   2347899999999  778889999999997554 3333222221  3447999999999999999999999


Q ss_pred             EEEEEcCCCC
Q 040274          217 SGILVPRSSE  226 (359)
Q Consensus       217 ~~i~~~gs~~  226 (359)
                      +.+|...+++
T Consensus       294 i~iwd~~~~~  303 (340)
T d1tbga_         294 CNVWDALKAD  303 (340)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999766544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-22  Score=184.84  Aligned_cols=167  Identities=16%  Similarity=0.234  Sum_probs=139.7

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------------ceeEEEEcCCCCEEEEEeCCCeE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------------RTDLMRVNPFNGVVSLGHSGGTV   91 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------------~v~~l~~sp~~~~l~tg~~dg~v   91 (359)
                      +|++|||||++|++|++                                        .|++++|+|++.+|++|+.||.|
T Consensus        66 ~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v  145 (388)
T d1erja_          66 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI  145 (388)
T ss_dssp             CEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccc
Confidence            99999999999999876                                        38899999999999999999999


Q ss_pred             EEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcC-CC--cEEEEc
Q 040274           92 TMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQ-KG--LLAVGT  166 (359)
Q Consensus        92 ~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~-~g--l~~~~~  166 (359)
                      ++||..+++.+..+.+|...|.++.|++++..+++++.++.|++||+.+.......  .....++.+++ ++  +++++.
T Consensus       146 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence            99999999999999999999999999999999999999999999999998876666  33455666665 55  777889


Q ss_pred             CCcEEEEcCCCCCcccccccc----ccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          167 GSFAQILGDFSGSHNYSRYMG----NSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      |+.|.+||+.... ....+..    ... +...|.++.|+|++.+|++|+.||.+.+|
T Consensus       226 d~~i~i~~~~~~~-~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d~~i~iw  281 (388)
T d1erja_         226 DRAVRVWDSETGF-LVERLDSENESGTG-HKDSVYSVVFTRDGQSVVSGSLDRSVKLW  281 (388)
T ss_dssp             TSCEEEEETTTCC-EEEEEC------CC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCeEEEeecccCc-cceeeccccccccC-CCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence            9999999976543 2221111    011 33479999999999999999999988764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.6e-23  Score=178.85  Aligned_cols=164  Identities=15%  Similarity=0.214  Sum_probs=146.2

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .++.++|++.++++++.                       .+.+++|+|++.+|++|+.||.|++|++.++..+..+.+|
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~  184 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH  184 (317)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             eeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC
Confidence            78899999999998876                       6889999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCC--------------------CEEEEecCCCeEEEEEcCCCeeeEeec---CCceeEEEcCCC--cEE
Q 040274          109 QGPVSALAFHPNG--------------------HLMATTGKECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG--LLA  163 (359)
Q Consensus       109 ~~~v~~l~~~p~g--------------------~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g--l~~  163 (359)
                      ...+.+++|+|++                    .++++++.|+.|++||+.+++++.++.   ..|.+++|+|+|  +++
T Consensus       185 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  264 (317)
T d1vyhc1         185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS  264 (317)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEE
Confidence            9999999998753                    478999999999999999999988884   458999999999  777


Q ss_pred             EEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEE
Q 040274          164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGIL  220 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~  220 (359)
                      ++.||.|+|||+.+. ..+..+..|..    .|++++|+|++.+|++|+.||.+.||
T Consensus       265 ~~~dg~i~iwd~~~~-~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         265 CADDKTLRVWDYKNK-RCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             EETTTEEEEECCTTS-CCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             EECCCeEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            889999999996554 56667777754    89999999999999999999988887

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-22  Score=176.75  Aligned_cols=153  Identities=12%  Similarity=0.166  Sum_probs=131.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .+.++.|+|++..+++++.|+.+.+||+.++..+..+.+|...+.+++|+|++.+|++++.|+.|++||+.++..+..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~  182 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR  182 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999988877773


Q ss_pred             ---CCceeEEEcCCC----------------------cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc
Q 040274          149 ---GHAKTLDFSQKG----------------------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP  203 (359)
Q Consensus       149 ---~~v~~~~~s~~g----------------------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  203 (359)
                         ..+.+++|+|++                      +++++.|+.|++||+..+ .....+..|..    .|.+++|+|
T Consensus       183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~----~v~~~~~~~  257 (317)
T d1vyhc1         183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN----WVRGVLFHS  257 (317)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECS
T ss_pred             cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCC----CEEEEEECC
Confidence               346777776542                      466788999999996554 55566666644    899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCC
Q 040274          204 YEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       204 ~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ++.+|++|+.||.+.+|...++.
T Consensus       258 ~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         258 GGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             SSSCEEEEETTTEEEEECCTTSC
T ss_pred             CCCEEEEEECCCeEEEEECCCCc
Confidence            99999999999999998765543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.1e-22  Score=178.49  Aligned_cols=179  Identities=9%  Similarity=0.058  Sum_probs=142.8

Q ss_pred             eEEEECC--CCCEEEEecc-------------------------------ceeEEEEcCCCCEEEEEeC--CCeEEEEeC
Q 040274           52 ILWILPS--SGRYMAVAGR-------------------------------RTDLMRVNPFNGVVSLGHS--GGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~sp--dg~~l~~~~~-------------------------------~v~~l~~sp~~~~l~tg~~--dg~v~lwd~   96 (359)
                      .+++|+|  +|++|++|+.                               +|.+++|+|++.+|++++.  ++.+.+|+.
T Consensus        67 ~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~  146 (325)
T d1pgua1          67 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  146 (325)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEee
Confidence            8999998  6789999875                               5789999999999888764  678999999


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCE-EEEecCCCeEEEEEcCCCeeeEee------cCCceeEEEcCCC---cEEEEc
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHL-MATTGKECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG---LLAVGT  166 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~-l~s~~~d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g---l~~~~~  166 (359)
                      .++.++..+.+|...|++++|+|++.+ +++++.|+.|++||+..++....+      ...|++++|+|++   +++++.
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         147 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             cccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc
Confidence            999999999999999999999998765 778999999999999987765555      2448999999975   677889


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                      |+.|++||+.+. .....+..|.......+.++.| |+|.+|++|+.|+.++||....+. .+..|.
T Consensus       227 d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~  290 (325)
T d1pgua1         227 DRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSK-CVQKWT  290 (325)
T ss_dssp             TCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred             ccceeeeeeccc-cccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCC-EEEEEE
Confidence            999999997554 5556666665422223444444 689999999999999999776543 344444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=9e-22  Score=173.15  Aligned_cols=171  Identities=12%  Similarity=0.102  Sum_probs=129.6

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc------
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSAL------  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~------  101 (359)
                      .+++|+|||++|++|+.                        .|++++|+|++.+ ++++.|+.|++|+......      
T Consensus        16 ~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~   94 (299)
T d1nr0a2          16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAV   94 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccccc
Confidence            89999999999999876                        6899999999865 4566789999998643210      


Q ss_pred             -------eEE--e-------------------------ecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe-
Q 040274          102 -------LIK--M-------------------------LYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT-  146 (359)
Q Consensus       102 -------~~~--~-------------------------~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~-  146 (359)
                             +..  +                         ......+.+++|+|++.+|++++.|+.|++||+.++..... 
T Consensus        95 ~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~  174 (299)
T d1nr0a2          95 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK  174 (299)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   000  0                         01223567889999999999999999999999988765332 


Q ss_pred             -e--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          147 -L--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       147 -~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       .  ...|++++|+|++  +++++.++.|.+||+..... ......... |...|++++|+|++.+|++|+.||.+.+|.
T Consensus       175 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTF-HTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-ESCCCCCCC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccceEEEcCCCEEEEEE
Confidence             2  5679999999999  77888899999999755422 222222222 344899999999999999999999999986


Q ss_pred             cCCC
Q 040274          222 PRSS  225 (359)
Q Consensus       222 ~gs~  225 (359)
                      ....
T Consensus       253 ~~~~  256 (299)
T d1nr0a2         253 MNKP  256 (299)
T ss_dssp             TTCT
T ss_pred             CCCC
Confidence            5443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=6.2e-22  Score=174.20  Aligned_cols=166  Identities=13%  Similarity=0.113  Sum_probs=132.5

Q ss_pred             eEEEECCCCCEEEEecc------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-EeecCCCCe
Q 040274           52 ILWILPSSGRYMAVAGR------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI-KMLYHQGPV  112 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~-~~~~h~~~v  112 (359)
                      .+++++|+|+++++++.                  .+.+++|+|++.+|++|+.||.|.+||+.++.... ....|...|
T Consensus       103 ~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i  182 (299)
T d1nr0a2         103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI  182 (299)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999998887765                  68899999999999999999999999998876543 345789999


Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee------cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc
Q 040274          113 SALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL------TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       113 ~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~  184 (359)
                      ++++|+|++.+|++++.|+.|++||+.++..+...      ...|++++|+|+|  +++++.|+.|++||+.........
T Consensus       183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence            99999999999999999999999999876544332      3468999999999  777889999999997655322222


Q ss_pred             -cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          185 -YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       185 -~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       ...|   +...|.++.| +++.+|++|+.||.+++|.
T Consensus       263 ~~~~~---~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         263 IKGAH---AMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             ETTSS---TTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             EecCC---CCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence             2222   3345666655 5678999999998777764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.9e-22  Score=178.93  Aligned_cols=171  Identities=12%  Similarity=0.195  Sum_probs=138.0

Q ss_pred             eEEEECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      .+++|+|||++|++|+.                       .|.++.|++++..+++|+.+|.|++||..+.........+
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccc
Confidence            88999999999999886                       7899999999999999999999999999988877777665


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----------cCCceeEEEcCCC--cEEEEcCCcEEEEcCC
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----------TGHAKTLDFSQKG--LLAVGTGSFAQILGDF  176 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----------~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~  176 (359)
                      ...+..+.+.+++.+|++++.|+.|++||+.++..+..+          .+.|++++|+|+|  +++++.|+.|++||+.
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            555444444558999999999999999999998876665          2458999999999  7888899999999976


Q ss_pred             CCCccc-----------cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          177 SGSHNY-----------SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       177 ~~~~~~-----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ......           .....    +...|.+++|+|++.+|++|+.||.+.+|...++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIG----HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             --------------CEEEEEEC----CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             CCccccccccccccceeeeccc----ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            542211           11122    34479999999999999999999999998765554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=8.3e-22  Score=176.47  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=137.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNP--FNGVVSLGHSGGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp--~~~~l~tg~~dg~v~lwd~~~~~~~  102 (359)
                      .+++|+|+|..|++++.                           .|++++|+|  ++.+|++|+.||+|+|||+..+...
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~  100 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES  100 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce
Confidence            68899999999988754                           699999998  5679999999999999998765432


Q ss_pred             --------EEeecCCCCeEEEEEecCCCEEEEecC--CCeEEEEEcCCCeeeEeec---CCceeEEEcCCC---cEEEEc
Q 040274          103 --------IKMLYHQGPVSALAFHPNGHLMATTGK--ECKIKIWDLRKYEVLQTLT---GHAKTLDFSQKG---LLAVGT  166 (359)
Q Consensus       103 --------~~~~~h~~~v~~l~~~p~g~~l~s~~~--d~~i~vwd~~~~~~~~~~~---~~v~~~~~s~~g---l~~~~~  166 (359)
                              ..+..|.++|.+++|+|++.++++++.  ++.+.+|+..+++++..+.   ..+++++|+|++   +++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  180 (325)
T d1pgua1         101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  180 (325)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeec
Confidence                    234568899999999999999887764  6789999999999888884   458999999998   567888


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccC-CCEEEEEeCCCeEEEEEcCC
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~g~~dg~~~i~~~gs  224 (359)
                      |+.|++||+... .....+..+.. +...|++++|+|+ +.+|++|+.||.+.+|....
T Consensus       181 d~~v~~~d~~~~-~~~~~~~~~~~-~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         181 DGSVVFYQGPPF-KFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             TTEEEEEETTTB-EEEEEECSSSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             cccccccccccc-ccceecccccC-CCCccEEeeeccccceeccccccccceeeeeecc
Confidence            999999996543 33333333333 4457999999996 68999999999998865443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2e-21  Score=178.46  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=114.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe------ecCCCCeEEEEEecCCCEEEEecCCC---eEEEEEcC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM------LYHQGPVSALAFHPNGHLMATTGKEC---KIKIWDLR  139 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~------~~h~~~v~~l~~~p~g~~l~s~~~d~---~i~vwd~~  139 (359)
                      .+++++|+|++ +|++|+.||+|+|||+.+++++..+      .+|..+|++++|+|+|.+|++|+.|+   .|++||+.
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence            47899999987 8999999999999999998876544      46899999999999999999999886   49999999


Q ss_pred             CCeeeEeec----------------CCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEE
Q 040274          140 KYEVLQTLT----------------GHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       140 ~~~~~~~~~----------------~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  201 (359)
                      +++.+.++.                +.|++++|+|+|  +++++.|++|+|||+.++ ..+..+.+|..........++|
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~  343 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAV  343 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCB
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEE
Confidence            988877662                348999999999  888999999999997654 6777777775411112335778


Q ss_pred             ccCCCEEEEEe
Q 040274          202 RPYEDVLGIGH  212 (359)
Q Consensus       202 sp~~~~l~~g~  212 (359)
                      +|++..+++++
T Consensus       344 ~~~~~~~~~~~  354 (393)
T d1sq9a_         344 DEHGDSLAEPG  354 (393)
T ss_dssp             CTTSCBCSSCC
T ss_pred             CCCCCEEEEcc
Confidence            88887765443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=4.2e-19  Score=154.95  Aligned_cols=165  Identities=12%  Similarity=0.068  Sum_probs=129.4

Q ss_pred             eEEEECCCCCEEEEecc-------------------ceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcceEEee-cCCC
Q 040274           52 ILWILPSSGRYMAVAGR-------------------RTDLMRVNPFNGVVSLGHSGG-TVTMWKPTTSALLIKML-YHQG  110 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------~v~~l~~sp~~~~l~tg~~dg-~v~lwd~~~~~~~~~~~-~h~~  110 (359)
                      .++.+++++..+++++.                   ...+.+++|++..+++++.++ .|++|++........+. .|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  163 (287)
T d1pgua2          84 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA  163 (287)
T ss_dssp             EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred             eeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence            56677788877777665                   334556777788888887765 79999988666555544 5788


Q ss_pred             CeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee----cCCceeEEEcCCC------------cEEEEcCCcEEEEc
Q 040274          111 PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL----TGHAKTLDFSQKG------------LLAVGTGSFAQILG  174 (359)
Q Consensus       111 ~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~v~~~~~s~~g------------l~~~~~d~~i~v~d  174 (359)
                      .+++++|+|++.+|++|+.||.|++||+.++..+...    ...|.+++|+|.+            +++++.|+.|+|||
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~  243 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  243 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE
Confidence            9999999999999999999999999999998765443    4568999998743            67788999999999


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      +.........+.+|..    .|++++|+|++ .|++++.||.+++|.
T Consensus       244 ~~~~~~~~~~~~~h~~----~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         244 VKRPMKIIKALNAHKD----GVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             SSCTTCCEEETTSSTT----CEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             CCCCCeEEEEeCCCCC----CeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            8665555555556644    89999999986 588888898877774

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=1.2e-19  Score=162.71  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=131.9

Q ss_pred             eEEEECC-CCCEEEEecc--------------------ceeEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEeecC
Q 040274           52 ILWILPS-SGRYMAVAGR--------------------RTDLMRVNPFNGVVSLGHSGG--TVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        52 ~~l~~sp-dg~~l~~~~~--------------------~v~~l~~sp~~~~l~tg~~dg--~v~lwd~~~~~~~~~~~~h  108 (359)
                      |.-.||| ||+++|+++.                    .|.+++|+|||+.|++++.+.  .|++||..++. +..+..|
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~   84 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEEN   84 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCC
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCC
Confidence            6788999 9999998876                    899999999999988776553  79999998876 4466789


Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEE-EE----------cCCcEEEE
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLA-VG----------TGSFAQIL  173 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~-~~----------~d~~i~v~  173 (359)
                      .+.|.+++|+|+|++|++++.++.+++|++.++.....+   ...+.+++|+|+| +++ ++          .++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            999999999999999999999999999999998877666   3457899999999 443 22          12468899


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      |+... ... .+..+    ...+.++.|+|+|++|++++.++.+.+|..
T Consensus       165 d~~~~-~~~-~~~~~----~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         165 DMEGR-KIF-AATTE----NSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             ETTTT-EEE-ECSCS----SSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccC-cee-eeccc----ccccccccccCCCCEEEEEeCCCceEcccc
Confidence            96544 222 22222    236889999999999999999988777654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.2e-19  Score=156.50  Aligned_cols=144  Identities=16%  Similarity=0.238  Sum_probs=115.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec-
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT-  148 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~-  148 (359)
                      ...+.+++++.+|++|+.||.|++||+.++.++..+.+|...|.++++++  ++|++++.|+.|++||+...+....+. 
T Consensus       178 ~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~  255 (342)
T d2ovrb2         178 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQG  255 (342)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccc
Confidence            34556667888999999999999999999999999999999999888765  599999999999999999888776663 


Q ss_pred             -----CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcccccccc-ccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          149 -----GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMG-NSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       149 -----~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                           ..+.++.++++.+++++.||.|++||+.++ ..+..+.. +...+...|++++|+|++.+|++|+.||.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             TTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             cceeeeceeecccCCCeeEEEcCCCEEEEEECCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence                 234666776665889999999999997665 34433321 11113447999999999999999999873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5e-19  Score=157.45  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=119.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-  147 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-  147 (359)
                      .+.++.|+|++.++++++.||.|++||+.++..+..+.+|...|++++|++  .+|++++.||.|++||+.++...... 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  280 (355)
T d1nexb2         203 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYH  280 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceecccc
Confidence            678899999999999999999999999999999999999999999999864  69999999999999999988765554 


Q ss_pred             cCCceeE-EEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          148 TGHAKTL-DFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       148 ~~~v~~~-~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ...+.++ .+++++ +++++.|+.|+|||+.++......+..|.    ..|++++|+|+ .++++++.||.+.||+
T Consensus       281 ~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~----~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA----DQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             CTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTC----SEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCC----CCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            4445444 567777 88888899999999766533333444554    38999999987 4778888899776654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=6e-19  Score=161.64  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             ceeEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCc------------------ceEEeecCCCCeEEEEEecCCCEEE
Q 040274           69 RTDLMRVNPF-----NGVVSLGHSGGTVTMWKPTTSA------------------LLIKMLYHQGPVSALAFHPNGHLMA  125 (359)
Q Consensus        69 ~v~~l~~sp~-----~~~l~tg~~dg~v~lwd~~~~~------------------~~~~~~~h~~~v~~l~~~p~g~~l~  125 (359)
                      .+..++|+++     +.++++++.||+|.+|++....                  .......+...+++++|+|++ +|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la  199 (393)
T d1sq9a_         121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA  199 (393)
T ss_dssp             CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred             ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEE
Confidence            4566777764     3578899999999999974221                  011112455678999999998 899


Q ss_pred             EecCCCeEEEEEcCCCeeeEee---------cCCceeEEEcCCC--cEEEEcCC---cEEEEcCCCCCccccc-------
Q 040274          126 TTGKECKIKIWDLRKYEVLQTL---------TGHAKTLDFSQKG--LLAVGTGS---FAQILGDFSGSHNYSR-------  184 (359)
Q Consensus       126 s~~~d~~i~vwd~~~~~~~~~~---------~~~v~~~~~s~~g--l~~~~~d~---~i~v~d~~~~~~~~~~-------  184 (359)
                      +|+.|++|++||+.+++++..+         ...|++++|+|+|  +++++.|+   .|++||+..+. ....       
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-~~~~l~~~~~~  278 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHS  278 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC---
T ss_pred             EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccce-eeeeecccccc
Confidence            9999999999999999887665         2358999999999  77777776   48999976542 2222       


Q ss_pred             ------cccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCCCceeeec
Q 040274          185 ------YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSEPNFDSWV  233 (359)
Q Consensus       185 ------~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~~~~~~~~  233 (359)
                            +.+|.    ..|++++|+|++++|++|+.|+.+++|...++. .+..+.
T Consensus       279 ~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~-~~~~l~  328 (393)
T d1sq9a_         279 SQASLGEFAHS----SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLN  328 (393)
T ss_dssp             -----CCBSBS----SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred             ccceeeeeccc----CceeeeccCCCCCeeEEECCCCEEEEEECCCCC-EEEEEC
Confidence                  22443    489999999999999999999999999876664 344443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=1.4e-18  Score=155.77  Aligned_cols=124  Identities=10%  Similarity=0.058  Sum_probs=107.5

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++|||||++|++++.                        .|.+++|+|++++|++++.++.+.+|++.++.....+..
T Consensus        46 ~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  125 (360)
T d1k32a3          46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS  125 (360)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeec
Confidence            89999999999987664                        789999999999999999999999999999998888889


Q ss_pred             CCCCeEEEEEecCCCEEEEec----------CCCeEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEcCCcEEEE
Q 040274          108 HQGPVSALAFHPNGHLMATTG----------KECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGTGSFAQIL  173 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~----------~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~  173 (359)
                      |...+.+++|+|+|.+|+.++          .++.+++||+.+++.....  ...+..+.|+|+|  +++++.++.+.+|
T Consensus       126 ~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            999999999999999998643          3567999999988765554  3457889999999  7777888888888


Q ss_pred             cC
Q 040274          174 GD  175 (359)
Q Consensus       174 d~  175 (359)
                      |.
T Consensus       206 d~  207 (360)
T d1k32a3         206 DR  207 (360)
T ss_dssp             CS
T ss_pred             cc
Confidence            74

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=7.1e-18  Score=149.86  Aligned_cols=164  Identities=13%  Similarity=0.148  Sum_probs=125.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeecC
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG  149 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~~  149 (359)
                      ++|++|  ++++|++|+.||+|+|||+.+++++..+.+|.++|++++|+|+ .+|++|+.|++|++|++...........
T Consensus        16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~   92 (355)
T d1nexb2          16 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG   92 (355)
T ss_dssp             EEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccc
Confidence            466655  5789999999999999999999999999999999999999986 5899999999999999998877665521


Q ss_pred             -----CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc----------------------------------------
Q 040274          150 -----HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY----------------------------------------  182 (359)
Q Consensus       150 -----~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~----------------------------------------  182 (359)
                           ....+.+++++  +++++.|+.|++||+.......                                        
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (355)
T d1nexb2          93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN  172 (355)
T ss_dssp             CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred             ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence                 13556677777  6777888999999864321000                                        


Q ss_pred             -------------------cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE------------------------
Q 040274          183 -------------------SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI------------------------  219 (359)
Q Consensus       183 -------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i------------------------  219 (359)
                                         ........ +...+.++.|+|++.++++++.||.+.+                        
T Consensus       173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~  251 (355)
T d1nexb2         173 IVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL  251 (355)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred             eeeeecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeecccccccccccccccccccccc
Confidence                               00000011 2335778899999999999999998876                        


Q ss_pred             ----EEcCCCCCceeeeccCCC
Q 040274          220 ----LVPRSSEPNFDSWVANPF  237 (359)
Q Consensus       220 ----~~~gs~~~~~~~~~~~~~  237 (359)
                          +++++.|+.+++|+.+..
T Consensus       252 ~~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         252 SDKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             CSSEEEEECTTSEEEEEETTTC
T ss_pred             ccceeeeeeccccccccccccc
Confidence                356777888999987644

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=8.4e-18  Score=148.22  Aligned_cols=89  Identities=8%  Similarity=-0.038  Sum_probs=68.6

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEE
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIK  104 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~-~~~l~tg~~dg~v~lwd~~~~~~~~~  104 (359)
                      .+|+|+|+|++||+|+.                          +|.+++|+|+ +.+|++|+.||.|++|++........
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~   94 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA   94 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccc
Confidence            89999999999999886                          7999999986 55899999999999999988776665


Q ss_pred             eecCCCC-eEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274          105 MLYHQGP-VSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus       105 ~~~h~~~-v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      ...+... .....+.+++..+++++.|+.+++||++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          95 LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             ccccccccccccccccccccccccccccccceeeccc
Confidence            5544333 33444555666777777777777777643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-17  Score=144.34  Aligned_cols=165  Identities=14%  Similarity=0.266  Sum_probs=119.7

Q ss_pred             EEEEecc-ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCC
Q 040274           62 YMAVAGR-RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK  140 (359)
Q Consensus        62 ~l~~~~~-~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~  140 (359)
                      .++.|.. .|.+ +++++|++|+||+.||+|+|||+.+++++.++.+|.+.|++++|+|+  +|++++.|+.+++|+...
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            3445544 5544 35667899999999999999999999999999999999999999875  899999999998888543


Q ss_pred             CeeeE---------------------------------------------------------------------------
Q 040274          141 YEVLQ---------------------------------------------------------------------------  145 (359)
Q Consensus       141 ~~~~~---------------------------------------------------------------------------  145 (359)
                      .....                                                                           
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence            21100                                                                           


Q ss_pred             -----eecC-CceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeE
Q 040274          146 -----TLTG-HAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  217 (359)
Q Consensus       146 -----~~~~-~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~  217 (359)
                           .+.+ ......+++++  +++++.|+.|++||+... .....+..|..    .+.++.++  +++|++|+.||.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~~--~~~l~s~s~d~~i  239 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQS----LTSGMELK--DNILVSGNADSTV  239 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEECCCCS----CEEEEEEE--TTEEEEEETTSCE
T ss_pred             ceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc-eeeeEeccccc----ceeEEecC--CCEEEEEcCCCEE
Confidence                 0000 01233344455  778888999999996554 45555555543    67777665  5699999999988


Q ss_pred             EE-------------------------------EEcCCCCCceeeeccCC
Q 040274          218 GI-------------------------------LVPRSSEPNFDSWVANP  236 (359)
Q Consensus       218 ~i-------------------------------~~~gs~~~~~~~~~~~~  236 (359)
                      .+                               +++++.|+.+++|++..
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCC
Confidence            77                               46677788888888653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1e-17  Score=145.97  Aligned_cols=124  Identities=15%  Similarity=0.303  Sum_probs=105.5

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-e
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIK-M  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~-~  105 (359)
                      ...++++++..+++++.                         .+++|+|+|++.+|++|+.||.|++||+.++..+.. +
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc
Confidence            44566778888777654                         789999999999999999999999999998876553 6


Q ss_pred             ecCCCCeEEEEEecC----------CCEEEEecCCCeEEEEEcCC-CeeeEee---cCCceeEEEcCCC-cEEEEcCCcE
Q 040274          106 LYHQGPVSALAFHPN----------GHLMATTGKECKIKIWDLRK-YEVLQTL---TGHAKTLDFSQKG-LLAVGTGSFA  170 (359)
Q Consensus       106 ~~h~~~v~~l~~~p~----------g~~l~s~~~d~~i~vwd~~~-~~~~~~~---~~~v~~~~~s~~g-l~~~~~d~~i  170 (359)
                      .+|...|++++|+|+          +.+|++|+.|++|++||+.. ...+..+   .+.|++++|+|++ +++++.|+.|
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v  281 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACI  281 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCE
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeE
Confidence            689999999999874          46899999999999999977 4455555   3468999999999 9999999999


Q ss_pred             EEEcC
Q 040274          171 QILGD  175 (359)
Q Consensus       171 ~v~d~  175 (359)
                      ++|++
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-16  Score=136.32  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=115.4

Q ss_pred             EECCCCCEEEEecc-----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--------
Q 040274           55 ILPSSGRYMAVAGR-----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--------  103 (359)
Q Consensus        55 ~~spdg~~l~~~~~-----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--------  103 (359)
                      ++++||++|++|+.                       .|++|+|  ++++|++|+.||.|++|++..+....        
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~   97 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA   97 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence            45678999999987                       7778776  56799999999999999986543221        


Q ss_pred             -----------------------------------EeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274          104 -----------------------------------KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus       104 -----------------------------------~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                                                         .+..|...|.++.+.  ...+++++.|+.|++||+++++++..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~  175 (293)
T d1p22a2          98 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN  175 (293)
T ss_dssp             EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEc
Confidence                                               122344555555544  4578889999999999999999888885


Q ss_pred             C---CceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          149 G---HAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       149 ~---~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      +   .+..+.+++..+++++.|+.|++||+... .....+..+..    .+.  .+++++.+|++|+.||.+.+|..
T Consensus       176 ~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~----~v~--~~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVR--CIRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEE--EEECCSSEEEEEETTSCEEEEEH
T ss_pred             ccccccccccCCCCeEEEecCCCEEEEEecccc-eeeeeecccce----eee--eccccceEEEEEcCCCEEEEEEC
Confidence            4   35566666554889999999999996554 44444444432    444  46678899999999999988853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-16  Score=137.40  Aligned_cols=141  Identities=15%  Similarity=0.236  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT  148 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~  148 (359)
                      .|+|++  +++++|++|+.||+|+|||+.+++++..+.+|.+.|++++|  ++++|++|+.|+.|++|++..+.......
T Consensus        17 ~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          17 GVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             CEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence            577765  57899999999999999999999999999999999999887  57899999999999999999987766663


Q ss_pred             C-CceeEEEc-CCC-cEEEEcCCcEEEEcCCCCCcccc--ccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEE
Q 040274          149 G-HAKTLDFS-QKG-LLAVGTGSFAQILGDFSGSHNYS--RYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGI  219 (359)
Q Consensus       149 ~-~v~~~~~s-~~g-l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i  219 (359)
                      . ......+. ..+ ++++..++.+.+||.........  .+..    +...|.++.+.  ...+++++.|+.+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~--~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          93 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG----HRAAVNVVDFD--DKYIVSASGDRTIKV  162 (293)
T ss_dssp             CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC----CSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             ccccccccccccccceeecccccceeEeeccccccccccccccc----cccccccceec--ccccccccCCCceee
Confidence            2 22223333 334 88889999999999655432221  1122    22345555543  345666777776655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=9.8e-17  Score=141.21  Aligned_cols=155  Identities=13%  Similarity=0.067  Sum_probs=114.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE---EeecCCCCeEEEEEecC-CCEEEEecCCCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI---KMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~---~~~~h~~~v~~l~~~p~-g~~l~s~~~d~~i~vwd~~~~~~~  144 (359)
                      .|++|+|+|++.+|++|+.||+|+|||+.++....   ...+|.++|++++|+|+ +.+|++|+.|+.|++|++......
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence            69999999999999999999999999998765433   33379999999999986 457999999999999999987665


Q ss_pred             Eeec---CC-ceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccc---cccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          145 QTLT---GH-AKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSR---YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       145 ~~~~---~~-v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ....   .. .....+.+++  +++++.++.+.+||+.........   ...+.  .......+.+.+.+..+++++.||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~  170 (342)
T d1yfqa_          93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSRLIVGMNNS  170 (342)
T ss_dssp             EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSEEEEEESTT
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccceeeeccccccc--ccceeeeeeeeccCCceeeecCCC
Confidence            5552   11 2334444444  888899999999996443222111   11111  222456677888999999999999


Q ss_pred             eEEEEEcCCC
Q 040274          216 WSGILVPRSS  225 (359)
Q Consensus       216 ~~~i~~~gs~  225 (359)
                      .+.+|.....
T Consensus       171 ~i~~~~~~~~  180 (342)
T d1yfqa_         171 QVQWFRLPLC  180 (342)
T ss_dssp             EEEEEESSCC
T ss_pred             cEEEEecccC
Confidence            9988765433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=3.8e-15  Score=138.02  Aligned_cols=144  Identities=8%  Similarity=-0.102  Sum_probs=108.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--Ee---ecCCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--KM---LYHQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--~~---~~h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~  142 (359)
                      .+..++|||||++|++++.||+|++||+.+++...  .+   ..|.+.+.++.|+|||++| ++++.++.|.+||..+++
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence            79999999999999999999999999998876432  22   3566677777888999986 678889999999999998


Q ss_pred             eeEeecC--------------CceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC
Q 040274          143 VLQTLTG--------------HAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       143 ~~~~~~~--------------~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      ++..+..              ....+.++|+|   +++...++.|.+||..... .......+   .+..+.++.|+|+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~-~~~~~~i~---~g~~~~~~~~spdg  218 (432)
T d1qksa2         143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTEIS---AERFLHDGGLDGSH  218 (432)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-EEEEEEEE---CCSSEEEEEECTTS
T ss_pred             ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC-cceEEEEc---ccCccccceECCCC
Confidence            8776622              23568899999   3445567899999965432 22211111   23368899999999


Q ss_pred             CEEEEEeCCCe
Q 040274          206 DVLGIGHSMGW  216 (359)
Q Consensus       206 ~~l~~g~~dg~  216 (359)
                      +++++++.++.
T Consensus       219 ~~~~va~~~~~  229 (432)
T d1qksa2         219 RYFITAANARN  229 (432)
T ss_dssp             CEEEEEEGGGT
T ss_pred             CEEEEeccccc
Confidence            99888876553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.7e-13  Score=120.64  Aligned_cols=166  Identities=10%  Similarity=0.070  Sum_probs=120.2

Q ss_pred             eEEEECCCCCEEEEe-cc----------------------------ceeEEEEcCCCCEEEEEe------------CCCe
Q 040274           52 ILWILPSSGRYMAVA-GR----------------------------RTDLMRVNPFNGVVSLGH------------SGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~-~~----------------------------~v~~l~~sp~~~~l~tg~------------~dg~   90 (359)
                      .+++|+|||++|+++ +.                            .+..++|+|++.++++++            .++.
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence            689999999998544 33                            356889999999988776            3578


Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec----------------------
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT----------------------  148 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------  148 (359)
                      +.+||..++..+..+.. ...+++++|+|+|.++++++.+  +.+||..+++....+.                      
T Consensus       117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         117 VALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             EEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             eeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence            99999999988877764 4567899999999999998755  5678876554333220                      


Q ss_pred             -----------------------------------------------CCceeEEEcCCCcEEEEcCCcEEEEcCCCCCcc
Q 040274          149 -----------------------------------------------GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHN  181 (359)
Q Consensus       149 -----------------------------------------------~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~  181 (359)
                                                                     ..+.++.++|++.+..+.++.|.+||+.+. ..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~  272 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN-AS  272 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTT-EE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCC-cE
Confidence                                                           012344556666233344688999997655 33


Q ss_pred             ccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      ...+. +    +..+.+++|+|||++|++++.+|.+.+|...+.+
T Consensus       273 ~~~~~-~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         273 IKRVP-L----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEEE-C----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EEEEc-C----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            33332 2    2268999999999999999999988888877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.55  E-value=8e-13  Score=114.47  Aligned_cols=150  Identities=10%  Similarity=0.080  Sum_probs=107.1

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC-CeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVS-LGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-CKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~-tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d-~~i~vwd~~~~~~~~~  146 (359)
                      .+.++.|+|++..++ ++..++.+.+|+..+...+..+..+ ..+.++.++|++..+++++.+ +.+.+|+.........
T Consensus       117 ~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            567788888877654 4445677888888877776666543 457889999999988777655 6777888887776666


Q ss_pred             e--cCCceeEEEcCCC--cEEEEc---CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEE-EEEeCCCeEE
Q 040274          147 L--TGHAKTLDFSQKG--LLAVGT---GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSG  218 (359)
Q Consensus       147 ~--~~~v~~~~~s~~g--l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~g~~dg~~~  218 (359)
                      +  ...+..++|+++|  ++.++.   ++.|.+||+.+. .....+..+     ..+.+++|+|||++| ++++.++.+.
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~-----~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG-----PDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCC-----CCEEEEEEeCCCCEEEEEECCCCeEE
Confidence            5  3446789999999  433332   368999996554 444444333     258999999999987 5666788888


Q ss_pred             EEEcCCC
Q 040274          219 ILVPRSS  225 (359)
Q Consensus       219 i~~~gs~  225 (359)
                      +|...++
T Consensus       270 v~D~~t~  276 (301)
T d1l0qa2         270 VIDTATN  276 (301)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            8876554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=5.1e-14  Score=129.82  Aligned_cols=133  Identities=8%  Similarity=-0.011  Sum_probs=95.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE--eec------CCc
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ--TLT------GHA  151 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~--~~~------~~v  151 (359)
                      -++++++.||+|.|||+.+++.+.++..|. .+.+++|+|||++|++++.|++|++||+.++++..  .+.      +.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            356778899999999999999999998764 58999999999999999999999999999887533  231      224


Q ss_pred             eeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccC-------CCCcceeEEEEccCCCEEEEEeCC
Q 040274          152 KTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSM-------VKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       152 ~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                      .+++|+|||  + +++..++.+.+||.... ........+..       .+......+.+++++..++....+
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            677888999  3 34447899999996554 33333332211       012234556667777666655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=4.3e-14  Score=130.80  Aligned_cols=146  Identities=10%  Similarity=-0.023  Sum_probs=106.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEeec-----
Q 040274           76 NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTLT-----  148 (359)
Q Consensus        76 sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~~-----  148 (359)
                      ++++-++++.+.||+|.|||..+++++..+..|. .+..++|+|||++|++++.|++|.+||+.+++.  +..++     
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3344456899999999999999999999998764 589999999999999999999999999988763  33331     


Q ss_pred             -CCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccC-------CCCcceeEEEEccCCCEEE-EEeCCCe
Q 040274          149 -GHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSM-------VKGYQIGKVSFRPYEDVLG-IGHSMGW  216 (359)
Q Consensus       149 -~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~-~g~~dg~  216 (359)
                       +.+.++.|||||  + ++++.++.|.+||..+. .....+..+..       .+......+.++|+|..++ +...++.
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence             224566788899  3 45667899999997654 33333322211       1233567788999987754 4555677


Q ss_pred             EEEEEcC
Q 040274          217 SGILVPR  223 (359)
Q Consensus       217 ~~i~~~g  223 (359)
                      +.+|...
T Consensus       187 i~~~d~~  193 (432)
T d1qksa2         187 ILLVDYT  193 (432)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcc
Confidence            7666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=5.4e-13  Score=117.74  Aligned_cols=75  Identities=17%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             EEECCCCCEEEEecc------------------------ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecC
Q 040274           54 WILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYH  108 (359)
Q Consensus        54 l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h  108 (359)
                      ++++++|+||++++.                        .+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            578899999999886                        56799999999986 55567899999999999887766532


Q ss_pred             C------CCeEEEEEecCCCEEEEec
Q 040274          109 Q------GPVSALAFHPNGHLMATTG  128 (359)
Q Consensus       109 ~------~~v~~l~~~p~g~~l~s~~  128 (359)
                      .      ..+..++|+|||.++++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEe
Confidence            2      2356788899988876653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=1.8e-12  Score=119.20  Aligned_cols=144  Identities=7%  Similarity=-0.065  Sum_probs=99.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe-----ecCCCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM-----LYHQGPVSALAFHPNGHLMAT-TGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~-----~~h~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~~~  142 (359)
                      .+..++|||||++|++++.||+|++||+.++++....     .+|.+.+.+++|+|||+++++ +..++.+.+||..++.
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~  142 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  142 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence            7899999999999999999999999999998765432     256667778888999998755 4578999999999988


Q ss_pred             eeEeecCC---c-----------eeEEEcCCC--cE-EEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCC
Q 040274          143 VLQTLTGH---A-----------KTLDFSQKG--LL-AVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYE  205 (359)
Q Consensus       143 ~~~~~~~~---v-----------~~~~~s~~g--l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  205 (359)
                      ++..+..+   +           ..+.+++++  ++ +....+.+.+++.............    .+..+..+.|+|++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g  218 (426)
T d1hzua2         143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG----AAPFLADGGWDSSH  218 (426)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE----CCSSEEEEEECTTS
T ss_pred             eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec----cCCccEeeeECCCC
Confidence            77666321   2           344555555  22 2222344555543222111111222    33468899999999


Q ss_pred             CEEEEEeCCCe
Q 040274          206 DVLGIGHSMGW  216 (359)
Q Consensus       206 ~~l~~g~~dg~  216 (359)
                      ++++++..+..
T Consensus       219 ~~~~~a~~~~~  229 (426)
T d1hzua2         219 RYFMTAANNSN  229 (426)
T ss_dssp             CEEEEEETTCS
T ss_pred             cEEEeeeeccc
Confidence            99888776553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1.3e-12  Score=114.72  Aligned_cols=137  Identities=12%  Similarity=0.009  Sum_probs=103.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEeec--CCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEeecC-------
Q 040274           80 GVVSLGHSGGTVTMWKPTTSALLIKMLY--HQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTLTG-------  149 (359)
Q Consensus        80 ~~l~tg~~dg~v~lwd~~~~~~~~~~~~--h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~~~-------  149 (359)
                      .++++++.|+.|.+||+.+++.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..       
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4799999999999999999999888864  34567899999999987 5667899999999999998877732       


Q ss_pred             -CceeEEEcCCC--cEEEE------------cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCC
Q 040274          150 -HAKTLDFSQKG--LLAVG------------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSM  214 (359)
Q Consensus       150 -~v~~~~~s~~g--l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~d  214 (359)
                       .+..++|+|+|  +++++            .++.+.+||.... .....+..+     ..+.+++|+|+|.++++++.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEAP-----RQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEECC-----SSCCCEEECTTSSCEEEESSS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-eEEEecccc-----CCceEEEEcCCCCEEEEEcCC
Confidence             35689999999  44443            2467888885544 333333333     257889999999999998766


Q ss_pred             CeEEEEEcCC
Q 040274          215 GWSGILVPRS  224 (359)
Q Consensus       215 g~~~i~~~gs  224 (359)
                      .  .+|....
T Consensus       156 ~--~~~d~~~  163 (337)
T d1pbyb_         156 L--HVMDPEA  163 (337)
T ss_dssp             E--EEEETTT
T ss_pred             c--ceeeeec
Confidence            4  4555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.41  E-value=1.3e-11  Score=106.69  Aligned_cols=141  Identities=11%  Similarity=0.103  Sum_probs=110.0

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVV-SLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l-~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..|.. +..++|++++.+++ ++..++.+.+||..+++.+..
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeee
Confidence            57889999999977 5667889999999999999988877654 68899999998655 556778999999999988877


Q ss_pred             e--cCCceeEEEcCCC--c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCe
Q 040274          147 L--TGHAKTLDFSQKG--L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       147 ~--~~~v~~~~~s~~g--l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~  216 (359)
                      +  ...+.++.|+|+|  + +++..++.+.+|+.... .....+..+.     .+.++.|+|++..+++++.+..
T Consensus       112 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVGR-----SPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECCS-----SEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecccCC-----CceEEEeeccccceeeeccccc
Confidence            7  3456889999999  3 34445788999996544 3343433332     5788999999999888876643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.39  E-value=3.7e-12  Score=112.20  Aligned_cols=136  Identities=7%  Similarity=-0.025  Sum_probs=100.0

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-cCCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCCeeeEeec--
Q 040274           73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-YHQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKYEVLQTLT--  148 (359)
Q Consensus        73 l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~~~~~~~~--  148 (359)
                      ++|++++.+|++++.|++|.+||+.+++.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.  
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999999988886 456678899999999987 556678999999999998887762  


Q ss_pred             -------CCceeEEEcCCC--cEEEE------------cCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCE
Q 040274          149 -------GHAKTLDFSQKG--LLAVG------------TGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       149 -------~~v~~~~~s~~g--l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  207 (359)
                             ..+..++|+|||  +++++            .++.+.+||.... .....+..+.  ....+..+.+++++.+
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAKPVRTFP--MPRQVYLMRAADDGSL  158 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-GGBCCSEEEE--CCSSCCCEEECTTSCE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc-eeeeEEEeee--ccCceEEEEecCCCEE
Confidence                   135789999999  43333            2567788875443 2222232221  1124566677777776


Q ss_pred             EEEE
Q 040274          208 LGIG  211 (359)
Q Consensus       208 l~~g  211 (359)
                      ++++
T Consensus       159 ~~~~  162 (346)
T d1jmxb_         159 YVAG  162 (346)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            6553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.4e-11  Score=108.15  Aligned_cols=89  Identities=11%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~~  103 (359)
                      .+|+|||||++|++++.                           .+..++|+|||++|++++. ++.|.+|+........
T Consensus        40 ~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~  119 (333)
T d1ri6a_          40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG  119 (333)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccccee
Confidence            89999999999966553                           5778999999999988875 6789999877654433


Q ss_pred             E--eecCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCC
Q 040274          104 K--MLYHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRK  140 (359)
Q Consensus       104 ~--~~~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~  140 (359)
                      .  ...+...++++.++|+++++++++. +..|.+|+...
T Consensus       120 ~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         120 VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            3  3356777889999999998777664 45688887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.5e-11  Score=107.95  Aligned_cols=139  Identities=9%  Similarity=0.074  Sum_probs=94.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEe--ecCCCCeEEEEEecCCCEEEEe-cCCCeEEEEEcCCCeeeEee------cCCc
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKM--LYHQGPVSALAFHPNGHLMATT-GKECKIKIWDLRKYEVLQTL------TGHA  151 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~--~~h~~~v~~l~~~p~g~~l~s~-~~d~~i~vwd~~~~~~~~~~------~~~v  151 (359)
                      .+++++.|++|++|++++...+..+  ..|.+.+.+++|+|||++|+++ ..|+.|.+|++........+      ...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577889999999999765443333  3688999999999999998554 45899999999865432222      3457


Q ss_pred             eeEEEcCCC--cEEEEc-CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCC-eEEEEEc
Q 040274          152 KTLDFSQKG--LLAVGT-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMG-WSGILVP  222 (359)
Q Consensus       152 ~~~~~s~~g--l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg-~~~i~~~  222 (359)
                      ..++|+|||  +++++. ++.|.+|+.... ..........  +...+.++.|+|+++++++++.++ .+.+|..
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccc-cceecccccC--CCccceEEEeeecceeeeccccccceeeEEEe
Confidence            789999999  555554 568888874333 2221111111  223578899999999888777544 4555443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=4.4e-10  Score=99.44  Aligned_cols=169  Identities=12%  Similarity=0.087  Sum_probs=111.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------------ceeEEEEcCCCCEEEEEe--CCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------------RTDLMRVNPFNGVVSLGH--SGG   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------------~v~~l~~sp~~~~l~tg~--~dg   89 (359)
                      ..++|||||++|++.+.                                        ....++|+|++.++++++  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            57899999998876431                                        235678999999887765  456


Q ss_pred             eEEEEeCCCCcceEEeecCC---------------------------------------------CCeEEEEEecCCCEE
Q 040274           90 TVTMWKPTTSALLIKMLYHQ---------------------------------------------GPVSALAFHPNGHLM  124 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~~~~h~---------------------------------------------~~v~~l~~~p~g~~l  124 (359)
                      .+.+|+..++..+..+..+.                                             ..+....+.+++..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  209 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence            88999998876554433211                                             112233455566677


Q ss_pred             EEecCCCeEEEEEcCCCeee--Eeec-------------CCceeEEEcCCC--cEEEEcC----------CcEEEEcCCC
Q 040274          125 ATTGKECKIKIWDLRKYEVL--QTLT-------------GHAKTLDFSQKG--LLAVGTG----------SFAQILGDFS  177 (359)
Q Consensus       125 ~s~~~d~~i~vwd~~~~~~~--~~~~-------------~~v~~~~~s~~g--l~~~~~d----------~~i~v~d~~~  177 (359)
                      ++++.++.+++|++..+...  ....             .....+++++++  ++....+          +.|.+||+.+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence            78888999999999876532  1111             123468889988  3333221          3689999665


Q ss_pred             CCccccccccccCCCCcceeEEEEccCCC--EEEEEeCCCeEEEEEcCCCC
Q 040274          178 GSHNYSRYMGNSMVKGYQIGKVSFRPYED--VLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~g~~dg~~~i~~~gs~~  226 (359)
                      . .....+...     ..+.+++|+|||+  ++++++.++.+.+|...++.
T Consensus       290 ~-~~~~~~~~~-----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         290 G-ERLAKFEMG-----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             C-CEEEEEEEE-----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             C-cEEEEecCC-----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            5 344433322     2689999999997  34566778888888776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.18  E-value=1.9e-09  Score=96.06  Aligned_cols=152  Identities=9%  Similarity=0.009  Sum_probs=96.9

Q ss_pred             ceeEEEEcCCCCE-EEEEeCCCeEEEEeCCCCcceEEeecCC------CCeEEEEEecCCCEEEEecCCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGV-VSLGHSGGTVTMWKPTTSALLIKMLYHQ------GPVSALAFHPNGHLMATTGKECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~-l~tg~~dg~v~lwd~~~~~~~~~~~~h~------~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~  141 (359)
                      ...++.++|++.. +++++.||.+.+|+..++........+.      .....+.+++++. ++..+.++.+.+|+....
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAA  244 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCC
Confidence            3457778887764 4677788999999988776655543221      2233455555554 456667889999998876


Q ss_pred             eeeEee---------------cCCceeEEEcCCC------------cEEEEcCCcEEEEcCCCCCccccccccccCCCCc
Q 040274          142 EVLQTL---------------TGHAKTLDFSQKG------------LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY  194 (359)
Q Consensus       142 ~~~~~~---------------~~~v~~~~~s~~g------------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  194 (359)
                      ......               ++....+++++++            +++...++.+.+||+.+. .....+.     ++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~~-----~~~  318 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQIS-----LGH  318 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC-cEEEEec-----CCC
Confidence            432211               1123445666665            223344578899996555 3333332     222


Q ss_pred             ceeEEEEccCCCE--EEEEeCCCeEEEEEcCCCCC
Q 040274          195 QIGKVSFRPYEDV--LGIGHSMGWSGILVPRSSEP  227 (359)
Q Consensus       195 ~v~~~~~sp~~~~--l~~g~~dg~~~i~~~gs~~~  227 (359)
                      .+.+++|+|||+.  +++++.++.+.+|...++..
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            6899999999984  46788888888888776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.18  E-value=1.5e-10  Score=107.35  Aligned_cols=141  Identities=10%  Similarity=0.077  Sum_probs=100.3

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee-----cCCCCeEEEEEecCCCEEEEecC---------CCeEEEEE
Q 040274           72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML-----YHQGPVSALAFHPNGHLMATTGK---------ECKIKIWD  137 (359)
Q Consensus        72 ~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~-----~h~~~v~~l~~~p~g~~l~s~~~---------d~~i~vwd  137 (359)
                      .+.|.+++.+++.  .|+.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4567777766653  46789999999998765444     44578999999999999988753         56789999


Q ss_pred             cCCCeeeEe--ecCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCcccccccccc-C-------------CCCcceeEEE
Q 040274          138 LRKYEVLQT--LTGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNS-M-------------VKGYQIGKVS  200 (359)
Q Consensus       138 ~~~~~~~~~--~~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~-------------~~~~~v~~~~  200 (359)
                      +.+++....  .+..+..+.||||| .++...++.+.+|+...+. ......... .             ........+.
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            998875332  25568899999999 7777888999999965542 222111100 0             0112346688


Q ss_pred             EccCCCEEEEEeCCC
Q 040274          201 FRPYEDVLGIGHSMG  215 (359)
Q Consensus       201 ~sp~~~~l~~g~~dg  215 (359)
                      |||||+.|++...|.
T Consensus       178 wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         178 WSPNGTFLAYAQFND  192 (470)
T ss_dssp             ECTTSSEEEEEEEEC
T ss_pred             ECCCCCccceeEecC
Confidence            999999999887543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.13  E-value=3.2e-09  Score=94.57  Aligned_cols=171  Identities=9%  Similarity=-0.078  Sum_probs=114.4

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGH----------SGGTVTMWK   95 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~----------~dg~v~lwd   95 (359)
                      .+++++|||+.+++...                          ....++|+|||++|++++          .++.|.+||
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence            88889999999876422                          334799999999998875          357899999


Q ss_pred             CCCCcceEEeecCCCCe-------EEEEEecCCCEEEEec--CCCeEEEEEcCCCeeeEeecCCceeEEEcCCC---cEE
Q 040274           96 PTTSALLIKMLYHQGPV-------SALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKG---LLA  163 (359)
Q Consensus        96 ~~~~~~~~~~~~h~~~v-------~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~v~~~~~s~~g---l~~  163 (359)
                      +.+++.+..+..+....       ..+.|+|++..++...  .++.+.+|+....+...... .+.++.++|+|   +++
T Consensus       104 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~~~v~  182 (373)
T d2madh_         104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-SPTCYHIHPGAPSTFYL  182 (373)
T ss_pred             CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-cceeEEEecCCCcEEEE
Confidence            99999888877665543       4577888888765543  45678899988776655543 35678899998   567


Q ss_pred             EEcCCcEEEEcCCCCCccccccccccCC--CCcceeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          164 VGTGSFAQILGDFSGSHNYSRYMGNSMV--KGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       164 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      .+.|+.+.+|+.... ........+...  .......+.+++++.++ ..+.++.+.++....+
T Consensus       183 ~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         183 LCAQGGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA  244 (373)
T ss_pred             EcCCCeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence            788999999996544 222222111100  11123445566665544 4445666655554443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=4.9e-09  Score=92.45  Aligned_cols=148  Identities=12%  Similarity=0.032  Sum_probs=98.0

Q ss_pred             ceeEEEEcCCCCEEEEE----------eCCCeEEEEeCCCCcceEEeecCCC-------CeEEEEEecCCCEEEEec--C
Q 040274           69 RTDLMRVNPFNGVVSLG----------HSGGTVTMWKPTTSALLIKMLYHQG-------PVSALAFHPNGHLMATTG--K  129 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg----------~~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~l~~~p~g~~l~s~~--~  129 (359)
                      ....++|||||++|++.          +.|+.|.+||+.+++.+..+..+..       ....++|+|+|.+++.++  .
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            44578999999988764          3478999999999988877654332       335689999999877664  4


Q ss_pred             CCeEEEEEcCCCeeeEeecCC----------ceeEEEcCCC-cEE--EEcCCcEEEEcCCCCCccccccccccCCCCcce
Q 040274          130 ECKIKIWDLRKYEVLQTLTGH----------AKTLDFSQKG-LLA--VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQI  196 (359)
Q Consensus       130 d~~i~vwd~~~~~~~~~~~~~----------v~~~~~s~~g-l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v  196 (359)
                      +..+.+||..+++.+..+..+          ...+.++++| .+.  ...++.+.+++.....      ..    +...+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~----~~~~~  197 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PE----DEFLI  197 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CT----TSCBC
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ce----eccee
Confidence            678999999999888776332          2234444444 111  1122333333321110      11    12245


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 040274          197 GKVSFRPYEDVLGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       197 ~~~~~sp~~~~l~~g~~dg~~~i~~~gs~~  226 (359)
                      .+..+++++..++.++.++.+.+|....+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             eeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence            667788889999999999988888766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=5.8e-09  Score=93.17  Aligned_cols=169  Identities=8%  Similarity=-0.087  Sum_probs=100.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------------ceeEEEEcCCCCEEEEEe-CCCe
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------------RTDLMRVNPFNGVVSLGH-SGGT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------------~v~~l~~sp~~~~l~tg~-~dg~   90 (359)
                      ..+.|+|||++|++.+.                                        ....++|+|||++|++++ .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            46889999999887542                                        123588999999888776 5789


Q ss_pred             EEEEeCCCCcceEEeecCCCC-------eEEEEEecCCCEEEEecC----------------------------------
Q 040274           91 VTMWKPTTSALLIKMLYHQGP-------VSALAFHPNGHLMATTGK----------------------------------  129 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~-------v~~l~~~p~g~~l~s~~~----------------------------------  129 (359)
                      |.+||+.+++.+..+..+...       ...+.+++||.+++....                                  
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            999999998877766544322       122334444443333211                                  


Q ss_pred             --CCeEEEEEcCCCeeeEee--c-------------CCceeEEEcCCC--c-EEEEcC--------CcEEEEcCCCCCcc
Q 040274          130 --ECKIKIWDLRKYEVLQTL--T-------------GHAKTLDFSQKG--L-LAVGTG--------SFAQILGDFSGSHN  181 (359)
Q Consensus       130 --d~~i~vwd~~~~~~~~~~--~-------------~~v~~~~~s~~g--l-~~~~~d--------~~i~v~d~~~~~~~  181 (359)
                        .+.++++++..+......  .             +....+++++++  + ++...+        ..|.+||..+. ..
T Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~  306 (368)
T d1mdah_         228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QT  306 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CE
T ss_pred             ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-cE
Confidence              122333333332221111  0             112457778887  2 222222        25889996555 33


Q ss_pred             ccccccccCCCCcceeEEEEccCCCE--EEEEeCCCeEEEEEcCCCC
Q 040274          182 YSRYMGNSMVKGYQIGKVSFRPYEDV--LGIGHSMGWSGILVPRSSE  226 (359)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~g~~dg~~~i~~~gs~~  226 (359)
                      ...+...     ..+.+++|+|||+.  ++++..++.+.+|...++.
T Consensus       307 ~~~~~~~-----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         307 SGPISNG-----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EECCEEE-----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEecCC-----CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            3333322     26889999999973  4566667888888766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=6e-08  Score=84.18  Aligned_cols=169  Identities=9%  Similarity=-0.016  Sum_probs=117.1

Q ss_pred             eEEEECCCCCEEEEecc---------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-EEee--c
Q 040274           52 ILWILPSSGRYMAVAGR---------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALL-IKML--Y  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~-~~~~--~  107 (359)
                      -.++++|||+++++...                     .+.+++|+|+|.+++++..++.+.+|+....... ..+.  .
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP  110 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC
Confidence            37899999998887654                     7899999999999999888888888876543221 1221  3


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee-c------------CCceeEEEcCCC-cEEEEcCCcEEEE
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL-T------------GHAKTLDFSQKG-LLAVGTGSFAQIL  173 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~-~------------~~v~~~~~s~~g-l~~~~~d~~i~v~  173 (359)
                      .....+.+++.++|+++++.+.++.+..+|...+...... .            ..+..+.++.+. +++.+..+.|..+
T Consensus       111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~  190 (302)
T d2p4oa1         111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRI  190 (302)
T ss_dssp             TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEec
Confidence            4566899999999999999899999999998876532221 0            123566676655 5555667888888


Q ss_pred             cCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 040274          174 GDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPR  223 (359)
Q Consensus       174 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~g  223 (359)
                      +..............   .......++|+++|+++++...++.+..+.+.
T Consensus       191 ~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         191 PVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            854432221111100   11246779999999988888778877776553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=3.9e-09  Score=97.54  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=89.0

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeC---------CCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHS---------GGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~---------dg~v~lwd~   96 (359)
                      +++.|.+||.++.....                          .|.++.||||+++|++++.         ++.+.+||+
T Consensus        20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            78889998887765443                          5899999999999988753         578899999


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec---------------------CCceeEE
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT---------------------GHAKTLD  155 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~---------------------~~v~~~~  155 (359)
                      .+++ +..+..|...+..+.|||||+.+|.. .++.+++|+..++.......                     +....+.
T Consensus       100 ~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         100 NKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9886 45577888999999999999999985 56789999999887554331                     1235688


Q ss_pred             EcCCC--cEEEEcC
Q 040274          156 FSQKG--LLAVGTG  167 (359)
Q Consensus       156 ~s~~g--l~~~~~d  167 (359)
                      |||||  ++....|
T Consensus       178 wSPDGk~ia~~~~d  191 (470)
T d2bgra1         178 WSPNGTFLAYAQFN  191 (470)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCccceeEec
Confidence            99999  5554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=4e-07  Score=81.09  Aligned_cols=153  Identities=13%  Similarity=0.095  Sum_probs=93.5

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcce---EEee--cCCCCeEEEEEecCCCEEEEec-CCCeEEEEEcCCC
Q 040274           69 RTDLMRVNPFNGVVSLGHS-GGTVTMWKPTTSALL---IKML--YHQGPVSALAFHPNGHLMATTG-KECKIKIWDLRKY  141 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~-dg~v~lwd~~~~~~~---~~~~--~h~~~v~~l~~~p~g~~l~s~~-~d~~i~vwd~~~~  141 (359)
                      .++++.|+|+|+++++++. ...|.+|+......+   ..+.  ........++|+|+++++++.. .+++|.+||+...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            3679999999998888764 457888876543222   1111  2345678899999999875554 6889999998764


Q ss_pred             ee--eEe---ec-----------------CCceeEEEcCCC-cE-EEE-cC-----CcEEEEcCCCCCccccccc-cccC
Q 040274          142 EV--LQT---LT-----------------GHAKTLDFSQKG-LL-AVG-TG-----SFAQILGDFSGSHNYSRYM-GNSM  190 (359)
Q Consensus       142 ~~--~~~---~~-----------------~~v~~~~~s~~g-l~-~~~-~d-----~~i~v~d~~~~~~~~~~~~-~~~~  190 (359)
                      ..  +..   ++                 .....+.++|+| ++ ++. .+     ..|..|++...+....... ....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            32  111   11                 013578999999 33 332 22     2377777554332221111 1111


Q ss_pred             CCCcceeEEEEcc-CCCEEEEEe-CCCeEEEEE
Q 040274          191 VKGYQIGKVSFRP-YEDVLGIGH-SMGWSGILV  221 (359)
Q Consensus       191 ~~~~~v~~~~~sp-~~~~l~~g~-~dg~~~i~~  221 (359)
                      ..+....+++|+| +|++|+++. .++.+.+|.
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            1233567799998 889887664 456666664

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=6.3e-07  Score=75.54  Aligned_cols=156  Identities=10%  Similarity=0.116  Sum_probs=91.6

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHS-GGT--VTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~-dg~--v~lwd~~~~~~~~  103 (359)
                      .+.+|||||++||....                         ...+..|+|+|..++..+. ++.  +..+...... ..
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~  120 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR  120 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EE
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc-ce
Confidence            67899999999997644                         5678899999998877664 333  2233322222 22


Q ss_pred             EeecCCCCeEEEEEecCCCEEEE-ecCCC--eEEEEEcCCCeeeEee--cCCceeEEEcCCC--cEEEEc-CCcEEEEcC
Q 040274          104 KMLYHQGPVSALAFHPNGHLMAT-TGKEC--KIKIWDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVGT-GSFAQILGD  175 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s-~~~d~--~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~~-d~~i~v~d~  175 (359)
                      ....+........+++++..++. ...++  .|.++++..+......  ........|+|+|  ++..+. ++...+|..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~  200 (269)
T d2hqsa1         121 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  200 (269)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             eeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEe
Confidence            33344455566677777766544 44444  4666666655432222  3445678999999  444444 344444432


Q ss_pred             CCCCccccccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          176 FSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      .......... ...    .......|+|||+.|+..+.
T Consensus       201 ~~~~~~~~~~-~~~----~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         201 DLATGGVQVL-SST----FLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             ETTTCCEEEC-CCS----SSCEEEEECTTSSEEEEEEE
T ss_pred             ecccccceEe-ecC----ccccceEECCCCCEEEEEEc
Confidence            2221222222 221    24677899999999876554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=5.6e-07  Score=76.07  Aligned_cols=167  Identities=10%  Similarity=0.009  Sum_probs=112.6

Q ss_pred             eEEEECCCCCEEEEecc------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec
Q 040274           52 ILWILPSSGRYMAVAGR------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY  107 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~  107 (359)
                      .+++++++|+..++...                        ....+++++++.++++...++.+.+++..+...+..+. 
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-   95 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-   95 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-
Confidence            78899999997665432                        56789999999888777777777776655544333322 


Q ss_pred             CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeE-ee--cCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccc
Q 040274          108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-TL--TGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNY  182 (359)
Q Consensus       108 h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~-~~--~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~  182 (359)
                      .....++++++++++++++-.....+..++........ ..  ......++++++|  +++...++.|..||........
T Consensus        96 ~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~  175 (260)
T d1rwia_          96 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV  175 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred             eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeee
Confidence            23456899999999988887777778888766533211 11  2346889999998  4444556789999854332211


Q ss_pred             cccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 040274          183 SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILVPRS  224 (359)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~~gs  224 (359)
                      ... ..    ......+++.++|.++++....+.+..+.+..
T Consensus       176 ~~~-~~----~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         176 LPF-TD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CCC-SS----CCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             eec-cc----cCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            111 11    12468899999999888888888777666543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=1e-06  Score=74.44  Aligned_cols=162  Identities=7%  Similarity=-0.055  Sum_probs=108.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ  109 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~  109 (359)
                      ..++++++|+.+++...                      ...+|++++++.++++-..+..+..++..............
T Consensus        60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  139 (260)
T d1rwia_          60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  139 (260)
T ss_dssp             CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC
T ss_pred             eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeeccc
Confidence            78899999987776544                      57899999998888777667778888776543222211223


Q ss_pred             CCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee---cCCceeEEEcCCC-cEEEEc-CCcEEEEcCCCCCccccc
Q 040274          110 GPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL---TGHAKTLDFSQKG-LLAVGT-GSFAQILGDFSGSHNYSR  184 (359)
Q Consensus       110 ~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~v~~~~~s~~g-l~~~~~-d~~i~v~d~~~~~~~~~~  184 (359)
                      ....+++++|+|+++++...++.|..+|..........   ......++++++| ++.+.. .+.|..++....  ....
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--~~~~  217 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTV  217 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS--CCEE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC--eEEE
Confidence            45578999999999888888899999998754332221   2346889999999 555554 567888874322  2222


Q ss_pred             cccccCCCCcceeEEEEccCCCEEEEEeCCCeEE
Q 040274          185 YMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSG  218 (359)
Q Consensus       185 ~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~  218 (359)
                      +...   .......++++++|.++++-..++.|.
T Consensus       218 ~~~~---~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         218 LPFT---GLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             CCCC---SCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             EccC---CCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            2111   112468899999998766655555444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=5.9e-08  Score=86.40  Aligned_cols=142  Identities=5%  Similarity=-0.128  Sum_probs=91.1

Q ss_pred             eeEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEeecCCC-------CeEEEEEecCCCEEEEec-CCC
Q 040274           70 TDLMRVNPFNGVVSLGH----------SGGTVTMWKPTTSALLIKMLYHQG-------PVSALAFHPNGHLMATTG-KEC  131 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~----------~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~l~~~p~g~~l~s~~-~d~  131 (359)
                      ...++|+|||.+|++.+          .|+.|.+||+.+++++..+..+..       ....++|+|||++|++++ .++
T Consensus        67 ~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            45789999999888764          367899999999998887764432       234689999999988775 579


Q ss_pred             eEEEEEcCCCeeeEeecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccc-cCCCCcceeEEEEccCCCE
Q 040274          132 KIKIWDLRKYEVLQTLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGN-SMVKGYQIGKVSFRPYEDV  207 (359)
Q Consensus       132 ~i~vwd~~~~~~~~~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~  207 (359)
                      .+.+||+.+++.+..+..+- +..++|.+   +++.+.||.+.+|+.............. ...+...+..+.+.+++..
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  225 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             eEEEEECCCCcEeEEeeccC-cceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence            99999999999888774321 11112222   5556667777777654432221111000 0002224556777777766


Q ss_pred             EEEEe
Q 040274          208 LGIGH  212 (359)
Q Consensus       208 l~~g~  212 (359)
                      +.+.+
T Consensus       226 ~~~~~  230 (368)
T d1mdah_         226 VWAVA  230 (368)
T ss_dssp             EECBS
T ss_pred             EEecC
Confidence            55543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.60  E-value=9.8e-07  Score=79.78  Aligned_cols=169  Identities=9%  Similarity=-0.034  Sum_probs=109.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCC--EEEEEeCCC---------------
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNG--VVSLGHSGG---------------   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~--~l~tg~~dg---------------   89 (359)
                      .....+|||++|++...                         .++.++|+|+++  +++.++.+.               
T Consensus        75 s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          75 SMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             ceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            44445799999987654                         678899999987  444444332               


Q ss_pred             --eEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC-------------------------------------
Q 040274           90 --TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE-------------------------------------  130 (359)
Q Consensus        90 --~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d-------------------------------------  130 (359)
                        .+..+|..+......+... +....+.|+|+|+++++++.+                                     
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred             cceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence              2356888887777666543 456889999999998776543                                     


Q ss_pred             ----CeEEEEEcCCCeeeEee--cCCceeEEEcCCC-c--EEEEcCCcEEEEcCCCCCc-------cccccccccCCCCc
Q 040274          131 ----CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG-L--LAVGTGSFAQILGDFSGSH-------NYSRYMGNSMVKGY  194 (359)
Q Consensus       131 ----~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g-l--~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~  194 (359)
                          +.+.+++......+..+  ......+.++||| +  +++..+++|.|||+.....       ....+..+.. .+-
T Consensus       234 v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~-~gl  312 (441)
T d1qnia2         234 IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE-LGL  312 (441)
T ss_dssp             CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB-CCS
T ss_pred             eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc-ccc
Confidence                23344444444455555  3346889999999 3  3344679999999643211       1111112111 222


Q ss_pred             ceeEEEEccCCCEEEEEeCCCeEEEEEc
Q 040274          195 QIGKVSFRPYEDVLGIGHSMGWSGILVP  222 (359)
Q Consensus       195 ~v~~~~~sp~~~~l~~g~~dg~~~i~~~  222 (359)
                      ......|+++|..+.+...|..+..|.-
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             CcccceecCCceEEEcccccceEEEecc
Confidence            3456689999988888888888877763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.56  E-value=4.4e-06  Score=71.99  Aligned_cols=159  Identities=9%  Similarity=-0.032  Sum_probs=104.4

Q ss_pred             eEEEECCCCCEEEEecc--------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEe
Q 040274           52 ILWILPSSGRYMAVAGR--------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKM  105 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~--------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~  105 (359)
                      .+++|++||+++++...                          .++.+++.+++.++++.+.++.+..+++.++.....+
T Consensus        71 ~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1          71 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEe
Confidence            89999999998877533                          4678899999988888888899999988876432221


Q ss_pred             e----------cCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe---e--cCCceeEEEcCCC-cE-EEEcCC
Q 040274          106 L----------YHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT---L--TGHAKTLDFSQKG-LL-AVGTGS  168 (359)
Q Consensus       106 ~----------~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~---~--~~~v~~~~~s~~g-l~-~~~~d~  168 (359)
                      .          ........+.++. +.++++.+..+.|+.+|+........   +  ......++++++| ++ +...++
T Consensus       151 ~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~  229 (302)
T d2p4oa1         151 EHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN  229 (302)
T ss_dssp             ECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             cCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCC
Confidence            1          1122356666654 34566667788999998875432211   1  3446789999999 44 444678


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEE---ccCCCEEEEEeCCC
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF---RPYEDVLGIGHSMG  215 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~~g~~dg  215 (359)
                      .|..|+.......+.....    .....++++|   ++|++.|++++..|
T Consensus       230 ~V~~i~p~G~~~~~~~~~~----~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         230 SVVRIAPDRSTTIIAQAEQ----GVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CEEEECTTCCEEEEECGGG----TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cEEEECCCCCEEEEEecCC----CCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            8999974321111111111    1225789999   67888887766554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.56  E-value=1.6e-05  Score=67.57  Aligned_cols=159  Identities=12%  Similarity=0.113  Sum_probs=107.3

Q ss_pred             ECCCCCEEEEecc----ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecC
Q 040274           56 LPSSGRYMAVAGR----RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGK  129 (359)
Q Consensus        56 ~spdg~~l~~~~~----~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~  129 (359)
                      ++++|..+.+.+.    ....+++.+++.++++....+.+.+++.+ ++.+..+.  .+......++++++++++++...
T Consensus        98 ~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_          98 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             ccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc
Confidence            3455554443322    56788899999888888778888888865 45555553  45567788999999999888888


Q ss_pred             CCeEEEEEcCCCeeeEeec-----CCceeEEEcCCC-cEEEE-c-CCcEEEEcCCCCCccccccccccCCCCcceeEEEE
Q 040274          130 ECKIKIWDLRKYEVLQTLT-----GHAKTLDFSQKG-LLAVG-T-GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF  201 (359)
Q Consensus       130 d~~i~vwd~~~~~~~~~~~-----~~v~~~~~s~~g-l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  201 (359)
                      .+.|++||.. ++.+.++.     ..+..|+++++| ++.+. . ++.|.+|+ ..+ .....+....  .....+.+++
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G-~~~~~~~~~~--~~~~p~~vav  251 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDG-QLISALESKV--KHAQCFDVAL  251 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTS-CEEEEEEESS--CCSCEEEEEE
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCC-CEEEEEeCCC--CCCCEeEEEE
Confidence            9999999965 66777762     236889999999 55443 3 34699998 333 3333333221  2235788899


Q ss_pred             ccCCCEEEEEeCCCeEEEEE
Q 040274          202 RPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       202 sp~~~~l~~g~~dg~~~i~~  221 (359)
                      .|+|.++ +++.++.+++|-
T Consensus       252 ~~dG~l~-V~~~n~~v~~fr  270 (279)
T d1q7fa_         252 MDDGSVV-LASKDYRLYIYR  270 (279)
T ss_dssp             ETTTEEE-EEETTTEEEEEE
T ss_pred             eCCCcEE-EEeCCCeEEEEE
Confidence            9998644 444556555543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.50  E-value=1.4e-05  Score=69.17  Aligned_cols=159  Identities=13%  Similarity=0.108  Sum_probs=98.5

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeC---------------CC
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHS---------------GG   89 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~---------------dg   89 (359)
                      ..+.|+++|+.|+++..                           ..+.++++++|.+.++-..               +|
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            57899999987666543                           2577899999987776432               23


Q ss_pred             eEEEEeCCCCcceEEeecCCCCeEEEEEecCCC-----EEEEecCCCeEEEEEcCCCeee------EeecC----CceeE
Q 040274           90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGH-----LMATTGKECKIKIWDLRKYEVL------QTLTG----HAKTL  154 (359)
Q Consensus        90 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~-----~l~s~~~d~~i~vwd~~~~~~~------~~~~~----~v~~~  154 (359)
                      .|..++.. ++.. .+..+...-+.++|+|++.     ++++-+..+.|..||+.....+      ..+.+    ....+
T Consensus       154 ~v~~~~~d-g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         154 SIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEEeec-Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            55555543 3322 2223333457899999764     4555567889999987643221      12221    24578


Q ss_pred             EEcCCC-c-EEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEE-EeCCCeE
Q 040274          155 DFSQKG-L-LAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGI-GHSMGWS  217 (359)
Q Consensus       155 ~~s~~g-l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-g~~dg~~  217 (359)
                      ++..+| + ++....+.|.+||.. ++.....+...    ...+++++|.|+++.|++ .+.+|.+
T Consensus       232 avD~~GnlyVa~~~~g~I~~~dp~-~g~~~~~i~~p----~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         232 DFDEDNNLLVANWGSSHIEVFGPD-GGQPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTT-CBSCSEEEECS----SSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEecCCcEEEEEcCCCEEEEEeCC-CCEEEEEEECC----CCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            999999 4 444457889999843 33343333332    236889999999875543 3444433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.45  E-value=3.2e-06  Score=75.08  Aligned_cols=124  Identities=11%  Similarity=0.132  Sum_probs=84.3

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSAL  101 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~  101 (359)
                      .++.|+|||++|+++..                             ....++|+|+++++++.. .+++|.+|++..+..
T Consensus       148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            68999999999988754                             566799999999876655 678999999876543


Q ss_pred             eEEee-------------------cCCCCeEEEEEecCCCEEEEecC------CCeEEEEEcCCCeeeEe---e------
Q 040274          102 LIKML-------------------YHQGPVSALAFHPNGHLMATTGK------ECKIKIWDLRKYEVLQT---L------  147 (359)
Q Consensus       102 ~~~~~-------------------~h~~~v~~l~~~p~g~~l~s~~~------d~~i~vwd~~~~~~~~~---~------  147 (359)
                      .....                   .+......+.++|+|++|+++..      ...|..|++.....+..   +      
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  307 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC
Confidence            22111                   11123467899999999888643      23477777764322111   1      


Q ss_pred             cCCceeEEEcC-CC--cEEE-EcCCcEEEEcC
Q 040274          148 TGHAKTLDFSQ-KG--LLAV-GTGSFAQILGD  175 (359)
Q Consensus       148 ~~~v~~~~~s~-~g--l~~~-~~d~~i~v~d~  175 (359)
                      ..+..+++++| +|  ++++ ..++.|.+|++
T Consensus       308 G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            23468899998 67  3333 35689999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.39  E-value=1.3e-06  Score=79.02  Aligned_cols=128  Identities=7%  Similarity=-0.028  Sum_probs=86.5

Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEeec------------------------------CCCCeEEEEEecCCCEEEEe-cCC
Q 040274           82 VSLGHSGGTVTMWKPTTSALLIKMLY------------------------------HQGPVSALAFHPNGHLMATT-GKE  130 (359)
Q Consensus        82 l~tg~~dg~v~lwd~~~~~~~~~~~~------------------------------h~~~v~~l~~~p~g~~l~s~-~~d  130 (359)
                      +++|+.+|.|++|++.+++.+..+..                              |........++|||++|+.+ ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788899999999988876665421                              22233444457899988655 468


Q ss_pred             CeEEEEEcCCCeeeEeec----CCceeEEEcCCC---cEEEEcCCcE------------------EEEcCCCCCcccccc
Q 040274          131 CKIKIWDLRKYEVLQTLT----GHAKTLDFSQKG---LLAVGTGSFA------------------QILGDFSGSHNYSRY  185 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~~----~~v~~~~~s~~g---l~~~~~d~~i------------------~v~d~~~~~~~~~~~  185 (359)
                      +.|.++|+.++++...+.    ..+..++|+|+|   ++++..+..+                  ..+|..+. .....+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~-~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-DVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC-SEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc-eeeEEE
Confidence            899999999998876552    346889999999   5555544444                  33453322 222222


Q ss_pred             ccccCCCCcceeEEEEccCCCEEEEEeCCC
Q 040274          186 MGNSMVKGYQIGKVSFRPYEDVLGIGHSMG  215 (359)
Q Consensus       186 ~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg  215 (359)
                      ...     .....+.|+|+|+++++++.+.
T Consensus       173 ~v~-----~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         173 IVD-----GNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EES-----SCCCCEEECSSSSEEEEEESCT
T ss_pred             ecC-----CCccceEECCCCCEEEEEecCC
Confidence            211     2467899999999999888664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.36  E-value=1.2e-05  Score=68.35  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCeEEEEEecCCCEEEEecC-CCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPVSALAFHPNGHLMATTGK-ECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~p~g~~l~s~~~-d~~i~vwd~~~~~~~~  145 (359)
                      ....+++++++.++++....+.|.+||.. ++.+..+.  ++.....+++++|+|+++++-+. ++.|.+|+. .|+.+.
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             ccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEE
Confidence            56778888888888888888999999975 56666653  34455789999999998777543 457999984 577777


Q ss_pred             eec-----CCceeEEEcCCC-cEEEEcCCcEEEEcC
Q 040274          146 TLT-----GHAKTLDFSQKG-LLAVGTGSFAQILGD  175 (359)
Q Consensus       146 ~~~-----~~v~~~~~s~~g-l~~~~~d~~i~v~d~  175 (359)
                      ++.     .....+++.|+| +++++.++.|++|..
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY  271 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEe
Confidence            762     246889999999 777778889999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.35  E-value=2.9e-05  Score=67.25  Aligned_cols=159  Identities=12%  Similarity=0.076  Sum_probs=100.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------ceeEEEEcCCCCEEEEEeC------CCeEEEEeC
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------RTDLMRVNPFNGVVSLGHS------GGTVTMWKP   96 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------~v~~l~~sp~~~~l~tg~~------dg~v~lwd~   96 (359)
                      ..|++++||+++++...                             .++.+.+.|+|.+.++...      .+.+..+++
T Consensus        85 ~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~  164 (319)
T d2dg1a1          85 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP  164 (319)
T ss_dssp             EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred             eEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec
Confidence            78999999998876421                             4677889999986665432      234666665


Q ss_pred             CCCcceEEeecCCCCeEEEEEecCCCEE-EEecCCCeEEEEEcCCC-eeeEee--------c--CCceeEEEcCCC--cE
Q 040274           97 TTSALLIKMLYHQGPVSALAFHPNGHLM-ATTGKECKIKIWDLRKY-EVLQTL--------T--GHAKTLDFSQKG--LL  162 (359)
Q Consensus        97 ~~~~~~~~~~~h~~~v~~l~~~p~g~~l-~s~~~d~~i~vwd~~~~-~~~~~~--------~--~~v~~~~~s~~g--l~  162 (359)
                      ..+. +..+...-...+.++|+|+++.| ++-+..+.|..||+... ......        .  .....+++.++|  ++
T Consensus       165 dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V  243 (319)
T d2dg1a1         165 DFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV  243 (319)
T ss_dssp             TSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred             ccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE
Confidence            5433 33333334456889999999865 55566789999998642 211111        1  124679999999  45


Q ss_pred             EEEcCCcEEEEcCCCCCccccccccccC--CCCcceeEEEEccCCCEEEEEeC
Q 040274          163 AVGTGSFAQILGDFSGSHNYSRYMGNSM--VKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       163 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                      +...++.|.+|| ..+ ..+..+.....  -+...+++++|.|++..+++...
T Consensus       244 a~~~~g~V~~~~-p~G-~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         244 AMYGQGRVLVFN-KRG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEETTTEEEEEC-TTS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEcCCCEEEEEC-CCC-cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            555678999999 444 33333321110  02235789999998877766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.8e-06  Score=79.37  Aligned_cols=139  Identities=9%  Similarity=-0.057  Sum_probs=89.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecC---CCCeEEEEEecCCCEEEEec---------CCCeEEEEEcCCC
Q 040274           74 RVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH---QGPVSALAFHPNGHLMATTG---------KECKIKIWDLRKY  141 (359)
Q Consensus        74 ~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h---~~~v~~l~~~p~g~~l~s~~---------~d~~i~vwd~~~~  141 (359)
                      .|.+++.+++. ..+|.|.+||+.+++....+..+   .-.+....|||||++++.+.         ..+.+.+||+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            46677665543 45788999999888654444332   23577888999999977653         3578999999987


Q ss_pred             eeeEee-----cCCceeEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccC-------------CCCcceeEEEEc
Q 040274          142 EVLQTL-----TGHAKTLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSM-------------VKGYQIGKVSFR  202 (359)
Q Consensus       142 ~~~~~~-----~~~v~~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s  202 (359)
                      ......     .+.+....||||| .++-..++.|.+.+...+.....+..+...             .....-..+.||
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            653322     2335668999999 777777889999886443221111111100             000112467899


Q ss_pred             cCCCEEEEEeC
Q 040274          203 PYEDVLGIGHS  213 (359)
Q Consensus       203 p~~~~l~~g~~  213 (359)
                      |||++|+....
T Consensus       182 PDgk~iaf~~~  192 (465)
T d1xfda1         182 PDGTRLAYAAI  192 (465)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCeEEEEEe
Confidence            99999998753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=5e-05  Score=63.35  Aligned_cols=146  Identities=15%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLG-HSGG--TVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg-~~dg--~v~lwd~~~~~~~~  103 (359)
                      ....|+|||..++....                         ......+++++..++.. ..+|  .|.++++.++.. .
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~  164 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-Q  164 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-E
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-e
Confidence            78899999999987554                         34455677766654444 4455  455666665533 3


Q ss_pred             EeecCCCCeEEEEEecCCCEEEEecCCC---eEEEEEcCCCeeeEee-cCCceeEEEcCCC--cEEEEc---CCcEEEEc
Q 040274          104 KMLYHQGPVSALAFHPNGHLMATTGKEC---KIKIWDLRKYEVLQTL-TGHAKTLDFSQKG--LLAVGT---GSFAQILG  174 (359)
Q Consensus       104 ~~~~h~~~v~~l~~~p~g~~l~s~~~d~---~i~vwd~~~~~~~~~~-~~~v~~~~~s~~g--l~~~~~---d~~i~v~d  174 (359)
                      .+..+........|+|++..++..+.++   .|.++|...+...... .+......|||||  ++..+.   ...|++++
T Consensus       165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            3345567778889999999988776543   4555565555432222 4456788999999  443332   24688888


Q ss_pred             CCCCCccccccccccCCCCcceeEEEEccC
Q 040274          175 DFSGSHNYSRYMGNSMVKGYQIGKVSFRPY  204 (359)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  204 (359)
                      +... . ...+....+    .+...+|||.
T Consensus       245 ~dg~-~-~~~lt~~~g----~~~~p~WSP~  268 (269)
T d2hqsa1         245 TDGR-F-KARLPATDG----QVKFPAWSPY  268 (269)
T ss_dssp             TTSC-C-EEECCCSSS----EEEEEEECCC
T ss_pred             CCCC-C-EEEEeCCCC----cEEeEEeCCC
Confidence            5433 2 233333322    6788999994

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.26  E-value=0.0001  Score=63.61  Aligned_cols=155  Identities=8%  Similarity=-0.039  Sum_probs=94.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCC----CeEEEEEecCCCEEEEecC---------------C
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQG----PVSALAFHPNGHLMATTGK---------------E  130 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~----~v~~l~~~p~g~~l~s~~~---------------d  130 (359)
                      ...|+|++++..+++++..+.|..+++.............+    ..+.++++|+|++.+|-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45799999998888888777888889875532221111111    3578999999998887432               3


Q ss_pred             CeEEEEEcCCCeeeEee--cCCceeEEEcCCC------cEE-EEcCCcEEEEcCCCCCcccc--ccccccCCCCcceeEE
Q 040274          131 CKIKIWDLRKYEVLQTL--TGHAKTLDFSQKG------LLA-VGTGSFAQILGDFSGSHNYS--RYMGNSMVKGYQIGKV  199 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~g------l~~-~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~v~~~  199 (359)
                      |.|+.++.. ++.....  -...+.++|+|++      ++. -+..+.|..||+...+....  .+.............+
T Consensus       153 G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             ceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            456555543 3332222  2234688998864      333 33567888888543322211  1111111011235678


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEcCCC
Q 040274          200 SFRPYEDVLGIGHSMGWSGILVPRSS  225 (359)
Q Consensus       200 ~~sp~~~~l~~g~~dg~~~i~~~gs~  225 (359)
                      ++..+|++.++....+.+.+|.+..+
T Consensus       232 avD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         232 DFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             EEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            99999998888888888888876544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.1e-05  Score=72.03  Aligned_cols=76  Identities=11%  Similarity=0.092  Sum_probs=55.4

Q ss_pred             eEEEECCCCCEEEEecc----------------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPT   97 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~   97 (359)
                      .+..|||||++|+....                                  .+....|||+|+.||... ++.|.+.+..
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~  142 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV  142 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence            67789999999887542                                  345688999999998876 5688888887


Q ss_pred             CCcceEEee-cCCCC-----------------eEEEEEecCCCEEEEec
Q 040274           98 TSALLIKML-YHQGP-----------------VSALAFHPNGHLMATTG  128 (359)
Q Consensus        98 ~~~~~~~~~-~h~~~-----------------v~~l~~~p~g~~l~s~~  128 (359)
                      ++..+.... +..+.                 -.++.|||||++||...
T Consensus       143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            766554332 22221                 25778999999998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.17  E-value=0.00023  Score=61.36  Aligned_cols=147  Identities=12%  Similarity=0.086  Sum_probs=94.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC----CeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE----CKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d----~~i~vwd~~~~~~~  144 (359)
                      .+..++|+++|+++++-..++.|..|++.++.....+.........++++++|+++++...+    +.|...|.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            45689999999977777788999999998876555555566678999999999988776432    34555555544433


Q ss_pred             Eeec-----CCceeEEEcCCC-cEEEEcC-------CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          145 QTLT-----GHAKTLDFSQKG-LLAVGTG-------SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       145 ~~~~-----~~v~~~~~s~~g-l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ....     ..++.+.+.++| ++.+...       +.+..++. .+ .....+....    ...+.++|+|+++.|+++
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~-dg-~~~~~~~~~~----~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP-DF-RTVTPIIQNI----SVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT-TS-CCEEEEEEEE----SSEEEEEECTTSSEEEEE
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec-cc-ceeEEEeecc----ceeeeeeeccccceEEEe
Confidence            3221     235789999999 6555433       23555542 22 2222222221    135779999999876544


Q ss_pred             -eCCCeEEEEE
Q 040274          212 -HSMGWSGILV  221 (359)
Q Consensus       212 -~~dg~~~i~~  221 (359)
                       +..+.+..|.
T Consensus       195 d~~~~~I~~~d  205 (319)
T d2dg1a1         195 ETTANRLHRIA  205 (319)
T ss_dssp             EGGGTEEEEEE
T ss_pred             cccCCceEEEE
Confidence             4455555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.81  E-value=0.001  Score=56.48  Aligned_cols=153  Identities=13%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             eEEEECCCCCEEEEecc-------------------------ceeEEEEcCCCCEEEEEeC----CCeEEEEeCCCCcce
Q 040274           52 ILWILPSSGRYMAVAGR-------------------------RTDLMRVNPFNGVVSLGHS----GGTVTMWKPTTSALL  102 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-------------------------~v~~l~~sp~~~~l~tg~~----dg~v~lwd~~~~~~~  102 (359)
                      .++.+.++|++++++..                         .++.+.+.|+|.+.++...    .+.-.+|.+..++..
T Consensus        62 ~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~  141 (295)
T d2ghsa1          62 SALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT  141 (295)
T ss_dssp             EEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE
T ss_pred             EEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE
Confidence            67777788887776554                         5678888888886655432    223456666556543


Q ss_pred             EEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcCCC------ee--eEee---cCCceeEEEcCCC-cEEEE-cCC
Q 040274          103 IKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLRKY------EV--LQTL---TGHAKTLDFSQKG-LLAVG-TGS  168 (359)
Q Consensus       103 ~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~~~------~~--~~~~---~~~v~~~~~s~~g-l~~~~-~d~  168 (359)
                      ..+ ..-..-+.++|++++..|+ +-+..+.|+.|++...      +.  ...+   .+....+++..+| +..+. ..+
T Consensus       142 ~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         142 KLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             EEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence            333 3334568899999998654 4456788999987531      11  1111   2346788999999 55555 467


Q ss_pred             cEEEEcCCCCCccccccccccCCCCcceeEEEEc-cCCCEEEEE
Q 040274          169 FAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFR-PYEDVLGIG  211 (359)
Q Consensus       169 ~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~g  211 (359)
                      .|..||. .+ .....+...    ...+++++|- |+.+.|++.
T Consensus       221 ~V~~~dp-~G-~~~~~i~lP----~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         221 AVDRYDT-DG-NHIARYEVP----GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEECT-TC-CEEEEEECS----CSBEEEEEEESTTSCEEEEE
T ss_pred             ceEEecC-CC-cEeeEecCC----CCceEEEEEeCCCCCEEEEE
Confidence            8999994 43 444444332    2368999996 676666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=0.0051  Score=51.90  Aligned_cols=152  Identities=9%  Similarity=-0.014  Sum_probs=96.9

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeec----CCCCeEEEEEecCCCEEEEecC----CCeEEEEEcCC
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLY----HQGPVSALAFHPNGHLMATTGK----ECKIKIWDLRK  140 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~----h~~~v~~l~~~p~g~~l~s~~~----d~~i~vwd~~~  140 (359)
                      .+.++++.++|.++++ +.+ .|.++|+.+++.......    ....++.+.+.|+|++.++...    .+.-.+|.+..
T Consensus        60 ~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~  137 (295)
T d2ghsa1          60 MGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK  137 (295)
T ss_dssp             CEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred             CcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence            6888999888876665 444 588999998864432221    1225788999999998776543    23456676666


Q ss_pred             CeeeEee--cCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCcc----ccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          141 YEVLQTL--TGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHN----YSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       141 ~~~~~~~--~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                      ++.....  -...+.++|++++   +++-+..+.|..|++......    ...+..... .......+++..+|.+.++.
T Consensus       138 g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~-~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         138 GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEE
T ss_pred             CcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc-ccccccceEEcCCCCEEeee
Confidence            6654433  2345889999999   344445688888875322111    111111111 12257788999999988877


Q ss_pred             eCCCeEEEEEcC
Q 040274          212 HSMGWSGILVPR  223 (359)
Q Consensus       212 ~~dg~~~i~~~g  223 (359)
                      ...|.+..|.+.
T Consensus       217 ~~~g~V~~~dp~  228 (295)
T d2ghsa1         217 WGEGAVDRYDTD  228 (295)
T ss_dssp             ETTTEEEEECTT
T ss_pred             eCCCceEEecCC
Confidence            778877777763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.54  E-value=0.0025  Score=52.61  Aligned_cols=159  Identities=8%  Similarity=-0.014  Sum_probs=80.6

Q ss_pred             eEEEECCCCCEEEEecc-----------------------------------ceeEEEEcCCCCEEEEEeCC------Ce
Q 040274           52 ILWILPSSGRYMAVAGR-----------------------------------RTDLMRVNPFNGVVSLGHSG------GT   90 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~-----------------------------------~v~~l~~sp~~~~l~tg~~d------g~   90 (359)
                      ....|||||++||....                                   ......|+|+++.|+.....      ..
T Consensus        44 ~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  123 (281)
T d1k32a2          44 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTC  123 (281)
T ss_dssp             EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCE
T ss_pred             cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCcccee
Confidence            77899999999997532                                   34567899999988876432      23


Q ss_pred             EEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCC-----------eEEEEEcCCCeeeEee--cCCceeEEEc
Q 040274           91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC-----------KIKIWDLRKYEVLQTL--TGHAKTLDFS  157 (359)
Q Consensus        91 v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~-----------~i~vwd~~~~~~~~~~--~~~v~~~~~s  157 (359)
                      +.+.+...+....   .+.+....+.+.+++..++....+.           ...++...........  ........++
T Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (281)
T d1k32a2         124 LYRVENDGINFVP---LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV  200 (281)
T ss_dssp             EEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred             eeeecCCCceeEE---ecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeee
Confidence            4455555443222   2233333444444444444433221           1122222222222211  2334556677


Q ss_pred             CCCcEEEE-cC--CcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          158 QKGLLAVG-TG--SFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       158 ~~gl~~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                      ++.++... .+  ..|.++|+...  ....+..+.     ......|+|||+.|+... +|.+.++.
T Consensus       201 ~~~~~~~~~~~~~~~l~~~d~~g~--~~~~lt~~~-----~~~~~~~SpDG~~I~f~~-~~~l~~~d  259 (281)
T d1k32a2         201 GHRIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-----DYYPRHLNTDGRRILFSK-GGSIYIFN  259 (281)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTSC--SCEECCCCC-----SSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred             ccccceecccccccceEEEeCCCC--ceEEeecCC-----CcccccCcCCCCEEEEEe-CCEEEEEE
Confidence            76633333 33  46777775433  222222221     123346899999887644 34443333

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.48  E-value=0.0007  Score=56.15  Aligned_cols=90  Identities=13%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC----C--CeEEEEEcCCCeeeE
Q 040274           74 RVNPF--NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK----E--CKIKIWDLRKYEVLQ  145 (359)
Q Consensus        74 ~~sp~--~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~----d--~~i~vwd~~~~~~~~  145 (359)
                      ..+|+  |+.++..+ +|.|.+.|+.++.. ..+..+.+.+...+|||||+.||....    +  ..|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45777  88777664 46788889998775 456667788899999999999886532    2  248888888776543


Q ss_pred             ee--c-------CCceeEEEcCCC-cEEEE
Q 040274          146 TL--T-------GHAKTLDFSQKG-LLAVG  165 (359)
Q Consensus       146 ~~--~-------~~v~~~~~s~~g-l~~~~  165 (359)
                      ..  .       .....+.|+|+| .++.+
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEE
Confidence            22  1       124678899999 44443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.083  Score=43.31  Aligned_cols=147  Identities=9%  Similarity=-0.050  Sum_probs=88.1

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEE-EecCCCeEEEEEcCCCeeeEe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA-TTGKECKIKIWDLRKYEVLQT  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~-s~~~d~~i~vwd~~~~~~~~~  146 (359)
                      .+.+|+|++.++.|+... .++.|...+++.+.....+......+.+++++.-+..|+ +-...+.|.+.++........
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l  116 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence            577899999777776664 567898888876654444444446788999987555554 555678999999885543222


Q ss_pred             e---cCCceeEEEcCCC--cEEEEcC-Cc--EEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe-CCCeE
Q 040274          147 L---TGHAKTLDFSQKG--LLAVGTG-SF--AQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH-SMGWS  217 (359)
Q Consensus       147 ~---~~~v~~~~~s~~g--l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~-~dg~~  217 (359)
                      +   ...+..++++|..  ++....+ +.  |...++..  .....+....   -.....+++.+.++.|..+. ..+.+
T Consensus       117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG--~~~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC--CCceeeeeec---ccccceEEEeecCcEEEEEeCCCCEE
Confidence            2   2457889999866  3323222 23  44444322  2222222211   12467899988877775553 34444


Q ss_pred             EEE
Q 040274          218 GIL  220 (359)
Q Consensus       218 ~i~  220 (359)
                      ...
T Consensus       192 ~~~  194 (263)
T d1npea_         192 ECL  194 (263)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.68  E-value=0.068  Score=46.75  Aligned_cols=168  Identities=11%  Similarity=0.028  Sum_probs=97.6

Q ss_pred             eEEEEC---CCCCEEEEecc-------------------------ceeEEEEcC--CCCEEEEEeCC-------------
Q 040274           52 ILWILP---SSGRYMAVAGR-------------------------RTDLMRVNP--FNGVVSLGHSG-------------   88 (359)
Q Consensus        52 ~~l~~s---pdg~~l~~~~~-------------------------~v~~l~~sp--~~~~l~tg~~d-------------   88 (359)
                      -.+++.   +||+||++...                         .++.++..+  ...+++.++.+             
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            566665   48999988765                         455556544  44567766642             


Q ss_pred             -----CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCC---------------------------------
Q 040274           89 -----GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKE---------------------------------  130 (359)
Q Consensus        89 -----g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d---------------------------------  130 (359)
                           +.+.++|..+.+....+.. .+....+.++|+|+++++.+.+                                 
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 2367789888877666553 3456678999999998876532                                 


Q ss_pred             -----CeEEEEEcCC--C-eeeEee--cCCceeEEEcCCC-cE--EEEcCCcEEEEcCCCCC-------ccccccccccC
Q 040274          131 -----CKIKIWDLRK--Y-EVLQTL--TGHAKTLDFSQKG-LL--AVGTGSFAQILGDFSGS-------HNYSRYMGNSM  190 (359)
Q Consensus       131 -----~~i~vwd~~~--~-~~~~~~--~~~v~~~~~s~~g-l~--~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~  190 (359)
                           +.+.+-|.+.  + ..+..+  +.....+.++||| ++  ++..+.++.|+|+..-.       .....+.....
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                 1123334332  1 122222  3446789999999 33  33357899999964211       11111111111


Q ss_pred             CCCcceeEEEEccCCCEEEEEeCCCeEEEEE
Q 040274          191 VKGYQIGKVSFRPYEDVLGIGHSMGWSGILV  221 (359)
Q Consensus       191 ~~~~~v~~~~~sp~~~~l~~g~~dg~~~i~~  221 (359)
                       .+-......|+..|....+-.-|..+.-|.
T Consensus       327 -lglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         327 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             -cCcCccccccCCCceEEEEeeccceEEEEe
Confidence             223456678887776555555565555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.64  E-value=0.071  Score=46.63  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCcceEEee-cCCCCeEEEEEec--CCCEEEEecCCC------------------eEEE
Q 040274           78 FNGVVSLGH-SGGTVTMWKPTTSALLIKML-YHQGPVSALAFHP--NGHLMATTGKEC------------------KIKI  135 (359)
Q Consensus        78 ~~~~l~tg~-~dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~p--~g~~l~s~~~d~------------------~i~v  135 (359)
                      ||+++++.. .++.|-+.|+.+.++...+. .....+..+...+  +-.|+++++.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            678877766 67899999999988755443 2344567776654  455777766532                  3667


Q ss_pred             EEcCCCeeeEee--cCCceeEEEcCCC--cEEEE
Q 040274          136 WDLRKYEVLQTL--TGHAKTLDFSQKG--LLAVG  165 (359)
Q Consensus       136 wd~~~~~~~~~~--~~~v~~~~~s~~g--l~~~~  165 (359)
                      +|..+.+....+  .+....++++++|  +++.+
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            898888776655  5667889999999  44444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.12  Score=44.70  Aligned_cols=133  Identities=14%  Similarity=0.044  Sum_probs=77.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEe--
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT--  146 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~--  146 (359)
                      .|..++|+.+  .++.. .++.+..++..+-........-..++..+.++|.  .++....++.+.++++..+.....  
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            5788888754  44444 4456777776654333333334567888888775  566777789999999987753211  


Q ss_pred             ------ecCCceeEEEcCCC--cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE
Q 040274          147 ------LTGHAKTLDFSQKG--LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG  211 (359)
Q Consensus       147 ------~~~~v~~~~~s~~g--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g  211 (359)
                            +.+.+.+++|++.|  ++++ .++...+.....   ....+..... ....|.++.|..+..++++-
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~-~g~~~q~k~~i~---~~~~~~~p~~-~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAW-RNGEMEKQFEFS---LPSELEELPV-EEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEE-ETTEEEEEEEEC---CCHHHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEe-CCCceeeccCCC---CccccCCCcC-CCcceeEEEEecCceEEEEE
Confidence                  14567788888877  4443 333333321111   1111111111 12368999999877777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.50  E-value=0.14  Score=43.64  Aligned_cols=122  Identities=14%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             CCeEEEEeCCCCcceE----Eee-cCCCCeEEEEEecCCCEEEEecC---C------------CeEEEEEcCCCee--eE
Q 040274           88 GGTVTMWKPTTSALLI----KML-YHQGPVSALAFHPNGHLMATTGK---E------------CKIKIWDLRKYEV--LQ  145 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~----~~~-~h~~~v~~l~~~p~g~~l~s~~~---d------------~~i~vwd~~~~~~--~~  145 (359)
                      ..+|.+|++.......    ++. ......+.+++..+|.+++|-..   +            ++..+|....+..  +.
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~  202 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  202 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc
Confidence            4467777665332211    111 11235688999889988888311   1            2234444443332  22


Q ss_pred             eecCCceeEEEcCCC---cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEcc-CCCEEEEEe
Q 040274          146 TLTGHAKTLDFSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRP-YEDVLGIGH  212 (359)
Q Consensus       146 ~~~~~v~~~~~s~~g---l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~g~  212 (359)
                      .--...+.|+++|++   +++-+..+.|.+|++... ..........  -....-.+.+.+ +|.+.+.++
T Consensus       203 ~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~-~~l~~~~~~~--l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         203 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVLS--FDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEE--CSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC-cccceEEEec--CCCCCCccEEecCCCEEEEEEC
Confidence            212457899999998   445556789999986543 2222211111  112467788876 445444443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.36  E-value=0.054  Score=46.59  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             EcCCCCEEEEEeCC-----C------eEEEEeCCCCcceE--Eee-cCCCCeEEEEEecCCCEEEEecCC-CeEEEEEcC
Q 040274           75 VNPFNGVVSLGHSG-----G------TVTMWKPTTSALLI--KML-YHQGPVSALAFHPNGHLMATTGKE-CKIKIWDLR  139 (359)
Q Consensus        75 ~sp~~~~l~tg~~d-----g------~v~lwd~~~~~~~~--~~~-~h~~~v~~l~~~p~g~~l~s~~~d-~~i~vwd~~  139 (359)
                      ...+|++++.|+.+     +      .+.+||+.+++...  .+. .|.....+.++.++|.+++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            34467777776642     1      37799998875432  222 344445567888999999998765 579999998


Q ss_pred             CCeeeEe--ec--CCceeEEEcCCC--cEEEEcC------CcEEEEcCCCC
Q 040274          140 KYEVLQT--LT--GHAKTLDFSQKG--LLAVGTG------SFAQILGDFSG  178 (359)
Q Consensus       140 ~~~~~~~--~~--~~v~~~~~s~~g--l~~~~~d------~~i~v~d~~~~  178 (359)
                      +......  +.  ..-.+++..+||  ++.++.+      +.+.+||+.+.
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            7654321  11  122456777888  4444432      46899996654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.12  Score=44.70  Aligned_cols=138  Identities=8%  Similarity=-0.049  Sum_probs=84.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCC----------C-CcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPT----------T-SALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD  137 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~----------~-~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd  137 (359)
                      .++-+++++...+++.|+.++ +.|..+.          . ......  ..-..|..++|+.+  .|+.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~--~~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec--cCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            567788888777888888775 4555421          1 111111  12235888999755  44443 455678887


Q ss_pred             cCCCe---eeEeecCCceeEEEcCCCcEEEEcCCcEEEEcCCCCCccccc--cccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          138 LRKYE---VLQTLTGHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSR--YMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       138 ~~~~~---~~~~~~~~v~~~~~s~~gl~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      ..+..   ....+..++..+.++|..++.+..++.+.++++.........  .....  -...+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~--~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFD--VTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEE--ECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEE--ecCCceEEEEeCCcEEEEEeC
Confidence            76533   233345678889999988777888899999987665321110  00000  112578888888887777765


Q ss_pred             CC
Q 040274          213 SM  214 (359)
Q Consensus       213 ~d  214 (359)
                      .+
T Consensus       190 g~  191 (381)
T d1xipa_         190 NG  191 (381)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.58  E-value=0.38  Score=39.72  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCceeEEEcCCCcEEEEc
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHAKTLDFSQKGLLAVGT  166 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v~~~~~s~~gl~~~~~  166 (359)
                      .+|.|.|+.....+..-..   .--+.-.+|..+.||.-+ ..++.+||+.+.+.+..+  ..+|.--.|-.+..++.-.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT  120 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT  120 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc
Confidence            3688888876543322111   123455689888887765 468999999999888777  5678778887777666667


Q ss_pred             CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEEe
Q 040274          167 GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIGH  212 (359)
Q Consensus       167 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~  212 (359)
                      +..|+=|++.....+...+..|....+..|.....+++++|++..+
T Consensus       121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence            7889999975444444444444333456799999999999987543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.40  E-value=0.043  Score=50.76  Aligned_cols=72  Identities=18%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             CCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CC--ceeEEEcCCC
Q 040274           88 GGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GH--AKTLDFSQKG  160 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~--v~~~~~s~~g  160 (359)
                      .|.|.-+|+.+++.+..+..+. ++.+-..+..|.++++++.||.++.+|..+|+.+.++.  ..  ..-+.|..+|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            3678889999999888776432 23322234567788889999999999999999998883  22  2347777888

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.05  E-value=0.15  Score=44.87  Aligned_cols=101  Identities=10%  Similarity=0.008  Sum_probs=60.3

Q ss_pred             CeEEEEEecCCCEEEEec-CC----CeEEEEEcCCCeeeE-eecC-CceeEEEcCCC--cEEEEcC--------------
Q 040274          111 PVSALAFHPNGHLMATTG-KE----CKIKIWDLRKYEVLQ-TLTG-HAKTLDFSQKG--LLAVGTG--------------  167 (359)
Q Consensus       111 ~v~~l~~~p~g~~l~s~~-~d----~~i~vwd~~~~~~~~-~~~~-~v~~~~~s~~g--l~~~~~d--------------  167 (359)
                      .+..++++|++++++.+- .+    ..|+++|+.+++.+. .+.. ....++|++++  ++....+              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345677899999877432 22    469999999998764 3322 23678999998  4444322              


Q ss_pred             --CcEEEEcCCCCCccc-cccccccCCCCcceeEEEEccCCCEEEEEeC
Q 040274          168 --SFAQILGDFSGSHNY-SRYMGNSMVKGYQIGKVSFRPYEDVLGIGHS  213 (359)
Q Consensus       168 --~~i~v~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~g~~  213 (359)
                        ..|..|.+.+....- ..+....  ....+..+..++++++++....
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d--~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPD--EPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTT--CTTCEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEECCCCcccccccccccc--CCceEEeeeccCCcceeeEEee
Confidence              246666654432211 1222111  1124667788899998875443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.87  E-value=0.16  Score=46.49  Aligned_cols=128  Identities=13%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEeecCC----------------------------------C--CeEEEEEecCCCEE
Q 040274           81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQ----------------------------------G--PVSALAFHPNGHLM  124 (359)
Q Consensus        81 ~l~tg~~dg~v~lwd~~~~~~~~~~~~h~----------------------------------~--~v~~l~~~p~g~~l  124 (359)
                      .++.+..+|.+.++|..+++++.....-.                                  +  .-...+++|+..++
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~  395 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence            56677889999999999998775432110                                  0  00145667776665


Q ss_pred             EEecC------------------------------------CCeEEEEEcCCCeeeEee--cCCceeEEEc-CCC-cEEE
Q 040274          125 ATTGK------------------------------------ECKIKIWDLRKYEVLQTL--TGHAKTLDFS-QKG-LLAV  164 (359)
Q Consensus       125 ~s~~~------------------------------------d~~i~vwd~~~~~~~~~~--~~~v~~~~~s-~~g-l~~~  164 (359)
                      +....                                    .|.|.-||+.+++.+..+  ..+..+-.++ ..| ++++
T Consensus       396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G  475 (560)
T d1kv9a2         396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG  475 (560)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEE
Confidence            54332                                    256888999999988776  2333222222 344 6677


Q ss_pred             EcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC-EEEEEe
Q 040274          165 GTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED-VLGIGH  212 (359)
Q Consensus       165 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~g~  212 (359)
                      +.|+.++.||..++ +.+-.+.......+.+   +.|..+|+ ||++.+
T Consensus       476 ~~dg~l~A~Da~tG-e~LW~~~l~~~~~~~P---~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         476 TAAGQMHAYSADKG-EALWQFEAQSGIVAAP---MTFELAGRQYVAIMA  520 (560)
T ss_dssp             CTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTEEEEEEEE
T ss_pred             CCCCcEEEEECCCC-cEeEEEECCCCccccC---EEEEECCEEEEEEEe
Confidence            88999999997666 4443333332212222   45556774 554443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.87  E-value=0.23  Score=45.47  Aligned_cols=78  Identities=5%  Similarity=-0.012  Sum_probs=44.7

Q ss_pred             CeEEEEEcCCCeeeEeec--CCceeEEEc-CCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          131 CKIKIWDLRKYEVLQTLT--GHAKTLDFS-QKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~~--~~v~~~~~s-~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      |.|.-||+.+++.+..+.  .+...-..+ ..| +++++.|+.++.||..++ +.+-.+.......+.+   +.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCC-cEeEEEECCCCccccC---EEEEECCE
Confidence            357788888888877763  222211122 334 667778999999996666 4444443332212223   45556775


Q ss_pred             -EEEEEe
Q 040274          207 -VLGIGH  212 (359)
Q Consensus       207 -~l~~g~  212 (359)
                       ||++.+
T Consensus       533 QYv~v~~  539 (573)
T d1kb0a2         533 QYVSVAV  539 (573)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.80  E-value=0.25  Score=45.29  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=44.0

Q ss_pred             CeEEEEEcCCCeeeEeec--CCce-eEEEcCCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          131 CKIKIWDLRKYEVLQTLT--GHAK-TLDFSQKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~~--~~v~-~~~~s~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      |.|.-+|+.+++.+..+.  .+.. .......| +++++.|+.++.||..++ +.+-.+.......   -.-+.|..+|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~---a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGI---GSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCC---SCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCC-cEEEEEECCCCce---ecceEEEECCE
Confidence            467788888888876662  2222 12222455 667788999999997665 4443333222112   22255666774


Q ss_pred             -EEEEE
Q 040274          207 -VLGIG  211 (359)
Q Consensus       207 -~l~~g  211 (359)
                       |+++.
T Consensus       520 qYi~v~  525 (571)
T d2ad6a1         520 QYIGSM  525 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             44443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.55  E-value=1.3  Score=38.92  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=37.6

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--Eee------cCCCCeEEEEEecC
Q 040274           68 RRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI--KML------YHQGPVSALAFHPN  120 (359)
Q Consensus        68 ~~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~--~~~------~h~~~v~~l~~~p~  120 (359)
                      ...++|+|.|++.+|++--..|.|.+++..++....  .+.      .-.+....++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            367899999999888877567999999887764322  111      12346788999994

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.43  E-value=0.088  Score=48.41  Aligned_cols=71  Identities=15%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEee--cCCc--eeEEEcCCC
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL--TGHA--KTLDFSQKG  160 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~v--~~~~~s~~g  160 (359)
                      |.|.-+|+.|++.+...... .+..+-...-.+.++++++.|+.++.+|..+|+.+.++  ...+  .-+.|..+|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dG  518 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECC
Confidence            57888999999888776422 22121112234668888999999999999999999888  3333  347777788

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=1.1  Score=36.24  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=70.1

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEec--CCCeEEEEEcCCCeeeE
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQ  145 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~--~d~~i~vwd~~~~~~~~  145 (359)
                      .+.+|++.+.+..|+.+ ...+.|.+.++........+........+++++|...+|+.+.  ..+.|...++.......
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            56778998866655555 4567899999886655454555556788999999655555443  34567777776443322


Q ss_pred             eec---CCceeEEEcCCC--cEEE-EcCCcEEEEcCC
Q 040274          146 TLT---GHAKTLDFSQKG--LLAV-GTGSFAQILGDF  176 (359)
Q Consensus       146 ~~~---~~v~~~~~s~~g--l~~~-~~d~~i~v~d~~  176 (359)
                      ...   ..++.+++++.+  ++.+ +..+.|...++.
T Consensus       158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccccccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            222   346889998876  4433 445788888853

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.22  E-value=0.11  Score=47.71  Aligned_cols=71  Identities=11%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CCc--eeEEEcCCC
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHA--KTLDFSQKG  160 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~v--~~~~~s~~g  160 (359)
                      |.|.-||+.+++.+..+.... +..+-..+-.|.++++++.|+.++.||..+|+.+.++.  ..+  .-+.|..+|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            467788888888887765322 22222233467788889999999999999999998883  222  235666677

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.10  E-value=0.48  Score=40.23  Aligned_cols=73  Identities=7%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             eeEEEEcCCCCEEEEEeCC-CeEEEEeCCCCcceEEeec-CCCCeEEEEEecCCCEEEEecCC------CeEEEEEcCCC
Q 040274           70 TDLMRVNPFNGVVSLGHSG-GTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGHLMATTGKE------CKIKIWDLRKY  141 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~d-g~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~p~g~~l~s~~~d------~~i~vwd~~~~  141 (359)
                      +...++.+++.+++.|+.+ ..+.+||+.+......-.. ....-.+++..+||.+++.++.+      ..+.+||+.+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            4466788899998888755 5899999987654321111 11223466777899999998753      35899999876


Q ss_pred             e
Q 040274          142 E  142 (359)
Q Consensus       142 ~  142 (359)
                      .
T Consensus       158 ~  158 (387)
T d1k3ia3         158 T  158 (387)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=1.3  Score=35.73  Aligned_cols=149  Identities=5%  Similarity=-0.125  Sum_probs=85.8

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----ceEEeecCCCCeEEEEEecCCCEEEE-ecCCCeEEEEEcCCCe
Q 040274           69 RTDLMRVNPFNGVVSLGH-SGGTVTMWKPTTSA----LLIKMLYHQGPVSALAFHPNGHLMAT-TGKECKIKIWDLRKYE  142 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~-~dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~p~g~~l~s-~~~d~~i~vwd~~~~~  142 (359)
                      .+.+|+|++.++.|+... .++.|...+++...    ....+......+.++++.+.+..|+. -...+.|.+.++....
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~  110 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce
Confidence            677899999777777665 45667766665321    12222233355778999875555544 4566789999988654


Q ss_pred             eeEee---cCCceeEEEcCC-C-cEEEEc--CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCCEEEEE-eCC
Q 040274          143 VLQTL---TGHAKTLDFSQK-G-LLAVGT--GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG-HSM  214 (359)
Q Consensus       143 ~~~~~---~~~v~~~~~s~~-g-l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~g-~~d  214 (359)
                      ....+   ...+..++++|. | ++.+..  .+.|.-.++...  ....+....   ......+++++.++.|+.+ ...
T Consensus       111 ~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSS---CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC--ceecccccc---cceeeEEEeeccccEEEEecCCc
Confidence            43333   245788999885 5 433332  245666654322  222222221   1246889999887766655 344


Q ss_pred             CeEEEEEc
Q 040274          215 GWSGILVP  222 (359)
Q Consensus       215 g~~~i~~~  222 (359)
                      +.+..+..
T Consensus       186 ~~I~~~~~  193 (266)
T d1ijqa1         186 HSISSIDV  193 (266)
T ss_dssp             TEEEEEET
T ss_pred             CEEEEEEC
Confidence            55554443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.74  E-value=0.16  Score=46.50  Aligned_cols=71  Identities=17%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CCc--eeEEEcCCC
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GHA--KTLDFSQKG  160 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~v--~~~~~s~~g  160 (359)
                      |.|.-||+.+++.+..+.. ..+..+-.+.-.+.+++.++.||.++.+|..+|+.+.++.  ..+  .-+.|..+|
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            5688899999988877653 2222222233456788889999999999999999998883  222  335666777

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=1.3  Score=35.58  Aligned_cols=108  Identities=11%  Similarity=-0.027  Sum_probs=66.7

Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecC---CCeEEEEEcCCCeee
Q 040274           69 RTDLMRVNPFNGVVSLG-HSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK---ECKIKIWDLRKYEVL  144 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg-~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~---d~~i~vwd~~~~~~~  144 (359)
                      .+.+|+++.-+..|+.+ ...+.|.+.+++.......+.........++++|...+|+....   ...|..-++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            57788998766666554 45679999998865543333333467889999997776665432   223544455543322


Q ss_pred             Eeec---CCceeEEEcCCC--cEEE-EcCCcEEEEcCC
Q 040274          145 QTLT---GHAKTLDFSQKG--LLAV-GTGSFAQILGDF  176 (359)
Q Consensus       145 ~~~~---~~v~~~~~s~~g--l~~~-~~d~~i~v~d~~  176 (359)
                      ....   ..+..+++++.+  ++.+ ...+.|...|+.
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            2221   345789998776  4333 446788888853

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.68  E-value=0.14  Score=47.37  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCeeeEeec--CC--ceeEEEcCCC
Q 040274           89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT--GH--AKTLDFSQKG  160 (359)
Q Consensus        89 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~--v~~~~~s~~g  160 (359)
                      |.|.-||+.+++.+..... ..++.+-.++-.|.+++.|+.||.++.+|..+|+.+.++.  ..  ..-+.|..+|
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECC
Confidence            5788999999988776542 2222222333457788889999999999999999998883  22  2446677788

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=93.21  E-value=1.3  Score=33.78  Aligned_cols=111  Identities=20%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             eEEEECCCCCEEEEecc----------------------------ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 040274           52 ILWILPSSGRYMAVAGR----------------------------RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLI  103 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~----------------------------~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~  103 (359)
                      .-|.|||+|++.++-..                            ....+-|+|.|-+.++.  ++.++-=.+.+.++..
T Consensus        43 ~~i~fsP~G~LyaVr~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~~LYr~~pPtn~~q~  120 (235)
T d1tl2a_          43 KFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KDKLYKASPPQSDTDN  120 (235)
T ss_dssp             SEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TTEEEEESCCCSTTCC
T ss_pred             eEEEECCCCcEEEEECCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--CcceecCCcCcccchh
Confidence            45899999999887655                            56788899998655555  4666555555543211


Q ss_pred             -----Eeec--CCCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee------eEeec-C---CceeEEEcCCC-cEEEE
Q 040274          104 -----KMLY--HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV------LQTLT-G---HAKTLDFSQKG-LLAVG  165 (359)
Q Consensus       104 -----~~~~--h~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~------~~~~~-~---~v~~~~~s~~g-l~~~~  165 (359)
                           ...+  .-+.+..+-|+|+|.+.+.. .| .++-+....+.-      -..+. +   ...-+.|+|+| |.++.
T Consensus       121 W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~-~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         121 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             HHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             hhhhhhhhccCCcCceeEEEECCCceEEEEE-CC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence                 1112  23457789999999877663 33 477776544321      11221 1   24678999999 66664


Q ss_pred             c
Q 040274          166 T  166 (359)
Q Consensus       166 ~  166 (359)
                      .
T Consensus       199 ~  199 (235)
T d1tl2a_         199 G  199 (235)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.19  E-value=0.37  Score=44.14  Aligned_cols=78  Identities=9%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             CeEEEEEcCCCeeeEeec--CCceeEEEcC-CC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          131 CKIKIWDLRKYEVLQTLT--GHAKTLDFSQ-KG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~~--~~v~~~~~s~-~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      |.|.-+|+.+++.+..++  .++.+-..+- .| +++++.|+.++.||..++ +.+-.+.........+   +.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P---~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPP---ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCC-cEeEEEECCCCccccC---EEEEECCE
Confidence            568888999998877773  3332212223 34 667788999999996666 4444444332212222   56667884


Q ss_pred             -EEEEEe
Q 040274          207 -VLGIGH  212 (359)
Q Consensus       207 -~l~~g~  212 (359)
                       |+++..
T Consensus       542 qYv~i~a  548 (582)
T d1flga_         542 QYLGVTV  548 (582)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.30  E-value=3.1  Score=35.87  Aligned_cols=75  Identities=8%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             eEEEECCCCCEEEEecc---------------------------ceeEEEEcCCCCEEEEEeCC----------------
Q 040274           52 ILWILPSSGRYMAVAGR---------------------------RTDLMRVNPFNGVVSLGHSG----------------   88 (359)
Q Consensus        52 ~~l~~spdg~~l~~~~~---------------------------~v~~l~~sp~~~~l~tg~~d----------------   88 (359)
                      ..+++||||++++.+-.                           ....++|++++..|+....+                
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            35678999999997543                           22678999999877665432                


Q ss_pred             CeEEEEeCCCCcc--eEEeecCC--CCeEEEEEecCCCEEEE
Q 040274           89 GTVTMWKPTTSAL--LIKMLYHQ--GPVSALAFHPNGHLMAT  126 (359)
Q Consensus        89 g~v~lwd~~~~~~--~~~~~~h~--~~v~~l~~~p~g~~l~s  126 (359)
                      ..|.+|.+.+...  ...+....  ..+..+..++++.+++.
T Consensus       208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            2578888777633  23333322  34667778899998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.01  E-value=1  Score=41.23  Aligned_cols=77  Identities=9%  Similarity=0.002  Sum_probs=43.9

Q ss_pred             CeEEEEEcCCCeeeEee--cCCceeEEEc-CCC-cEEEEcCCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          131 CKIKIWDLRKYEVLQTL--TGHAKTLDFS-QKG-LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       131 ~~i~vwd~~~~~~~~~~--~~~v~~~~~s-~~g-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                      |.|.-||+.+++.+...  ..++.+-.++ ..| +++++.|+.++.||..++ +.+-.+.........+   +.|..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG-e~LW~~~~~~~~~a~P---~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYP---MTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCC-cEeeEEECCCCcccCC---eEEEECCE
Confidence            56888888888877665  2222222222 234 556888999999996665 4444443332212233   45556774


Q ss_pred             -EEEEE
Q 040274          207 -VLGIG  211 (359)
Q Consensus       207 -~l~~g  211 (359)
                       |+++.
T Consensus       529 QYvav~  534 (596)
T d1w6sa_         529 QYVAIY  534 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             45443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.16  E-value=4.4  Score=33.74  Aligned_cols=126  Identities=8%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             CCeEEEEeCCCCcceE-Ee--ecCC-----CCeEEEEE--ecCCCE-EEEec---CCCeEEEEEcCCCe--e--eEeec-
Q 040274           88 GGTVTMWKPTTSALLI-KM--LYHQ-----GPVSALAF--HPNGHL-MATTG---KECKIKIWDLRKYE--V--LQTLT-  148 (359)
Q Consensus        88 dg~v~lwd~~~~~~~~-~~--~~h~-----~~v~~l~~--~p~g~~-l~s~~---~d~~i~vwd~~~~~--~--~~~~~-  148 (359)
                      .|.|.++|+.+..+.. .+  .+..     -.-..+.+  .++|.. |++..   ...+|-+|++....  .  +.++. 
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999987654322 11  1111     12244444  445653 44443   45678888876432  2  22232 


Q ss_pred             ---CCceeEEEcCCC-cEEEEc------------------CCcEEEEcCCCCCccccccccccCCCCcceeEEEEccCCC
Q 040274          149 ---GHAKTLDFSQKG-LLAVGT------------------GSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED  206 (359)
Q Consensus       149 ---~~v~~~~~s~~g-l~~~~~------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  206 (359)
                         ...+++.+..+| +++...                  .+.+.-||.  . ..........     ..+.++++||++
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~-~~~~~~~~l~-----~pNGI~~s~d~~  218 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-DVRVVAEGFD-----FANGINISPDGK  218 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--S-CEEEEEEEES-----SEEEEEECTTSS
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--C-ceEEEcCCCC-----ccceeEECCCCC
Confidence               235788888887 444421                  123333442  1 1111112221     478899999998


Q ss_pred             EEEEEeC-CCeEEEEE
Q 040274          207 VLGIGHS-MGWSGILV  221 (359)
Q Consensus       207 ~l~~g~~-dg~~~i~~  221 (359)
                      +|+++.. .+.+.+|.
T Consensus       219 ~lyVa~t~~~~i~~y~  234 (340)
T d1v04a_         219 YVYIAELLAHKIHVYE  234 (340)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCCeEEEEE
Confidence            8766554 44555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.24  E-value=3.1  Score=36.25  Aligned_cols=51  Identities=16%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             CCCeEEEEEecCCCEEEEecCCCeEEEEEcCCCee--eEeec---------CCceeEEEcCC
Q 040274          109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEV--LQTLT---------GHAKTLDFSQK  159 (359)
Q Consensus       109 ~~~v~~l~~~p~g~~l~s~~~d~~i~vwd~~~~~~--~~~~~---------~~v~~~~~s~~  159 (359)
                      -..-++|+|.|+|++|++--.+|.|++++..++..  +..+.         +....|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45568999999999988876689999998877653  23321         23468999986

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.64  E-value=2.7  Score=34.45  Aligned_cols=66  Identities=12%  Similarity=0.058  Sum_probs=51.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEecCCCEEEEecCCCeEEE
Q 040274           70 TDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI  135 (359)
Q Consensus        70 v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p~g~~l~s~~~d~~i~v  135 (359)
                      ..+|..|+....++.-+.-|.|++||+.|+.++..-.-...+|...+-+.+..-+++...+|.|..
T Consensus       258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            457778887778888899999999999999998877666777776666666556666667776543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.76  E-value=5.3  Score=33.50  Aligned_cols=140  Identities=15%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             EEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEeecCCCCeEEEEEec----CC--CEEEEecC--C--CeEEEEEc
Q 040274           72 LMRVNP---FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHP----NG--HLMATTGK--E--CKIKIWDL  138 (359)
Q Consensus        72 ~l~~sp---~~~~l~tg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~p----~g--~~l~s~~~--d--~~i~vwd~  138 (359)
                      ++-+||   +..+|+....++-|++||+. |+.+..+.  .+.++.+..-.    ++  ..++.++.  +  .+|.+|.+
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            333455   45677777777779999986 77666553  45666665432    22  22444442  2  35878877


Q ss_pred             CC-CeeeEeec----------CCceeEEE--cCC-C---cEEEEcCCcEEEEcCCCCC--cc-ccccccccCCCCcceeE
Q 040274          139 RK-YEVLQTLT----------GHAKTLDF--SQK-G---LLAVGTGSFAQILGDFSGS--HN-YSRYMGNSMVKGYQIGK  198 (359)
Q Consensus       139 ~~-~~~~~~~~----------~~v~~~~~--s~~-g---l~~~~~d~~i~v~d~~~~~--~~-~~~~~~~~~~~~~~v~~  198 (359)
                      .. ...+..+.          ..+..+|+  ++. |   .++...+|.+..|.+....  .. ........  ....+..
T Consensus       107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EG  184 (353)
T d1h6la_         107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEG  184 (353)
T ss_dssp             ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEE
T ss_pred             cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccce
Confidence            53 22233331          23566776  654 4   3334456888887653221  11 11111121  2336888


Q ss_pred             EEEccCCCEEEEEeCCCe
Q 040274          199 VSFRPYEDVLGIGHSMGW  216 (359)
Q Consensus       199 ~~~sp~~~~l~~g~~dg~  216 (359)
                      |.+.+....|.++-.+.-
T Consensus       185 CVvDde~~~LyisEE~~G  202 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEA  202 (353)
T ss_dssp             EEEETTTTEEEEEETTTE
T ss_pred             EEEeCCCCcEEEecCccc
Confidence            999998888888866553

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.86  E-value=8.7  Score=29.70  Aligned_cols=146  Identities=14%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEee--cCCCCe--------EEEEE-ecCCCEEEEecC-CCeEEEE
Q 040274           69 RTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKML--YHQGPV--------SALAF-HPNGHLMATTGK-ECKIKIW  136 (359)
Q Consensus        69 ~v~~l~~sp~~~~l~tg~~dg~v~lwd~~~~~~~~~~~--~h~~~v--------~~l~~-~p~g~~l~s~~~-d~~i~vw  136 (359)
                      .|.+++.. +.+..++|+....+.+|-+..|.. ..+.  ..-+.|        ..+.+ .++..-|+++.. .|.++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGkl-rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGL-RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE-EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCce-eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            34455443 345777888777788888877653 2222  112223        33333 222223444444 5566666


Q ss_pred             EcCCCeeeEeecCCceeEEEcCCCcEEEEcC----CcEEEEcCCCCCccccccccccC--CCCcceeEEEEccCCCEEEE
Q 040274          137 DLRKYEVLQTLTGHAKTLDFSQKGLLAVGTG----SFAQILGDFSGSHNYSRYMGNSM--VKGYQIGKVSFRPYEDVLGI  210 (359)
Q Consensus       137 d~~~~~~~~~~~~~v~~~~~s~~gl~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~  210 (359)
                      +...|        .++...+++..-++++..    ....-+|+..+.-....++....  .....|+-+-+.|+++++++
T Consensus       183 tpkeG--------S~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~ii  254 (313)
T d2hu7a1         183 DSGEG--------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVV  254 (313)
T ss_dssp             CCSSE--------EEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred             cCCCC--------cccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEE
Confidence            55444        344444454442233321    12224454432111111111000  00114666779999999999


Q ss_pred             EeCCCeEEEEEcCC
Q 040274          211 GHSMGWSGILVPRS  224 (359)
Q Consensus       211 g~~dg~~~i~~~gs  224 (359)
                      +-.||...+|+.|.
T Consensus       255 akrdG~s~lF~nGk  268 (313)
T d2hu7a1         255 ARREGRSAVFIDGE  268 (313)
T ss_dssp             EEETTEEEEEETTE
T ss_pred             EecCCchheeecce
Confidence            99999999988763