Citrus Sinensis ID: 040306

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETATATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccHHHHHHHHccccHHEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHccccccccHHHccccccccccccHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgkvfasnplslnvtdpafeswlrdsgylesldtatttsatavttastketaTATTITHSLLHYLYTFISLLtanpfaklttddfsantpsWTREFIGAlgsysfpssphtlklRVHENVKRYARNYASLFILFFACSL
Flexible Loop (DISEMBL)
mgkvfasnplslnvtdpAFESWLRDSGYLESLDTatttsatavttastketatATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Low Complexity Region (SEG)
MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDtatttsatavttastketatattitHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Disordered region (IsUnstruct)
*************VTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETATATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFAC**
Disordered Region (DISOPRED)
******SNPLSLNVTDPAFESWLRDSGYLESL**************************HSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHT**LRVHENVKRYARNYASLFILFFACSL
Disordered Region (DISEMBL)
MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETATATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Disordered Region (DISPRO)
****FASNPLSLNVTDPAFESWLRDSGYLESLDT********************TTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETATATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.971	0.560	0.536	1e-34

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 14/149 (9%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETA----------TA 54
           F+ NPLSL+V DPAFESWLRDSGYLE LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSL 139
             ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACAL 151

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
255584403	235	conserved hypothetical protein [Ricinus	0.978	0.578	0.597	3e-37
449456631	235	PREDICTED: PRA1 family protein H-like is	0.971	0.574	0.560	2e-34
224128244	232	predicted protein [Populus trichocarpa]	0.978	0.586	0.624	2e-34
449507067	235	PREDICTED: PRA1 family protein H-like is	0.971	0.574	0.560	3e-34
297799228	241	hypothetical protein ARALYDRAFT_492039 [	0.971	0.560	0.536	4e-33
225461516	233	PREDICTED: PRA1 family protein H-like [V	1.0	0.596	0.538	7e-33
18417012	241	PRA1-like protein H [Arabidopsis thalian	0.971	0.560	0.536	1e-32
302142972	231	unnamed protein product [Vitis vinifera]	0.971	0.584	0.546	2e-32
4469005	208	hypothetical protein [Arabidopsis thalia	0.971	0.649	0.536	2e-32
147844569	244	hypothetical protein VITISV_019028 [Viti	0.971	0.553	0.546	4e-32

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 100/144 (69%), Gaps = 8/144 (5%)

Query: 4   VFASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETATATTITH---- 59
           VF+SNPLSL+V DPAFESWLRDSGYLE LD  ++++A   T  +   + + T        
Sbjct: 2   VFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATITG 61

Query: 60  ----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLR 115
               SL  +  T ISL T NP +KLTTDDFS  TPSWTR F G  GSYSFPS+    +LR
Sbjct: 62  GFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARLR 121

Query: 116 VHENVKRYARNYASLFILFFACSL 139
           VHENVKRYARNYASLFILFFAC+L
Sbjct: 122 VHENVKRYARNYASLFILFFACTL 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 93/141 (65%), Gaps = 6/141 (4%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATT------TSATAVTTASTKETATATTIT 58
           F+SNPLSL+V D AF+SWLRDSGYLE LD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSL 139
           N KRYARNYASLF+LFF C+L
Sbjct: 123 NAKRYARNYASLFVLFFVCTL 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 99/141 (70%), Gaps = 5/141 (3%)

Query: 4   VFASNPLSLNVTDPAFESWLRDSGYLESLDT-----ATTTSATAVTTASTKETATATTIT 58
           VF+SNPLSL+V D  F+SWLRDSGYLE LD      A    AT  T  ST  TATAT + 
Sbjct: 2   VFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGLF 61

Query: 59  HSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            S   ++ T +SL T NPF+KLTTDDFS  TPSWTR F    GSYSFPS     +LRV+E
Sbjct: 62  ISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVNE 121

Query: 119 NVKRYARNYASLFILFFACSL 139
           NVKRYARNYASLFILFFAC+L
Sbjct: 122 NVKRYARNYASLFILFFACTL 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 93/141 (65%), Gaps = 6/141 (4%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATT------TSATAVTTASTKETATATTIT 58
           F+SNPLSL+V D AF+SWLRDSGYLE LD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSL 139
           N KRYARNYASLF+LFF C+L
Sbjct: 123 NAKRYARNYASLFVLFFVCTL 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 14/149 (9%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETA----------TA 54
           F+ NPLSL+V DPAFESWLRDSGYLE LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT NPF+KL+ DDFS +TP WT  F G   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSL 139
             ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACAL 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461516|ref|XP_002285129.1| PREDICTED: PRA1 family protein H-like [Vitis vinifera]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 101/143 (70%), Gaps = 4/143 (2%)

Query: 1   MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDTATTT----SATAVTTASTKETATATT 56
           M   F+SNPLSL+V D AFE+WLRD+GYLE +D  T+     S+   ++++T    + + 
Sbjct: 1   MPMAFSSNPLSLSVPDAAFETWLRDTGYLEVVDRRTSDLHRLSSGGDSSSTTASIPSNSF 60

Query: 57  ITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRV 116
              S+L +L T +SL T NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRV
Sbjct: 61  FFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRV 120

Query: 117 HENVKRYARNYASLFILFFACSL 139
           HENVKRYARNYA+LFI+ FAC+L
Sbjct: 121 HENVKRYARNYATLFIICFACTL 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417012|ref|NP_567776.1| PRA1-like protein H [Arabidopsis thaliana] gi|75155917|sp|Q8LFP1.1|PRA1H_ARATH RecName: Full=PRA1 family protein H; Short=AtPRA1.H gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana] gi|92856594|gb|ABE77405.1| At4g27540 [Arabidopsis thaliana] gi|332659955|gb|AEE85355.1| PRA1-like protein H [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 14/149 (9%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETA----------TA 54
           F+ NPLSL+V DPAFESWLRDSGYLE LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSL 139
             ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACAL 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 4/139 (2%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTT----SATAVTTASTKETATATTITHS 60
           F+SNPLSL+V D AFE+WLRD+GYLE +D  T+     S+   ++++T    + +    S
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDRRTSDLHRLSSGGDSSSTTASIPSNSFFFVS 62

Query: 61  LLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENV 120
           +L +L T +SL T NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRVHENV
Sbjct: 63  ILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHENV 122

Query: 121 KRYARNYASLFILFFACSL 139
           KRYARNYA+LFI+ FAC+L
Sbjct: 123 KRYARNYATLFIICFACTL 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469005|emb|CAB38266.1| hypothetical protein [Arabidopsis thaliana] gi|7269608|emb|CAB81404.1| hypothetical protein [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 14/149 (9%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETA----------TA 54
           F+ NPLSL+V DPAFESWLRDSGYLE LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSL 139
             ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACAL 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844569|emb|CAN80067.1| hypothetical protein VITISV_019028 [Vitis vinifera]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 98/139 (70%), Gaps = 4/139 (2%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTT----SATAVTTASTKETATATTITHS 60
           F+SNPLSL+V D AFE+WLRD+GYLE +D  T+     S+   ++++T    + +    S
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDRRTSDLHRLSSGGDSSSTTASIPSNSFFFVS 62

Query: 61  LLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENV 120
           +L +L T +SL T NPF+KLT+DDFS  TPSWT  F+G   SY FPSS    +LRVHENV
Sbjct: 63  ILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYXFPSSSSQARLRVHENV 122

Query: 121 KRYARNYASLFILFFACSL 139
           KRYARNYA+LFI+ FAC L
Sbjct: 123 KRYARNYATLFIICFACXL 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.971	0.560	0.503	4.7e-32

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 75/149 (50%), Positives = 87/149 (58%)

Query:     5 FASNPLSLNVTDPAFESWLRDSGYLESLDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+V DPAFESWLRDSGYLE LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSL 139
               ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACAL 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      139       114   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.87u 0.17s 11.04t   Elapsed:  00:00:01
  Total cpu time:  10.87u 0.17s 11.04t   Elapsed:  00:00:01
  Start:  Fri May 10 13:16:52 2013   End:  Fri May 10 13:16:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.16
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	97.24
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	89.6

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.16  E-value=3.1e-11  Score=89.40  Aligned_cols=52  Identities=33%  Similarity=0.583  Sum_probs=47.8

Q ss_pred             CCCCCCcchhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHHHhhcC
Q 040306           86 SANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL  139 (139)
Q Consensus        86 ~~~t~~Wtr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~il~FAc~L  139 (139)
                      ..+..|| +||+ +.++|+.|++..|++.|+.+|+.+|..||+.+++++++++|
T Consensus         5 ~~~~Rpw-~eF~-~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~l   56 (153)
T PF03208_consen    5 LSPLRPW-REFF-DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFL   56 (153)
T ss_pred             cCCCCCH-HHHh-CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899 9999 78999999999999999999999999999999999988764

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0003  Score=57.12  Aligned_cols=43  Identities=23%  Similarity=0.501  Sum_probs=37.5

Q ss_pred             CCcchhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHH
Q 040306           90 PSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILF  134 (139)
Q Consensus        90 ~~Wtr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~il~  134 (139)
                      .|| +||+- ..+.|.|++..+|..||--|+.+|--||+.++.++
T Consensus        38 RpW-~ef~d-~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~   80 (187)
T KOG3142|consen   38 RPW-SEFFD-RSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAIL   80 (187)
T ss_pred             CCH-HHHHc-ccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            349 99984 57899999999999999999999999999877554

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=89.60  E-value=0.42  Score=38.80  Aligned_cols=39  Identities=33%  Similarity=0.598  Sum_probs=33.4

Q ss_pred             chhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHH
Q 040306           93 TREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFI  132 (139)
Q Consensus        93 tr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~i  132 (139)
                      +||||-. +--|-|....+|+.||--|.+|+--||..+..
T Consensus        32 ~~eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia   70 (169)
T COG5130          32 TREFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIA   70 (169)
T ss_pred             HHHHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHH
Confidence            5899964 34688999999999999999999999987654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	80.97

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.97  E-value=0.75  Score=33.16  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             CCcccCCCccccc---CchHHHHHhhhcCc--hhhhh
Q 040306            2 GKVFASNPLSLNV---TDPAFESWLRDSGY--LESLD   33 (139)
Q Consensus         2 gm~Fs~NPLSLSv---p~~afe~WlrDsGy--Le~ld   33 (139)
                      ||+|..=|.-..|   -..++..|||+.||  .|.+-
T Consensus         7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~cd~lv   43 (90)
T 2eap_A            7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAV   43 (90)
T ss_dssp             CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccCccccccCHHHHHHHHHHcCCchHHHHH
Confidence            7887765554444   35789999999999  55553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00