Citrus Sinensis ID: 040313

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHEEcccccEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHEEccccEEcccEc
Coil and Loop (DISEMBL)
masklpqlqskasQASEFFIKNGSAYIKQLLEDNkqhikdppntetCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFawfcggeiigrgftitgyhv
Flexible Loop (DISEMBL)
masklpqlqskasqASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Low Complexity Region (SEG)
MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Disordered region (IsUnstruct)
*****************FFIKNGSAYIKQLLE***********TETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGY**
Disordered Region (DISOPRED)
*************QASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Disordered Region (DISEMBL)
**************ASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Disordered Region (DISPRO)
*ASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
225429460	122	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.707	6e-46
224142863	122	predicted protein [Populus trichocarpa]	0.991	1.0	0.699	8e-45
225461175	122	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.674	1e-44
147770309	122	hypothetical protein VITISV_001728 [Viti	0.991	1.0	0.674	5e-44
224088902	122	predicted protein [Populus trichocarpa]	0.991	1.0	0.674	5e-44
255550826	122	hydrogen-transporting ATP synthase, rota	0.991	1.0	0.666	1e-43
102139975	122	mitochondrial ATP synthase g subunit fam	0.991	1.0	0.666	1e-42
351728081	122	uncharacterized protein LOC100306205 [Gl	0.991	1.0	0.666	1e-42
224088909	122	predicted protein [Populus trichocarpa]	0.991	1.0	0.666	2e-42
388493254	122	unknown [Lotus japonicus]	0.991	1.0	0.666	2e-42

>gi|225429460|ref|XP_002277333.1| PREDICTED: uncharacterized protein LOC100267911 [Vitis vinifera] gi|147818794|emb|CAN67282.1| hypothetical protein VITISV_021594 [Vitis vinifera] gi|296081617|emb|CBI20622.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKASQAS+F  K+G AY KQL+E NKQ+I++PP  E C LL+KQLFYTRLA
Sbjct: 1   MASKLVQLQSKASQASQFVAKHGCAYYKQLMEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD +KQ  KNR+ EM +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYEAFWKELDCVKQLWKNRQ-EMKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142863|ref|XP_002324755.1| predicted protein [Populus trichocarpa] gi|118483071|gb|ABK93445.1| unknown [Populus trichocarpa] gi|222866189|gb|EEF03320.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA QAS+F  K+GSAY KQLLE NKQ+I+DPP+ E C LL+KQLFYTRLA
Sbjct: 1   MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD +K   K+R+ E+ +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPVRSEAFWKELDYVKHLWKHRQ-ELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461175|ref|XP_002283029.1| PREDICTED: uncharacterized protein LOC100247007 isoform 1 [Vitis vinifera] gi|359493934|ref|XP_003634695.1| PREDICTED: uncharacterized protein LOC100247007 isoform 2 [Vitis vinifera] gi|302143185|emb|CBI20480.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA+QAS+F +K+G AY KQLLE NKQ++++PP  E C LLAKQLFYTRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVVKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R ++FWKELD +K   KNR+ E+ +++AG+AALFG+EC+AWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQ-ELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770309|emb|CAN71304.1| hypothetical protein VITISV_001728 [Vitis vinifera]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 103/123 (83%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA+QAS+F  K+G AY KQLLE NKQ++++PP  E C LLAKQLFYTRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVXKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R ++FWKELD +K   KNR+ E+ +++AG+AALFG+EC+AWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQ-ELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088902|ref|XP_002308577.1| predicted protein [Populus trichocarpa] gi|118481507|gb|ABK92696.1| unknown [Populus trichocarpa] gi|222854553|gb|EEE92100.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 101/123 (82%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA+QAS+   K+G +Y +QLLE NKQ+I+DPP  E C LL+KQL YTRLA
Sbjct: 1   MASKLAQLQSKAAQASQLVAKHGGSYYRQLLEQNKQYIQDPPTAEKCNLLSKQLLYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD  KQ  KNR+ E+ +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYEAFWKELDSAKQLWKNRK-ELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550826|ref|XP_002516461.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis] gi|223544281|gb|EEF45802.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 100/123 (81%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA+QAS+F  K+G AY KQLLE NKQ+I++PP  E C LL+KQLFYTRL 
Sbjct: 1   MASKLAQLQSKATQASQFVAKHGCAYFKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLE 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD +K   KNR  ++ +++AG+A +FG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYEAFWKELDYVKHLWKNRT-DLKVEDAGIATMFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           YHV
Sbjct: 120 YHV 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|102139975|gb|ABF70110.1| mitochondrial ATP synthase g subunit family protein [Musa balbisiana]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 102/123 (82%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QL+SKA QASEF +K+G AY K+LLE NKQHI  PP  E CQ L+KQLFYTRLA
Sbjct: 1   MASKLHQLRSKAVQASEFVVKHGCAYYKELLEKNKQHIVQPPTVEKCQELSKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R ++FWKELDG+K+  +NRE ++ +++AG+AALFG+E +AWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYESFWKELDGVKRKWRNRE-DLKIEDAGIAALFGLELYAWFCVGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728081|ref|NP_001235391.1| uncharacterized protein LOC100306205 [Glycine max] gi|255627863|gb|ACU14276.1| unknown [Glycine max]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 100/123 (81%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL +LQ+ ASQAS+F    G+ Y KQLLE NKQHI++PP  E C LLAKQLFYTRLA
Sbjct: 1   MASKLQKLQATASQASQFVCSRGTNYYKQLLEQNKQHIQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP+R ++FWKELD  K   KNR+ E+ +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPSRNESFWKELDYAKNLWKNRK-ELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088909|ref|XP_002308578.1| predicted protein [Populus trichocarpa] gi|118483915|gb|ABK93847.1| unknown [Populus trichocarpa] gi|222854554|gb|EEE92101.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 99/123 (80%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA  AS+F  K+G AY KQLLE NKQ+I+DPP  E C LL+KQL YTRLA
Sbjct: 1   MASKLAQLQSKACHASKFVSKHGGAYYKQLLEQNKQYIQDPPTVEKCNLLSKQLLYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD  K   K+R+ E+ +++AG+AALFG+ECFAW+C GEI+GRGFT TG
Sbjct: 61  SIPVRYEAFWKELDYAKHLWKHRQ-ELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y+V
Sbjct: 120 YYV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493254|gb|AFK34693.1| unknown [Lotus japonicus]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 100/123 (81%), Gaps = 1/123 (0%)

Query: 1   MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
           MASKL QLQSKA QA++F  K+G++Y KQLLE N+ +I++PP  E C LLAKQLFYTRLA
Sbjct: 1   MASKLQQLQSKACQATQFIAKHGTSYHKQLLEQNRHYIQEPPTIEKCNLLAKQLFYTRLA 60

Query: 61  SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
           SIP R +AFWKELD  K   KNR+ E+ +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct: 61  SIPGRYEAFWKELDYTKNLWKNRQ-ELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query: 121 YHV 123
           Y V
Sbjct: 120 YFV 122

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:2051960	122	AT2G19680 [Arabidopsis thalian	0.983	0.991	0.622	3e-37
TAIR|locus:2118254	122	AT4G29480 [Arabidopsis thalian	0.983	0.991	0.606	4.9e-37
TAIR|locus:2136789	122	AT4G26210 [Arabidopsis thalian	0.983	0.991	0.581	7.2e-36

TAIR|locus:2051960 AT2G19680 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 76/122 (62%), Positives = 95/122 (77%)

Query:     1 MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
             MASKL QLQSKA QAS+F  K+G++Y KQLLE NKQ+I++P   E C  L+KQL YTRLA
Sbjct:     1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60

Query:    61 SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
             SIP R + F KE+D  K  +KNR   + +++AG+AALFG+ECFAWFC GEI+GRGFT TG
Sbjct:    61 SIPGRYETFRKEVDYAKNLLKNRA-NLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTG 119

Query:   121 YH 122
             Y+
Sbjct:   120 YY 121

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2118254 AT4G29480 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query:     1 MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
             MASKL Q+QSKA +AS+F  K+G++Y +QLLE NKQ+I++P   E CQ L+KQL YTRLA
Sbjct:     1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLA 60

Query:    61 SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
             SIP R + FWKE+D  K   KNR   + +++AG+AALFG+ECFAW+C GEI GRGFT TG
Sbjct:    61 SIPGRYETFWKEVDYAKNLWKNRS-GLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTG 119

Query:   121 YH 122
             Y+
Sbjct:   120 YY 121

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2136789 AT4G26210 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 71/122 (58%), Positives = 96/122 (78%)

Query:     1 MASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLA 60
             MASKL QL+SKA +AS+F  K+G+ Y KQLL+ NK +I++P   E C  L+KQL YTRLA
Sbjct:     1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60

Query:    61 SIPNRVDAFWKELDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITG 120
             SIP R ++FWKE++ +K   KNR  ++ +++AG+AALFG+ECFAW+C GEI+GRGFT TG
Sbjct:    61 SIPGRSESFWKEVNHVKGLWKNRA-DLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTG 119

Query:   121 YH 122
             Y+
Sbjct:   120 YY 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 22  0.49    30
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.47u 0.11s 14.58t   Elapsed:  00:00:01
  Total cpu time:  14.48u 0.11s 14.59t   Elapsed:  00:00:01
  Start:  Fri May 10 13:37:07 2013   End:  Fri May 10 13:37:08 2013

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam04718	103	pfam04718, ATP-synt_G, Mitochondrial ATP synthase	9e-22

>gnl|CDD|218226 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit

 Score = 82.3 bits (204), Expect = 9e-22
 Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 16  SEFFIKNGSAYIKQLLEDNKQHIK---DPPNTETCQLLAKQLFYTRLASIPNRVDAFWKE 72
           +   +     Y K  LE  KQ  K    PP     Q + +QLF             F K 
Sbjct: 4   ATTLVNKAVYYSKVGLEIFKQVAKVELAPPTPADFQEVYQQLFKLIK---------FAKS 54

Query: 73  LDGLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIGRGFTITGYHV 123
               K  ++N +  + +  A L  L G E   WF  GEIIGR   + GY V
Sbjct: 55  GAKPKNLLENLK-NLTVKEAVLNGLVGAEVLGWFYVGEIIGR-RHLVGYKV 103

The Fo sector of the ATP synthase is a membrane bound complex which mediates proton transport. It is composed of nine different polypeptide subunits (a, b, c, d, e, f, g F6, A6L). The function of subunit g is currently unknown. The conserved region covers all but the very N-terminus of the member sequences. No prokaryotic members have been identified thus far. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
KOG4103	103	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
PF04718	103	ATP-synt_G: Mitochondrial ATP synthase g subunit;	99.97
PF04718	103	ATP-synt_G: Mitochondrial ATP synthase g subunit;	91.11

>KOG4103 consensus Mitochondrial F1F0-ATP synthase, subunit g/ATP20 [Energy production and conversion]

Probab=100.00  E-value=1.8e-35  Score=210.69  Aligned_cols=97  Identities=26%  Similarity=0.364  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcchhccCCCchhHHHHHHHHHHHHHhhcCCCChHHHHHHHHhHHHHHH----hhhhcCcHHHHHHHHHHHH
Q 040313           25 AYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMK----NRELEMNLDNAGLAALFGV  100 (123)
Q Consensus        25 ~~~~~l~~k~~~lv~~~~~~~k~~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~k~~~~----~~~~~ltv~ea~~~~l~~~  100 (123)
                      .|+.++++|.+.+++...+.++ |+|..+|.|+|+||+||+++|||++++++.++.+    +.++|+|++|+++|++|++
T Consensus         3 ~~~~~l~~K~~~L~~~~~~~~~-p~l~~~~~y~K~eL~PPt~Ad~pai~q~l~~~~~~~~t~~~Knltv~Eall~~~v~~   81 (103)
T KOG4103|consen    3 NYMSGLVEKAANLVNAALTYAK-PRLAIFWKYAKVELAPPTPADIPAIKQDLAKLKKFAQTGCYKNLTVKEALLNGLVTL   81 (103)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHhcccCCCChhhHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence            4788999999999999999999 9999999999999999999999999999876555    7789999999999999999


Q ss_pred             HHHHHHHhhhhcccCCccccccC
Q 040313          101 ECFAWFCGGEIIGRGFTITGYHV  123 (123)
Q Consensus       101 Ev~~wF~vGEiIGRr~~lvGY~V  123 (123)
                      |+++||+|||||||| +||||+|
T Consensus        82 Evi~wf~vGEiIGrR-~ivGY~v  103 (103)
T KOG4103|consen   82 EVIFWFYVGEIIGRR-HIVGYKV  103 (103)
T ss_pred             HHHHHHHHHHHhccc-ccccccC
Confidence            999999999999999 9999997

>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.97  E-value=3.4e-31  Score=189.21  Aligned_cols=90  Identities=23%  Similarity=0.313  Sum_probs=80.0

Q ss_pred             HhcchhccCCCchhHHHHHHHHHHHHHhhcCCCChHHHHHHHHhHHHHHH------------hhhhcCcHHHHHHHHHHH
Q 040313           32 EDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMK------------NRELEMNLDNAGLAALFG   99 (123)
Q Consensus        32 ~k~~~lv~~~~~~~k~~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~k~~~~------------~~~~~ltv~ea~~~~l~~   99 (123)
                      ++.+.++++.++++| +.+.++..|.+.||.||+++||++.++++.+.++            ++++|+|++|++++|++|
T Consensus         2 ~~~~~l~~~~v~~~k-v~le~~k~v~k~El~PPt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~l~~   80 (103)
T PF04718_consen    2 AKVTSLVNPAVYYSK-VGLELFKQVYKKELAPPTPAEFQSVYQQLFKTVKSAKSGSSPKSKLKQWKNLTVKEAAKNGLVG   80 (103)
T ss_pred             chHHHHHHHHHHHhH-HHHHHHhHHHhhccCCcCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcCCHHHHHHHHHHH
Confidence            456777888889999 8888888888999999999999999988776655            225799999999999999


Q ss_pred             HHHHHHHHhhhhcccCCccccccC
Q 040313          100 VECFAWFCGGEIIGRGFTITGYHV  123 (123)
Q Consensus       100 ~Ev~~wF~vGEiIGRr~~lvGY~V  123 (123)
                      +||+|||||||||||| |||||+|
T Consensus        81 ~Ev~~wF~vGEiIGRr-~ivGY~V  103 (103)
T PF04718_consen   81 AEVYGWFFVGEIIGRR-SIVGYKV  103 (103)
T ss_pred             HHHHHHHhhheeeccC-ceeCccC
Confidence            9999999999999999 9999998

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.11  E-value=0.69  Score=32.98  Aligned_cols=57  Identities=25%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             HhhhhHHHHHHHHHhcchhc---cCCCchhHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHh
Q 040313           19 FIKNGSAYIKQLLEDNKQHI---KDPPNTETCQLLAKQLFYTRLASIPN-RVDAFWKELDG   75 (123)
Q Consensus        19 ~~k~~~~~~~~l~~k~~~lv---~~~~~~~k~~~L~k~~~Y~k~~l~PP-~~~~~~~~~~~   75 (123)
                      ..+|+..|.+-.+|.++++.   ..||+.++||++.+++.+.......+ .++++++..++
T Consensus         7 l~~~~v~~~kv~le~~k~v~k~El~PPt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (103)
T PF04718_consen    7 LVNPAVYYSKVGLELFKQVYKKELAPPTPAEFQSVYQQLFKTVKSAKSGSSPKSKLKQWKN   67 (103)
T ss_pred             HHHHHHHHhHHHHHHHhHHHhhccCCcCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhc
Confidence            45556777777789999988   88999999999999997665522222 34455544433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00